00:50:46 Started by upstream project "Trigger" build number 87
00:50:46 originally caused by:
00:50:46 Started by timer
00:50:46 Running as SYSTEM
00:50:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:50:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8410133058736664106.sh
00:50:48 + source /home/settings.env
00:50:48 ++ OMERO_DB_HOST=pg
00:50:48 ++ OMERO_DB_USER=postgres
00:50:48 ++ OMERO_DB_PASS=
00:50:48 ++ OMERO_ROOT_PASS=omero
00:50:48 ++ OMERO_DATA_DIR=/OMERO
00:50:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:50:48 + OMERO_DB_NAME=OMERO-server
00:50:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:50:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:48 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:50:48 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:50:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:50:48 ++ deactivate nondestructive
00:50:48 ++ '[' -n '' ']'
00:50:48 ++ '[' -n '' ']'
00:50:48 ++ hash -r
00:50:48 ++ '[' -n '' ']'
00:50:48 ++ unset VIRTUAL_ENV
00:50:48 ++ unset VIRTUAL_ENV_PROMPT
00:50:48 ++ '[' '!' nondestructive = nondestructive ']'
00:50:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:50:48 ++ export VIRTUAL_ENV
00:50:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:48 ++ export PATH
00:50:48 ++ '[' -n '' ']'
00:50:48 ++ '[' -z '' ']'
00:50:48 ++ _OLD_VIRTUAL_PS1=
00:50:48 ++ PS1='(.venv3) '
00:50:48 ++ export PS1
00:50:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:50:48 ++ export VIRTUAL_ENV_PROMPT
00:50:48 ++ hash -r
00:50:48 + omero admin stop
00:51:21 Server not running
00:51:22 + echo not running
00:51:22 not running
00:51:22 + sleep 5
00:51:27 + deactivate
00:51:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:51:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:27 + export PATH
00:51:27 + unset _OLD_VIRTUAL_PATH
00:51:27 + '[' -n '' ']'
00:51:27 + hash -r
00:51:27 + '[' -n '' ']'
00:51:27 + unset VIRTUAL_ENV
00:51:27 + unset VIRTUAL_ENV_PROMPT
00:51:27 + '[' '!' '' = nondestructive ']'
00:51:27 + unset -f deactivate
00:51:27 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:51:28 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:51:32 + '[' false = true ']'
00:51:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:51:32 Skipping PURGE_DATA:CleanDbAndRepo
00:51:32 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:51:34 Copied 1 artifact from "OMERO-build" build number 63
00:51:34 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 59
00:51:34 Copied 2 artifacts from "OMERO-build-build" build number 63
00:51:34 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 57
00:51:34 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11003090844308737725.sh
00:51:34 + source /home/settings.env
00:51:34 ++ OMERO_DB_HOST=pg
00:51:34 ++ OMERO_DB_USER=postgres
00:51:34 ++ OMERO_DB_PASS=
00:51:34 ++ OMERO_ROOT_PASS=omero
00:51:34 ++ OMERO_DATA_DIR=/OMERO
00:51:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:51:34 + OMERO_DB_NAME=OMERO-server
00:51:34 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:51:34 + mkdir -p /home/omero/omero-server-data
00:51:34 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:51:34 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:34 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:34 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:34 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:34 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:34 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:34 ++ ls OMERO.server-5.6.3-594-1b0e61632a-ice36-b63.zip
00:51:34 + ZIP=OMERO.server-5.6.3-594-1b0e61632a-ice36-b63.zip
00:51:34 + '[' '!' -z '' ']'
00:51:34 + DIST=OMERO.server-5.6.3-594-1b0e61632a-ice36-b63
00:51:34 + unzip OMERO.server-5.6.3-594-1b0e61632a-ice36-b63.zip
00:51:34 Archive: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63.zip
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/blitz/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/grid/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/profiles/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/error/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/grid/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/janelia/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/matplotlib/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/ncsa_paledit/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/seaborn/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/luts/wcif/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/analysis_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/annotation_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/export_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/figure_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/import_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/scripts/omero/util_scripts/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/server/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/share/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/share/licenses/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/misc/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__1/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__10/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__11/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__2/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__3/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__4/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__5/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__6/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__7/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__8/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3A__9/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3__4/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3__5/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3__6/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO3__7/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4.1__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4.2__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4.2__0/t/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4.3__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4.4__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO4__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.0__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.1__1/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.2__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__1/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__2/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__3/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/var/
00:51:34 creating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/var/tmp/
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/LICENSE.txt
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/backup.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/blitz/mail-senders.example
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/blitz/mail-server.example
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/build.properties
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/env.bat
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/env.sh
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/hibernate.properties
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/ice.config
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/logback-cli.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/logback-indexing-cli.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/logback-indexing.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/logback.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/mime.types
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/node1.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/node2.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/omero.properties
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/profiles/psql
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/rollover.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/Windows.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/error/maintainance.html
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/grid/README
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/grid/default.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/grid/templates.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/grid/windefault.xml
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/ice.config
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/internal.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/master.cfg
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/templates/robot.template
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/etc/testdropbox.config
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/history.rst
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/OMEZarrReader.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/accessors-smart.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/activation.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aggdesigner-algorithm.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aircompressor.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/antlr.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aopalliance.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/apiguardian-api.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/asm.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/avatica-core.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/avatica-metrics.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aws-java-sdk-core.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aws-java-sdk-kms.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/aws-java-sdk-s3.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/base.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-anim.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-awt-util.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-bridge.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-codec.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-constants.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-css.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-dom.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-ext.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-gvt.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-i18n.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-parser.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-script.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-shared-resources.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-svg-dom.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-svggen.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-transcoder.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-util.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/batik-xml.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/btm.jar
00:51:34 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/lib/client/calcite-core.jar
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00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/psql-footer.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/psql-header.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/schema.sql
00:51:36 inflating: OMERO.server-5.6.3-594-1b0e61632a-ice36-b63/sql/psql/OMERO5.4__0/views.sql
00:51:36 + rm -f OMERO.server-5.6.3-594-1b0e61632a-ice36-b63.zip
00:51:37 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-1b0e61632a-ice36-b63 /home/omero/workspace/OMERO-server/OMERO.server
00:51:37 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:51:37 + awsSdkVersion=2.34.6
00:51:37 + jacksonVersion=2.20.0
00:51:37 + logbackVersion=1.3.14
00:51:37 + zarrJavaVersion=0.0.10
00:51:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:51:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:37 --2026-02-25 00:51:37-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:51:38 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:38 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:38 HTTP request sent, awaiting response... 200 OK
00:51:38 Length: 4083366 (3.9M) [application/java-archive]
00:51:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:51:38
00:51:38 0K .......... .......... .......... .......... .......... 1% 18.1M 0s
00:51:38 50K .......... .......... .......... .......... .......... 2% 3.75M 1s
00:51:38 100K .......... .......... .......... .......... .......... 3% 14.3M 0s
00:51:38 150K .......... .......... .......... .......... .......... 5% 4.82M 1s
00:51:38 200K .......... .......... .......... .......... .......... 6% 16.9M 0s
00:51:38 250K .......... .......... .......... .......... .......... 7% 17.0M 0s
00:51:38 300K .......... .......... .......... .......... .......... 8% 13.3M 0s
00:51:38 350K .......... .......... .......... .......... .......... 10% 20.5M 0s
00:51:38 400K .......... .......... .......... .......... .......... 11% 17.2M 0s
00:51:38 450K .......... .......... .......... .......... .......... 12% 16.9M 0s
00:51:38 500K .......... .......... .......... .......... .......... 13% 17.7M 0s
00:51:38 550K .......... .......... .......... .......... .......... 15% 22.0M 0s
00:51:38 600K .......... .......... .......... .......... .......... 16% 13.0M 0s
00:51:38 650K .......... .......... .......... .......... .......... 17% 25.6M 0s
00:51:38 700K .......... .......... .......... .......... .......... 18% 15.9M 0s
00:51:38 750K .......... .......... .......... .......... .......... 20% 18.0M 0s
00:51:38 800K .......... .......... .......... .......... .......... 21% 11.0M 0s
00:51:38 850K .......... .......... .......... .......... .......... 22% 27.4M 0s
00:51:38 900K .......... .......... .......... .......... .......... 23% 27.6M 0s
00:51:38 950K .......... .......... .......... .......... .......... 25% 27.4M 0s
00:51:38 1000K .......... .......... .......... .......... .......... 26% 12.7M 0s
00:51:38 1050K .......... .......... .......... .......... .......... 27% 10.1M 0s
00:51:38 1100K .......... .......... .......... .......... .......... 28% 31.0M 0s
00:51:38 1150K .......... .......... .......... .......... .......... 30% 30.1M 0s
00:51:38 1200K .......... .......... .......... .......... .......... 31% 27.9M 0s
00:51:38 1250K .......... .......... .......... .......... .......... 32% 12.4M 0s
00:51:38 1300K .......... .......... .......... .......... .......... 33% 10.2M 0s
00:51:38 1350K .......... .......... .......... .......... .......... 35% 30.9M 0s
00:51:38 1400K .......... .......... .......... .......... .......... 36% 18.3M 0s
00:51:38 1450K .......... .......... .......... .......... .......... 37% 34.6M 0s
00:51:38 1500K .......... .......... .......... .......... .......... 38% 15.7M 0s
00:51:38 1550K .......... .......... .......... .......... .......... 40% 9.97M 0s
00:51:38 1600K .......... .......... .......... .......... .......... 41% 21.6M 0s
00:51:38 1650K .......... .......... .......... .......... .......... 42% 17.1M 0s
00:51:38 1700K .......... .......... .......... .......... .......... 43% 25.3M 0s
00:51:38 1750K .......... .......... .......... .......... .......... 45% 17.6M 0s
00:51:38 1800K .......... .......... .......... .......... .......... 46% 18.6M 0s
00:51:38 1850K .......... .......... .......... .......... .......... 47% 12.4M 0s
00:51:38 1900K .......... .......... .......... .......... .......... 48% 28.0M 0s
00:51:38 1950K .......... .......... .......... .......... .......... 50% 14.8M 0s
00:51:38 2000K .......... .......... .......... .......... .......... 51% 18.4M 0s
00:51:38 2050K .......... .......... .......... .......... .......... 52% 26.2M 0s
00:51:38 2100K .......... .......... .......... .......... .......... 53% 10.6M 0s
00:51:38 2150K .......... .......... .......... .......... .......... 55% 25.2M 0s
00:51:38 2200K .......... .......... .......... .......... .......... 56% 19.1M 0s
00:51:38 2250K .......... .......... .......... .......... .......... 57% 18.9M 0s
00:51:38 2300K .......... .......... .......... .......... .......... 58% 26.3M 0s
00:51:38 2350K .......... .......... .......... .......... .......... 60% 10.6M 0s
00:51:38 2400K .......... .......... .......... .......... .......... 61% 17.3M 0s
00:51:38 2450K .......... .......... .......... .......... .......... 62% 28.2M 0s
00:51:38 2500K .......... .......... .......... .......... .......... 63% 19.0M 0s
00:51:38 2550K .......... .......... .......... .......... .......... 65% 26.2M 0s
00:51:38 2600K .......... .......... .......... .......... .......... 66% 14.8M 0s
00:51:38 2650K .......... .......... .......... .......... .......... 67% 13.5M 0s
00:51:38 2700K .......... .......... .......... .......... .......... 68% 21.3M 0s
00:51:38 2750K .......... .......... .......... .......... .......... 70% 18.5M 0s
00:51:38 2800K .......... .......... .......... .......... .......... 71% 25.8M 0s
00:51:38 2850K .......... .......... .......... .......... .......... 72% 15.3M 0s
00:51:38 2900K .......... .......... .......... .......... .......... 73% 11.2M 0s
00:51:38 2950K .......... .......... .......... .......... .......... 75% 28.3M 0s
00:51:38 3000K .......... .......... .......... .......... .......... 76% 31.4M 0s
00:51:38 3050K .......... .......... .......... .......... .......... 77% 17.3M 0s
00:51:38 3100K .......... .......... .......... .......... .......... 78% 12.7M 0s
00:51:38 3150K .......... .......... .......... .......... .......... 80% 12.6M 0s
00:51:38 3200K .......... .......... .......... .......... .......... 81% 33.2M 0s
00:51:38 3250K .......... .......... .......... .......... .......... 82% 20.9M 0s
00:51:38 3300K .......... .......... .......... .......... .......... 84% 23.8M 0s
00:51:38 3350K .......... .......... .......... .......... .......... 85% 15.6M 0s
00:51:38 3400K .......... .......... .......... .......... .......... 86% 10.9M 0s
00:51:38 3450K .......... .......... .......... .......... .......... 87% 23.9M 0s
00:51:38 3500K .......... .......... .......... .......... .......... 89% 27.4M 0s
00:51:38 3550K .......... .......... .......... .......... .......... 90% 22.6M 0s
00:51:38 3600K .......... .......... .......... .......... .......... 91% 13.1M 0s
00:51:38 3650K .......... .......... .......... .......... .......... 92% 12.4M 0s
00:51:38 3700K .......... .......... .......... .......... .......... 94% 32.6M 0s
00:51:38 3750K .......... .......... .......... .......... .......... 95% 22.0M 0s
00:51:38 3800K .......... .......... .......... .......... .......... 96% 20.5M 0s
00:51:38 3850K .......... .......... .......... .......... .......... 97% 14.1M 0s
00:51:38 3900K .......... .......... .......... .......... .......... 99% 12.4M 0s
00:51:38 3950K .......... .......... .......... ....... 100% 69.8M=0.2s
00:51:38
00:51:38 2026-02-25 00:51:38 (16.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:51:38
00:51:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:51:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:38 --2026-02-25 00:51:38-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:51:38 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:38 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:38 HTTP request sent, awaiting response... 200 OK
00:51:38 Length: 234962 (229K) [application/java-archive]
00:51:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:51:38
00:51:38 0K .......... .......... .......... .......... .......... 21% 16.5M 0s
00:51:38 50K .......... .......... .......... .......... .......... 43% 3.76M 0s
00:51:38 100K .......... .......... .......... .......... .......... 65% 18.9M 0s
00:51:38 150K .......... .......... .......... .......... .......... 87% 4.79M 0s
00:51:38 200K .......... .......... ......... 100% 15.6M=0.03s
00:51:38
00:51:38 2026-02-25 00:51:38 (7.33 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:51:38
00:51:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:51:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:38 --2026-02-25 00:51:38-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:51:38 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:38 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:39 Length: 192161 (188K) [application/java-archive]
00:51:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:51:39
00:51:39 0K .......... .......... .......... .......... .......... 26% 20.4M 0s
00:51:39 50K .......... .......... .......... .......... .......... 53% 3.70M 0s
00:51:39 100K .......... .......... .......... .......... .......... 79% 4.29M 0s
00:51:39 150K .......... .......... .......... ....... 100% 26.6M=0.03s
00:51:39
00:51:39 2026-02-25 00:51:39 (6.46 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:51:39
00:51:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:51:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:39 --2026-02-25 00:51:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:39 Length: 1037104 (1013K) [application/java-archive]
00:51:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:51:39
00:51:39 0K .......... .......... .......... .......... .......... 4% 16.3M 0s
00:51:39 50K .......... .......... .......... .......... .......... 9% 3.79M 0s
00:51:39 100K .......... .......... .......... .......... .......... 14% 14.1M 0s
00:51:39 150K .......... .......... .......... .......... .......... 19% 4.88M 0s
00:51:39 200K .......... .......... .......... .......... .......... 24% 16.7M 0s
00:51:39 250K .......... .......... .......... .......... .......... 29% 13.3M 0s
00:51:39 300K .......... .......... .......... .......... .......... 34% 17.6M 0s
00:51:39 350K .......... .......... .......... .......... .......... 39% 21.6M 0s
00:51:39 400K .......... .......... .......... .......... .......... 44% 24.8M 0s
00:51:39 450K .......... .......... .......... .......... .......... 49% 16.0M 0s
00:51:39 500K .......... .......... .......... .......... .......... 54% 11.0M 0s
00:51:39 550K .......... .......... .......... .......... .......... 59% 46.3M 0s
00:51:39 600K .......... .......... .......... .......... .......... 64% 15.7M 0s
00:51:39 650K .......... .......... .......... .......... .......... 69% 15.5M 0s
00:51:39 700K .......... .......... .......... .......... .......... 74% 18.4M 0s
00:51:39 750K .......... .......... .......... .......... .......... 78% 13.4M 0s
00:51:39 800K .......... .......... .......... .......... .......... 83% 35.0M 0s
00:51:39 850K .......... .......... .......... .......... .......... 88% 12.9M 0s
00:51:39 900K .......... .......... .......... .......... .......... 93% 19.3M 0s
00:51:39 950K .......... .......... .......... .......... .......... 98% 35.3M 0s
00:51:39 1000K .......... .. 100% 171M=0.07s
00:51:39
00:51:39 2026-02-25 00:51:39 (13.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:51:39
00:51:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:51:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:39 --2026-02-25 00:51:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:39 Length: 33040 (32K) [application/java-archive]
00:51:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:51:39
00:51:39 0K .......... .......... .......... .. 100% 21.8M=0.001s
00:51:39
00:51:39 2026-02-25 00:51:39 (21.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:51:39
00:51:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:51:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:39 --2026-02-25 00:51:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 13758 (13K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:51:40
00:51:40 0K .......... ... 100% 48.8M=0s
00:51:40
00:51:40 2026-02-25 00:51:40 (48.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-25 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 962220 (940K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... .......... .......... 5% 17.1M 0s
00:51:40 50K .......... .......... .......... .......... .......... 10% 3.82M 0s
00:51:40 100K .......... .......... .......... .......... .......... 15% 14.5M 0s
00:51:40 150K .......... .......... .......... .......... .......... 21% 4.82M 0s
00:51:40 200K .......... .......... .......... .......... .......... 26% 17.1M 0s
00:51:40 250K .......... .......... .......... .......... .......... 31% 12.8M 0s
00:51:40 300K .......... .......... .......... .......... .......... 37% 17.1M 0s
00:51:40 350K .......... .......... .......... .......... .......... 42% 17.0M 0s
00:51:40 400K .......... .......... .......... .......... .......... 47% 23.6M 0s
00:51:40 450K .......... .......... .......... .......... .......... 53% 13.4M 0s
00:51:40 500K .......... .......... .......... .......... .......... 58% 40.9M 0s
00:51:40 550K .......... .......... .......... .......... .......... 63% 13.4M 0s
00:51:40 600K .......... .......... .......... .......... .......... 69% 12.7M 0s
00:51:40 650K .......... .......... .......... .......... .......... 74% 25.7M 0s
00:51:40 700K .......... .......... .......... .......... .......... 79% 17.0M 0s
00:51:40 750K .......... .......... .......... .......... .......... 85% 34.6M 0s
00:51:40 800K .......... .......... .......... .......... .......... 90% 12.4M 0s
00:51:40 850K .......... .......... .......... .......... .......... 95% 14.7M 0s
00:51:40 900K .......... .......... .......... ......... 100% 294M=0.07s
00:51:40
00:51:40 2026-02-25 00:51:40 (13.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-25 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 30963 (30K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... 100% 21.2M=0.001s
00:51:40
00:51:40 2026-02-25 00:51:40 (21.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-25 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 241618 (236K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... .......... .......... 21% 19.1M 0s
00:51:40 50K .......... .......... .......... .......... .......... 42% 4.04M 0s
00:51:40 100K .......... .......... .......... .......... .......... 63% 13.5M 0s
00:51:40 150K .......... .......... .......... .......... .......... 84% 4.83M 0s
00:51:40 200K .......... .......... .......... ..... 100% 12.5M=0.03s
00:51:40
00:51:40 2026-02-25 00:51:40 (7.39 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-25 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 91685 (90K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:51:41
00:51:41 0K .......... .......... .......... .......... .......... 55% 20.7M 0s
00:51:41 50K .......... .......... .......... ......... 100% 3.08M=0.01s
00:51:41
00:51:41 2026-02-25 00:51:41 (5.88 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-25 00:51:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 66309 (65K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:51:41
00:51:41 0K .......... .......... .......... .......... .......... 77% 17.2M 0s
00:51:41 50K .......... .... 100% 17.4M=0.004s
00:51:41
00:51:41 2026-02-25 00:51:41 (17.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-25 00:51:41-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 593063 (579K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:51:41
00:51:41 0K .......... .......... .......... .......... .......... 8% 18.8M 0s
00:51:41 50K .......... .......... .......... .......... .......... 17% 3.82M 0s
00:51:41 100K .......... .......... .......... .......... .......... 25% 4.10M 0s
00:51:41 150K .......... .......... .......... .......... .......... 34% 15.7M 0s
00:51:41 200K .......... .......... .......... .......... .......... 43% 17.3M 0s
00:51:41 250K .......... .......... .......... .......... .......... 51% 12.8M 0s
00:51:41 300K .......... .......... .......... .......... .......... 60% 17.0M 0s
00:51:41 350K .......... .......... .......... .......... .......... 69% 20.5M 0s
00:51:41 400K .......... .......... .......... .......... .......... 77% 18.5M 0s
00:51:41 450K .......... .......... .......... .......... .......... 86% 17.1M 0s
00:51:41 500K .......... .......... .......... .......... .......... 94% 17.3M 0s
00:51:41 550K .......... .......... ......... 100% 27.1M=0.05s
00:51:41
00:51:41 2026-02-25 00:51:41 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-25 00:51:41-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 1688471 (1.6M) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 3% 17.4M 0s
00:51:42 50K .......... .......... .......... .......... .......... 6% 3.81M 0s
00:51:42 100K .......... .......... .......... .......... .......... 9% 4.22M 0s
00:51:42 150K .......... .......... .......... .......... .......... 12% 17.8M 0s
00:51:42 200K .......... .......... .......... .......... .......... 15% 13.5M 0s
00:51:42 250K .......... .......... .......... .......... .......... 18% 17.4M 0s
00:51:42 300K .......... .......... .......... .......... .......... 21% 11.5M 0s
00:51:42 350K .......... .......... .......... .......... .......... 24% 20.9M 0s
00:51:42 400K .......... .......... .......... .......... .......... 27% 18.4M 0s
00:51:42 450K .......... .......... .......... .......... .......... 30% 20.1M 0s
00:51:42 500K .......... .......... .......... .......... .......... 33% 21.3M 0s
00:51:42 550K .......... .......... .......... .......... .......... 36% 12.6M 0s
00:51:42 600K .......... .......... .......... .......... .......... 39% 30.3M 0s
00:51:42 650K .......... .......... .......... .......... .......... 42% 14.2M 0s
00:51:42 700K .......... .......... .......... .......... .......... 45% 17.4M 0s
00:51:42 750K .......... .......... .......... .......... .......... 48% 15.0M 0s
00:51:42 800K .......... .......... .......... .......... .......... 51% 19.9M 0s
00:51:42 850K .......... .......... .......... .......... .......... 54% 14.9M 0s
00:51:42 900K .......... .......... .......... .......... .......... 57% 26.8M 0s
00:51:42 950K .......... .......... .......... .......... .......... 60% 41.4M 0s
00:51:42 1000K .......... .......... .......... .......... .......... 63% 10.0M 0s
00:51:42 1050K .......... .......... .......... .......... .......... 66% 18.4M 0s
00:51:42 1100K .......... .......... .......... .......... .......... 69% 14.4M 0s
00:51:42 1150K .......... .......... .......... .......... .......... 72% 29.2M 0s
00:51:42 1200K .......... .......... .......... .......... .......... 75% 48.0M 0s
00:51:42 1250K .......... .......... .......... .......... .......... 78% 6.98M 0s
00:51:42 1300K .......... .......... .......... .......... .......... 81% 77.1M 0s
00:51:42 1350K .......... .......... .......... .......... .......... 84% 13.5M 0s
00:51:42 1400K .......... .......... .......... .......... .......... 87% 22.6M 0s
00:51:42 1450K .......... .......... .......... .......... .......... 90% 28.9M 0s
00:51:42 1500K .......... .......... .......... .......... .......... 94% 8.13M 0s
00:51:42 1550K .......... .......... .......... .......... .......... 97% 32.2M 0s
00:51:42 1600K .......... .......... .......... .......... ........ 100% 22.1M=0.1s
00:51:42
00:51:42 2026-02-25 00:51:42 (14.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-25 00:51:42-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:51:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 36400 (36K) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:51:42
00:51:42 0K .......... .......... .......... ..... 100% 19.2M=0.002s
00:51:42
00:51:42 2026-02-25 00:51:42 (19.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-25 00:51:42-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:51:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 79195 (77K) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 64% 17.2M 0s
00:51:42 50K .......... .......... ....... 100% 2.39M=0.01s
00:51:42
00:51:42 2026-02-25 00:51:42 (5.40 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-25 00:51:42-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:51:42 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:42 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 277829 (271K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 18% 19.5M 0s
00:51:43 50K .......... .......... .......... .......... .......... 36% 3.74M 0s
00:51:43 100K .......... .......... .......... .......... .......... 55% 16.7M 0s
00:51:43 150K .......... .......... .......... .......... .......... 73% 4.54M 0s
00:51:43 200K .......... .......... .......... .......... .......... 92% 16.7M 0s
00:51:43 250K .......... .......... . 100% 11.1M=0.03s
00:51:43
00:51:43 2026-02-25 00:51:43 (7.78 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-25 00:51:43-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:51:43 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:43 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 579673 (566K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 8% 17.7M 0s
00:51:43 50K .......... .......... .......... .......... .......... 17% 3.60M 0s
00:51:43 100K .......... .......... .......... .......... .......... 26% 16.4M 0s
00:51:43 150K .......... .......... .......... .......... .......... 35% 4.49M 0s
00:51:43 200K .......... .......... .......... .......... .......... 44% 17.0M 0s
00:51:43 250K .......... .......... .......... .......... .......... 52% 10.5M 0s
00:51:43 300K .......... .......... .......... .......... .......... 61% 17.2M 0s
00:51:43 350K .......... .......... .......... .......... .......... 70% 19.1M 0s
00:51:43 400K .......... .......... .......... .......... .......... 79% 18.6M 0s
00:51:43 450K .......... .......... .......... .......... .......... 88% 17.4M 0s
00:51:43 500K .......... .......... .......... .......... .......... 97% 17.7M 0s
00:51:43 550K .......... ...... 100% 359M=0.05s
00:51:43
00:51:43 2026-02-25 00:51:43 (10.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-25 00:51:43-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:51:43 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:43 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 175836 (172K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 29% 3.51M 0s
00:51:43 50K .......... .......... .......... .......... .......... 58% 7.51M 0s
00:51:43 100K .......... .......... .......... .......... .......... 87% 5.07M 0s
00:51:43 150K .......... .......... . 100% 11.9M=0.03s
00:51:43
00:51:43 2026-02-25 00:51:43 (5.27 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-25 00:51:43-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:43 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:43 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 889211 (868K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 5% 20.8M 0s
00:51:43 50K .......... .......... .......... .......... .......... 11% 3.72M 0s
00:51:43 100K .......... .......... .......... .......... .......... 17% 4.29M 0s
00:51:43 150K .......... .......... .......... .......... .......... 23% 16.4M 0s
00:51:43 200K .......... .......... .......... .......... .......... 28% 17.2M 0s
00:51:43 250K .......... .......... .......... .......... .......... 34% 10.5M 0s
00:51:43 300K .......... .......... .......... .......... .......... 40% 16.5M 0s
00:51:43 350K .......... .......... .......... .......... .......... 46% 26.2M 0s
00:51:43 400K .......... .......... .......... .......... .......... 51% 17.3M 0s
00:51:43 450K .......... .......... .......... .......... .......... 57% 23.3M 0s
00:51:43 500K .......... .......... .......... .......... .......... 63% 13.0M 0s
00:51:43 550K .......... .......... .......... .......... .......... 69% 25.0M 0s
00:51:43 600K .......... .......... .......... .......... .......... 74% 12.6M 0s
00:51:43 650K .......... .......... .......... .......... .......... 80% 17.0M 0s
00:51:43 700K .......... .......... .......... .......... .......... 86% 41.0M 0s
00:51:43 750K .......... .......... .......... .......... .......... 92% 14.2M 0s
00:51:43 800K .......... .......... .......... .......... .......... 97% 19.3M 0s
00:51:43 850K .......... ........ 100% 297M=0.07s
00:51:43
00:51:43 2026-02-25 00:51:43 (12.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-25 00:51:43-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:51:44 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:44 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 736051 (719K) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 6% 18.4M 0s
00:51:44 50K .......... .......... .......... .......... .......... 13% 3.79M 0s
00:51:44 100K .......... .......... .......... .......... .......... 20% 16.7M 0s
00:51:44 150K .......... .......... .......... .......... .......... 27% 4.60M 0s
00:51:44 200K .......... .......... .......... .......... .......... 34% 10.5M 0s
00:51:44 250K .......... .......... .......... .......... .......... 41% 24.9M 0s
00:51:44 300K .......... .......... .......... .......... .......... 48% 12.6M 0s
00:51:44 350K .......... .......... .......... .......... .......... 55% 26.0M 0s
00:51:44 400K .......... .......... .......... .......... .......... 62% 16.8M 0s
00:51:44 450K .......... .......... .......... .......... .......... 69% 17.1M 0s
00:51:44 500K .......... .......... .......... .......... .......... 76% 16.6M 0s
00:51:44 550K .......... .......... .......... .......... .......... 83% 16.3M 0s
00:51:44 600K .......... .......... .......... .......... .......... 90% 25.1M 0s
00:51:44 650K .......... .......... .......... .......... .......... 97% 14.8M 0s
00:51:44 700K .......... ........ 100% 109M=0.06s
00:51:44
00:51:44 2026-02-25 00:51:44 (12.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:51:44
00:51:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:51:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:44 --2026-02-25 00:51:44-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:51:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 331034 (323K) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 15% 18.1M 0s
00:51:44 50K .......... .......... .......... .......... .......... 30% 3.78M 0s
00:51:44 100K .......... .......... .......... .......... .......... 46% 13.7M 0s
00:51:44 150K .......... .......... .......... .......... .......... 61% 4.88M 0s
00:51:44 200K .......... .......... .......... .......... .......... 77% 17.3M 0s
00:51:44 250K .......... .......... .......... .......... .......... 92% 13.4M 0s
00:51:44 300K .......... .......... ... 100% 26.9M=0.04s
00:51:44
00:51:44 2026-02-25 00:51:44 (8.65 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:51:44
00:51:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:51:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:44 --2026-02-25 00:51:44-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:51:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 6749842 (6.4M) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 0% 20.9M 0s
00:51:44 50K .......... .......... .......... .......... .......... 1% 3.68M 1s
00:51:44 100K .......... .......... .......... .......... .......... 2% 4.36M 1s
00:51:44 150K .......... .......... .......... .......... .......... 3% 20.2M 1s
00:51:44 200K .......... .......... .......... .......... .......... 3% 13.2M 1s
00:51:44 250K .......... .......... .......... .......... .......... 4% 13.6M 1s
00:51:44 300K .......... .......... .......... .......... .......... 5% 17.7M 1s
00:51:44 350K .......... .......... .......... .......... .......... 6% 18.3M 1s
00:51:44 400K .......... .......... .......... .......... .......... 6% 25.3M 1s
00:51:44 450K .......... .......... .......... .......... .......... 7% 18.5M 1s
00:51:44 500K .......... .......... .......... .......... .......... 8% 13.6M 1s
00:51:44 550K .......... .......... .......... .......... .......... 9% 13.1M 1s
00:51:44 600K .......... .......... .......... .......... .......... 9% 19.2M 1s
00:51:44 650K .......... .......... .......... .......... .......... 10% 51.8M 0s
00:51:44 700K .......... .......... .......... .......... .......... 11% 13.5M 0s
00:51:44 750K .......... .......... .......... .......... .......... 12% 17.8M 0s
00:51:44 800K .......... .......... .......... .......... .......... 12% 14.0M 0s
00:51:44 850K .......... .......... .......... .......... .......... 13% 17.1M 0s
00:51:44 900K .......... .......... .......... .......... .......... 14% 48.2M 0s
00:51:44 950K .......... .......... .......... .......... .......... 15% 21.5M 0s
00:51:44 1000K .......... .......... .......... .......... .......... 15% 17.7M 0s
00:51:44 1050K .......... .......... .......... .......... .......... 16% 10.6M 0s
00:51:44 1100K .......... .......... .......... .......... .......... 17% 12.8M 0s
00:51:44 1150K .......... .......... .......... .......... .......... 18% 61.0M 0s
00:51:44 1200K .......... .......... .......... .......... .......... 18% 32.3M 0s
00:51:44 1250K .......... .......... .......... .......... .......... 19% 12.3M 0s
00:51:44 1300K .......... .......... .......... .......... .......... 20% 28.7M 0s
00:51:44 1350K .......... .......... .......... .......... .......... 21% 9.12M 0s
00:51:44 1400K .......... .......... .......... .......... .......... 21% 18.2M 0s
00:51:44 1450K .......... .......... .......... .......... .......... 22% 17.7M 0s
00:51:44 1500K .......... .......... .......... .......... .......... 23% 17.6M 0s
00:51:44 1550K .......... .......... .......... .......... .......... 24% 17.6M 0s
00:51:44 1600K .......... .......... .......... .......... .......... 25% 19.7M 0s
00:51:44 1650K .......... .......... .......... .......... .......... 25% 15.6M 0s
00:51:44 1700K .......... .......... .......... .......... .......... 26% 26.0M 0s
00:51:44 1750K .......... .......... .......... .......... .......... 27% 17.8M 0s
00:51:44 1800K .......... .......... .......... .......... .......... 28% 17.7M 0s
00:51:44 1850K .......... .......... .......... .......... .......... 28% 16.2M 0s
00:51:44 1900K .......... .......... .......... .......... .......... 29% 12.3M 0s
00:51:44 1950K .......... .......... .......... .......... .......... 30% 36.6M 0s
00:51:44 2000K .......... .......... .......... .......... .......... 31% 16.4M 0s
00:51:44 2050K .......... .......... .......... .......... .......... 31% 14.4M 0s
00:51:44 2100K .......... .......... .......... .......... .......... 32% 34.9M 0s
00:51:44 2150K .......... .......... .......... .......... .......... 33% 11.2M 0s
00:51:45 2200K .......... .......... .......... .......... .......... 34% 25.4M 0s
00:51:45 2250K .......... .......... .......... .......... .......... 34% 14.6M 0s
00:51:45 2300K .......... .......... .......... .......... .......... 35% 20.1M 0s
00:51:45 2350K .......... .......... .......... .......... .......... 36% 22.6M 0s
00:51:45 2400K .......... .......... .......... .......... .......... 37% 13.6M 0s
00:51:45 2450K .......... .......... .......... .......... .......... 37% 27.6M 0s
00:51:45 2500K .......... .......... .......... .......... .......... 38% 19.0M 0s
00:51:45 2550K .......... .......... .......... .......... .......... 39% 23.5M 0s
00:51:45 2600K .......... .......... .......... .......... .......... 40% 12.4M 0s
00:51:45 2650K .......... .......... .......... .......... .......... 40% 16.0M 0s
00:51:45 2700K .......... .......... .......... .......... .......... 41% 25.3M 0s
00:51:45 2750K .......... .......... .......... .......... .......... 42% 20.2M 0s
00:51:45 2800K .......... .......... .......... .......... .......... 43% 22.4M 0s
00:51:45 2850K .......... .......... .......... .......... .......... 43% 15.9M 0s
00:51:45 2900K .......... .......... .......... .......... .......... 44% 25.1M 0s
00:51:45 2950K .......... .......... .......... .......... .......... 45% 12.6M 0s
00:51:45 3000K .......... .......... .......... .......... .......... 46% 17.3M 0s
00:51:45 3050K .......... .......... .......... .......... .......... 47% 21.6M 0s
00:51:45 3100K .......... .......... .......... .......... .......... 47% 14.5M 0s
00:51:45 3150K .......... .......... .......... .......... .......... 48% 36.6M 0s
00:51:45 3200K .......... .......... .......... .......... .......... 49% 11.9M 0s
00:51:45 3250K .......... .......... .......... .......... .......... 50% 15.9M 0s
00:51:45 3300K .......... .......... .......... .......... .......... 50% 31.4M 0s
00:51:45 3350K .......... .......... .......... .......... .......... 51% 14.1M 0s
00:51:45 3400K .......... .......... .......... .......... .......... 52% 34.8M 0s
00:51:45 3450K .......... .......... .......... .......... .......... 53% 12.3M 0s
00:51:45 3500K .......... .......... .......... .......... .......... 53% 21.0M 0s
00:51:45 3550K .......... .......... .......... .......... .......... 54% 20.8M 0s
00:51:45 3600K .......... .......... .......... .......... .......... 55% 11.5M 0s
00:51:45 3650K .......... .......... .......... .......... .......... 56% 31.0M 0s
00:51:45 3700K .......... .......... .......... .......... .......... 56% 16.3M 0s
00:51:45 3750K .......... .......... .......... .......... .......... 57% 20.3M 0s
00:51:45 3800K .......... .......... .......... .......... .......... 58% 25.8M 0s
00:51:45 3850K .......... .......... .......... .......... .......... 59% 12.8M 0s
00:51:45 3900K .......... .......... .......... .......... .......... 59% 18.4M 0s
00:51:45 3950K .......... .......... .......... .......... .......... 60% 15.7M 0s
00:51:45 4000K .......... .......... .......... .......... .......... 61% 24.2M 0s
00:51:45 4050K .......... .......... .......... .......... .......... 62% 21.7M 0s
00:51:45 4100K .......... .......... .......... .......... .......... 62% 14.3M 0s
00:51:45 4150K .......... .......... .......... .......... .......... 63% 20.8M 0s
00:51:45 4200K .......... .......... .......... .......... .......... 64% 14.2M 0s
00:51:45 4250K .......... .......... .......... .......... .......... 65% 18.0M 0s
00:51:45 4300K .......... .......... .......... .......... .......... 65% 26.1M 0s
00:51:45 4350K .......... .......... .......... .......... .......... 66% 12.1M 0s
00:51:45 4400K .......... .......... .......... .......... .......... 67% 32.7M 0s
00:51:45 4450K .......... .......... .......... .......... .......... 68% 14.5M 0s
00:51:45 4500K .......... .......... .......... .......... .......... 69% 23.0M 0s
00:51:45 4550K .......... .......... .......... .......... .......... 69% 26.8M 0s
00:51:45 4600K .......... .......... .......... .......... .......... 70% 26.6M 0s
00:51:45 4650K .......... .......... .......... .......... .......... 71% 10.9M 0s
00:51:45 4700K .......... .......... .......... .......... .......... 72% 11.6M 0s
00:51:45 4750K .......... .......... .......... .......... .......... 72% 28.8M 0s
00:51:45 4800K .......... .......... .......... .......... .......... 73% 24.8M 0s
00:51:45 4850K .......... .......... .......... .......... .......... 74% 32.4M 0s
00:51:45 4900K .......... .......... .......... .......... .......... 75% 12.1M 0s
00:51:45 4950K .......... .......... .......... .......... .......... 75% 31.2M 0s
00:51:45 5000K .......... .......... .......... .......... .......... 76% 12.4M 0s
00:51:45 5050K .......... .......... .......... .......... .......... 77% 18.6M 0s
00:51:45 5100K .......... .......... .......... .......... .......... 78% 17.9M 0s
00:51:45 5150K .......... .......... .......... .......... .......... 78% 18.0M 0s
00:51:45 5200K .......... .......... .......... .......... .......... 79% 27.6M 0s
00:51:45 5250K .......... .......... .......... .......... .......... 80% 12.9M 0s
00:51:45 5300K .......... .......... .......... .......... .......... 81% 25.8M 0s
00:51:45 5350K .......... .......... .......... .......... .......... 81% 25.4M 0s
00:51:45 5400K .......... .......... .......... .......... .......... 82% 11.5M 0s
00:51:45 5450K .......... .......... .......... .......... .......... 83% 27.7M 0s
00:51:45 5500K .......... .......... .......... .......... .......... 84% 18.6M 0s
00:51:45 5550K .......... .......... .......... .......... .......... 84% 16.2M 0s
00:51:45 5600K .......... .......... .......... .......... .......... 85% 15.3M 0s
00:51:45 5650K .......... .......... .......... .......... .......... 86% 16.2M 0s
00:51:45 5700K .......... .......... .......... .......... .......... 87% 16.3M 0s
00:51:45 5750K .......... .......... .......... .......... .......... 87% 34.3M 0s
00:51:45 5800K .......... .......... .......... .......... .......... 88% 16.8M 0s
00:51:45 5850K .......... .......... .......... .......... .......... 89% 25.4M 0s
00:51:45 5900K .......... .......... .......... .......... .......... 90% 13.6M 0s
00:51:45 5950K .......... .......... .......... .......... .......... 91% 12.0M 0s
00:51:45 6000K .......... .......... .......... .......... .......... 91% 24.4M 0s
00:51:45 6050K .......... .......... .......... .......... .......... 92% 24.8M 0s
00:51:45 6100K .......... .......... .......... .......... .......... 93% 25.5M 0s
00:51:45 6150K .......... .......... .......... .......... .......... 94% 14.0M 0s
00:51:45 6200K .......... .......... .......... .......... .......... 94% 20.6M 0s
00:51:45 6250K .......... .......... .......... .......... .......... 95% 15.8M 0s
00:51:45 6300K .......... .......... .......... .......... .......... 96% 22.2M 0s
00:51:45 6350K .......... .......... .......... .......... .......... 97% 18.2M 0s
00:51:45 6400K .......... .......... .......... .......... .......... 97% 15.6M 0s
00:51:45 6450K .......... .......... .......... .......... .......... 98% 19.9M 0s
00:51:45 6500K .......... .......... .......... .......... .......... 99% 12.9M 0s
00:51:45 6550K .......... .......... .......... .......... . 100% 28.9M=0.4s
00:51:45
00:51:45 2026-02-25 00:51:45 (17.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:51:45
00:51:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:51:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:45 --2026-02-25 00:51:45-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:51:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:45 HTTP request sent, awaiting response... 200 OK
00:51:45 Length: 1732435 (1.7M) [application/java-archive]
00:51:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:51:45
00:51:45 0K .......... .......... .......... .......... .......... 2% 3.51M 0s
00:51:45 50K .......... .......... .......... .......... .......... 5% 8.52M 0s
00:51:45 100K .......... .......... .......... .......... .......... 8% 4.49M 0s
00:51:45 150K .......... .......... .......... .......... .......... 11% 10.9M 0s
00:51:45 200K .......... .......... .......... .......... .......... 14% 10.6M 0s
00:51:45 250K .......... .......... .......... .......... .......... 17% 13.1M 0s
00:51:45 300K .......... .......... .......... .......... .......... 20% 15.5M 0s
00:51:45 350K .......... .......... .......... .......... .......... 23% 22.3M 0s
00:51:45 400K .......... .......... .......... .......... .......... 26% 16.9M 0s
00:51:45 450K .......... .......... .......... .......... .......... 29% 24.4M 0s
00:51:45 500K .......... .......... .......... .......... .......... 32% 10.8M 0s
00:51:45 550K .......... .......... .......... .......... .......... 35% 23.0M 0s
00:51:45 600K .......... .......... .......... .......... .......... 38% 22.6M 0s
00:51:45 650K .......... .......... .......... .......... .......... 41% 12.9M 0s
00:51:45 700K .......... .......... .......... .......... .......... 44% 53.0M 0s
00:51:45 750K .......... .......... .......... .......... .......... 47% 10.3M 0s
00:51:45 800K .......... .......... .......... .......... .......... 50% 23.0M 0s
00:51:45 850K .......... .......... .......... .......... .......... 53% 19.5M 0s
00:51:45 900K .......... .......... .......... .......... .......... 56% 11.5M 0s
00:51:45 950K .......... .......... .......... .......... .......... 59% 235M 0s
00:51:45 1000K .......... .......... .......... .......... .......... 62% 20.5M 0s
00:51:45 1050K .......... .......... .......... .......... .......... 65% 11.2M 0s
00:51:45 1100K .......... .......... .......... .......... .......... 67% 19.4M 0s
00:51:45 1150K .......... .......... .......... .......... .......... 70% 11.8M 0s
00:51:45 1200K .......... .......... .......... .......... .......... 73% 95.0M 0s
00:51:45 1250K .......... .......... .......... .......... .......... 76% 23.4M 0s
00:51:45 1300K .......... .......... .......... .......... .......... 79% 11.1M 0s
00:51:45 1350K .......... .......... .......... .......... .......... 82% 12.1M 0s
00:51:45 1400K .......... .......... .......... .......... .......... 85% 146M 0s
00:51:45 1450K .......... .......... .......... .......... .......... 88% 16.8M 0s
00:51:45 1500K .......... .......... .......... .......... .......... 91% 18.2M 0s
00:51:45 1550K .......... .......... .......... .......... .......... 94% 12.8M 0s
00:51:45 1600K .......... .......... .......... .......... .......... 97% 12.1M 0s
00:51:45 1650K .......... .......... .......... .......... . 100% 23.8M=0.1s
00:51:45
00:51:45 2026-02-25 00:51:45 (13.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:51:45
00:51:45 + for x in *.jar
00:51:45 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:51:45 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:51:45 ++ deactivate nondestructive
00:51:45 ++ '[' -n '' ']'
00:51:45 ++ '[' -n '' ']'
00:51:45 ++ hash -r
00:51:45 ++ '[' -n '' ']'
00:51:45 ++ unset VIRTUAL_ENV
00:51:45 ++ unset VIRTUAL_ENV_PROMPT
00:51:45 ++ '[' '!' nondestructive = nondestructive ']'
00:51:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:51:45 ++ export VIRTUAL_ENV
00:51:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:45 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:45 ++ export PATH
00:51:45 ++ '[' -n '' ']'
00:51:45 ++ '[' -z '' ']'
00:51:45 ++ _OLD_VIRTUAL_PS1=
00:51:45 ++ PS1='(.venv3) '
00:51:45 ++ export PS1
00:51:45 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:51:45 ++ export VIRTUAL_ENV_PROMPT
00:51:45 ++ hash -r
00:51:45 + pip install -U pip
00:51:45 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:51:46 Collecting pip
00:51:46 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:51:46 Installing collected packages: pip
00:51:46 Attempting uninstall: pip
00:51:46 Found existing installation: pip 22.3.1
00:51:46 Uninstalling pip-22.3.1:
00:51:46 Successfully uninstalled pip-22.3.1
00:51:47 Successfully installed pip-26.0.1
00:51:47 WARNING: There was an error checking the latest version of pip.
00:51:47 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:51:47 Collecting zeroc-ice==3.6.5
00:51:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:51:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.9 MB/s 0:00:01
00:51:50 Installing collected packages: zeroc-ice
00:51:50 Successfully installed zeroc-ice-3.6.5
00:51:50 + pip install markdown
00:51:51 Collecting markdown
00:51:51 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:51:51 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:51:51 Installing collected packages: markdown
00:51:51 Successfully installed markdown-3.10.2
00:51:51 + pip install reportlab
00:51:52 Collecting reportlab
00:51:52 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:51:52 Collecting pillow>=9.0.0 (from reportlab)
00:51:52 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:51:52 Collecting charset-normalizer (from reportlab)
00:51:52 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:51:52 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:51:52 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:51:52 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:51:53 Installing collected packages: pillow, charset-normalizer, reportlab
00:51:53
00:51:53 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:51:54 + pip install omego
00:51:54 Collecting omego
00:51:54 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:51:54 Collecting future (from omego)
00:51:54 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:51:54 Collecting yaclifw>=0.1.1 (from omego)
00:51:54 Using cached yaclifw-0.2.0-py3-none-any.whl
00:51:54 Collecting six (from yaclifw>=0.1.1->omego)
00:51:54 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:51:54 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:51:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:51:55 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:51:55 Installing collected packages: six, future, yaclifw, omego
00:51:55
00:51:55 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:51:55 + pip install tables
00:51:55 Collecting tables
00:51:56 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:51:56 Collecting numpy>=1.20.0 (from tables)
00:51:56 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:51:56 Collecting numexpr>=2.6.2 (from tables)
00:51:56 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:51:56 Collecting packaging (from tables)
00:51:56 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:51:56 Collecting py-cpuinfo (from tables)
00:51:56 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:51:56 Collecting blosc2>=2.3.0 (from tables)
00:51:56 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:51:56 Collecting ndindex (from blosc2>=2.3.0->tables)
00:51:56 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:51:57 Collecting msgpack (from blosc2>=2.3.0->tables)
00:51:57 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:51:57 Collecting requests (from blosc2>=2.3.0->tables)
00:51:57 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:51:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:51:57 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:51:57 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:51:57 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:51:57 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:51:57 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:51:57 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:51:57 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:51:57 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:51:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:51:58 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:51:58 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:51:58 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:51:58 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:51:58 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:51:58 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:51:58 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:52:01
00:52:01 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.0 urllib3-2.6.3
00:52:01 + pip install jinja2
00:52:02 Collecting jinja2
00:52:02 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:52:02 Collecting MarkupSafe>=2.0 (from jinja2)
00:52:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:52:02 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:52:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:52:02 Installing collected packages: MarkupSafe, jinja2
00:52:02
00:52:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:52:02 + pip install omero-py
00:52:02 Collecting omero-py
00:52:02 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:52:02 Collecting appdirs (from omero-py)
00:52:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:52:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:52:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:52:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:52:03 Collecting PyYAML (from omero-py)
00:52:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:52:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:52:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:52:03 Collecting portalocker (from omero-py)
00:52:03 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:52:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:52:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:52:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:52:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:52:03 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:52:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:52:03 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:52:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:52:03 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:52:05
00:52:05 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:52:05 + pip install pyarrow
00:52:05 Collecting pyarrow
00:52:05 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:52:05 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:52:06 Installing collected packages: pyarrow
00:52:07 Successfully installed pyarrow-23.0.1
00:52:07 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:52:08 Collecting omero-metadata
00:52:08 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-pl6vvi9a/omero-metadata_8c7b398a1fdb4ca4bdf59bef09f927b6
00:52:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-pl6vvi9a/omero-metadata_8c7b398a1fdb4ca4bdf59bef09f927b6
00:52:09 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f60520405162e777c1ac2c4491b4047b934481dd
00:52:09 Installing build dependencies: started
00:52:10 Installing build dependencies: finished with status 'done'
00:52:10 Getting requirements to build wheel: started
00:52:10 Getting requirements to build wheel: finished with status 'done'
00:52:10 Preparing metadata (pyproject.toml): started
00:52:11 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:52:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:52:11 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:52:11 Collecting pandas (from omero-metadata)
00:52:11 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:52:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:52:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:52:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:52:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:52:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:52:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:52:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:52:11 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:52:11 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:52:11 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:52:11 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:52:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:52:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:52:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:52:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:52:11 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:52:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:52:12 Building wheels for collected packages: omero-metadata
00:52:12 Building wheel for omero-metadata (pyproject.toml): started
00:52:12 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:52:12 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=9cc92f03b912fc89aedae023cba9af278aca12c93d0f66de0e940ae57cbe856c
00:52:12 Stored in directory: /tmp/pip-ephem-wheel-cache-u0u1mju2/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:52:12 Successfully built omero-metadata
00:52:12 Installing collected packages: python-dateutil, pandas, omero-metadata
00:52:17
00:52:17 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:52:17 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:52:17 Collecting omero-cli-render
00:52:17 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-3fskefsz/omero-cli-render_961e3c01b24c4628b748aa69f6200f62
00:52:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-3fskefsz/omero-cli-render_961e3c01b24c4628b748aa69f6200f62
00:52:18 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:18 Switched to a new branch 'merge_ci'
00:52:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:18 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit ffd1ed4593d9890f573e6b43a8577edc5ccf24cb
00:52:18 Installing build dependencies: started
00:52:19 Installing build dependencies: finished with status 'done'
00:52:19 Getting requirements to build wheel: started
00:52:19 Getting requirements to build wheel: finished with status 'done'
00:52:19 Preparing metadata (pyproject.toml): started
00:52:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:52:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:52:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:52:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:52:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:52:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:52:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:52:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:52:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:52:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:52:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:52:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:52:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:52:20 Building wheels for collected packages: omero-cli-render
00:52:20 Building wheel for omero-cli-render (pyproject.toml): started
00:52:20 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:52:20 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=2f1c49b5752571e2cf1fb8657dd36b4bea047406afa98ff31954522e87eb79fc
00:52:20 Stored in directory: /tmp/pip-ephem-wheel-cache-xfc0duc5/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:52:20 Successfully built omero-cli-render
00:52:20 Installing collected packages: omero-cli-render
00:52:20 Successfully installed omero-cli-render-0.8.2.dev0
00:52:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:52:20 Collecting omero-cli-duplicate
00:52:20 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-k87099jz/omero-cli-duplicate_b3d3ebcdba2a447480933863cf625b35
00:52:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-k87099jz/omero-cli-duplicate_b3d3ebcdba2a447480933863cf625b35
00:52:21 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:21 Switched to a new branch 'merge_ci'
00:52:21 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:21 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 083ab0b6719559d51a0a3fc4daab810ab536c0ed
00:52:21 Installing build dependencies: started
00:52:22 Installing build dependencies: finished with status 'done'
00:52:22 Getting requirements to build wheel: started
00:52:22 Getting requirements to build wheel: finished with status 'done'
00:52:22 Preparing metadata (pyproject.toml): started
00:52:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:23 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:52:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:52:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:52:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:52:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:52:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:52:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:52:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:52:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:52:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:52:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:52:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:52:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:52:23 Building wheels for collected packages: omero-cli-duplicate
00:52:23 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:52:23 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:52:23 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=dba3b74e15e06bd86ec9a3e1d5dcebd4eb335664e471c1051e3f4d9200b9b04b
00:52:23 Stored in directory: /tmp/pip-ephem-wheel-cache-pm7pn76a/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:52:23 Successfully built omero-cli-duplicate
00:52:23 Installing collected packages: omero-cli-duplicate
00:52:23 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:52:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:52:23 Collecting omero-cli-zarr
00:52:23 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-sxsvl71y/omero-cli-zarr_7303aa6f527041e88b4d7350dfda9c21
00:52:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-sxsvl71y/omero-cli-zarr_7303aa6f527041e88b4d7350dfda9c21
00:52:24 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:24 Switched to a new branch 'merge_ci'
00:52:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:24 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit d95fc33da178ad82213c34a79d4c6222da09996a
00:52:24 Installing build dependencies: started
00:52:25 Installing build dependencies: finished with status 'done'
00:52:25 Getting requirements to build wheel: started
00:52:25 Getting requirements to build wheel: finished with status 'done'
00:52:25 Installing backend dependencies: started
00:52:26 Installing backend dependencies: finished with status 'done'
00:52:26 Preparing metadata (pyproject.toml): started
00:52:26 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:52:27 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:52:27 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:52:27 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.2)
00:52:27 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:27 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:52:27 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:27 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:52:27 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:27 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:52:28 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:28 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:52:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:52:28 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:28 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:52:28 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:28 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:52:29 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:52:29 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:52:29 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:52:29 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:52:29 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:52:29 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:52:29 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:52:29 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:29 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:52:30 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:52:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:52:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:52:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:52:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:52:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:52:30 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:52:30 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Downloading aiobotocore-3.2.0-py3-none-any.whl.metadata (26 kB)
00:52:30 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:52:30 Collecting botocore<1.42.56,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Downloading botocore-1.42.55-py3-none-any.whl.metadata (5.9 kB)
00:52:30 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:52:30 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:30 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:52:31 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:31 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:52:31 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:31 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:52:31 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:31 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:52:31 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:31 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:52:31 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:31 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:52:32 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:52:32 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:32 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:52:32 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:32 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:52:32 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.56,>=1.42.53->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:52:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:52:32 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.11)
00:52:32 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:32 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:52:33 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:52:33 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:52:33 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:52:33 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Downloading tifffile-2026.2.24-py3-none-any.whl.metadata (31 kB)
00:52:33 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:52:33 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:33 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:52:34 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:34 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:52:34 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:52:34 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:52:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.4)
00:52:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.1.4)
00:52:34 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:52:34 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:52:34 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:52:34 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:52:34 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:52:34 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:52:34 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:52:34 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:52:34 Downloading aiobotocore-3.2.0-py3-none-any.whl (87 kB)
00:52:34 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:52:34 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:52:34 Downloading botocore-1.42.55-py3-none-any.whl (14.6 MB)
00:52:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.6/14.6 MB 20.2 MB/s 0:00:00
00:52:35 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:52:35 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:52:35 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:52:35 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:52:35 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:52:35 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:52:35 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:52:35 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:52:35 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:52:35 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:52:35 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:52:35 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
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00:52:36 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:52:36 Downloading tifffile-2026.2.24-py3-none-any.whl (243 kB)
00:52:36 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:52:36 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
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00:52:36 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:52:36 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:52:36 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:52:37 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:52:37 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:52:37 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:52:37 Building wheels for collected packages: omero-cli-zarr
00:52:37 Building wheel for omero-cli-zarr (pyproject.toml): started
00:52:37 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:52:37 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev160+gd95fc33-py3-none-any.whl size=38171 sha256=24880fc84ddc59036051a64ccc7560b80ee452083bb8bd0aa77fa1dab5f386c7
00:52:37 Stored in directory: /tmp/pip-ephem-wheel-cache-6akp_lf8/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:52:37 Successfully built omero-cli-zarr
00:52:37 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:52:47
00:52:47 Successfully installed aiobotocore-3.2.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.55 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev160+gd95fc33 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.2.24 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:52:47 + pip install omero-certificates
00:52:48 Collecting omero-certificates
00:52:48 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:52:48 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:52:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:52:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:52:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:52:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:52:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:52:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:52:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:52:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:52:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:52:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:52:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:52:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:52:48 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:52:48 Installing collected packages: omero-certificates
00:52:48 Successfully installed omero-certificates-0.4.0
00:52:48 + for x in *.tar.gz
00:52:48 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:52:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:52:48 Installing build dependencies: started
00:52:51 Installing build dependencies: finished with status 'done'
00:52:51 Getting requirements to build wheel: started
00:52:51 Getting requirements to build wheel: finished with status 'done'
00:52:51 Preparing metadata (pyproject.toml): started
00:52:51 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:52:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:52:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:52:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:52:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:52:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:52:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:52:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:52:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:52:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:52:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:52:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:52:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:52:51 Building wheels for collected packages: omero-dropbox
00:52:51 Building wheel for omero-dropbox (pyproject.toml): started
00:52:51 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:52:51 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=a788d709246d5ecec853709be9de677ad832698be9c42ce1a4a4979474e0ac8b
00:52:51 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:52:51 Successfully built omero-dropbox
00:52:51 Installing collected packages: omero-dropbox
00:52:51 Successfully installed omero-dropbox-5.7.1.dev0
00:52:52 + for x in *.tar.gz
00:52:52 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:52:52 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:52:52 Installing build dependencies: started
00:52:53 Installing build dependencies: finished with status 'done'
00:52:53 Getting requirements to build wheel: started
00:52:53 Getting requirements to build wheel: finished with status 'done'
00:52:53 Preparing metadata (pyproject.toml): started
00:52:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:53 Building wheels for collected packages: omero_marshal
00:52:53 Building wheel for omero_marshal (pyproject.toml): started
00:52:54 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:52:54 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=da00501fabada74b23c8b053ac65390be604dde039bd4b43c69d7be052f8f755
00:52:54 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:52:54 Successfully built omero_marshal
00:52:54 Installing collected packages: omero_marshal
00:52:54 Successfully installed omero_marshal-0.9.2.dev0
00:52:54 + for x in *.tar.gz
00:52:54 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:52:54 Processing ./omero_py-5.22.1.dev0.tar.gz
00:52:54 Installing build dependencies: started
00:52:55 Installing build dependencies: finished with status 'done'
00:52:55 Getting requirements to build wheel: started
00:52:56 Getting requirements to build wheel: finished with status 'done'
00:52:56 Preparing metadata (pyproject.toml): started
00:52:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:52:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:52:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:52:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:52:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:52:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:52:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:52:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:52:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:52:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:52:56 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:52:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:52:56 Building wheels for collected packages: omero-py
00:52:56 Building wheel for omero-py (pyproject.toml): started
00:52:57 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:52:57 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=704f9bbd9c0e281a60dcfc3f2f24dcef873c58dfb3e0196572d838f318c1b654
00:52:57 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:52:57 Successfully built omero-py
00:52:57 Installing collected packages: omero-py
00:52:57 Attempting uninstall: omero-py
00:52:57 Found existing installation: omero-py 5.22.0
00:52:57 Uninstalling omero-py-5.22.0:
00:52:57 Successfully uninstalled omero-py-5.22.0
00:52:59 Successfully installed omero-py-5.22.1.dev0
00:52:59 + for x in *.tar.gz
00:52:59 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:53:00 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:53:00 Installing build dependencies: started
00:53:00 Installing build dependencies: finished with status 'done'
00:53:00 Getting requirements to build wheel: started
00:53:01 Getting requirements to build wheel: finished with status 'done'
00:53:01 Preparing metadata (pyproject.toml): started
00:53:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:01 Building wheels for collected packages: omero-scripts
00:53:01 Building wheel for omero-scripts (pyproject.toml): started
00:53:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:53:01 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=fa0850ccd0cb98cfd568afdd73704356e3ac02609f0c4bda133f158afc2e7fd7
00:53:01 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:53:01 Successfully built omero-scripts
00:53:01 Installing collected packages: omero-scripts
00:53:01 Successfully installed omero-scripts-5.10.1.dev0
00:53:01 + for x in *.tar.gz
00:53:01 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:53:02 Processing ./omero_web-5.31.1.dev0.tar.gz
00:53:02 Installing build dependencies: started
00:53:03 Installing build dependencies: finished with status 'done'
00:53:03 Getting requirements to build wheel: started
00:53:03 Getting requirements to build wheel: finished with status 'done'
00:53:03 Preparing metadata (pyproject.toml): started
00:53:03 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:03 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:53:04 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:53:04 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:53:04 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:53:04 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:53:04 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:53:04 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:53:04 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:53:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:53:04 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:53:04 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:53:04 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:53:04 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:53:04 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:53:04 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:53:04 Collecting pytz (from omero-web==5.31.1.dev0)
00:53:04 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:53:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:53:04 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:53:04 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:53:04 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:53:04 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:53:04 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:53:04 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:53:04 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:53:04 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:53:04 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:53:04 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:53:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:53:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:53:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:53:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:53:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:53:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:53:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:53:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:53:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:53:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.1.4)
00:53:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:53:04 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:53:04 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:53:04 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:53:04 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:53:04 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:53:04 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:53:04 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:53:05 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:53:05 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:53:05 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:53:05 Building wheels for collected packages: omero-web
00:53:05 Building wheel for omero-web (pyproject.toml): started
00:53:06 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:53:06 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=d25c818ab619d23cd5a4265501f3dec28ab60b75936880283eb90645ab3cea9b
00:53:06 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:53:06 Successfully built omero-web
00:53:06 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:53:09
00:53:09 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:53:09 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:09 --2026-02-25 00:53:09-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:09 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.108.133, ...
00:53:09 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:53:09 HTTP request sent, awaiting response... 200 OK
00:53:09 Length: 127242 (124K) [text/plain]
00:53:09 Saving to: ‘Figure_To_Pdf.py’
00:53:09
00:53:09 0K .......... .......... .......... .......... .......... 40% 3.91M 0s
00:53:09 50K .......... .......... .......... .......... .......... 80% 12.8M 0s
00:53:09 100K .......... .......... .... 100% 4.86M=0.02s
00:53:09
00:53:09 2026-02-25 00:53:09 (5.73 MB/s) - ‘Figure_To_Pdf.py’ saved [127242/127242]
00:53:09
00:53:09 + chmod 755 Figure_To_Pdf.py
00:53:09 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:53:09 + omero config set omero.db.name OMERO-server
00:53:11 + omero config set omero.db.host pg
00:53:13 + omero config set omero.db.user postgres
00:53:15 + omero config set omero.data.dir /home/omero/omero-server-data
00:53:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:53:19 + omero config set omero.db.poolsize 25
00:53:21 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:53:23 + omero config set omero.security.trustStorePassword changeit
00:53:25 + omero config set omero.mail.config true
00:53:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:53:29 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:53:31 + omero certificates
00:53:33 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:53:33 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:53:33 + '[' false = true ']'
00:53:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:53:33 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:53:33 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:53:33 2026-02-25 00:53:33,573 [ omego.db] DEBUG dbcommand => upgrade
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG dbhost => localhost
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG dbname => OMERO-server
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG dbpass => omero
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG dbuser => omero
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG rootpass => omero
00:53:33 2026-02-25 00:53:33,574 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:53:33 2026-02-25 00:53:33,574 [omego.extern] INFO Executing : omero version
00:53:35 OMERO.py version:
00:53:35 OMERO.server version:
00:53:35 5.6.3-594-1b0e61632a-ice36-b63
00:53:35 5.22.1.dev0
00:53:35 2026-02-25 00:53:35,617 [omego.extern] INFO Completed [2.043 s]
00:53:35 2026-02-25 00:53:35,617 [omego.extern] DEBUG Using omero CLI from omero
00:53:35 2026-02-25 00:53:35,617 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:53:35 2026-02-25 00:53:35,617 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:35 2026-02-25 00:53:35,617 [omego.extern] INFO Executing : omero config get --show-password
00:53:37 2026-02-25 00:53:37,599 [omego.extern] INFO Completed [1.982 s]
00:53:37 2026-02-25 00:53:37,599 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:37 2026-02-25 00:53:37,600 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:53:37 2026-02-25 00:53:37,953 [omego.extern] INFO Completed [0.354 s]
00:53:37 2026-02-25 00:53:37,953 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:53:37 2026-02-25 00:53:37,953 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:53:37
00:53:37 2026-02-25 00:53:37,954 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:37 2026-02-25 00:53:37,954 [omego.extern] INFO Executing : omero config get --show-password
00:53:39 2026-02-25 00:53:39,930 [omego.extern] INFO Completed [1.977 s]
00:53:39 2026-02-25 00:53:39,930 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:39 2026-02-25 00:53:39,931 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:53:40 2026-02-25 00:53:40,197 [omego.extern] INFO Completed [0.266 s]
00:53:40 2026-02-25 00:53:40,197 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:53:40 2026-02-25 00:53:40,197 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:40 2026-02-25 00:53:40,197 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:40 2026-02-25 00:53:40,197 [omego.extern] INFO Executing : omero config get --show-password
00:53:42 2026-02-25 00:53:42,174 [omego.extern] INFO Completed [1.977 s]
00:53:42 2026-02-25 00:53:42,174 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:42 2026-02-25 00:53:42,174 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:42 2026-02-25 00:53:42,991 [omego.extern] INFO Completed [0.817 s]
00:53:42 2026-02-25 00:53:42,991 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:53:42 2026-02-25 00:53:42,991 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:53:42 2026-02-25 00:53:42,993 [ omego.db] INFO Database is already at OMERO5.4__0
00:53:43 + export LANG=en_US.UTF-8
00:53:43 + LANG=en_US.UTF-8
00:53:43 + export LANGUAGE=en_US:en
00:53:43 + LANGUAGE=en_US:en
00:53:43 + export LC_ALL=en_US.UTF-8
00:53:43 + LC_ALL=en_US.UTF-8
00:53:43 + BUILD_ID=DONT_KILL_ME
00:53:43 + omero admin start
00:53:48 No descriptor given. Using etc/grid/default.xml
00:53:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:53:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:53:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:53:59 Waiting on startup. Use CTRL-C to exit
00:54:00 + omero admin waitup
00:54:02 Waiting on startup. Use CTRL-C to exit
00:54:02 + omero admin diagnostics
00:54:04
00:54:04 ================================================================================
00:54:04 OMERO Diagnostics (admin)
00:54:04 ================================================================================
00:54:04
00:54:04 Commands: java -version 17.0.17 (/usr/bin/java)
00:54:04 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:54:04 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:54:04 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:54:04 Commands: psql --version 16.11 (/usr/bin/psql)
00:54:04 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:54:04
00:54:04 Component: OMERO.py 5.22.1.dev0
00:54:04 Component: OMERO.server 5.6.3-594-1b0e61632a-ice36-b63
00:54:04
00:54:04 Server: icegridnode running
00:54:04 Server: Blitz-0 active (pid = 3345, enabled)
00:54:04 Server: Indexer-0 active (pid = 3373, enabled)
00:54:04 Server: OMERO.Glacier2 active (pid = 3379, enabled)
00:54:04 Server: OMERO.IceStorm active (pid = 3413, enabled)
00:54:04 Server: Processor-0 activating (enabled)
00:54:04 Server: Tables-0 activating (enabled)
00:54:04
00:54:04 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:54:04 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
00:54:04 Log files: DropBox.log n/a
00:54:04 Log files: FileServer.log n/a
00:54:04 Log files: Indexer-0.log 2.6 KB
00:54:04 Log files: MonitorServer.log n/a
00:54:04 Log files: Processor-0.log 592 B
00:54:04 Log files: Tables-0.log 841 B
00:54:04 Log files: TestDropBox.log n/a
00:54:04 Log files: master.err empty
00:54:04 Log files: master.out 30.1 KB
00:54:04 Log files: Total size 0.06 MB
00:54:04
00:54:04
00:54:04 Environment:OMERO_HOME=(unset)
00:54:04 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:54:04 Environment:OMERO_NODE=(unset)
00:54:04 Environment:OMERO_MASTER=(unset)
00:54:04 Environment:OMERO_USERDIR=(unset)
00:54:04 Environment:OMERO_TMPDIR=(unset)
00:54:04 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:04 Environment:PYTHONPATH=(unset)
00:54:04 Environment:ICE_HOME=/opt/ice-3.6.5
00:54:04 Environment:LD_LIBRARY_PATH=(unset)
00:54:04 Environment:DYLD_LIBRARY_PATH=(unset)
00:54:04
00:54:04 OMERO SSL port:4064
00:54:04 OMERO TCP port:4063
00:54:04 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:54:04 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:54:04
00:54:04 JVM settings: Blitz-${index} -Xmx7200m
00:54:04 JVM settings: Indexer-${index} -Xmx4800m
00:54:04 JVM settings: PixelData-${index} -Xmx7200m
00:54:04 JVM settings: Repository-${index} -Xmx4800m
00:54:04
00:54:04 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 25 February 2026 22b4567c955fbb7651f9081d5e2a845cf6993a9f
00:54:04 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 25 February 2026 22b4567c955fbb7651f9081d5e2a845cf6993a9f
00:54:04 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 25 February 2026 22b4567c955fbb7651f9081d5e2a845cf6993a9f
00:54:04 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 25 February 2026 8d6a871cbf8f0ce042155eda3944b62e41c29b11
00:54:04 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:54:04 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:54:04 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 1de4775b0c932c42116ec41e664554cb234dda9e
00:54:05 + deactivate
00:54:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:54:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:05 + export PATH
00:54:05 + unset _OLD_VIRTUAL_PATH
00:54:05 + '[' -n '' ']'
00:54:05 + hash -r
00:54:05 + '[' -n '' ']'
00:54:05 + unset VIRTUAL_ENV
00:54:05 + unset VIRTUAL_ENV_PROMPT
00:54:05 + '[' '!' '' = nondestructive ']'
00:54:05 + unset -f deactivate
00:54:05 Finished: SUCCESS
