00:45:13 Started by upstream project "Trigger" build number 88
00:45:13 originally caused by:
00:45:13 Started by timer
00:45:13 Running as SYSTEM
00:45:13 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:13 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11235084114788961000.sh
00:45:13 + source /home/settings.env
00:45:13 ++ OMERO_DB_HOST=pg
00:45:13 ++ OMERO_DB_USER=postgres
00:45:13 ++ OMERO_DB_PASS=
00:45:13 ++ OMERO_ROOT_PASS=omero
00:45:13 ++ OMERO_DATA_DIR=/OMERO
00:45:13 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:13 + OMERO_DB_NAME=OMERO-server
00:45:13 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:13 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:13 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:13 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:13 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:13 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:13 ++ deactivate nondestructive
00:45:13 ++ '[' -n '' ']'
00:45:13 ++ '[' -n '' ']'
00:45:13 ++ hash -r
00:45:13 ++ '[' -n '' ']'
00:45:13 ++ unset VIRTUAL_ENV
00:45:13 ++ unset VIRTUAL_ENV_PROMPT
00:45:13 ++ '[' '!' nondestructive = nondestructive ']'
00:45:13 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:13 ++ export VIRTUAL_ENV
00:45:13 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:13 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:13 ++ export PATH
00:45:13 ++ '[' -n '' ']'
00:45:13 ++ '[' -z '' ']'
00:45:13 ++ _OLD_VIRTUAL_PS1=
00:45:13 ++ PS1='(.venv3) '
00:45:13 ++ export PS1
00:45:13 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:13 ++ export VIRTUAL_ENV_PROMPT
00:45:13 ++ hash -r
00:45:13 + omero admin stop
00:45:15 Waiting on shutdown. Use CTRL-C to exit
00:45:15 .+ sleep 5
00:45:30 + deactivate
00:45:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:30 + export PATH
00:45:30 + unset _OLD_VIRTUAL_PATH
00:45:30 + '[' -n '' ']'
00:45:30 + hash -r
00:45:30 + '[' -n '' ']'
00:45:30 + unset VIRTUAL_ENV
00:45:30 + unset VIRTUAL_ENV_PROMPT
00:45:30 + '[' '!' '' = nondestructive ']'
00:45:30 + unset -f deactivate
00:45:30 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:31 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:35 + '[' false = true ']'
00:45:35 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:35 Skipping PURGE_DATA:CleanDbAndRepo
00:45:35 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:36 Copied 1 artifact from "OMERO-build" build number 64
00:45:37 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 60
00:45:38 Copied 2 artifacts from "OMERO-build-build" build number 64
00:45:38 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 58
00:45:38 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4644919889071679744.sh
00:45:38 + source /home/settings.env
00:45:38 ++ OMERO_DB_HOST=pg
00:45:38 ++ OMERO_DB_USER=postgres
00:45:38 ++ OMERO_DB_PASS=
00:45:38 ++ OMERO_ROOT_PASS=omero
00:45:38 ++ OMERO_DATA_DIR=/OMERO
00:45:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:38 + OMERO_DB_NAME=OMERO-server
00:45:38 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:38 + mkdir -p /home/omero/omero-server-data
00:45:38 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:38 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:38 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:38 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:38 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:38 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:38 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:38 ++ ls OMERO.server-5.6.3-594-f965e6671d-ice36-b64.zip
00:45:38 + ZIP=OMERO.server-5.6.3-594-f965e6671d-ice36-b64.zip
00:45:38 + '[' '!' -z '' ']'
00:45:38 + DIST=OMERO.server-5.6.3-594-f965e6671d-ice36-b64
00:45:38 + unzip OMERO.server-5.6.3-594-f965e6671d-ice36-b64.zip
00:45:38 Archive: OMERO.server-5.6.3-594-f965e6671d-ice36-b64.zip
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/blitz/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/grid/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/profiles/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/error/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/grid/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/janelia/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/matplotlib/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/ncsa_paledit/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/seaborn/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/luts/wcif/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/analysis_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/annotation_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/export_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/figure_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/import_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/scripts/omero/util_scripts/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/server/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/share/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/share/licenses/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/misc/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__1/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__10/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__11/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__2/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__3/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__4/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__5/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__6/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__7/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__8/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3A__9/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3__4/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3__5/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3__6/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO3__7/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4.1__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4.2__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4.2__0/t/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4.3__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4.4__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO4__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.0__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.1__1/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.2__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__1/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__2/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__3/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/var/
00:45:38 creating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/var/tmp/
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/LICENSE.txt
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/backup.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/blitz/mail-senders.example
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/blitz/mail-server.example
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/build.properties
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/env.bat
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/env.sh
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/hibernate.properties
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/ice.config
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/logback-cli.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/logback-indexing-cli.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/logback-indexing.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/logback.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/mime.types
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/node1.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/node2.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/omero.properties
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/profiles/psql
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/rollover.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/Windows.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/error/maintainance.html
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/grid/README
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/grid/default.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/grid/templates.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/grid/windefault.xml
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/ice.config
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/internal.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/master.cfg
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/templates/robot.template
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/etc/testdropbox.config
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/history.rst
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/OMEZarrReader.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/accessors-smart.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/activation.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aggdesigner-algorithm.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aircompressor.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/antlr.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aopalliance.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/apiguardian-api.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/asm.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/avatica-core.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/avatica-metrics.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aws-java-sdk-core.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aws-java-sdk-kms.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/aws-java-sdk-s3.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/base.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-anim.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-awt-util.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-bridge.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-codec.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-constants.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-css.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-dom.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-ext.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-gvt.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-i18n.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-parser.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-script.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-shared-resources.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-svg-dom.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-svggen.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-transcoder.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-util.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/batik-xml.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/btm.jar
00:45:38 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/lib/client/calcite-core.jar
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00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/psql-header.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/schema.sql
00:45:40 inflating: OMERO.server-5.6.3-594-f965e6671d-ice36-b64/sql/psql/OMERO5.4__0/views.sql
00:45:40 + rm -f OMERO.server-5.6.3-594-f965e6671d-ice36-b64.zip
00:45:40 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-f965e6671d-ice36-b64 /home/omero/workspace/OMERO-server/OMERO.server
00:45:40 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:40 + awsSdkVersion=2.34.6
00:45:40 + jacksonVersion=2.20.0
00:45:40 + logbackVersion=1.3.14
00:45:40 + zarrJavaVersion=0.0.10
00:45:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:40 --2026-02-26 00:45:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:40 HTTP request sent, awaiting response... 200 OK
00:45:40 Length: 4083366 (3.9M) [application/java-archive]
00:45:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:40
00:45:40 0K .......... .......... .......... .......... .......... 1% 19.4M 0s
00:45:40 50K .......... .......... .......... .......... .......... 2% 3.72M 1s
00:45:40 100K .......... .......... .......... .......... .......... 3% 4.14M 1s
00:45:40 150K .......... .......... .......... .......... .......... 5% 15.8M 1s
00:45:40 200K .......... .......... .......... .......... .......... 6% 17.0M 0s
00:45:40 250K .......... .......... .......... .......... .......... 7% 17.1M 0s
00:45:40 300K .......... .......... .......... .......... .......... 8% 10.4M 0s
00:45:40 350K .......... .......... .......... .......... .......... 10% 18.3M 0s
00:45:40 400K .......... .......... .......... .......... .......... 11% 17.7M 0s
00:45:40 450K .......... .......... .......... .......... .......... 12% 25.2M 0s
00:45:40 500K .......... .......... .......... .......... .......... 13% 20.5M 0s
00:45:40 550K .......... .......... .......... .......... .......... 15% 10.2M 0s
00:45:40 600K .......... .......... .......... .......... .......... 16% 14.2M 0s
00:45:40 650K .......... .......... .......... .......... .......... 17% 46.3M 0s
00:45:40 700K .......... .......... .......... .......... .......... 18% 26.3M 0s
00:45:40 750K .......... .......... .......... .......... .......... 20% 20.3M 0s
00:45:40 800K .......... .......... .......... .......... .......... 21% 7.73M 0s
00:45:40 850K .......... .......... .......... .......... .......... 22% 172M 0s
00:45:40 900K .......... .......... .......... .......... .......... 23% 18.1M 0s
00:45:40 950K .......... .......... .......... .......... .......... 25% 16.4M 0s
00:45:40 1000K .......... .......... .......... .......... .......... 26% 36.6M 0s
00:45:40 1050K .......... .......... .......... .......... .......... 27% 7.97M 0s
00:45:40 1100K .......... .......... .......... .......... .......... 28% 100M 0s
00:45:40 1150K .......... .......... .......... .......... .......... 30% 16.9M 0s
00:45:40 1200K .......... .......... .......... .......... .......... 31% 16.4M 0s
00:45:40 1250K .......... .......... .......... .......... .......... 32% 106M 0s
00:45:40 1300K .......... .......... .......... .......... .......... 33% 9.01M 0s
00:45:40 1350K .......... .......... .......... .......... .......... 35% 25.8M 0s
00:45:40 1400K .......... .......... .......... .......... .......... 36% 15.8M 0s
00:45:40 1450K .......... .......... .......... .......... .......... 37% 17.6M 0s
00:45:40 1500K .......... .......... .......... .......... .......... 38% 48.2M 0s
00:45:40 1550K .......... .......... .......... .......... .......... 40% 10.2M 0s
00:45:40 1600K .......... .......... .......... .......... .......... 41% 21.8M 0s
00:45:40 1650K .......... .......... .......... .......... .......... 42% 16.9M 0s
00:45:40 1700K .......... .......... .......... .......... .......... 43% 17.2M 0s
00:45:40 1750K .......... .......... .......... .......... .......... 45% 15.2M 0s
00:45:40 1800K .......... .......... .......... .......... .......... 46% 20.0M 0s
00:45:40 1850K .......... .......... .......... .......... .......... 47% 15.9M 0s
00:45:40 1900K .......... .......... .......... .......... .......... 48% 18.6M 0s
00:45:40 1950K .......... .......... .......... .......... .......... 50% 16.7M 0s
00:45:40 2000K .......... .......... .......... .......... .......... 51% 18.1M 0s
00:45:40 2050K .......... .......... .......... .......... .......... 52% 21.3M 0s
00:45:40 2100K .......... .......... .......... .......... .......... 53% 16.1M 0s
00:45:40 2150K .......... .......... .......... .......... .......... 55% 13.8M 0s
00:45:40 2200K .......... .......... .......... .......... .......... 56% 20.5M 0s
00:45:40 2250K .......... .......... .......... .......... .......... 57% 17.7M 0s
00:45:40 2300K .......... .......... .......... .......... .......... 58% 24.8M 0s
00:45:40 2350K .......... .......... .......... .......... .......... 60% 15.0M 0s
00:45:40 2400K .......... .......... .......... .......... .......... 61% 17.1M 0s
00:45:40 2450K .......... .......... .......... .......... .......... 62% 17.5M 0s
00:45:40 2500K .......... .......... .......... .......... .......... 63% 19.4M 0s
00:45:40 2550K .......... .......... .......... .......... .......... 65% 17.1M 0s
00:45:40 2600K .......... .......... .......... .......... .......... 66% 19.1M 0s
00:45:40 2650K .......... .......... .......... .......... .......... 67% 17.1M 0s
00:45:40 2700K .......... .......... .......... .......... .......... 68% 17.6M 0s
00:45:41 2750K .......... .......... .......... .......... .......... 70% 18.3M 0s
00:45:41 2800K .......... .......... .......... .......... .......... 71% 17.9M 0s
00:45:41 2850K .......... .......... .......... .......... .......... 72% 18.9M 0s
00:45:41 2900K .......... .......... .......... .......... .......... 73% 17.0M 0s
00:45:41 2950K .......... .......... .......... .......... .......... 75% 17.4M 0s
00:45:41 3000K .......... .......... .......... .......... .......... 76% 16.8M 0s
00:45:41 3050K .......... .......... .......... .......... .......... 77% 14.4M 0s
00:45:41 3100K .......... .......... .......... .......... .......... 78% 30.8M 0s
00:45:41 3150K .......... .......... .......... .......... .......... 80% 22.2M 0s
00:45:41 3200K .......... .......... .......... .......... .......... 81% 14.0M 0s
00:45:41 3250K .......... .......... .......... .......... .......... 82% 16.2M 0s
00:45:41 3300K .......... .......... .......... .......... .......... 84% 14.5M 0s
00:45:41 3350K .......... .......... .......... .......... .......... 85% 22.3M 0s
00:45:41 3400K .......... .......... .......... .......... .......... 86% 25.2M 0s
00:45:41 3450K .......... .......... .......... .......... .......... 87% 14.1M 0s
00:45:41 3500K .......... .......... .......... .......... .......... 89% 18.4M 0s
00:45:41 3550K .......... .......... .......... .......... .......... 90% 13.3M 0s
00:45:41 3600K .......... .......... .......... .......... .......... 91% 26.4M 0s
00:45:41 3650K .......... .......... .......... .......... .......... 92% 25.2M 0s
00:45:41 3700K .......... .......... .......... .......... .......... 94% 13.6M 0s
00:45:41 3750K .......... .......... .......... .......... .......... 95% 18.3M 0s
00:45:41 3800K .......... .......... .......... .......... .......... 96% 13.8M 0s
00:45:41 3850K .......... .......... .......... .......... .......... 97% 24.5M 0s
00:45:41 3900K .......... .......... .......... .......... .......... 99% 26.2M 0s
00:45:41 3950K .......... .......... .......... ....... 100% 14.4M=0.2s
00:45:41
00:45:41 2026-02-26 00:45:41 (16.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:41
00:45:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:41 --2026-02-26 00:45:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:41 HTTP request sent, awaiting response... 200 OK
00:45:41 Length: 234962 (229K) [application/java-archive]
00:45:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:41
00:45:41 0K .......... .......... .......... .......... .......... 21% 16.4M 0s
00:45:41 50K .......... .......... .......... .......... .......... 43% 3.88M 0s
00:45:41 100K .......... .......... .......... .......... .......... 65% 16.5M 0s
00:45:41 150K .......... .......... .......... .......... .......... 87% 4.48M 0s
00:45:41 200K .......... .......... ......... 100% 14.9M=0.03s
00:45:41
00:45:41 2026-02-26 00:45:41 (7.14 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:41
00:45:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:41 --2026-02-26 00:45:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:41 HTTP request sent, awaiting response... 200 OK
00:45:41 Length: 192161 (188K) [application/java-archive]
00:45:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:41
00:45:41 0K .......... .......... .......... .......... .......... 26% 3.49M 0s
00:45:41 50K .......... .......... .......... .......... .......... 53% 8.48M 0s
00:45:41 100K .......... .......... .......... .......... .......... 79% 4.94M 0s
00:45:41 150K .......... .......... .......... ....... 100% 10.0M=0.03s
00:45:41
00:45:41 2026-02-26 00:45:41 (5.50 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:41
00:45:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:41 --2026-02-26 00:45:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:41 HTTP request sent, awaiting response... 200 OK
00:45:41 Length: 1037104 (1013K) [application/java-archive]
00:45:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:41
00:45:41 0K .......... .......... .......... .......... .......... 4% 17.1M 0s
00:45:41 50K .......... .......... .......... .......... .......... 9% 3.81M 0s
00:45:41 100K .......... .......... .......... .......... .......... 14% 18.3M 0s
00:45:41 150K .......... .......... .......... .......... .......... 19% 4.46M 0s
00:45:41 200K .......... .......... .......... .......... .......... 24% 17.0M 0s
00:45:41 250K .......... .......... .......... .......... .......... 29% 13.0M 0s
00:45:41 300K .......... .......... .......... .......... .......... 34% 17.4M 0s
00:45:41 350K .......... .......... .......... .......... .......... 39% 16.3M 0s
00:45:41 400K .......... .......... .......... .......... .......... 44% 24.0M 0s
00:45:41 450K .......... .......... .......... .......... .......... 49% 16.7M 0s
00:45:42 500K .......... .......... .......... .......... .......... 54% 22.4M 0s
00:45:42 550K .......... .......... .......... .......... .......... 59% 14.0M 0s
00:45:42 600K .......... .......... .......... .......... .......... 64% 4.55M 0s
00:45:42 650K .......... .......... .......... .......... .......... 69% 5.81M 0s
00:45:42 700K .......... .......... .......... .......... .......... 74% 2.05M 0s
00:45:42 750K .......... .......... .......... .......... .......... 78% 7.25M 0s
00:45:42 800K .......... .......... .......... .......... .......... 83% 290M 0s
00:45:42 850K .......... .......... .......... .......... .......... 88% 3.22M 0s
00:45:42 900K .......... .......... .......... .......... .......... 93% 135M 0s
00:45:42 950K .......... .......... .......... .......... .......... 98% 317M 0s
00:45:42 1000K .......... .. 100% 299M=0.1s
00:45:42
00:45:42 2026-02-26 00:45:42 (8.39 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:42
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-26 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:42 HTTP request sent, awaiting response... 200 OK
00:45:42 Length: 33040 (32K) [application/java-archive]
00:45:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:42
00:45:42 0K .......... .......... .......... .. 100% 10.6M=0.003s
00:45:42
00:45:42 2026-02-26 00:45:42 (10.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:42
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-26 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:42 HTTP request sent, awaiting response... 200 OK
00:45:42 Length: 13758 (13K) [application/java-archive]
00:45:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:42
00:45:42 0K .......... ... 100% 50.7M=0s
00:45:42
00:45:42 2026-02-26 00:45:42 (50.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:42
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-26 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:42 HTTP request sent, awaiting response... 200 OK
00:45:42 Length: 962220 (940K) [application/java-archive]
00:45:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:42
00:45:42 0K .......... .......... .......... .......... .......... 5% 18.2M 0s
00:45:42 50K .......... .......... .......... .......... .......... 10% 3.76M 0s
00:45:42 100K .......... .......... .......... .......... .......... 15% 14.4M 0s
00:45:42 150K .......... .......... .......... .......... .......... 21% 5.24M 0s
00:45:42 200K .......... .......... .......... .......... .......... 26% 12.9M 0s
00:45:42 250K .......... .......... .......... .......... .......... 31% 12.9M 0s
00:45:42 300K .......... .......... .......... .......... .......... 37% 17.7M 0s
00:45:42 350K .......... .......... .......... .......... .......... 42% 21.1M 0s
00:45:42 400K .......... .......... .......... .......... .......... 47% 19.8M 0s
00:45:42 450K .......... .......... .......... .......... .......... 53% 15.4M 0s
00:45:42 500K .......... .......... .......... .......... .......... 58% 17.0M 0s
00:45:42 550K .......... .......... .......... .......... .......... 63% 26.0M 0s
00:45:42 600K .......... .......... .......... .......... .......... 69% 15.3M 0s
00:45:42 650K .......... .......... .......... .......... .......... 74% 15.3M 0s
00:45:42 700K .......... .......... .......... .......... .......... 79% 14.9M 0s
00:45:42 750K .......... .......... .......... .......... .......... 85% 13.2M 0s
00:45:42 800K .......... .......... .......... .......... .......... 90% 24.4M 0s
00:45:42 850K .......... .......... .......... .......... .......... 95% 32.7M 0s
00:45:42 900K .......... .......... .......... ......... 100% 21.1M=0.07s
00:45:42
00:45:42 2026-02-26 00:45:42 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:42
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-26 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 30963 (30K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... 100% 21.1M=0.001s
00:45:43
00:45:43 2026-02-26 00:45:43 (21.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-26 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 241618 (236K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... .......... .......... 21% 17.9M 0s
00:45:43 50K .......... .......... .......... .......... .......... 42% 3.77M 0s
00:45:43 100K .......... .......... .......... .......... .......... 63% 17.8M 0s
00:45:43 150K .......... .......... .......... .......... .......... 84% 4.56M 0s
00:45:43 200K .......... .......... .......... ..... 100% 13.2M=0.03s
00:45:43
00:45:43 2026-02-26 00:45:43 (7.25 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-26 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 91685 (90K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... .......... .......... 55% 17.7M 0s
00:45:43 50K .......... .......... .......... ......... 100% 3.22M=0.01s
00:45:43
00:45:43 2026-02-26 00:45:43 (5.93 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-26 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 66309 (65K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:44
00:45:44 0K .......... .......... .......... .......... .......... 77% 17.9M 0s
00:45:44 50K .......... .... 100% 15.6M=0.004s
00:45:44
00:45:44 2026-02-26 00:45:44 (17.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-26 00:45:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 593063 (579K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:44
00:45:44 0K .......... .......... .......... .......... .......... 8% 17.7M 0s
00:45:44 50K .......... .......... .......... .......... .......... 17% 4.07M 0s
00:45:44 100K .......... .......... .......... .......... .......... 25% 13.2M 0s
00:45:44 150K .......... .......... .......... .......... .......... 34% 4.58M 0s
00:45:44 200K .......... .......... .......... .......... .......... 43% 12.9M 0s
00:45:44 250K .......... .......... .......... .......... .......... 51% 17.0M 0s
00:45:44 300K .......... .......... .......... .......... .......... 60% 16.5M 0s
00:45:44 350K .......... .......... .......... .......... .......... 69% 15.0M 0s
00:45:44 400K .......... .......... .......... .......... .......... 77% 19.4M 0s
00:45:44 450K .......... .......... .......... .......... .......... 86% 25.6M 0s
00:45:44 500K .......... .......... .......... .......... .......... 94% 16.0M 0s
00:45:44 550K .......... .......... ......... 100% 15.5M=0.05s
00:45:44
00:45:44 2026-02-26 00:45:44 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-26 00:45:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 1688471 (1.6M) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:44
00:45:44 0K .......... .......... .......... .......... .......... 3% 21.0M 0s
00:45:44 50K .......... .......... .......... .......... .......... 6% 3.87M 0s
00:45:44 100K .......... .......... .......... .......... .......... 9% 13.8M 0s
00:45:44 150K .......... .......... .......... .......... .......... 12% 4.46M 0s
00:45:44 200K .......... .......... .......... .......... .......... 15% 13.4M 0s
00:45:44 250K .......... .......... .......... .......... .......... 18% 17.2M 0s
00:45:44 300K .......... .......... .......... .......... .......... 21% 16.9M 0s
00:45:44 350K .......... .......... .......... .......... .......... 24% 18.5M 0s
00:45:44 400K .......... .......... .......... .......... .......... 27% 23.3M 0s
00:45:44 450K .......... .......... .......... .......... .......... 30% 12.1M 0s
00:45:44 500K .......... .......... .......... .......... .......... 33% 16.9M 0s
00:45:44 550K .......... .......... .......... .......... .......... 36% 24.4M 0s
00:45:44 600K .......... .......... .......... .......... .......... 39% 20.1M 0s
00:45:44 650K .......... .......... .......... .......... .......... 42% 22.2M 0s
00:45:44 700K .......... .......... .......... .......... .......... 45% 9.66M 0s
00:45:44 750K .......... .......... .......... .......... .......... 48% 28.1M 0s
00:45:44 800K .......... .......... .......... .......... .......... 51% 15.9M 0s
00:45:44 850K .......... .......... .......... .......... .......... 54% 30.1M 0s
00:45:44 900K .......... .......... .......... .......... .......... 57% 22.6M 0s
00:45:44 950K .......... .......... .......... .......... .......... 60% 18.6M 0s
00:45:44 1000K .......... .......... .......... .......... .......... 63% 17.1M 0s
00:45:44 1050K .......... .......... .......... .......... .......... 66% 10.2M 0s
00:45:44 1100K .......... .......... .......... .......... .......... 69% 41.6M 0s
00:45:44 1150K .......... .......... .......... .......... .......... 72% 22.3M 0s
00:45:44 1200K .......... .......... .......... .......... .......... 75% 18.6M 0s
00:45:44 1250K .......... .......... .......... .......... .......... 78% 16.9M 0s
00:45:44 1300K .......... .......... .......... .......... .......... 81% 9.50M 0s
00:45:44 1350K .......... .......... .......... .......... .......... 84% 57.3M 0s
00:45:44 1400K .......... .......... .......... .......... .......... 87% 22.5M 0s
00:45:44 1450K .......... .......... .......... .......... .......... 90% 17.2M 0s
00:45:44 1500K .......... .......... .......... .......... .......... 94% 15.9M 0s
00:45:44 1550K .......... .......... .......... .......... .......... 97% 10.5M 0s
00:45:44 1600K .......... .......... .......... .......... ........ 100% 25.3M=0.1s
00:45:44
00:45:44 2026-02-26 00:45:44 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-26 00:45:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 36400 (36K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:44
00:45:44 0K .......... .......... .......... ..... 100% 20.1M=0.002s
00:45:44
00:45:44 2026-02-26 00:45:44 (20.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-26 00:45:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 79195 (77K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:45
00:45:45 0K .......... .......... .......... .......... .......... 64% 16.1M 0s
00:45:45 50K .......... .......... ....... 100% 2.48M=0.01s
00:45:45
00:45:45 2026-02-26 00:45:45 (5.47 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-26 00:45:45-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:45 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:45 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 277829 (271K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:45
00:45:45 0K .......... .......... .......... .......... .......... 18% 19.1M 0s
00:45:45 50K .......... .......... .......... .......... .......... 36% 3.66M 0s
00:45:45 100K .......... .......... .......... .......... .......... 55% 4.36M 0s
00:45:45 150K .......... .......... .......... .......... .......... 73% 15.2M 0s
00:45:45 200K .......... .......... .......... .......... .......... 92% 13.1M 0s
00:45:45 250K .......... .......... . 100% 22.7M=0.03s
00:45:45
00:45:45 2026-02-26 00:45:45 (7.58 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-26 00:45:45-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:45 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:45 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 579673 (566K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:45
00:45:45 0K .......... .......... .......... .......... .......... 8% 19.6M 0s
00:45:45 50K .......... .......... .......... .......... .......... 17% 3.68M 0s
00:45:45 100K .......... .......... .......... .......... .......... 26% 4.31M 0s
00:45:45 150K .......... .......... .......... .......... .......... 35% 16.2M 0s
00:45:45 200K .......... .......... .......... .......... .......... 44% 16.6M 0s
00:45:45 250K .......... .......... .......... .......... .......... 52% 13.0M 0s
00:45:45 300K .......... .......... .......... .......... .......... 61% 17.3M 0s
00:45:45 350K .......... .......... .......... .......... .......... 70% 21.7M 0s
00:45:45 400K .......... .......... .......... .......... .......... 79% 22.4M 0s
00:45:45 450K .......... .......... .......... .......... .......... 88% 13.7M 0s
00:45:45 500K .......... .......... .......... .......... .......... 97% 18.1M 0s
00:45:45 550K .......... ...... 100% 137M=0.05s
00:45:45
00:45:45 2026-02-26 00:45:45 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-26 00:45:45-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:46 HTTP request sent, awaiting response... 200 OK
00:45:46 Length: 175836 (172K) [application/java-archive]
00:45:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:46
00:45:46 0K .......... .......... .......... .......... .......... 29% 18.2M 0s
00:45:46 50K .......... .......... .......... .......... .......... 58% 3.73M 0s
00:45:46 100K .......... .......... .......... .......... .......... 87% 4.23M 0s
00:45:46 150K .......... .......... . 100% 45.8M=0.03s
00:45:46
00:45:46 2026-02-26 00:45:46 (6.03 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:46
00:45:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:46 --2026-02-26 00:45:46-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:46 HTTP request sent, awaiting response... 200 OK
00:45:46 Length: 889211 (868K) [application/java-archive]
00:45:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:46
00:45:46 0K .......... .......... .......... .......... .......... 5% 16.5M 0s
00:45:46 50K .......... .......... .......... .......... .......... 11% 3.70M 0s
00:45:46 100K .......... .......... .......... .......... .......... 17% 16.3M 0s
00:45:46 150K .......... .......... .......... .......... .......... 23% 4.52M 0s
00:45:46 200K .......... .......... .......... .......... .......... 28% 17.0M 0s
00:45:46 250K .......... .......... .......... .......... .......... 34% 10.5M 0s
00:45:46 300K .......... .......... .......... .......... .......... 40% 17.4M 0s
00:45:46 350K .......... .......... .......... .......... .......... 46% 17.2M 0s
00:45:46 400K .......... .......... .......... .......... .......... 51% 25.8M 0s
00:45:46 450K .......... .......... .......... .......... .......... 57% 21.1M 0s
00:45:46 500K .......... .......... .......... .......... .......... 63% 17.0M 0s
00:45:46 550K .......... .......... .......... .......... .......... 69% 12.9M 0s
00:45:46 600K .......... .......... .......... .......... .......... 74% 21.1M 0s
00:45:46 650K .......... .......... .......... .......... .......... 80% 14.7M 0s
00:45:46 700K .......... .......... .......... .......... .......... 86% 35.7M 0s
00:45:46 750K .......... .......... .......... .......... .......... 92% 16.6M 0s
00:45:46 800K .......... .......... .......... .......... .......... 97% 13.2M 0s
00:45:46 850K .......... ........ 100% 88.6M=0.07s
00:45:46
00:45:46 2026-02-26 00:45:46 (12.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:46
00:45:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:46 --2026-02-26 00:45:46-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:46 HTTP request sent, awaiting response... 200 OK
00:45:46 Length: 736051 (719K) [application/java-archive]
00:45:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:46
00:45:46 0K .......... .......... .......... .......... .......... 6% 3.48M 0s
00:45:46 50K .......... .......... .......... .......... .......... 13% 7.33M 0s
00:45:46 100K .......... .......... .......... .......... .......... 20% 5.06M 0s
00:45:46 150K .......... .......... .......... .......... .......... 27% 10.9M 0s
00:45:46 200K .......... .......... .......... .......... .......... 34% 9.02M 0s
00:45:46 250K .......... .......... .......... .......... .......... 41% 15.5M 0s
00:45:46 300K .......... .......... .......... .......... .......... 48% 17.0M 0s
00:45:46 350K .......... .......... .......... .......... .......... 55% 20.3M 0s
00:45:46 400K .......... .......... .......... .......... .......... 62% 17.5M 0s
00:45:46 450K .......... .......... .......... .......... .......... 69% 17.6M 0s
00:45:46 500K .......... .......... .......... .......... .......... 76% 13.2M 0s
00:45:46 550K .......... .......... .......... .......... .......... 83% 66.9M 0s
00:45:46 600K .......... .......... .......... .......... .......... 90% 13.1M 0s
00:45:46 650K .......... .......... .......... .......... .......... 97% 13.5M 0s
00:45:46 700K .......... ........ 100% 141M=0.07s
00:45:46
00:45:46 2026-02-26 00:45:46 (10.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:46
00:45:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:46 --2026-02-26 00:45:46-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:47 HTTP request sent, awaiting response... 200 OK
00:45:47 Length: 331034 (323K) [application/java-archive]
00:45:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:47
00:45:47 0K .......... .......... .......... .......... .......... 15% 16.7M 0s
00:45:47 50K .......... .......... .......... .......... .......... 30% 4.01M 0s
00:45:47 100K .......... .......... .......... .......... .......... 46% 14.1M 0s
00:45:47 150K .......... .......... .......... .......... .......... 61% 4.83M 0s
00:45:47 200K .......... .......... .......... .......... .......... 77% 12.8M 0s
00:45:47 250K .......... .......... .......... .......... .......... 92% 18.1M 0s
00:45:47 300K .......... .......... ... 100% 23.2M=0.04s
00:45:47
00:45:47 2026-02-26 00:45:47 (8.73 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:47
00:45:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:47 --2026-02-26 00:45:47-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:47 HTTP request sent, awaiting response... 200 OK
00:45:47 Length: 6749842 (6.4M) [application/java-archive]
00:45:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:47
00:45:47 0K .......... .......... .......... .......... .......... 0% 19.2M 0s
00:45:47 50K .......... .......... .......... .......... .......... 1% 3.99M 1s
00:45:47 100K .......... .......... .......... .......... .......... 2% 13.6M 1s
00:45:47 150K .......... .......... .......... .......... .......... 3% 4.46M 1s
00:45:47 200K .......... .......... .......... .......... .......... 3% 13.1M 1s
00:45:47 250K .......... .......... .......... .......... .......... 4% 17.5M 1s
00:45:47 300K .......... .......... .......... .......... .......... 5% 13.4M 1s
00:45:47 350K .......... .......... .......... .......... .......... 6% 22.6M 1s
00:45:47 400K .......... .......... .......... .......... .......... 6% 18.1M 1s
00:45:47 450K .......... .......... .......... .......... .......... 7% 22.0M 1s
00:45:47 500K .......... .......... .......... .......... .......... 8% 12.7M 1s
00:45:47 550K .......... .......... .......... .......... .......... 9% 18.4M 1s
00:45:47 600K .......... .......... .......... .......... .......... 9% 12.8M 1s
00:45:47 650K .......... .......... .......... .......... .......... 10% 46.1M 0s
00:45:47 700K .......... .......... .......... .......... .......... 11% 19.7M 0s
00:45:47 750K .......... .......... .......... .......... .......... 12% 10.8M 0s
00:45:47 800K .......... .......... .......... .......... .......... 12% 25.7M 0s
00:45:47 850K .......... .......... .......... .......... .......... 13% 23.8M 0s
00:45:47 900K .......... .......... .......... .......... .......... 14% 21.2M 0s
00:45:47 950K .......... .......... .......... .......... .......... 15% 17.9M 0s
00:45:47 1000K .......... .......... .......... .......... .......... 15% 11.0M 0s
00:45:47 1050K .......... .......... .......... .......... .......... 16% 25.3M 0s
00:45:47 1100K .......... .......... .......... .......... .......... 17% 21.4M 0s
00:45:47 1150K .......... .......... .......... .......... .......... 18% 22.2M 0s
00:45:47 1200K .......... .......... .......... .......... .......... 18% 18.1M 0s
00:45:47 1250K .......... .......... .......... .......... .......... 19% 9.57M 0s
00:45:47 1300K .......... .......... .......... .......... .......... 20% 38.4M 0s
00:45:47 1350K .......... .......... .......... .......... .......... 21% 16.6M 0s
00:45:47 1400K .......... .......... .......... .......... .......... 21% 17.2M 0s
00:45:47 1450K .......... .......... .......... .......... .......... 22% 19.3M 0s
00:45:47 1500K .......... .......... .......... .......... .......... 23% 16.2M 0s
00:45:47 1550K .......... .......... .......... .......... .......... 24% 18.1M 0s
00:45:47 1600K .......... .......... .......... .......... .......... 25% 25.7M 0s
00:45:47 1650K .......... .......... .......... .......... .......... 25% 12.2M 0s
00:45:47 1700K .......... .......... .......... .......... .......... 26% 25.4M 0s
00:45:47 1750K .......... .......... .......... .......... .......... 27% 14.4M 0s
00:45:47 1800K .......... .......... .......... .......... .......... 28% 15.5M 0s
00:45:47 1850K .......... .......... .......... .......... .......... 28% 25.8M 0s
00:45:47 1900K .......... .......... .......... .......... .......... 29% 18.9M 0s
00:45:47 1950K .......... .......... .......... .......... .......... 30% 17.5M 0s
00:45:47 2000K .......... .......... .......... .......... .......... 31% 15.6M 0s
00:45:47 2050K .......... .......... .......... .......... .......... 31% 15.5M 0s
00:45:47 2100K .......... .......... .......... .......... .......... 32% 24.4M 0s
00:45:47 2150K .......... .......... .......... .......... .......... 33% 17.1M 0s
00:45:47 2200K .......... .......... .......... .......... .......... 34% 17.2M 0s
00:45:47 2250K .......... .......... .......... .......... .......... 34% 17.8M 0s
00:45:47 2300K .......... .......... .......... .......... .......... 35% 16.1M 0s
00:45:47 2350K .......... .......... .......... .......... .......... 36% 30.7M 0s
00:45:47 2400K .......... .......... .......... .......... .......... 37% 17.4M 0s
00:45:47 2450K .......... .......... .......... .......... .......... 37% 13.1M 0s
00:45:47 2500K .......... .......... .......... .......... .......... 38% 19.3M 0s
00:45:47 2550K .......... .......... .......... .......... .......... 39% 16.2M 0s
00:45:47 2600K .......... .......... .......... .......... .......... 40% 21.4M 0s
00:45:47 2650K .......... .......... .......... .......... .......... 40% 20.6M 0s
00:45:47 2700K .......... .......... .......... .......... .......... 41% 17.9M 0s
00:45:47 2750K .......... .......... .......... .......... .......... 42% 14.3M 0s
00:45:47 2800K .......... .......... .......... .......... .......... 43% 25.4M 0s
00:45:47 2850K .......... .......... .......... .......... .......... 43% 13.8M 0s
00:45:47 2900K .......... .......... .......... .......... .......... 44% 17.1M 0s
00:45:47 2950K .......... .......... .......... .......... .......... 45% 18.0M 0s
00:45:47 3000K .......... .......... .......... .......... .......... 46% 23.3M 0s
00:45:47 3050K .......... .......... .......... .......... .......... 47% 14.7M 0s
00:45:47 3100K .......... .......... .......... .......... .......... 47% 22.6M 0s
00:45:47 3150K .......... .......... .......... .......... .......... 48% 15.1M 0s
00:45:47 3200K .......... .......... .......... .......... .......... 49% 17.4M 0s
00:45:47 3250K .......... .......... .......... .......... .......... 50% 23.3M 0s
00:45:47 3300K .......... .......... .......... .......... .......... 50% 14.6M 0s
00:45:47 3350K .......... .......... .......... .......... .......... 51% 20.1M 0s
00:45:47 3400K .......... .......... .......... .......... .......... 52% 24.8M 0s
00:45:47 3450K .......... .......... .......... .......... .......... 53% 19.4M 0s
00:45:47 3500K .......... .......... .......... .......... .......... 53% 10.9M 0s
00:45:47 3550K .......... .......... .......... .......... .......... 54% 21.7M 0s
00:45:47 3600K .......... .......... .......... .......... .......... 55% 15.0M 0s
00:45:47 3650K .......... .......... .......... .......... .......... 56% 40.9M 0s
00:45:47 3700K .......... .......... .......... .......... .......... 56% 18.4M 0s
00:45:47 3750K .......... .......... .......... .......... .......... 57% 11.5M 0s
00:45:47 3800K .......... .......... .......... .......... .......... 58% 36.1M 0s
00:45:47 3850K .......... .......... .......... .......... .......... 59% 11.9M 0s
00:45:47 3900K .......... .......... .......... .......... .......... 59% 35.2M 0s
00:45:47 3950K .......... .......... .......... .......... .......... 60% 17.1M 0s
00:45:47 4000K .......... .......... .......... .......... .......... 61% 12.9M 0s
00:45:47 4050K .......... .......... .......... .......... .......... 62% 21.3M 0s
00:45:47 4100K .......... .......... .......... .......... .......... 62% 15.0M 0s
00:45:47 4150K .......... .......... .......... .......... .......... 63% 34.0M 0s
00:45:47 4200K .......... .......... .......... .......... .......... 64% 23.9M 0s
00:45:47 4250K .......... .......... .......... .......... .......... 65% 20.5M 0s
00:45:47 4300K .......... .......... .......... .......... .......... 65% 13.3M 0s
00:45:47 4350K .......... .......... .......... .......... .......... 66% 11.7M 0s
00:45:47 4400K .......... .......... .......... .......... .......... 67% 34.9M 0s
00:45:47 4450K .......... .......... .......... .......... .......... 68% 22.8M 0s
00:45:47 4500K .......... .......... .......... .......... .......... 69% 22.6M 0s
00:45:47 4550K .......... .......... .......... .......... .......... 69% 10.4M 0s
00:45:47 4600K .......... .......... .......... .......... .......... 70% 15.5M 0s
00:45:47 4650K .......... .......... .......... .......... .......... 71% 31.6M 0s
00:45:47 4700K .......... .......... .......... .......... .......... 72% 17.0M 0s
00:45:47 4750K .......... .......... .......... .......... .......... 72% 17.7M 0s
00:45:47 4800K .......... .......... .......... .......... .......... 73% 15.3M 0s
00:45:47 4850K .......... .......... .......... .......... .......... 74% 12.7M 0s
00:45:47 4900K .......... .......... .......... .......... .......... 75% 18.0M 0s
00:45:47 4950K .......... .......... .......... .......... .......... 75% 36.5M 0s
00:45:47 5000K .......... .......... .......... .......... .......... 76% 24.8M 0s
00:45:47 5050K .......... .......... .......... .......... .......... 77% 13.2M 0s
00:45:47 5100K .......... .......... .......... .......... .......... 78% 34.4M 0s
00:45:47 5150K .......... .......... .......... .......... .......... 78% 9.63M 0s
00:45:47 5200K .......... .......... .......... .......... .......... 79% 27.7M 0s
00:45:47 5250K .......... .......... .......... .......... .......... 80% 25.8M 0s
00:45:47 5300K .......... .......... .......... .......... .......... 81% 13.9M 0s
00:45:47 5350K .......... .......... .......... .......... .......... 81% 34.1M 0s
00:45:47 5400K .......... .......... .......... .......... .......... 82% 9.52M 0s
00:45:47 5450K .......... .......... .......... .......... .......... 83% 43.0M 0s
00:45:47 5500K .......... .......... .......... .......... .......... 84% 21.0M 0s
00:45:47 5550K .......... .......... .......... .......... .......... 84% 12.4M 0s
00:45:47 5600K .......... .......... .......... .......... .......... 85% 15.7M 0s
00:45:47 5650K .......... .......... .......... .......... .......... 86% 15.4M 0s
00:45:47 5700K .......... .......... .......... .......... .......... 87% 24.8M 0s
00:45:47 5750K .......... .......... .......... .......... .......... 87% 36.1M 0s
00:45:47 5800K .......... .......... .......... .......... .......... 88% 13.8M 0s
00:45:47 5850K .......... .......... .......... .......... .......... 89% 17.8M 0s
00:45:47 5900K .......... .......... .......... .......... .......... 90% 19.5M 0s
00:45:47 5950K .......... .......... .......... .......... .......... 91% 12.8M 0s
00:45:47 6000K .......... .......... .......... .......... .......... 91% 28.2M 0s
00:45:47 6050K .......... .......... .......... .......... .......... 92% 12.2M 0s
00:45:47 6100K .......... .......... .......... .......... .......... 93% 14.9M 0s
00:45:47 6150K .......... .......... .......... .......... .......... 94% 21.0M 0s
00:45:47 6200K .......... .......... .......... .......... .......... 94% 35.6M 0s
00:45:47 6250K .......... .......... .......... .......... .......... 95% 25.0M 0s
00:45:47 6300K .......... .......... .......... .......... .......... 96% 17.8M 0s
00:45:47 6350K .......... .......... .......... .......... .......... 97% 12.7M 0s
00:45:47 6400K .......... .......... .......... .......... .......... 97% 13.1M 0s
00:45:47 6450K .......... .......... .......... .......... .......... 98% 22.5M 0s
00:45:47 6500K .......... .......... .......... .......... .......... 99% 22.9M 0s
00:45:47 6550K .......... .......... .......... .......... . 100% 25.1M=0.4s
00:45:47
00:45:47 2026-02-26 00:45:47 (17.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:47
00:45:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:47 --2026-02-26 00:45:47-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:48 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:48 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:48 HTTP request sent, awaiting response... 200 OK
00:45:48 Length: 1732435 (1.7M) [application/java-archive]
00:45:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:48
00:45:48 0K .......... .......... .......... .......... .......... 2% 17.4M 0s
00:45:48 50K .......... .......... .......... .......... .......... 5% 3.83M 0s
00:45:48 100K .......... .......... .......... .......... .......... 8% 17.8M 0s
00:45:48 150K .......... .......... .......... .......... .......... 11% 4.53M 0s
00:45:48 200K .......... .......... .......... .......... .......... 14% 17.2M 0s
00:45:48 250K .......... .......... .......... .......... .......... 17% 13.1M 0s
00:45:48 300K .......... .......... .......... .......... .......... 20% 17.3M 0s
00:45:48 350K .......... .......... .......... .......... .......... 23% 18.4M 0s
00:45:48 400K .......... .......... .......... .......... .......... 26% 25.3M 0s
00:45:48 450K .......... .......... .......... .......... .......... 29% 11.4M 0s
00:45:48 500K .......... .......... .......... .......... .......... 32% 27.4M 0s
00:45:48 550K .......... .......... .......... .......... .......... 35% 16.6M 0s
00:45:48 600K .......... .......... .......... .......... .......... 38% 14.1M 0s
00:45:48 650K .......... .......... .......... .......... .......... 41% 25.4M 0s
00:45:48 700K .......... .......... .......... .......... .......... 44% 14.7M 0s
00:45:48 750K .......... .......... .......... .......... .......... 47% 24.7M 0s
00:45:48 800K .......... .......... .......... .......... .......... 50% 17.1M 0s
00:45:48 850K .......... .......... .......... .......... .......... 53% 12.5M 0s
00:45:48 900K .......... .......... .......... .......... .......... 56% 33.1M 0s
00:45:48 950K .......... .......... .......... .......... .......... 59% 27.3M 0s
00:45:48 1000K .......... .......... .......... .......... .......... 62% 13.4M 0s
00:45:48 1050K .......... .......... .......... .......... .......... 65% 16.7M 0s
00:45:48 1100K .......... .......... .......... .......... .......... 67% 13.1M 0s
00:45:48 1150K .......... .......... .......... .......... .......... 70% 32.7M 0s
00:45:48 1200K .......... .......... .......... .......... .......... 73% 27.5M 0s
00:45:48 1250K .......... .......... .......... .......... .......... 76% 11.6M 0s
00:45:48 1300K .......... .......... .......... .......... .......... 79% 20.8M 0s
00:45:48 1350K .......... .......... .......... .......... .......... 82% 33.9M 0s
00:45:48 1400K .......... .......... .......... .......... .......... 85% 19.8M 0s
00:45:48 1450K .......... .......... .......... .......... .......... 88% 16.4M 0s
00:45:48 1500K .......... .......... .......... .......... .......... 91% 10.3M 0s
00:45:48 1550K .......... .......... .......... .......... .......... 94% 17.4M 0s
00:45:48 1600K .......... .......... .......... .......... .......... 97% 24.3M 0s
00:45:48 1650K .......... .......... .......... .......... . 100% 23.0M=0.1s
00:45:48
00:45:48 2026-02-26 00:45:48 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:48
00:45:48 + for x in *.jar
00:45:48 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:48 ++ deactivate nondestructive
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ hash -r
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ unset VIRTUAL_ENV
00:45:48 ++ unset VIRTUAL_ENV_PROMPT
00:45:48 ++ '[' '!' nondestructive = nondestructive ']'
00:45:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:48 ++ export VIRTUAL_ENV
00:45:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:48 ++ export PATH
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ '[' -z '' ']'
00:45:48 ++ _OLD_VIRTUAL_PS1=
00:45:48 ++ PS1='(.venv3) '
00:45:48 ++ export PS1
00:45:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:48 ++ export VIRTUAL_ENV_PROMPT
00:45:48 ++ hash -r
00:45:48 + pip install -U pip
00:45:48 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:48 Collecting pip
00:45:48 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:48 Installing collected packages: pip
00:45:48 Attempting uninstall: pip
00:45:48 Found existing installation: pip 22.3.1
00:45:48 Uninstalling pip-22.3.1:
00:45:48 Successfully uninstalled pip-22.3.1
00:45:49 Successfully installed pip-26.0.1
00:45:49 WARNING: There was an error checking the latest version of pip.
00:45:49 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:50 Collecting zeroc-ice==3.6.5
00:45:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 21.2 MB/s 0:00:01
00:45:52 Installing collected packages: zeroc-ice
00:45:53 Successfully installed zeroc-ice-3.6.5
00:45:53 + pip install markdown
00:45:53 Collecting markdown
00:45:53 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:53 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:53 Installing collected packages: markdown
00:45:53 Successfully installed markdown-3.10.2
00:45:53 + pip install reportlab
00:45:54 Collecting reportlab
00:45:54 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:54 Collecting pillow>=9.0.0 (from reportlab)
00:45:54 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:54 Collecting charset-normalizer (from reportlab)
00:45:54 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:54 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:54 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:54 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:54 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:55
00:45:55 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:55 + pip install omego
00:45:56 Collecting omego
00:45:56 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:45:56 Collecting future (from omego)
00:45:56 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:56 Collecting yaclifw>=0.1.1 (from omego)
00:45:56 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:56 Collecting six (from yaclifw>=0.1.1->omego)
00:45:56 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:56 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:45:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:56 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:56 Installing collected packages: six, future, yaclifw, omego
00:45:56
00:45:56 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:45:56 + pip install tables
00:45:57 Collecting tables
00:45:57 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:45:57 Collecting numpy>=1.20.0 (from tables)
00:45:57 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:57 Collecting numexpr>=2.6.2 (from tables)
00:45:57 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:57 Collecting packaging (from tables)
00:45:57 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:57 Collecting py-cpuinfo (from tables)
00:45:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:57 Collecting blosc2>=2.3.0 (from tables)
00:45:57 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:45:57 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:57 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:57 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:57 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:57 Collecting requests (from blosc2>=2.3.0->tables)
00:45:57 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:57 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:57 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:57 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:57 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:57 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:58 Downloading certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:45:58 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:45:58 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:45:58 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:58 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:58 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:58 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:58 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:58 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:58 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:58 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:58 Downloading certifi-2026.2.25-py3-none-any.whl (153 kB)
00:45:58 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:01
00:46:01 Successfully installed blosc2-4.0.0 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.0 urllib3-2.6.3
00:46:01 + pip install jinja2
00:46:01 Collecting jinja2
00:46:01 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:01 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:01 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:01 Installing collected packages: MarkupSafe, jinja2
00:46:02
00:46:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:02 + pip install omero-py
00:46:02 Collecting omero-py
00:46:02 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:46:02 Collecting appdirs (from omero-py)
00:46:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:46:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:46:02 Collecting PyYAML (from omero-py)
00:46:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:46:02 Collecting portalocker (from omero-py)
00:46:02 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:46:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:02 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:46:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:46:02 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:46:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:02 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:02 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:04
00:46:04 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:46:04 + pip install pyarrow
00:46:04 Collecting pyarrow
00:46:04 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:46:04 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:46:05 Installing collected packages: pyarrow
00:46:06 Successfully installed pyarrow-23.0.1
00:46:06 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:06 Collecting omero-metadata
00:46:06 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-x8xtod5r/omero-metadata_be22c32b4fe6495da9902e6ff77c11e1
00:46:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-x8xtod5r/omero-metadata_be22c32b4fe6495da9902e6ff77c11e1
00:46:07 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit ca2de757ff6451e015f44600ca7904143b4bf540
00:46:07 Installing build dependencies: started
00:46:08 Installing build dependencies: finished with status 'done'
00:46:08 Getting requirements to build wheel: started
00:46:08 Getting requirements to build wheel: finished with status 'done'
00:46:08 Preparing metadata (pyproject.toml): started
00:46:08 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:46:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:08 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:09 Collecting pandas (from omero-metadata)
00:46:09 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:46:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:46:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:09 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:09 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:09 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:46:09 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:46:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:09 Building wheels for collected packages: omero-metadata
00:46:09 Building wheel for omero-metadata (pyproject.toml): started
00:46:09 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:09 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=0ace4248fcd362e00e51c208b75bedc97c81a4133de98b5a16c0726f93e4bd75
00:46:09 Stored in directory: /tmp/pip-ephem-wheel-cache-bn1b8rfl/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:09 Successfully built omero-metadata
00:46:09 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:14
00:46:14 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:46:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:15 Collecting omero-cli-render
00:46:15 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-h0kcmtmj/omero-cli-render_43f22f9c42834f2395d91675199be618
00:46:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-h0kcmtmj/omero-cli-render_43f22f9c42834f2395d91675199be618
00:46:16 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:16 Switched to a new branch 'merge_ci'
00:46:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:16 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit b33e956fc6e0c5de69f022addbd1debaa508c096
00:46:16 Installing build dependencies: started
00:46:17 Installing build dependencies: finished with status 'done'
00:46:17 Getting requirements to build wheel: started
00:46:17 Getting requirements to build wheel: finished with status 'done'
00:46:17 Preparing metadata (pyproject.toml): started
00:46:17 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:17 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:46:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:46:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:46:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:17 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:46:17 Building wheels for collected packages: omero-cli-render
00:46:17 Building wheel for omero-cli-render (pyproject.toml): started
00:46:17 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:17 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=c3b2bb4d721e6e22af0e8aa89ef23255995ca7c0f7aa607c29e8682dc4b4ff10
00:46:17 Stored in directory: /tmp/pip-ephem-wheel-cache-l2of4q7s/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:17 Successfully built omero-cli-render
00:46:17 Installing collected packages: omero-cli-render
00:46:17 Successfully installed omero-cli-render-0.8.2.dev0
00:46:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:18 Collecting omero-cli-duplicate
00:46:18 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-g6advm9r/omero-cli-duplicate_bee61740cd854fa49faf95483e07a703
00:46:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-g6advm9r/omero-cli-duplicate_bee61740cd854fa49faf95483e07a703
00:46:19 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:19 Switched to a new branch 'merge_ci'
00:46:19 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:19 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 03e1ea45f2c61675102a77b9e22cc5c406c5bdd1
00:46:19 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:20 Getting requirements to build wheel: finished with status 'done'
00:46:20 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:46:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:46:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:46:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:46:20 Building wheels for collected packages: omero-cli-duplicate
00:46:20 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:20 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:20 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=1383c819ae98e9ac2017acc9b88b55cfb662523daddf3655a8f9bd0b37db6270
00:46:20 Stored in directory: /tmp/pip-ephem-wheel-cache-ke89uj98/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:20 Successfully built omero-cli-duplicate
00:46:20 Installing collected packages: omero-cli-duplicate
00:46:20 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:21 Collecting omero-cli-zarr
00:46:21 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-fk8mjepo/omero-cli-zarr_4750e7a8b4ff4bcbafaddc39551e14e0
00:46:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-fk8mjepo/omero-cli-zarr_4750e7a8b4ff4bcbafaddc39551e14e0
00:46:22 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:22 Switched to a new branch 'merge_ci'
00:46:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:22 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 650a9cb2aaea213f52ed39fd0c764886a7d25c7c
00:46:22 Installing build dependencies: started
00:46:23 Installing build dependencies: finished with status 'done'
00:46:23 Getting requirements to build wheel: started
00:46:23 Getting requirements to build wheel: finished with status 'done'
00:46:23 Installing backend dependencies: started
00:46:24 Installing backend dependencies: finished with status 'done'
00:46:24 Preparing metadata (pyproject.toml): started
00:46:24 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:46:24 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:46:24 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:46:24 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.2)
00:46:24 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:24 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:46:24 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:24 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:24 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:24 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:46:25 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:46:25 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:25 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:46:25 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:46:25 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:25 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:25 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:46:25 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:25 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:46:25 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:25 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:46:25 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:46:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:25 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:25 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached aiobotocore-3.2.0-py3-none-any.whl.metadata (26 kB)
00:46:25 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:25 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:26 Collecting botocore<1.42.56,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached botocore-1.42.55-py3-none-any.whl.metadata (5.9 kB)
00:46:26 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:46:26 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:26 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:26 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:46:26 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:26 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:26 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:26 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:26 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:26 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:27 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:46:27 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.56,>=1.42.53->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:46:27 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:46:27 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.11)
00:46:27 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:27 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:27 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:46:27 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:46:27 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached tifffile-2026.2.24-py3-none-any.whl.metadata (31 kB)
00:46:27 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:46:27 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:46:27 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:27 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:27 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.4)
00:46:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:46:27 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:46:27 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:46:27 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:27 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:27 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:46:27 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:27 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:27 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:46:27 Using cached aiobotocore-3.2.0-py3-none-any.whl (87 kB)
00:46:27 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:27 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:27 Using cached botocore-1.42.55-py3-none-any.whl (14.6 MB)
00:46:27 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:27 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:27 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:46:27 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:27 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:27 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:27 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:27 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:27 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:27 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:27 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:27 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:27 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:27 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:46:27 Using cached tifffile-2026.2.24-py3-none-any.whl (243 kB)
00:46:27 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:27 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:27 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:27 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:27 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:27 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:27 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:27 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:27 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:46:28 Building wheels for collected packages: omero-cli-zarr
00:46:28 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:28 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:28 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev160+g650a9cb-py3-none-any.whl size=38169 sha256=5adfdd5af9dac3e4097848e330996e321ad7ba903364429c458c0557b20a4fb4
00:46:28 Stored in directory: /tmp/pip-ephem-wheel-cache-i3jt7l0e/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:28 Successfully built omero-cli-zarr
00:46:28 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:38
00:46:38 Successfully installed aiobotocore-3.2.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.55 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev160+g650a9cb partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.2.24 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:38 + pip install omero-certificates
00:46:38 Collecting omero-certificates
00:46:38 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:38 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:46:38 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:39 Installing collected packages: omero-certificates
00:46:39 Successfully installed omero-certificates-0.4.0
00:46:39 + for x in *.tar.gz
00:46:39 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:39 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:39 Installing build dependencies: started
00:46:40 Installing build dependencies: finished with status 'done'
00:46:40 Getting requirements to build wheel: started
00:46:40 Getting requirements to build wheel: finished with status 'done'
00:46:40 Preparing metadata (pyproject.toml): started
00:46:40 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:40 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:40 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:46:40 Building wheels for collected packages: omero-dropbox
00:46:40 Building wheel for omero-dropbox (pyproject.toml): started
00:46:40 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:40 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=ebb45543aca65e0d0ced6a8a33f479a09664266766d4a7eff8dbe4fea8663606
00:46:40 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:40 Successfully built omero-dropbox
00:46:41 Installing collected packages: omero-dropbox
00:46:41 Successfully installed omero-dropbox-5.7.1.dev0
00:46:41 + for x in *.tar.gz
00:46:41 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:41 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:41 Installing build dependencies: started
00:46:42 Installing build dependencies: finished with status 'done'
00:46:42 Getting requirements to build wheel: started
00:46:42 Getting requirements to build wheel: finished with status 'done'
00:46:42 Preparing metadata (pyproject.toml): started
00:46:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:42 Building wheels for collected packages: omero_marshal
00:46:42 Building wheel for omero_marshal (pyproject.toml): started
00:46:43 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:43 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=994e1f3179600706cabbed33c44a04a31fea43ffa8e4d62f77bfeaeb1edb17b2
00:46:43 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:43 Successfully built omero_marshal
00:46:43 Installing collected packages: omero_marshal
00:46:43 Successfully installed omero_marshal-0.9.2.dev0
00:46:43 + for x in *.tar.gz
00:46:43 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:43 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:43 Installing build dependencies: started
00:46:44 Installing build dependencies: finished with status 'done'
00:46:44 Getting requirements to build wheel: started
00:46:45 Getting requirements to build wheel: finished with status 'done'
00:46:45 Preparing metadata (pyproject.toml): started
00:46:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.2.25)
00:46:45 Building wheels for collected packages: omero-py
00:46:45 Building wheel for omero-py (pyproject.toml): started
00:46:46 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:46 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=2b289d3886a9d20f26729d3db0e1b0871056d4a5b20eb1267a46d99f0e7997a5
00:46:46 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:46 Successfully built omero-py
00:46:46 Installing collected packages: omero-py
00:46:46 Attempting uninstall: omero-py
00:46:46 Found existing installation: omero-py 5.22.0
00:46:46 Uninstalling omero-py-5.22.0:
00:46:46 Successfully uninstalled omero-py-5.22.0
00:46:48 Successfully installed omero-py-5.22.1.dev0
00:46:48 + for x in *.tar.gz
00:46:48 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:49 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:49 Installing build dependencies: started
00:46:49 Installing build dependencies: finished with status 'done'
00:46:49 Getting requirements to build wheel: started
00:46:50 Getting requirements to build wheel: finished with status 'done'
00:46:50 Preparing metadata (pyproject.toml): started
00:46:50 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:50 Building wheels for collected packages: omero-scripts
00:46:50 Building wheel for omero-scripts (pyproject.toml): started
00:46:50 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:50 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=b8ef6a49c6a06cfa362350268f91a61299cbdb964a00a96cd635163ae43c1d31
00:46:50 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:50 Successfully built omero-scripts
00:46:50 Installing collected packages: omero-scripts
00:46:50 Successfully installed omero-scripts-5.10.1.dev0
00:46:50 + for x in *.tar.gz
00:46:50 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:51 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:51 Installing build dependencies: started
00:46:52 Installing build dependencies: finished with status 'done'
00:46:52 Getting requirements to build wheel: started
00:46:52 Getting requirements to build wheel: finished with status 'done'
00:46:52 Preparing metadata (pyproject.toml): started
00:46:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:52 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:53 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:46:53 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:53 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:53 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:53 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:53 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:53 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:53 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:53 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:53 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:53 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:53 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:53 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:53 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:53 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:53 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:53 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:53 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:53 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:53 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:53 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:53 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:53 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:53 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:53 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:46:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:53 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:53 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:53 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:46:53 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:53 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:53 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:53 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:53 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:53 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:53 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:53 Building wheels for collected packages: omero-web
00:46:53 Building wheel for omero-web (pyproject.toml): started
00:46:54 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:54 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=7605cced22673723fb5dc86b482f38b9a224ae1701b941e7eefcd8ab3461ffd2
00:46:54 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:54 Successfully built omero-web
00:46:54 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:59
00:46:59 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:46:59 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:59 --2026-02-26 00:46:59-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:59 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ...
00:46:59 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:46:59 HTTP request sent, awaiting response... 200 OK
00:46:59 Length: 127242 (124K) [text/plain]
00:46:59 Saving to: ‘Figure_To_Pdf.py’
00:46:59
00:46:59 0K .......... .......... .......... .......... .......... 40% 4.10M 0s
00:46:59 50K .......... .......... .......... .......... .......... 80% 11.3M 0s
00:46:59 100K .......... .......... .... 100% 4.80M=0.02s
00:46:59
00:46:59 2026-02-26 00:46:59 (5.73 MB/s) - ‘Figure_To_Pdf.py’ saved [127242/127242]
00:46:59
00:46:59 + chmod 755 Figure_To_Pdf.py
00:46:59 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:59 + omero config set omero.db.name OMERO-server
00:47:01 + omero config set omero.db.host pg
00:47:03 + omero config set omero.db.user postgres
00:47:05 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:07 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:09 + omero config set omero.db.poolsize 25
00:47:11 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:13 + omero config set omero.security.trustStorePassword changeit
00:47:15 + omero config set omero.mail.config true
00:47:17 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:19 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:21 + omero certificates
00:47:22 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:22 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:23 + '[' false = true ']'
00:47:23 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:23 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:23 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG dbcommand => upgrade
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG dbhost => localhost
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG dbname => OMERO-server
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG dbpass => omero
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG dbuser => omero
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG rootpass => omero
00:47:23 2026-02-26 00:47:23,309 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:23 2026-02-26 00:47:23,309 [omego.extern] INFO Executing : omero version
00:47:25 OMERO.py version:
00:47:25 OMERO.server version:
00:47:25 5.6.3-594-f965e6671d-ice36-b64
00:47:25 5.22.1.dev0
00:47:25 2026-02-26 00:47:25,280 [omego.extern] INFO Completed [1.971 s]
00:47:25 2026-02-26 00:47:25,281 [omego.extern] DEBUG Using omero CLI from omero
00:47:25 2026-02-26 00:47:25,281 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:25 2026-02-26 00:47:25,281 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:25 2026-02-26 00:47:25,281 [omego.extern] INFO Executing : omero config get --show-password
00:47:27 2026-02-26 00:47:27,283 [omego.extern] INFO Completed [2.002 s]
00:47:27 2026-02-26 00:47:27,283 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:27 2026-02-26 00:47:27,284 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:27 2026-02-26 00:47:27,289 [omego.extern] INFO Completed [0.006 s]
00:47:27 2026-02-26 00:47:27,289 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:27 2026-02-26 00:47:27,290 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:27
00:47:27 2026-02-26 00:47:27,290 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:27 2026-02-26 00:47:27,290 [omego.extern] INFO Executing : omero config get --show-password
00:47:29 2026-02-26 00:47:29,279 [omego.extern] INFO Completed [1.989 s]
00:47:29 2026-02-26 00:47:29,279 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:29 2026-02-26 00:47:29,279 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:29 2026-02-26 00:47:29,288 [omego.extern] INFO Completed [0.009 s]
00:47:29 2026-02-26 00:47:29,288 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:47:29 2026-02-26 00:47:29,288 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:29 2026-02-26 00:47:29,288 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:29 2026-02-26 00:47:29,288 [omego.extern] INFO Executing : omero config get --show-password
00:47:31 2026-02-26 00:47:31,245 [omego.extern] INFO Completed [1.957 s]
00:47:31 2026-02-26 00:47:31,245 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:31 2026-02-26 00:47:31,246 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:31 2026-02-26 00:47:31,255 [omego.extern] INFO Completed [0.010 s]
00:47:31 2026-02-26 00:47:31,255 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:31 2026-02-26 00:47:31,256 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:31 2026-02-26 00:47:31,257 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:31 + export LANG=en_US.UTF-8
00:47:31 + LANG=en_US.UTF-8
00:47:31 + export LANGUAGE=en_US:en
00:47:31 + LANGUAGE=en_US:en
00:47:31 + export LC_ALL=en_US.UTF-8
00:47:31 + LC_ALL=en_US.UTF-8
00:47:31 + BUILD_ID=DONT_KILL_ME
00:47:31 + omero admin start
00:47:36 No descriptor given. Using etc/grid/default.xml
00:47:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:44 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:44 Waiting on startup. Use CTRL-C to exit
00:47:44 + omero admin waitup
00:47:46 Waiting on startup. Use CTRL-C to exit
00:47:46 + omero admin diagnostics
00:47:49
00:47:49 ================================================================================
00:47:49 OMERO Diagnostics (admin)
00:47:49 ================================================================================
00:47:49
00:47:49 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:49 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:49 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:49 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:49 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:49 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:49
00:47:49 Component: OMERO.py 5.22.1.dev0
00:47:49 Component: OMERO.server 5.6.3-594-f965e6671d-ice36-b64
00:47:49
00:47:49 Server: icegridnode running
00:47:49 Server: Blitz-0 active (pid = 17751, enabled)
00:47:49 Server: Indexer-0 activating (enabled)
00:47:49 Server: OMERO.Glacier2 active (pid = 17785, enabled)
00:47:49 Server: OMERO.IceStorm active (pid = 17812, enabled)
00:47:49 Server: Processor-0 active (pid = 17801, enabled)
00:47:49 Server: Tables-0 active (pid = 17813, enabled)
00:47:49
00:47:49 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:49 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:47:49 Log files: DropBox.log n/a
00:47:49 Log files: FileServer.log n/a
00:47:49 Log files: Indexer-0.log 598 B
00:47:49 Log files: MonitorServer.log n/a
00:47:49 Log files: Processor-0.log 735 B
00:47:49 Log files: Tables-0.log 961 B
00:47:49 Log files: TestDropBox.log n/a
00:47:49 Log files: master.err empty
00:47:49 Log files: master.out 30.1 KB
00:47:49 Log files: Total size 0.06 MB
00:47:49
00:47:49
00:47:49 Environment:OMERO_HOME=(unset)
00:47:49 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:49 Environment:OMERO_NODE=(unset)
00:47:49 Environment:OMERO_MASTER=(unset)
00:47:49 Environment:OMERO_USERDIR=(unset)
00:47:49 Environment:OMERO_TMPDIR=(unset)
00:47:49 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:49 Environment:PYTHONPATH=(unset)
00:47:49 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:49 Environment:LD_LIBRARY_PATH=(unset)
00:47:49 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:49
00:47:49 OMERO SSL port:4064
00:47:49 OMERO TCP port:4063
00:47:49 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:49 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:49
00:47:49 JVM settings: Blitz-${index} -Xmx7200m
00:47:49 JVM settings: Indexer-${index} -Xmx4800m
00:47:49 JVM settings: PixelData-${index} -Xmx7200m
00:47:49 JVM settings: Repository-${index} -Xmx4800m
00:47:49
00:47:49 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 26 February 2026 f216902d27d5a5e0e8f76d78351dd8a7767adc9a
00:47:49 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 26 February 2026 f216902d27d5a5e0e8f76d78351dd8a7767adc9a
00:47:49 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 26 February 2026 f216902d27d5a5e0e8f76d78351dd8a7767adc9a
00:47:49 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 26 February 2026 15ecf7edc690df9b39e61d13c9d9524e95da5c56
00:47:49 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:49 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:49 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 9a4269a4453e575a03ba9a0bbda812c19b25568b
00:47:49 + deactivate
00:47:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:49 + export PATH
00:47:49 + unset _OLD_VIRTUAL_PATH
00:47:49 + '[' -n '' ']'
00:47:49 + hash -r
00:47:49 + '[' -n '' ']'
00:47:49 + unset VIRTUAL_ENV
00:47:49 + unset VIRTUAL_ENV_PROMPT
00:47:49 + '[' '!' '' = nondestructive ']'
00:47:49 + unset -f deactivate
00:47:49 Finished: SUCCESS
