00:45:07 Started by upstream project "Trigger" build number 89
00:45:07 originally caused by:
00:45:07 Started by timer
00:45:07 Running as SYSTEM
00:45:07 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:07 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13362071790812000153.sh
00:45:07 + source /home/settings.env
00:45:07 ++ OMERO_DB_HOST=pg
00:45:07 ++ OMERO_DB_USER=postgres
00:45:07 ++ OMERO_DB_PASS=
00:45:07 ++ OMERO_ROOT_PASS=omero
00:45:07 ++ OMERO_DATA_DIR=/OMERO
00:45:07 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:07 + OMERO_DB_NAME=OMERO-server
00:45:07 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:07 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:07 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:07 ++ deactivate nondestructive
00:45:07 ++ '[' -n '' ']'
00:45:07 ++ '[' -n '' ']'
00:45:07 ++ hash -r
00:45:07 ++ '[' -n '' ']'
00:45:07 ++ unset VIRTUAL_ENV
00:45:07 ++ unset VIRTUAL_ENV_PROMPT
00:45:07 ++ '[' '!' nondestructive = nondestructive ']'
00:45:07 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:07 ++ export VIRTUAL_ENV
00:45:07 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:07 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:07 ++ export PATH
00:45:07 ++ '[' -n '' ']'
00:45:07 ++ '[' -z '' ']'
00:45:07 ++ _OLD_VIRTUAL_PS1=
00:45:07 ++ PS1='(.venv3) '
00:45:07 ++ export PS1
00:45:07 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:07 ++ export VIRTUAL_ENV_PROMPT
00:45:07 ++ hash -r
00:45:07 + omero admin stop
00:45:09 Waiting on shutdown. Use CTRL-C to exit
00:45:09 .+ sleep 5
00:45:24 + deactivate
00:45:24 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:24 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:24 + export PATH
00:45:24 + unset _OLD_VIRTUAL_PATH
00:45:24 + '[' -n '' ']'
00:45:24 + hash -r
00:45:24 + '[' -n '' ']'
00:45:24 + unset VIRTUAL_ENV
00:45:24 + unset VIRTUAL_ENV_PROMPT
00:45:24 + '[' '!' '' = nondestructive ']'
00:45:24 + unset -f deactivate
00:45:24 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:25 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:28 + '[' false = true ']'
00:45:28 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:28 Skipping PURGE_DATA:CleanDbAndRepo
00:45:28 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:30 Copied 1 artifact from "OMERO-build" build number 65
00:45:30 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 61
00:45:30 Copied 2 artifacts from "OMERO-build-build" build number 65
00:45:30 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 59
00:45:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17005465216045756261.sh
00:45:30 + source /home/settings.env
00:45:30 ++ OMERO_DB_HOST=pg
00:45:30 ++ OMERO_DB_USER=postgres
00:45:30 ++ OMERO_DB_PASS=
00:45:30 ++ OMERO_ROOT_PASS=omero
00:45:30 ++ OMERO_DATA_DIR=/OMERO
00:45:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:30 + OMERO_DB_NAME=OMERO-server
00:45:30 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:30 + mkdir -p /home/omero/omero-server-data
00:45:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:30 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:30 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:30 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:30 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:30 ++ ls OMERO.server-5.6.3-594-85732176e5-ice36-b65.zip
00:45:30 + ZIP=OMERO.server-5.6.3-594-85732176e5-ice36-b65.zip
00:45:30 + '[' '!' -z '' ']'
00:45:30 + DIST=OMERO.server-5.6.3-594-85732176e5-ice36-b65
00:45:30 + unzip OMERO.server-5.6.3-594-85732176e5-ice36-b65.zip
00:45:30 Archive: OMERO.server-5.6.3-594-85732176e5-ice36-b65.zip
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/blitz/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/grid/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/profiles/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/error/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/grid/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/janelia/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/matplotlib/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/ncsa_paledit/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/seaborn/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/luts/wcif/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/analysis_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/annotation_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/export_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/figure_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/import_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/scripts/omero/util_scripts/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/server/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/share/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/share/licenses/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/misc/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__1/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__10/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__11/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__2/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__3/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__4/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__5/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__6/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__7/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__8/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3A__9/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3__4/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3__5/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3__6/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO3__7/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4.1__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4.2__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4.2__0/t/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4.3__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4.4__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO4__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.0__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.1__1/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.2__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.3__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4DEV__1/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4DEV__2/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4DEV__3/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/var/
00:45:30 creating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/var/tmp/
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/LICENSE.txt
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/backup.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/blitz/mail-senders.example
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/blitz/mail-server.example
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/build.properties
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/env.bat
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/env.sh
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/hibernate.properties
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/ice.config
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/logback-cli.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/logback-indexing-cli.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/logback-indexing.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/logback.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/mime.types
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/node1.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/node2.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/omero.properties
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/profiles/psql
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/rollover.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/Windows.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/error/maintainance.html
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/grid/README
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/grid/default.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/grid/templates.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/grid/windefault.xml
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/ice.config
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/internal.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/master.cfg
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/templates/robot.template
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/etc/testdropbox.config
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/history.rst
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/OMEZarrReader.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/accessors-smart.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/activation.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aggdesigner-algorithm.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aircompressor.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/antlr.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aopalliance.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/apiguardian-api.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/asm.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/avatica-core.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/avatica-metrics.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aws-java-sdk-core.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aws-java-sdk-kms.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/aws-java-sdk-s3.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/base.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-anim.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-awt-util.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-bridge.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-codec.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-constants.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-css.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-dom.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-ext.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-gvt.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-i18n.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-parser.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-script.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-shared-resources.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-svg-dom.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-svggen.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-transcoder.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-util.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/batik-xml.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/btm.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/calcite-core.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/calcite-linq4j.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/cdm-core.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/checker-qual.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/commons-beanutils.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/commons-codec.jar
00:45:30 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/lib/client/commons-collections.jar
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00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/psql-header.sql
00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/schema.sql
00:45:32 inflating: OMERO.server-5.6.3-594-85732176e5-ice36-b65/sql/psql/OMERO5.4__0/views.sql
00:45:32 + rm -f OMERO.server-5.6.3-594-85732176e5-ice36-b65.zip
00:45:32 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-85732176e5-ice36-b65 /home/omero/workspace/OMERO-server/OMERO.server
00:45:32 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:32 + awsSdkVersion=2.34.6
00:45:32 + jacksonVersion=2.20.0
00:45:32 + logbackVersion=1.3.14
00:45:32 + zarrJavaVersion=0.0.10
00:45:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:32 --2026-02-27 00:45:32-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:33 HTTP request sent, awaiting response... 200 OK
00:45:33 Length: 4083366 (3.9M) [application/java-archive]
00:45:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:33
00:45:33 0K .......... .......... .......... .......... .......... 1% 17.6M 0s
00:45:33 50K .......... .......... .......... .......... .......... 2% 3.75M 1s
00:45:33 100K .......... .......... .......... .......... .......... 3% 17.4M 0s
00:45:33 150K .......... .......... .......... .......... .......... 5% 4.43M 1s
00:45:33 200K .......... .......... .......... .......... .......... 6% 12.8M 1s
00:45:33 250K .......... .......... .......... .......... .......... 7% 17.8M 0s
00:45:33 300K .......... .......... .......... .......... .......... 8% 18.0M 0s
00:45:33 350K .......... .......... .......... .......... .......... 10% 14.5M 0s
00:45:33 400K .......... .......... .......... .......... .......... 11% 25.7M 0s
00:45:33 450K .......... .......... .......... .......... .......... 12% 13.0M 0s
00:45:33 500K .......... .......... .......... .......... .......... 13% 18.0M 0s
00:45:33 550K .......... .......... .......... .......... .......... 15% 13.3M 0s
00:45:33 600K .......... .......... .......... .......... .......... 16% 27.1M 0s
00:45:33 650K .......... .......... .......... .......... .......... 17% 27.5M 0s
00:45:33 700K .......... .......... .......... .......... .......... 18% 15.5M 0s
00:45:33 750K .......... .......... .......... .......... .......... 20% 13.9M 0s
00:45:33 800K .......... .......... .......... .......... .......... 21% 12.0M 0s
00:45:33 850K .......... .......... .......... .......... .......... 22% 39.5M 0s
00:45:33 900K .......... .......... .......... .......... .......... 23% 26.9M 0s
00:45:33 950K .......... .......... .......... .......... .......... 25% 13.4M 0s
00:45:33 1000K .......... .......... .......... .......... .......... 26% 17.8M 0s
00:45:33 1050K .......... .......... .......... .......... .......... 27% 29.9M 0s
00:45:33 1100K .......... .......... .......... .......... .......... 28% 12.7M 0s
00:45:33 1150K .......... .......... .......... .......... .......... 30% 23.3M 0s
00:45:33 1200K .......... .......... .......... .......... .......... 31% 14.5M 0s
00:45:33 1250K .......... .......... .......... .......... .......... 32% 17.5M 0s
00:45:33 1300K .......... .......... .......... .......... .......... 33% 32.8M 0s
00:45:33 1350K .......... .......... .......... .......... .......... 35% 12.4M 0s
00:45:33 1400K .......... .......... .......... .......... .......... 36% 17.8M 0s
00:45:33 1450K .......... .......... .......... .......... .......... 37% 24.9M 0s
00:45:33 1500K .......... .......... .......... .......... .......... 38% 17.3M 0s
00:45:33 1550K .......... .......... .......... .......... .......... 40% 15.0M 0s
00:45:33 1600K .......... .......... .......... .......... .......... 41% 17.3M 0s
00:45:33 1650K .......... .......... .......... .......... .......... 42% 17.5M 0s
00:45:33 1700K .......... .......... .......... .......... .......... 43% 23.0M 0s
00:45:33 1750K .......... .......... .......... .......... .......... 45% 14.8M 0s
00:45:33 1800K .......... .......... .......... .......... .......... 46% 28.9M 0s
00:45:33 1850K .......... .......... .......... .......... .......... 47% 11.1M 0s
00:45:33 1900K .......... .......... .......... .......... .......... 48% 20.4M 0s
00:45:33 1950K .......... .......... .......... .......... .......... 50% 25.5M 0s
00:45:33 2000K .......... .......... .......... .......... .......... 51% 15.0M 0s
00:45:33 2050K .......... .......... .......... .......... .......... 52% 25.9M 0s
00:45:33 2100K .......... .......... .......... .......... .......... 53% 14.1M 0s
00:45:33 2150K .......... .......... .......... .......... .......... 55% 21.2M 0s
00:45:33 2200K .......... .......... .......... .......... .......... 56% 17.2M 0s
00:45:33 2250K .......... .......... .......... .......... .......... 57% 15.6M 0s
00:45:33 2300K .......... .......... .......... .......... .......... 58% 17.2M 0s
00:45:33 2350K .......... .......... .......... .......... .......... 60% 19.2M 0s
00:45:33 2400K .......... .......... .......... .......... .......... 61% 20.6M 0s
00:45:33 2450K .......... .......... .......... .......... .......... 62% 17.4M 0s
00:45:33 2500K .......... .......... .......... .......... .......... 63% 25.1M 0s
00:45:33 2550K .......... .......... .......... .......... .......... 65% 16.0M 0s
00:45:33 2600K .......... .......... .......... .......... .......... 66% 17.6M 0s
00:45:33 2650K .......... .......... .......... .......... .......... 67% 14.9M 0s
00:45:33 2700K .......... .......... .......... .......... .......... 68% 17.5M 0s
00:45:33 2750K .......... .......... .......... .......... .......... 70% 24.6M 0s
00:45:33 2800K .......... .......... .......... .......... .......... 71% 17.5M 0s
00:45:33 2850K .......... .......... .......... .......... .......... 72% 13.7M 0s
00:45:33 2900K .......... .......... .......... .......... .......... 73% 30.3M 0s
00:45:33 2950K .......... .......... .......... .......... .......... 75% 13.3M 0s
00:45:33 3000K .......... .......... .......... .......... .......... 76% 25.0M 0s
00:45:33 3050K .......... .......... .......... .......... .......... 77% 14.6M 0s
00:45:33 3100K .......... .......... .......... .......... .......... 78% 14.0M 0s
00:45:33 3150K .......... .......... .......... .......... .......... 80% 23.8M 0s
00:45:33 3200K .......... .......... .......... .......... .......... 81% 17.4M 0s
00:45:33 3250K .......... .......... .......... .......... .......... 82% 24.3M 0s
00:45:33 3300K .......... .......... .......... .......... .......... 84% 15.1M 0s
00:45:33 3350K .......... .......... .......... .......... .......... 85% 24.2M 0s
00:45:33 3400K .......... .......... .......... .......... .......... 86% 18.8M 0s
00:45:33 3450K .......... .......... .......... .......... .......... 87% 12.7M 0s
00:45:33 3500K .......... .......... .......... .......... .......... 89% 24.3M 0s
00:45:33 3550K .......... .......... .......... .......... .......... 90% 15.2M 0s
00:45:33 3600K .......... .......... .......... .......... .......... 91% 24.9M 0s
00:45:33 3650K .......... .......... .......... .......... .......... 92% 18.9M 0s
00:45:33 3700K .......... .......... .......... .......... .......... 94% 16.2M 0s
00:45:33 3750K .......... .......... .......... .......... .......... 95% 25.4M 0s
00:45:33 3800K .......... .......... .......... .......... .......... 96% 13.1M 0s
00:45:33 3850K .......... .......... .......... .......... .......... 97% 19.9M 0s
00:45:33 3900K .......... .......... .......... .......... .......... 99% 14.4M 0s
00:45:33 3950K .......... .......... .......... ....... 100% 70.9M=0.2s
00:45:33
00:45:33 2026-02-27 00:45:33 (16.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:33
00:45:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:33 --2026-02-27 00:45:33-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:33 HTTP request sent, awaiting response... 200 OK
00:45:33 Length: 234962 (229K) [application/java-archive]
00:45:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:33
00:45:33 0K .......... .......... .......... .......... .......... 21% 19.5M 0s
00:45:33 50K .......... .......... .......... .......... .......... 43% 4.00M 0s
00:45:33 100K .......... .......... .......... .......... .......... 65% 3.96M 0s
00:45:33 150K .......... .......... .......... .......... .......... 87% 19.5M 0s
00:45:33 200K .......... .......... ......... 100% 27.4M=0.03s
00:45:33
00:45:33 2026-02-27 00:45:33 (7.32 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:33
00:45:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:33 --2026-02-27 00:45:33-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:34 HTTP request sent, awaiting response... 200 OK
00:45:34 Length: 192161 (188K) [application/java-archive]
00:45:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:34
00:45:34 0K .......... .......... .......... .......... .......... 26% 19.0M 0s
00:45:34 50K .......... .......... .......... .......... .......... 53% 3.79M 0s
00:45:34 100K .......... .......... .......... .......... .......... 79% 4.26M 0s
00:45:34 150K .......... .......... .......... ....... 100% 15.4M=0.03s
00:45:34
00:45:34 2026-02-27 00:45:34 (6.25 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:34
00:45:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:34 --2026-02-27 00:45:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:34 HTTP request sent, awaiting response... 200 OK
00:45:34 Length: 1037104 (1013K) [application/java-archive]
00:45:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:34
00:45:34 0K .......... .......... .......... .......... .......... 4% 20.0M 0s
00:45:34 50K .......... .......... .......... .......... .......... 9% 3.73M 0s
00:45:34 100K .......... .......... .......... .......... .......... 14% 13.7M 0s
00:45:34 150K .......... .......... .......... .......... .......... 19% 4.83M 0s
00:45:34 200K .......... .......... .......... .......... .......... 24% 16.8M 0s
00:45:34 250K .......... .......... .......... .......... .......... 29% 13.1M 0s
00:45:34 300K .......... .......... .......... .......... .......... 34% 17.0M 0s
00:45:34 350K .......... .......... .......... .......... .......... 39% 16.3M 0s
00:45:34 400K .......... .......... .......... .......... .......... 44% 23.5M 0s
00:45:34 450K .......... .......... .......... .......... .......... 49% 22.1M 0s
00:45:34 500K .......... .......... .......... .......... .......... 54% 19.2M 0s
00:45:34 550K .......... .......... .......... .......... .......... 59% 16.8M 0s
00:45:34 600K .......... .......... .......... .......... .......... 64% 16.0M 0s
00:45:34 650K .......... .......... .......... .......... .......... 69% 14.9M 0s
00:45:34 700K .......... .......... .......... .......... .......... 74% 27.1M 0s
00:45:34 750K .......... .......... .......... .......... .......... 78% 18.2M 0s
00:45:34 800K .......... .......... .......... .......... .......... 83% 13.8M 0s
00:45:34 850K .......... .......... .......... .......... .......... 88% 19.7M 0s
00:45:34 900K .......... .......... .......... .......... .......... 93% 16.0M 0s
00:45:34 950K .......... .......... .......... .......... .......... 98% 27.2M 0s
00:45:34 1000K .......... .. 100% 115M=0.07s
00:45:34
00:45:34 2026-02-27 00:45:34 (13.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:34
00:45:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:34 --2026-02-27 00:45:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:34 HTTP request sent, awaiting response... 200 OK
00:45:34 Length: 33040 (32K) [application/java-archive]
00:45:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:34
00:45:34 0K .......... .......... .......... .. 100% 18.5M=0.002s
00:45:34
00:45:34 2026-02-27 00:45:34 (18.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:34
00:45:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:34 --2026-02-27 00:45:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:34 HTTP request sent, awaiting response... 200 OK
00:45:34 Length: 13758 (13K) [application/java-archive]
00:45:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:34
00:45:34 0K .......... ... 100% 43.3M=0s
00:45:34
00:45:34 2026-02-27 00:45:34 (43.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:34
00:45:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:34 --2026-02-27 00:45:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:35 HTTP request sent, awaiting response... 200 OK
00:45:35 Length: 962220 (940K) [application/java-archive]
00:45:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:35
00:45:35 0K .......... .......... .......... .......... .......... 5% 19.9M 0s
00:45:35 50K .......... .......... .......... .......... .......... 10% 3.71M 0s
00:45:35 100K .......... .......... .......... .......... .......... 15% 17.1M 0s
00:45:35 150K .......... .......... .......... .......... .......... 21% 4.56M 0s
00:45:35 200K .......... .......... .......... .......... .......... 26% 17.3M 0s
00:45:35 250K .......... .......... .......... .......... .......... 31% 12.8M 0s
00:45:35 300K .......... .......... .......... .......... .......... 37% 17.0M 0s
00:45:35 350K .......... .......... .......... .......... .......... 42% 14.5M 0s
00:45:35 400K .......... .......... .......... .......... .......... 47% 25.2M 0s
00:45:35 450K .......... .......... .......... .......... .......... 53% 19.7M 0s
00:45:35 500K .......... .......... .......... .......... .......... 58% 17.1M 0s
00:45:35 550K .......... .......... .......... .......... .......... 63% 16.9M 0s
00:45:35 600K .......... .......... .......... .......... .......... 69% 18.3M 0s
00:45:35 650K .......... .......... .......... .......... .......... 74% 17.9M 0s
00:45:35 700K .......... .......... .......... .......... .......... 79% 20.3M 0s
00:45:35 750K .......... .......... .......... .......... .......... 85% 12.8M 0s
00:45:35 800K .......... .......... .......... .......... .......... 90% 25.1M 0s
00:45:35 850K .......... .......... .......... .......... .......... 95% 17.1M 0s
00:45:35 900K .......... .......... .......... ......... 100% 15.2M=0.07s
00:45:35
00:45:35 2026-02-27 00:45:35 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:35
00:45:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:35 --2026-02-27 00:45:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:35 HTTP request sent, awaiting response... 200 OK
00:45:35 Length: 30963 (30K) [application/java-archive]
00:45:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:35
00:45:35 0K .......... .......... .......... 100% 12.1M=0.002s
00:45:35
00:45:35 2026-02-27 00:45:35 (12.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:35
00:45:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:35 --2026-02-27 00:45:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:35 HTTP request sent, awaiting response... 200 OK
00:45:35 Length: 241618 (236K) [application/java-archive]
00:45:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:35
00:45:35 0K .......... .......... .......... .......... .......... 21% 17.8M 0s
00:45:35 50K .......... .......... .......... .......... .......... 42% 3.77M 0s
00:45:35 100K .......... .......... .......... .......... .......... 63% 17.0M 0s
00:45:35 150K .......... .......... .......... .......... .......... 84% 4.66M 0s
00:45:35 200K .......... .......... .......... ..... 100% 13.2M=0.03s
00:45:35
00:45:35 2026-02-27 00:45:35 (7.27 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:35
00:45:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:35 --2026-02-27 00:45:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:36 HTTP request sent, awaiting response... 200 OK
00:45:36 Length: 91685 (90K) [application/java-archive]
00:45:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:36
00:45:36 0K .......... .......... .......... .......... .......... 55% 17.6M 0s
00:45:36 50K .......... .......... .......... ......... 100% 3.23M=0.01s
00:45:36
00:45:36 2026-02-27 00:45:36 (5.93 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:36
00:45:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:36 --2026-02-27 00:45:36-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:36 HTTP request sent, awaiting response... 200 OK
00:45:36 Length: 66309 (65K) [application/java-archive]
00:45:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:36
00:45:36 0K .......... .......... .......... .......... .......... 77% 17.9M 0s
00:45:36 50K .......... .... 100% 16.5M=0.004s
00:45:36
00:45:36 2026-02-27 00:45:36 (17.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:36
00:45:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:36 --2026-02-27 00:45:36-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:36 HTTP request sent, awaiting response... 200 OK
00:45:36 Length: 593063 (579K) [application/java-archive]
00:45:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:36
00:45:36 0K .......... .......... .......... .......... .......... 8% 20.0M 0s
00:45:36 50K .......... .......... .......... .......... .......... 17% 3.69M 0s
00:45:36 100K .......... .......... .......... .......... .......... 25% 17.9M 0s
00:45:36 150K .......... .......... .......... .......... .......... 34% 4.61M 0s
00:45:36 200K .......... .......... .......... .......... .......... 43% 12.6M 0s
00:45:36 250K .......... .......... .......... .......... .......... 51% 17.1M 0s
00:45:36 300K .......... .......... .......... .......... .......... 60% 13.2M 0s
00:45:36 350K .......... .......... .......... .......... .......... 69% 15.8M 0s
00:45:36 400K .......... .......... .......... .......... .......... 77% 25.2M 0s
00:45:36 450K .......... .......... .......... .......... .......... 86% 17.2M 0s
00:45:36 500K .......... .......... .......... .......... .......... 94% 16.6M 0s
00:45:36 550K .......... .......... ......... 100% 15.1M=0.05s
00:45:36
00:45:36 2026-02-27 00:45:36 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:36
00:45:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:36 --2026-02-27 00:45:36-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:36 HTTP request sent, awaiting response... 200 OK
00:45:36 Length: 1688471 (1.6M) [application/java-archive]
00:45:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:36
00:45:36 0K .......... .......... .......... .......... .......... 3% 20.1M 0s
00:45:36 50K .......... .......... .......... .......... .......... 6% 3.75M 0s
00:45:37 100K .......... .......... .......... .......... .......... 9% 4.19M 0s
00:45:37 150K .......... .......... .......... .......... .......... 12% 14.4M 0s
00:45:37 200K .......... .......... .......... .......... .......... 15% 17.2M 0s
00:45:37 250K .......... .......... .......... .......... .......... 18% 17.1M 0s
00:45:37 300K .......... .......... .......... .......... .......... 21% 10.7M 0s
00:45:37 350K .......... .......... .......... .......... .......... 24% 17.3M 0s
00:45:37 400K .......... .......... .......... .......... .......... 27% 18.1M 0s
00:45:37 450K .......... .......... .......... .......... .......... 30% 24.8M 0s
00:45:37 500K .......... .......... .......... .......... .......... 33% 21.3M 0s
00:45:37 550K .......... .......... .......... .......... .......... 36% 13.7M 0s
00:45:37 600K .......... .......... .......... .......... .......... 39% 15.9M 0s
00:45:37 650K .......... .......... .......... .......... .......... 42% 24.0M 0s
00:45:37 700K .......... .......... .......... .......... .......... 45% 12.6M 0s
00:45:37 750K .......... .......... .......... .......... .......... 48% 24.1M 0s
00:45:37 800K .......... .......... .......... .......... .......... 51% 20.0M 0s
00:45:37 850K .......... .......... .......... .......... .......... 54% 15.0M 0s
00:45:37 900K .......... .......... .......... .......... .......... 57% 18.0M 0s
00:45:37 950K .......... .......... .......... .......... .......... 60% 15.8M 0s
00:45:37 1000K .......... .......... .......... .......... .......... 63% 16.1M 0s
00:45:37 1050K .......... .......... .......... .......... .......... 66% 102M 0s
00:45:37 1100K .......... .......... .......... .......... .......... 69% 11.8M 0s
00:45:37 1150K .......... .......... .......... .......... .......... 72% 15.1M 0s
00:45:37 1200K .......... .......... .......... .......... .......... 75% 18.3M 0s
00:45:37 1250K .......... .......... .......... .......... .......... 78% 15.8M 0s
00:45:37 1300K .......... .......... .......... .......... .......... 81% 247M 0s
00:45:37 1350K .......... .......... .......... .......... .......... 84% 11.1M 0s
00:45:37 1400K .......... .......... .......... .......... .......... 87% 11.1M 0s
00:45:37 1450K .......... .......... .......... .......... .......... 90% 22.0M 0s
00:45:37 1500K .......... .......... .......... .......... .......... 94% 16.4M 0s
00:45:37 1550K .......... .......... .......... .......... .......... 97% 24.5M 0s
00:45:37 1600K .......... .......... .......... .......... ........ 100% 18.8M=0.1s
00:45:37
00:45:37 2026-02-27 00:45:37 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:37
00:45:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:37 --2026-02-27 00:45:37-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:37 HTTP request sent, awaiting response... 200 OK
00:45:37 Length: 36400 (36K) [application/java-archive]
00:45:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:37
00:45:37 0K .......... .......... .......... ..... 100% 25.0M=0.001s
00:45:37
00:45:37 2026-02-27 00:45:37 (25.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:37
00:45:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:37 --2026-02-27 00:45:37-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:37 HTTP request sent, awaiting response... 200 OK
00:45:37 Length: 79195 (77K) [application/java-archive]
00:45:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:37
00:45:37 0K .......... .......... .......... .......... .......... 64% 17.7M 0s
00:45:37 50K .......... .......... ....... 100% 2.39M=0.01s
00:45:37
00:45:37 2026-02-27 00:45:37 (5.42 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:37
00:45:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:37 --2026-02-27 00:45:37-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:37 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:37 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:37 HTTP request sent, awaiting response... 200 OK
00:45:37 Length: 277829 (271K) [application/java-archive]
00:45:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:37
00:45:37 0K .......... .......... .......... .......... .......... 18% 19.8M 0s
00:45:37 50K .......... .......... .......... .......... .......... 36% 3.73M 0s
00:45:38 100K .......... .......... .......... .......... .......... 55% 4.25M 0s
00:45:38 150K .......... .......... .......... .......... .......... 73% 16.0M 0s
00:45:38 200K .......... .......... .......... .......... .......... 92% 17.0M 0s
00:45:38 250K .......... .......... . 100% 21.1M=0.03s
00:45:38
00:45:38 2026-02-27 00:45:38 (7.80 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:38
00:45:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:38 --2026-02-27 00:45:38-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:38 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:38 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:38 HTTP request sent, awaiting response... 200 OK
00:45:38 Length: 579673 (566K) [application/java-archive]
00:45:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:38
00:45:38 0K .......... .......... .......... .......... .......... 8% 17.7M 0s
00:45:38 50K .......... .......... .......... .......... .......... 17% 3.78M 0s
00:45:38 100K .......... .......... .......... .......... .......... 26% 4.28M 0s
00:45:38 150K .......... .......... .......... .......... .......... 35% 20.6M 0s
00:45:38 200K .......... .......... .......... .......... .......... 44% 16.9M 0s
00:45:38 250K .......... .......... .......... .......... .......... 52% 12.8M 0s
00:45:38 300K .......... .......... .......... .......... .......... 61% 16.9M 0s
00:45:38 350K .......... .......... .......... .......... .......... 70% 17.4M 0s
00:45:38 400K .......... .......... .......... .......... .......... 79% 18.1M 0s
00:45:38 450K .......... .......... .......... .......... .......... 88% 15.5M 0s
00:45:38 500K .......... .......... .......... .......... .......... 97% 16.8M 0s
00:45:38 550K .......... ...... 100% 331M=0.05s
00:45:38
00:45:38 2026-02-27 00:45:38 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:38
00:45:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:38 --2026-02-27 00:45:38-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:38 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:38 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:38 HTTP request sent, awaiting response... 200 OK
00:45:38 Length: 175836 (172K) [application/java-archive]
00:45:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:38
00:45:38 0K .......... .......... .......... .......... .......... 29% 18.5M 0s
00:45:38 50K .......... .......... .......... .......... .......... 58% 3.79M 0s
00:45:38 100K .......... .......... .......... .......... .......... 87% 16.5M 0s
00:45:38 150K .......... .......... . 100% 2.38M=0.03s
00:45:38
00:45:38 2026-02-27 00:45:38 (6.12 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:38
00:45:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:38 --2026-02-27 00:45:38-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:38 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:38 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:38 HTTP request sent, awaiting response... 200 OK
00:45:38 Length: 889211 (868K) [application/java-archive]
00:45:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:38
00:45:38 0K .......... .......... .......... .......... .......... 5% 18.4M 0s
00:45:38 50K .......... .......... .......... .......... .......... 11% 3.74M 0s
00:45:38 100K .......... .......... .......... .......... .......... 17% 4.28M 0s
00:45:38 150K .......... .......... .......... .......... .......... 23% 21.1M 0s
00:45:38 200K .......... .......... .......... .......... .......... 28% 17.0M 0s
00:45:38 250K .......... .......... .......... .......... .......... 34% 10.7M 0s
00:45:38 300K .......... .......... .......... .......... .......... 40% 17.7M 0s
00:45:38 350K .......... .......... .......... .......... .......... 46% 21.7M 0s
00:45:38 400K .......... .......... .......... .......... .......... 51% 16.5M 0s
00:45:38 450K .......... .......... .......... .......... .......... 57% 17.3M 0s
00:45:38 500K .......... .......... .......... .......... .......... 63% 17.7M 0s
00:45:38 550K .......... .......... .......... .......... .......... 69% 17.4M 0s
00:45:38 600K .......... .......... .......... .......... .......... 74% 21.1M 0s
00:45:38 650K .......... .......... .......... .......... .......... 80% 16.3M 0s
00:45:38 700K .......... .......... .......... .......... .......... 86% 18.4M 0s
00:45:38 750K .......... .......... .......... .......... .......... 92% 17.4M 0s
00:45:38 800K .......... .......... .......... .......... .......... 97% 9.92M 0s
00:45:38 850K .......... ........ 100% 231M=0.07s
00:45:38
00:45:38 2026-02-27 00:45:38 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:38
00:45:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:38 --2026-02-27 00:45:38-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:39 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:39 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:39 HTTP request sent, awaiting response... 200 OK
00:45:39 Length: 736051 (719K) [application/java-archive]
00:45:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:39
00:45:39 0K .......... .......... .......... .......... .......... 6% 20.5M 0s
00:45:39 50K .......... .......... .......... .......... .......... 13% 3.67M 0s
00:45:39 100K .......... .......... .......... .......... .......... 20% 4.25M 0s
00:45:39 150K .......... .......... .......... .......... .......... 27% 21.5M 0s
00:45:39 200K .......... .......... .......... .......... .......... 34% 12.7M 0s
00:45:39 250K .......... .......... .......... .......... .......... 41% 18.1M 0s
00:45:39 300K .......... .......... .......... .......... .......... 48% 13.3M 0s
00:45:39 350K .......... .......... .......... .......... .......... 55% 18.5M 0s
00:45:39 400K .......... .......... .......... .......... .......... 62% 24.5M 0s
00:45:39 450K .......... .......... .......... .......... .......... 69% 13.4M 0s
00:45:39 500K .......... .......... .......... .......... .......... 76% 19.1M 0s
00:45:39 550K .......... .......... .......... .......... .......... 83% 13.5M 0s
00:45:39 600K .......... .......... .......... .......... .......... 90% 25.0M 0s
00:45:39 650K .......... .......... .......... .......... .......... 97% 18.2M 0s
00:45:39 700K .......... ........ 100% 165M=0.06s
00:45:39
00:45:39 2026-02-27 00:45:39 (11.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:39
00:45:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:39 --2026-02-27 00:45:39-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:39 HTTP request sent, awaiting response... 200 OK
00:45:39 Length: 331034 (323K) [application/java-archive]
00:45:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:39
00:45:39 0K .......... .......... .......... .......... .......... 15% 20.4M 0s
00:45:39 50K .......... .......... .......... .......... .......... 30% 3.69M 0s
00:45:39 100K .......... .......... .......... .......... .......... 46% 13.7M 0s
00:45:39 150K .......... .......... .......... .......... .......... 61% 4.74M 0s
00:45:39 200K .......... .......... .......... .......... .......... 77% 13.1M 0s
00:45:39 250K .......... .......... .......... .......... .......... 92% 17.6M 0s
00:45:39 300K .......... .......... ... 100% 24.8M=0.04s
00:45:39
00:45:39 2026-02-27 00:45:39 (8.55 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:39
00:45:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:39 --2026-02-27 00:45:39-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:39 HTTP request sent, awaiting response... 200 OK
00:45:39 Length: 6749842 (6.4M) [application/java-archive]
00:45:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:39
00:45:39 0K .......... .......... .......... .......... .......... 0% 21.0M 0s
00:45:39 50K .......... .......... .......... .......... .......... 1% 3.94M 1s
00:45:39 100K .......... .......... .......... .......... .......... 2% 13.0M 1s
00:45:39 150K .......... .......... .......... .......... .......... 3% 4.55M 1s
00:45:39 200K .......... .......... .......... .......... .......... 3% 13.1M 1s
00:45:39 250K .......... .......... .......... .......... .......... 4% 17.1M 1s
00:45:39 300K .......... .......... .......... .......... .......... 5% 17.5M 1s
00:45:39 350K .......... .......... .......... .......... .......... 6% 23.6M 1s
00:45:39 400K .......... .......... .......... .......... .......... 6% 15.9M 1s
00:45:39 450K .......... .......... .......... .......... .......... 7% 17.9M 1s
00:45:39 500K .......... .......... .......... .......... .......... 8% 12.9M 1s
00:45:39 550K .......... .......... .......... .......... .......... 9% 24.6M 1s
00:45:39 600K .......... .......... .......... .......... .......... 9% 17.8M 1s
00:45:39 650K .......... .......... .......... .......... .......... 10% 20.4M 0s
00:45:39 700K .......... .......... .......... .......... .......... 11% 13.4M 0s
00:45:39 750K .......... .......... .......... .......... .......... 12% 53.8M 0s
00:45:39 800K .......... .......... .......... .......... .......... 12% 9.93M 0s
00:45:39 850K .......... .......... .......... .......... .......... 13% 18.5M 0s
00:45:39 900K .......... .......... .......... .......... .......... 14% 22.1M 0s
00:45:39 950K .......... .......... .......... .......... .......... 15% 13.2M 0s
00:45:39 1000K .......... .......... .......... .......... .......... 15% 119M 0s
00:45:39 1050K .......... .......... .......... .......... .......... 16% 10.7M 0s
00:45:39 1100K .......... .......... .......... .......... .......... 17% 31.6M 0s
00:45:39 1150K .......... .......... .......... .......... .......... 18% 30.5M 0s
00:45:39 1200K .......... .......... .......... .......... .......... 18% 9.04M 0s
00:45:39 1250K .......... .......... .......... .......... .......... 19% 90.3M 0s
00:45:39 1300K .......... .......... .......... .......... .......... 20% 10.4M 0s
00:45:39 1350K .......... .......... .......... .......... .......... 21% 39.2M 0s
00:45:39 1400K .......... .......... .......... .......... .......... 21% 15.6M 0s
00:45:39 1450K .......... .......... .......... .......... .......... 22% 16.8M 0s
00:45:39 1500K .......... .......... .......... .......... .......... 23% 16.9M 0s
00:45:39 1550K .......... .......... .......... .......... .......... 24% 20.1M 0s
00:45:39 1600K .......... .......... .......... .......... .......... 25% 14.1M 0s
00:45:39 1650K .......... .......... .......... .......... .......... 25% 17.8M 0s
00:45:39 1700K .......... .......... .......... .......... .......... 26% 20.6M 0s
00:45:39 1750K .......... .......... .......... .......... .......... 27% 18.4M 0s
00:45:39 1800K .......... .......... .......... .......... .......... 28% 18.4M 0s
00:45:39 1850K .......... .......... .......... .......... .......... 28% 21.0M 0s
00:45:39 1900K .......... .......... .......... .......... .......... 29% 11.0M 0s
00:45:39 1950K .......... .......... .......... .......... .......... 30% 20.8M 0s
00:45:39 2000K .......... .......... .......... .......... .......... 31% 25.2M 0s
00:45:39 2050K .......... .......... .......... .......... .......... 31% 19.3M 0s
00:45:39 2100K .......... .......... .......... .......... .......... 32% 7.35M 0s
00:45:39 2150K .......... .......... .......... .......... .......... 33% 18.8M 0s
00:45:39 2200K .......... .......... .......... .......... .......... 34% 22.1M 0s
00:45:39 2250K .......... .......... .......... .......... .......... 34% 27.3M 0s
00:45:39 2300K .......... .......... .......... .......... .......... 35% 25.6M 0s
00:45:39 2350K .......... .......... .......... .......... .......... 36% 26.1M 0s
00:45:39 2400K .......... .......... .......... .......... .......... 37% 8.50M 0s
00:45:39 2450K .......... .......... .......... .......... .......... 37% 32.8M 0s
00:45:39 2500K .......... .......... .......... .......... .......... 38% 17.7M 0s
00:45:39 2550K .......... .......... .......... .......... .......... 39% 19.8M 0s
00:45:39 2600K .......... .......... .......... .......... .......... 40% 33.8M 0s
00:45:39 2650K .......... .......... .......... .......... .......... 40% 9.00M 0s
00:45:40 2700K .......... .......... .......... .......... .......... 41% 31.5M 0s
00:45:40 2750K .......... .......... .......... .......... .......... 42% 13.8M 0s
00:45:40 2800K .......... .......... .......... .......... .......... 43% 29.4M 0s
00:45:40 2850K .......... .......... .......... .......... .......... 43% 27.8M 0s
00:45:40 2900K .......... .......... .......... .......... .......... 44% 9.58M 0s
00:45:40 2950K .......... .......... .......... .......... .......... 45% 30.8M 0s
00:45:40 3000K .......... .......... .......... .......... .......... 46% 13.1M 0s
00:45:40 3050K .......... .......... .......... .......... .......... 47% 26.0M 0s
00:45:40 3100K .......... .......... .......... .......... .......... 47% 20.5M 0s
00:45:40 3150K .......... .......... .......... .......... .......... 48% 9.90M 0s
00:45:40 3200K .......... .......... .......... .......... .......... 49% 15.1M 0s
00:45:40 3250K .......... .......... .......... .......... .......... 50% 34.0M 0s
00:45:40 3300K .......... .......... .......... .......... .......... 50% 23.1M 0s
00:45:40 3350K .......... .......... .......... .......... .......... 51% 25.7M 0s
00:45:40 3400K .......... .......... .......... .......... .......... 52% 18.3M 0s
00:45:40 3450K .......... .......... .......... .......... .......... 53% 13.6M 0s
00:45:40 3500K .......... .......... .......... .......... .......... 53% 14.5M 0s
00:45:40 3550K .......... .......... .......... .......... .......... 54% 21.0M 0s
00:45:40 3600K .......... .......... .......... .......... .......... 55% 24.7M 0s
00:45:40 3650K .......... .......... .......... .......... .......... 56% 26.3M 0s
00:45:40 3700K .......... .......... .......... .......... .......... 56% 10.7M 0s
00:45:40 3750K .......... .......... .......... .......... .......... 57% 17.0M 0s
00:45:40 3800K .......... .......... .......... .......... .......... 58% 19.7M 0s
00:45:40 3850K .......... .......... .......... .......... .......... 59% 23.6M 0s
00:45:40 3900K .......... .......... .......... .......... .......... 59% 23.8M 0s
00:45:40 3950K .......... .......... .......... .......... .......... 60% 13.3M 0s
00:45:40 4000K .......... .......... .......... .......... .......... 61% 11.4M 0s
00:45:40 4050K .......... .......... .......... .......... .......... 62% 39.1M 0s
00:45:40 4100K .......... .......... .......... .......... .......... 62% 24.0M 0s
00:45:40 4150K .......... .......... .......... .......... .......... 63% 18.3M 0s
00:45:40 4200K .......... .......... .......... .......... .......... 64% 12.8M 0s
00:45:40 4250K .......... .......... .......... .......... .......... 65% 12.6M 0s
00:45:40 4300K .......... .......... .......... .......... .......... 65% 25.6M 0s
00:45:40 4350K .......... .......... .......... .......... .......... 66% 23.8M 0s
00:45:40 4400K .......... .......... .......... .......... .......... 67% 25.4M 0s
00:45:40 4450K .......... .......... .......... .......... .......... 68% 12.9M 0s
00:45:40 4500K .......... .......... .......... .......... .......... 69% 16.2M 0s
00:45:40 4550K .......... .......... .......... .......... .......... 69% 17.2M 0s
00:45:40 4600K .......... .......... .......... .......... .......... 70% 17.4M 0s
00:45:40 4650K .......... .......... .......... .......... .......... 71% 34.2M 0s
00:45:40 4700K .......... .......... .......... .......... .......... 72% 14.0M 0s
00:45:40 4750K .......... .......... .......... .......... .......... 72% 15.7M 0s
00:45:40 4800K .......... .......... .......... .......... .......... 73% 23.4M 0s
00:45:40 4850K .......... .......... .......... .......... .......... 74% 13.7M 0s
00:45:40 4900K .......... .......... .......... .......... .......... 75% 29.1M 0s
00:45:40 4950K .......... .......... .......... .......... .......... 75% 13.0M 0s
00:45:40 5000K .......... .......... .......... .......... .......... 76% 13.9M 0s
00:45:40 5050K .......... .......... .......... .......... .......... 77% 26.6M 0s
00:45:40 5100K .......... .......... .......... .......... .......... 78% 15.6M 0s
00:45:40 5150K .......... .......... .......... .......... .......... 78% 27.1M 0s
00:45:40 5200K .......... .......... .......... .......... .......... 79% 15.1M 0s
00:45:40 5250K .......... .......... .......... .......... .......... 80% 14.2M 0s
00:45:40 5300K .......... .......... .......... .......... .......... 81% 24.1M 0s
00:45:40 5350K .......... .......... .......... .......... .......... 81% 15.3M 0s
00:45:40 5400K .......... .......... .......... .......... .......... 82% 19.2M 0s
00:45:40 5450K .......... .......... .......... .......... .......... 83% 16.5M 0s
00:45:40 5500K .......... .......... .......... .......... .......... 84% 34.4M 0s
00:45:40 5550K .......... .......... .......... .......... .......... 84% 13.8M 0s
00:45:40 5600K .......... .......... .......... .......... .......... 85% 12.9M 0s
00:45:40 5650K .......... .......... .......... .......... .......... 86% 25.9M 0s
00:45:40 5700K .......... .......... .......... .......... .......... 87% 16.4M 0s
00:45:40 5750K .......... .......... .......... .......... .......... 87% 28.5M 0s
00:45:40 5800K .......... .......... .......... .......... .......... 88% 15.1M 0s
00:45:40 5850K .......... .......... .......... .......... .......... 89% 29.1M 0s
00:45:40 5900K .......... .......... .......... .......... .......... 90% 14.3M 0s
00:45:40 5950K .......... .......... .......... .......... .......... 91% 13.2M 0s
00:45:40 6000K .......... .......... .......... .......... .......... 91% 32.0M 0s
00:45:40 6050K .......... .......... .......... .......... .......... 92% 14.7M 0s
00:45:40 6100K .......... .......... .......... .......... .......... 93% 28.6M 0s
00:45:40 6150K .......... .......... .......... .......... .......... 94% 11.4M 0s
00:45:40 6200K .......... .......... .......... .......... .......... 94% 17.2M 0s
00:45:40 6250K .......... .......... .......... .......... .......... 95% 30.8M 0s
00:45:40 6300K .......... .......... .......... .......... .......... 96% 19.2M 0s
00:45:40 6350K .......... .......... .......... .......... .......... 97% 23.6M 0s
00:45:40 6400K .......... .......... .......... .......... .......... 97% 9.99M 0s
00:45:40 6450K .......... .......... .......... .......... .......... 98% 27.5M 0s
00:45:40 6500K .......... .......... .......... .......... .......... 99% 18.0M 0s
00:45:40 6550K .......... .......... .......... .......... . 100% 23.7M=0.4s
00:45:40
00:45:40 2026-02-27 00:45:40 (16.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:40
00:45:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:40 --2026-02-27 00:45:40-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:40 HTTP request sent, awaiting response... 200 OK
00:45:40 Length: 1732435 (1.7M) [application/java-archive]
00:45:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:40
00:45:40 0K .......... .......... .......... .......... .......... 2% 3.85M 0s
00:45:40 50K .......... .......... .......... .......... .......... 5% 9.06M 0s
00:45:40 100K .......... .......... .......... .......... .......... 8% 4.81M 0s
00:45:40 150K .......... .......... .......... .......... .......... 11% 16.4M 0s
00:45:40 200K .......... .......... .......... .......... .......... 14% 14.0M 0s
00:45:40 250K .......... .......... .......... .......... .......... 17% 13.8M 0s
00:45:40 300K .......... .......... .......... .......... .......... 20% 14.4M 0s
00:45:40 350K .......... .......... .......... .......... .......... 23% 14.5M 0s
00:45:40 400K .......... .......... .......... .......... .......... 26% 24.9M 0s
00:45:40 450K .......... .......... .......... .......... .......... 29% 15.8M 0s
00:45:40 500K .......... .......... .......... .......... .......... 32% 24.3M 0s
00:45:40 550K .......... .......... .......... .......... .......... 35% 14.0M 0s
00:45:40 600K .......... .......... .......... .......... .......... 38% 15.3M 0s
00:45:40 650K .......... .......... .......... .......... .......... 41% 13.2M 0s
00:45:40 700K .......... .......... .......... .......... .......... 44% 79.0M 0s
00:45:40 750K .......... .......... .......... .......... .......... 47% 19.7M 0s
00:45:40 800K .......... .......... .......... .......... .......... 50% 13.5M 0s
00:45:40 850K .......... .......... .......... .......... .......... 53% 15.9M 0s
00:45:40 900K .......... .......... .......... .......... .......... 56% 12.6M 0s
00:45:40 950K .......... .......... .......... .......... .......... 59% 94.8M 0s
00:45:40 1000K .......... .......... .......... .......... .......... 62% 20.0M 0s
00:45:40 1050K .......... .......... .......... .......... .......... 65% 14.5M 0s
00:45:40 1100K .......... .......... .......... .......... .......... 67% 14.1M 0s
00:45:40 1150K .......... .......... .......... .......... .......... 70% 11.3M 0s
00:45:40 1200K .......... .......... .......... .......... .......... 73% 152M 0s
00:45:40 1250K .......... .......... .......... .......... .......... 76% 23.8M 0s
00:45:40 1300K .......... .......... .......... .......... .......... 79% 12.2M 0s
00:45:40 1350K .......... .......... .......... .......... .......... 82% 17.4M 0s
00:45:40 1400K .......... .......... .......... .......... .......... 85% 19.5M 0s
00:45:40 1450K .......... .......... .......... .......... .......... 88% 20.7M 0s
00:45:40 1500K .......... .......... .......... .......... .......... 91% 22.2M 0s
00:45:40 1550K .......... .......... .......... .......... .......... 94% 12.3M 0s
00:45:40 1600K .......... .......... .......... .......... .......... 97% 18.0M 0s
00:45:40 1650K .......... .......... .......... .......... . 100% 17.1M=0.1s
00:45:40
00:45:40 2026-02-27 00:45:40 (14.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:40
00:45:40 + for x in *.jar
00:45:40 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:40 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:40 ++ deactivate nondestructive
00:45:40 ++ '[' -n '' ']'
00:45:40 ++ '[' -n '' ']'
00:45:40 ++ hash -r
00:45:40 ++ '[' -n '' ']'
00:45:40 ++ unset VIRTUAL_ENV
00:45:40 ++ unset VIRTUAL_ENV_PROMPT
00:45:40 ++ '[' '!' nondestructive = nondestructive ']'
00:45:40 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:40 ++ export VIRTUAL_ENV
00:45:40 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:40 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:40 ++ export PATH
00:45:40 ++ '[' -n '' ']'
00:45:40 ++ '[' -z '' ']'
00:45:40 ++ _OLD_VIRTUAL_PS1=
00:45:40 ++ PS1='(.venv3) '
00:45:40 ++ export PS1
00:45:40 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:40 ++ export VIRTUAL_ENV_PROMPT
00:45:40 ++ hash -r
00:45:40 + pip install -U pip
00:45:41 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:41 Collecting pip
00:45:41 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:41 Installing collected packages: pip
00:45:41 Attempting uninstall: pip
00:45:41 Found existing installation: pip 22.3.1
00:45:41 Uninstalling pip-22.3.1:
00:45:41 Successfully uninstalled pip-22.3.1
00:45:42 Successfully installed pip-26.0.1
00:45:42 WARNING: There was an error checking the latest version of pip.
00:45:42 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:42 Collecting zeroc-ice==3.6.5
00:45:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.9 MB/s 0:00:01
00:45:45 Installing collected packages: zeroc-ice
00:45:46 Successfully installed zeroc-ice-3.6.5
00:45:46 + pip install markdown
00:45:46 Collecting markdown
00:45:46 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:46 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:46 Installing collected packages: markdown
00:45:46 Successfully installed markdown-3.10.2
00:45:46 + pip install reportlab
00:45:47 Collecting reportlab
00:45:47 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:47 Collecting pillow>=9.0.0 (from reportlab)
00:45:47 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:47 Collecting charset-normalizer (from reportlab)
00:45:47 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:47 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:47 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:47 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:47 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:48
00:45:48 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:48 + pip install omego
00:45:48 Collecting omego
00:45:48 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:45:48 Collecting future (from omego)
00:45:48 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:48 Collecting yaclifw>=0.1.1 (from omego)
00:45:48 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:48 Collecting six (from yaclifw>=0.1.1->omego)
00:45:48 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:48 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:45:48 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:48 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:48 Installing collected packages: six, future, yaclifw, omego
00:45:49
00:45:49 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:45:49 + pip install tables
00:45:49 Collecting tables
00:45:49 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:45:49 Collecting numpy>=1.20.0 (from tables)
00:45:49 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:50 Collecting numexpr>=2.6.2 (from tables)
00:45:50 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:50 Collecting packaging (from tables)
00:45:50 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:50 Collecting py-cpuinfo (from tables)
00:45:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:50 Collecting blosc2>=2.3.0 (from tables)
00:45:50 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:45:50 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:50 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:50 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:50 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:50 Collecting requests (from blosc2>=2.3.0->tables)
00:45:50 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:50 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:50 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:50 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:50 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:50 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:50 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:45:50 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:45:50 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:45:50 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:50 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:50 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:50 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:50 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:50 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:50 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:50 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:50 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:45:50 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:54
00:45:54 Successfully installed blosc2-4.0.0 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.0 urllib3-2.6.3
00:45:54 + pip install jinja2
00:45:54 Collecting jinja2
00:45:54 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:54 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:54 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:54 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:54 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:54 Installing collected packages: MarkupSafe, jinja2
00:45:54
00:45:54 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:54 + pip install omero-py
00:45:55 Collecting omero-py
00:45:55 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:45:55 Collecting appdirs (from omero-py)
00:45:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:45:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:45:55 Collecting PyYAML (from omero-py)
00:45:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:55 Collecting portalocker (from omero-py)
00:45:55 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:45:55 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:45:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:55 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:55 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:57
00:45:57 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:45:57 + pip install pyarrow
00:45:57 Collecting pyarrow
00:45:57 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:45:57 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:45:58 Installing collected packages: pyarrow
00:45:59 Successfully installed pyarrow-23.0.1
00:45:59 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:59 Collecting omero-metadata
00:45:59 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-sxmix8z0/omero-metadata_c4a156bf11f3481998238ee31068c31c
00:45:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-sxmix8z0/omero-metadata_c4a156bf11f3481998238ee31068c31c
00:46:00 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 506e0c3a7c82cf14dfd21279c26aef5ddabd6e34
00:46:00 Installing build dependencies: started
00:46:01 Installing build dependencies: finished with status 'done'
00:46:01 Getting requirements to build wheel: started
00:46:01 Getting requirements to build wheel: finished with status 'done'
00:46:01 Preparing metadata (pyproject.toml): started
00:46:02 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:02 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:46:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:02 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:03 Collecting pandas (from omero-metadata)
00:46:03 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:46:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:46:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:04 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:04 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:04 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:04 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:46:04 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:46:04 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:04 Building wheels for collected packages: omero-metadata
00:46:04 Building wheel for omero-metadata (pyproject.toml): started
00:46:04 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:04 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=b2e0a47536c84383904203c369e63e60bab18d0db41434cc9d5b181f410b0a90
00:46:04 Stored in directory: /tmp/pip-ephem-wheel-cache-igzx__r2/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:04 Successfully built omero-metadata
00:46:04 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:10
00:46:10 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:46:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:10 Collecting omero-cli-render
00:46:10 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-l06bctzu/omero-cli-render_cc82b3b77c0b43fab06e8c3765964412
00:46:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-l06bctzu/omero-cli-render_cc82b3b77c0b43fab06e8c3765964412
00:46:11 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:12 Switched to a new branch 'merge_ci'
00:46:12 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:12 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0c5410011a78c799510a66ba0ef2b7ea911d5071
00:46:12 Installing build dependencies: started
00:46:12 Installing build dependencies: finished with status 'done'
00:46:12 Getting requirements to build wheel: started
00:46:13 Getting requirements to build wheel: finished with status 'done'
00:46:13 Preparing metadata (pyproject.toml): started
00:46:13 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:46:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:13 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:46:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:46:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:13 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:46:13 Building wheels for collected packages: omero-cli-render
00:46:13 Building wheel for omero-cli-render (pyproject.toml): started
00:46:13 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:13 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=483d08ecf3963831921e4acc99b81b5e80c00925d28388987bd573328276a250
00:46:13 Stored in directory: /tmp/pip-ephem-wheel-cache-vbrswn9k/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:13 Successfully built omero-cli-render
00:46:13 Installing collected packages: omero-cli-render
00:46:13 Successfully installed omero-cli-render-0.8.2.dev0
00:46:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:13 Collecting omero-cli-duplicate
00:46:13 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ptsuxeld/omero-cli-duplicate_11a010030e104016b290e1ef9b166c47
00:46:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ptsuxeld/omero-cli-duplicate_11a010030e104016b290e1ef9b166c47
00:46:14 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:15 Switched to a new branch 'merge_ci'
00:46:15 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:15 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit f6e7d798aca151538ec2db28e3a3841a91f1a181
00:46:15 Installing build dependencies: started
00:46:15 Installing build dependencies: finished with status 'done'
00:46:15 Getting requirements to build wheel: started
00:46:16 Getting requirements to build wheel: finished with status 'done'
00:46:16 Preparing metadata (pyproject.toml): started
00:46:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:16 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:46:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:46:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:46:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:16 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:46:16 Building wheels for collected packages: omero-cli-duplicate
00:46:16 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:16 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:16 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=fb0dde64f9c76a1e6ae88681c7f4a73ce62801a6ca1be7d1e0adcfca5015206f
00:46:16 Stored in directory: /tmp/pip-ephem-wheel-cache-n_s04rg7/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:16 Successfully built omero-cli-duplicate
00:46:16 Installing collected packages: omero-cli-duplicate
00:46:16 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:16 Collecting omero-cli-zarr
00:46:16 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-gsa82vi3/omero-cli-zarr_adf947314478478c869c91c9cf27094c
00:46:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-gsa82vi3/omero-cli-zarr_adf947314478478c869c91c9cf27094c
00:46:17 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:18 Switched to a new branch 'merge_ci'
00:46:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:18 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit cdd394abbff9bd4e2a3e759d9e2fa69eabd471fe
00:46:18 Installing build dependencies: started
00:46:18 Installing build dependencies: finished with status 'done'
00:46:18 Getting requirements to build wheel: started
00:46:19 Getting requirements to build wheel: finished with status 'done'
00:46:19 Installing backend dependencies: started
00:46:20 Installing backend dependencies: finished with status 'done'
00:46:20 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:46:20 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:46:20 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:46:20 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.2)
00:46:20 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:20 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:46:20 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:20 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:20 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:20 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:46:21 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:46:21 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:21 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:46:21 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:46:21 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:21 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:21 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:46:21 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:21 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:46:21 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:21 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:46:21 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:46:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:21 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:21 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached aiobotocore-3.2.0-py3-none-any.whl.metadata (26 kB)
00:46:21 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:21 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:22 Collecting botocore<1.42.56,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached botocore-1.42.55-py3-none-any.whl.metadata (5.9 kB)
00:46:22 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:46:22 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:22 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:22 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:46:22 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:22 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:22 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:22 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:22 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:22 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:23 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:23 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:46:23 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.56,>=1.42.53->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:46:23 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
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00:46:23 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:23 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:23 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:23 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:23 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:23 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:23 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:23 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:23 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:23 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:23 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:23 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.4)
00:46:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:46:23 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:46:23 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:46:23 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:23 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:23 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:46:23 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:23 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:23 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:46:23 Using cached aiobotocore-3.2.0-py3-none-any.whl (87 kB)
00:46:23 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:23 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:23 Using cached botocore-1.42.55-py3-none-any.whl (14.6 MB)
00:46:23 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:23 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:23 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:46:23 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:23 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:23 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:23 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:23 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:23 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:23 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:23 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:23 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:23 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:23 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:46:23 Using cached tifffile-2026.2.24-py3-none-any.whl (243 kB)
00:46:23 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:23 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:23 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:23 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:23 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:23 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:23 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:23 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:23 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:46:24 Building wheels for collected packages: omero-cli-zarr
00:46:24 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:24 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:24 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev160+gcdd394a-py3-none-any.whl size=38169 sha256=a0aaea286d5f0c8d359009894bbfcb690c2ad705c85d1d52c7f7e894f1a94c64
00:46:24 Stored in directory: /tmp/pip-ephem-wheel-cache-oa6axkha/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:24 Successfully built omero-cli-zarr
00:46:24 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:33
00:46:33 Successfully installed aiobotocore-3.2.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.55 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev160+gcdd394a partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.2.24 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:34 + pip install omero-certificates
00:46:34 Collecting omero-certificates
00:46:34 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:34 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:46:34 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:34 Installing collected packages: omero-certificates
00:46:34 Successfully installed omero-certificates-0.4.0
00:46:34 + for x in *.tar.gz
00:46:34 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:35 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:35 Installing build dependencies: started
00:46:35 Installing build dependencies: finished with status 'done'
00:46:35 Getting requirements to build wheel: started
00:46:36 Getting requirements to build wheel: finished with status 'done'
00:46:36 Preparing metadata (pyproject.toml): started
00:46:36 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:36 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:36 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:46:36 Building wheels for collected packages: omero-dropbox
00:46:36 Building wheel for omero-dropbox (pyproject.toml): started
00:46:36 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:36 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=8e09f5639d1c20e7a109d861de7593ac28213f34ccfd7852597101e2443d50fc
00:46:36 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:36 Successfully built omero-dropbox
00:46:36 Installing collected packages: omero-dropbox
00:46:36 Successfully installed omero-dropbox-5.7.1.dev0
00:46:36 + for x in *.tar.gz
00:46:36 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:37 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:37 Installing build dependencies: started
00:46:38 Installing build dependencies: finished with status 'done'
00:46:38 Getting requirements to build wheel: started
00:46:38 Getting requirements to build wheel: finished with status 'done'
00:46:38 Preparing metadata (pyproject.toml): started
00:46:38 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:38 Building wheels for collected packages: omero_marshal
00:46:38 Building wheel for omero_marshal (pyproject.toml): started
00:46:38 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:38 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=1aab16321a98bb80b08f8fa32f92f30a6763a0cf7e8f82705e7d3715d3f92728
00:46:38 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:38 Successfully built omero_marshal
00:46:38 Installing collected packages: omero_marshal
00:46:39 Successfully installed omero_marshal-0.9.2.dev0
00:46:39 + for x in *.tar.gz
00:46:39 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:39 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:39 Installing build dependencies: started
00:46:40 Installing build dependencies: finished with status 'done'
00:46:40 Getting requirements to build wheel: started
00:46:40 Getting requirements to build wheel: finished with status 'done'
00:46:40 Preparing metadata (pyproject.toml): started
00:46:41 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:41 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.2.25)
00:46:41 Building wheels for collected packages: omero-py
00:46:41 Building wheel for omero-py (pyproject.toml): started
00:46:42 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:42 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=bd72c9339a9f781f8c25c82721b882fee903e1cf74705a69365e1764fe5d8714
00:46:42 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:42 Successfully built omero-py
00:46:42 Installing collected packages: omero-py
00:46:42 Attempting uninstall: omero-py
00:46:42 Found existing installation: omero-py 5.22.0
00:46:42 Uninstalling omero-py-5.22.0:
00:46:42 Successfully uninstalled omero-py-5.22.0
00:46:44 Successfully installed omero-py-5.22.1.dev0
00:46:44 + for x in *.tar.gz
00:46:44 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:44 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:44 Installing build dependencies: started
00:46:45 Installing build dependencies: finished with status 'done'
00:46:45 Getting requirements to build wheel: started
00:46:45 Getting requirements to build wheel: finished with status 'done'
00:46:45 Preparing metadata (pyproject.toml): started
00:46:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:46 Building wheels for collected packages: omero-scripts
00:46:46 Building wheel for omero-scripts (pyproject.toml): started
00:46:46 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:46 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=e8d74eb3c8d7de18695584b212990bf2cfe48599311c33c6a2b52a2a5b7fa144
00:46:46 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:46 Successfully built omero-scripts
00:46:46 Installing collected packages: omero-scripts
00:46:46 Successfully installed omero-scripts-5.10.1.dev0
00:46:46 + for x in *.tar.gz
00:46:46 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:47 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:47 Installing build dependencies: started
00:46:48 Installing build dependencies: finished with status 'done'
00:46:48 Getting requirements to build wheel: started
00:46:48 Getting requirements to build wheel: finished with status 'done'
00:46:48 Preparing metadata (pyproject.toml): started
00:46:48 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:48 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:48 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:48 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:46:48 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:48 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:48 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:48 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:49 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:49 Downloading whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:46:49 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:49 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:49 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:49 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:49 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:49 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:49 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:49 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:49 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:49 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:49 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:49 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:49 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:49 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:49 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:49 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:46:49 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:49 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:49 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:49 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:46:49 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:49 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:49 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:49 Downloading whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:46:49 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:49 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:49 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:49 Building wheels for collected packages: omero-web
00:46:49 Building wheel for omero-web (pyproject.toml): started
00:46:50 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:50 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=5c88b101dce5b2c4b4246677596be39292d8c3a218ff80926aef09c4dcbb99a9
00:46:50 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:50 Successfully built omero-web
00:46:50 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:53
00:46:53 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
00:46:53 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:53 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:53 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:53 --2026-02-27 00:46:53-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:53 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ...
00:46:53 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:46:53 HTTP request sent, awaiting response... 200 OK
00:46:53 Length: 135020 (132K) [text/plain]
00:46:53 Saving to: ‘Figure_To_Pdf.py’
00:46:53
00:46:53 0K .......... .......... .......... .......... .......... 37% 4.57M 0s
00:46:53 50K .......... .......... .......... .......... .......... 75% 9.11M 0s
00:46:53 100K .......... .......... .......... . 100% 5.99M=0.02s
00:46:53
00:46:53 2026-02-27 00:46:53 (6.06 MB/s) - ‘Figure_To_Pdf.py’ saved [135020/135020]
00:46:53
00:46:53 + chmod 755 Figure_To_Pdf.py
00:46:53 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:53 + omero config set omero.db.name OMERO-server
00:46:55 + omero config set omero.db.host pg
00:46:57 + omero config set omero.db.user postgres
00:46:59 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:01 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:03 + omero config set omero.db.poolsize 25
00:47:05 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:07 + omero config set omero.security.trustStorePassword changeit
00:47:09 + omero config set omero.mail.config true
00:47:11 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:13 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:15 + omero certificates
00:47:17 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:17 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:17 + '[' false = true ']'
00:47:17 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:17 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:17 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:17 2026-02-27 00:47:17,508 [ omego.db] DEBUG dbcommand => upgrade
00:47:17 2026-02-27 00:47:17,508 [ omego.db] DEBUG dbhost => localhost
00:47:17 2026-02-27 00:47:17,508 [ omego.db] DEBUG dbname => OMERO-server
00:47:17 2026-02-27 00:47:17,508 [ omego.db] DEBUG dbpass => omero
00:47:17 2026-02-27 00:47:17,509 [ omego.db] DEBUG dbuser => omero
00:47:17 2026-02-27 00:47:17,509 [ omego.db] DEBUG rootpass => omero
00:47:17 2026-02-27 00:47:17,509 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:17 2026-02-27 00:47:17,509 [omego.extern] INFO Executing : omero version
00:47:19 OMERO.py version:
00:47:19 OMERO.server version:
00:47:19 5.6.3-594-85732176e5-ice36-b65
00:47:19 5.22.1.dev0
00:47:19 2026-02-27 00:47:19,519 [omego.extern] INFO Completed [2.010 s]
00:47:19 2026-02-27 00:47:19,519 [omego.extern] DEBUG Using omero CLI from omero
00:47:19 2026-02-27 00:47:19,519 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:19 2026-02-27 00:47:19,519 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:19 2026-02-27 00:47:19,519 [omego.extern] INFO Executing : omero config get --show-password
00:47:21 2026-02-27 00:47:21,448 [omego.extern] INFO Completed [1.929 s]
00:47:21 2026-02-27 00:47:21,448 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:21 2026-02-27 00:47:21,448 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:21 2026-02-27 00:47:21,454 [omego.extern] INFO Completed [0.005 s]
00:47:21 2026-02-27 00:47:21,454 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:21 2026-02-27 00:47:21,454 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:21
00:47:21 2026-02-27 00:47:21,454 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:21 2026-02-27 00:47:21,454 [omego.extern] INFO Executing : omero config get --show-password
00:47:23 2026-02-27 00:47:23,481 [omego.extern] INFO Completed [2.027 s]
00:47:23 2026-02-27 00:47:23,481 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:23 2026-02-27 00:47:23,481 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:23 2026-02-27 00:47:23,490 [omego.extern] INFO Completed [0.009 s]
00:47:23 2026-02-27 00:47:23,490 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:47:23 2026-02-27 00:47:23,491 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:23 2026-02-27 00:47:23,491 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:23 2026-02-27 00:47:23,491 [omego.extern] INFO Executing : omero config get --show-password
00:47:25 2026-02-27 00:47:25,455 [omego.extern] INFO Completed [1.964 s]
00:47:25 2026-02-27 00:47:25,455 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:25 2026-02-27 00:47:25,455 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:25 2026-02-27 00:47:25,465 [omego.extern] INFO Completed [0.010 s]
00:47:25 2026-02-27 00:47:25,465 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:25 2026-02-27 00:47:25,465 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:25 2026-02-27 00:47:25,467 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:25 + export LANG=en_US.UTF-8
00:47:25 + LANG=en_US.UTF-8
00:47:25 + export LANGUAGE=en_US:en
00:47:25 + LANGUAGE=en_US:en
00:47:25 + export LC_ALL=en_US.UTF-8
00:47:25 + LC_ALL=en_US.UTF-8
00:47:25 + BUILD_ID=DONT_KILL_ME
00:47:25 + omero admin start
00:47:30 No descriptor given. Using etc/grid/default.xml
00:47:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:38 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:38 Waiting on startup. Use CTRL-C to exit
00:47:38 + omero admin waitup
00:47:40 Waiting on startup. Use CTRL-C to exit
00:47:40 + omero admin diagnostics
00:47:42
00:47:42 ================================================================================
00:47:42 OMERO Diagnostics (admin)
00:47:42 ================================================================================
00:47:42
00:47:42 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:42 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:42 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:42 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:42 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:42 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:42
00:47:42 Component: OMERO.py 5.22.1.dev0
00:47:42 Component: OMERO.server 5.6.3-594-85732176e5-ice36-b65
00:47:42
00:47:42 Server: icegridnode running
00:47:42 Server: Blitz-0 active (pid = 32352, enabled)
00:47:42 Server: Indexer-0 activating (enabled)
00:47:42 Server: OMERO.Glacier2 active (pid = 32387, enabled)
00:47:42 Server: OMERO.IceStorm active (pid = 32403, enabled)
00:47:42 Server: Processor-0 active (pid = 32414, enabled)
00:47:42 Server: Tables-0 active (pid = 32427, enabled)
00:47:42
00:47:42 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:42 Log files: Blitz-0.log 30.9 KB errors=0 warnings=1
00:47:42 Log files: DropBox.log n/a
00:47:42 Log files: FileServer.log n/a
00:47:42 Log files: Indexer-0.log 238 B
00:47:42 Log files: MonitorServer.log n/a
00:47:42 Log files: Processor-0.log 735 B
00:47:42 Log files: Tables-0.log 961 B
00:47:42 Log files: TestDropBox.log n/a
00:47:42 Log files: master.err empty
00:47:42 Log files: master.out 30.1 KB
00:47:42 Log files: Total size 0.06 MB
00:47:42
00:47:42
00:47:42 Environment:OMERO_HOME=(unset)
00:47:42 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:42 Environment:OMERO_NODE=(unset)
00:47:42 Environment:OMERO_MASTER=(unset)
00:47:42 Environment:OMERO_USERDIR=(unset)
00:47:42 Environment:OMERO_TMPDIR=(unset)
00:47:42 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:42 Environment:PYTHONPATH=(unset)
00:47:42 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:42 Environment:LD_LIBRARY_PATH=(unset)
00:47:42 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:42
00:47:42 OMERO SSL port:4064
00:47:42 OMERO TCP port:4063
00:47:42 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:42 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:42
00:47:42 JVM settings: Blitz-${index} -Xmx7200m
00:47:42 JVM settings: Indexer-${index} -Xmx4800m
00:47:42 JVM settings: PixelData-${index} -Xmx7200m
00:47:42 JVM settings: Repository-${index} -Xmx4800m
00:47:42
00:47:42 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 27 February 2026 7562063d824446dd22ce598a8391e40ad8e38ea8
00:47:42 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 27 February 2026 7562063d824446dd22ce598a8391e40ad8e38ea8
00:47:42 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 27 February 2026 7562063d824446dd22ce598a8391e40ad8e38ea8
00:47:42 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 27 February 2026 6bfe260b53c81acf1d2ec40c2782210eb16cb25f
00:47:42 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:42 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:42 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 5ddcd31f0feb6740827c2e202acb023075256534
00:47:42 + deactivate
00:47:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:42 + export PATH
00:47:42 + unset _OLD_VIRTUAL_PATH
00:47:42 + '[' -n '' ']'
00:47:42 + hash -r
00:47:42 + '[' -n '' ']'
00:47:42 + unset VIRTUAL_ENV
00:47:42 + unset VIRTUAL_ENV_PROMPT
00:47:42 + '[' '!' '' = nondestructive ']'
00:47:42 + unset -f deactivate
00:47:42 Finished: SUCCESS
