00:44:44 Started by upstream project "Trigger" build number 90
00:44:44 originally caused by:
00:44:44 Started by timer
00:44:44 Running as SYSTEM
00:44:44 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:44:44 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13198590205700047354.sh
00:44:44 + source /home/settings.env
00:44:44 ++ OMERO_DB_HOST=pg
00:44:44 ++ OMERO_DB_USER=postgres
00:44:44 ++ OMERO_DB_PASS=
00:44:44 ++ OMERO_ROOT_PASS=omero
00:44:44 ++ OMERO_DATA_DIR=/OMERO
00:44:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:44:44 + OMERO_DB_NAME=OMERO-server
00:44:44 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:44:44 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:44 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:44 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:44:44 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:44:44 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:44:44 ++ deactivate nondestructive
00:44:44 ++ '[' -n '' ']'
00:44:44 ++ '[' -n '' ']'
00:44:44 ++ hash -r
00:44:44 ++ '[' -n '' ']'
00:44:44 ++ unset VIRTUAL_ENV
00:44:44 ++ unset VIRTUAL_ENV_PROMPT
00:44:44 ++ '[' '!' nondestructive = nondestructive ']'
00:44:44 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:44:44 ++ export VIRTUAL_ENV
00:44:44 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:44 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:44 ++ export PATH
00:44:44 ++ '[' -n '' ']'
00:44:44 ++ '[' -z '' ']'
00:44:44 ++ _OLD_VIRTUAL_PS1=
00:44:44 ++ PS1='(.venv3) '
00:44:44 ++ export PS1
00:44:44 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:44:44 ++ export VIRTUAL_ENV_PROMPT
00:44:44 ++ hash -r
00:44:44 + omero admin stop
00:44:46 Waiting on shutdown. Use CTRL-C to exit
00:44:46 .+ sleep 5
00:45:01 + deactivate
00:45:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:01 + export PATH
00:45:01 + unset _OLD_VIRTUAL_PATH
00:45:01 + '[' -n '' ']'
00:45:01 + hash -r
00:45:01 + '[' -n '' ']'
00:45:01 + unset VIRTUAL_ENV
00:45:01 + unset VIRTUAL_ENV_PROMPT
00:45:01 + '[' '!' '' = nondestructive ']'
00:45:01 + unset -f deactivate
00:45:01 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:02 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:05 + '[' false = true ']'
00:45:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:05 Skipping PURGE_DATA:CleanDbAndRepo
00:45:05 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:07 Copied 1 artifact from "OMERO-build" build number 66
00:45:07 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 62
00:45:07 Copied 2 artifacts from "OMERO-build-build" build number 66
00:45:07 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 60
00:45:07 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10684366940874073879.sh
00:45:07 + source /home/settings.env
00:45:07 ++ OMERO_DB_HOST=pg
00:45:07 ++ OMERO_DB_USER=postgres
00:45:07 ++ OMERO_DB_PASS=
00:45:07 ++ OMERO_ROOT_PASS=omero
00:45:07 ++ OMERO_DATA_DIR=/OMERO
00:45:07 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:07 + OMERO_DB_NAME=OMERO-server
00:45:07 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:07 + mkdir -p /home/omero/omero-server-data
00:45:07 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:07 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:07 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:07 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:07 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:07 ++ ls OMERO.server-5.6.3-594-17ce874e89-ice36-b66.zip
00:45:07 + ZIP=OMERO.server-5.6.3-594-17ce874e89-ice36-b66.zip
00:45:07 + '[' '!' -z '' ']'
00:45:07 + DIST=OMERO.server-5.6.3-594-17ce874e89-ice36-b66
00:45:07 + unzip OMERO.server-5.6.3-594-17ce874e89-ice36-b66.zip
00:45:07 Archive: OMERO.server-5.6.3-594-17ce874e89-ice36-b66.zip
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/blitz/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/grid/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/profiles/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/error/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/grid/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/janelia/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/matplotlib/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/ncsa_paledit/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/seaborn/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/luts/wcif/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/analysis_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/annotation_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/export_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/figure_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/import_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/scripts/omero/util_scripts/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/server/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/share/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/share/licenses/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/misc/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__1/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__10/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__11/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__2/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__3/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__4/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__5/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__6/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__7/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__8/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3A__9/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3__4/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3__5/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3__6/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO3__7/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4.1__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4.2__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4.2__0/t/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4.3__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4.4__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO4__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.0__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.1__1/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.2__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.3__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4DEV__1/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4DEV__2/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4DEV__3/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/var/
00:45:07 creating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/var/tmp/
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/LICENSE.txt
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/backup.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/blitz/mail-senders.example
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/blitz/mail-server.example
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/build.properties
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/env.bat
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/env.sh
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/hibernate.properties
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/ice.config
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/logback-cli.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/logback-indexing-cli.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/logback-indexing.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/logback.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/mime.types
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/node1.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/node2.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/omero.properties
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/profiles/psql
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/rollover.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/Windows.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/error/maintainance.html
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/grid/README
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/grid/default.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/grid/templates.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/grid/windefault.xml
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/ice.config
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/internal.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/master.cfg
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/templates/robot.template
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/etc/testdropbox.config
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/history.rst
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/OMEZarrReader.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/accessors-smart.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/activation.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aggdesigner-algorithm.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aircompressor.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/antlr.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aopalliance.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/apiguardian-api.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/asm.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/avatica-core.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/avatica-metrics.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aws-java-sdk-core.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aws-java-sdk-kms.jar
00:45:07 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/aws-java-sdk-s3.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/base.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-anim.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-awt-util.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-bridge.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-codec.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-constants.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-css.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-dom.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-ext.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-gvt.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-i18n.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-parser.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-script.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-shared-resources.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-svg-dom.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-svggen.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-transcoder.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-util.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/batik-xml.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/btm.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/calcite-core.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/calcite-linq4j.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/cdm-core.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/checker-qual.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/commons-beanutils.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/commons-codec.jar
00:45:08 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/lib/client/commons-collections.jar
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00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/psql-header.sql
00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/schema.sql
00:45:10 inflating: OMERO.server-5.6.3-594-17ce874e89-ice36-b66/sql/psql/OMERO5.4__0/views.sql
00:45:10 + rm -f OMERO.server-5.6.3-594-17ce874e89-ice36-b66.zip
00:45:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-17ce874e89-ice36-b66 /home/omero/workspace/OMERO-server/OMERO.server
00:45:10 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:10 + awsSdkVersion=2.34.6
00:45:10 + jacksonVersion=2.20.0
00:45:10 + logbackVersion=1.3.14
00:45:10 + zarrJavaVersion=0.0.10
00:45:10 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:10 --2026-02-28 00:45:10-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:10 HTTP request sent, awaiting response... 200 OK
00:45:10 Length: 4083366 (3.9M) [application/java-archive]
00:45:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:10
00:45:10 0K .......... .......... .......... .......... .......... 1% 19.4M 0s
00:45:10 50K .......... .......... .......... .......... .......... 2% 3.70M 1s
00:45:10 100K .......... .......... .......... .......... .......... 3% 13.8M 0s
00:45:10 150K .......... .......... .......... .......... .......... 5% 5.23M 1s
00:45:10 200K .......... .......... .......... .......... .......... 6% 12.6M 0s
00:45:10 250K .......... .......... .......... .......... .......... 7% 17.5M 0s
00:45:10 300K .......... .......... .......... .......... .......... 8% 17.0M 0s
00:45:10 350K .......... .......... .......... .......... .......... 10% 17.7M 0s
00:45:10 400K .......... .......... .......... .......... .......... 11% 16.5M 0s
00:45:10 450K .......... .......... .......... .......... .......... 12% 21.5M 0s
00:45:10 500K .......... .......... .......... .......... .......... 13% 13.4M 0s
00:45:10 550K .......... .......... .......... .......... .......... 15% 17.6M 0s
00:45:10 600K .......... .......... .......... .......... .......... 16% 14.9M 0s
00:45:10 650K .......... .......... .......... .......... .......... 17% 30.6M 0s
00:45:10 700K .......... .......... .......... .......... .......... 18% 23.3M 0s
00:45:10 750K .......... .......... .......... .......... .......... 20% 21.8M 0s
00:45:10 800K .......... .......... .......... .......... .......... 21% 10.9M 0s
00:45:10 850K .......... .......... .......... .......... .......... 22% 15.5M 0s
00:45:10 900K .......... .......... .......... .......... .......... 23% 22.7M 0s
00:45:10 950K .......... .......... .......... .......... .......... 25% 31.5M 0s
00:45:10 1000K .......... .......... .......... .......... .......... 26% 19.0M 0s
00:45:10 1050K .......... .......... .......... .......... .......... 27% 12.0M 0s
00:45:10 1100K .......... .......... .......... .......... .......... 28% 15.4M 0s
00:45:10 1150K .......... .......... .......... .......... .......... 30% 20.7M 0s
00:45:10 1200K .......... .......... .......... .......... .......... 31% 15.5M 0s
00:45:10 1250K .......... .......... .......... .......... .......... 32% 47.7M 0s
00:45:10 1300K .......... .......... .......... .......... .......... 33% 12.4M 0s
00:45:10 1350K .......... .......... .......... .......... .......... 35% 15.6M 0s
00:45:10 1400K .......... .......... .......... .......... .......... 36% 20.2M 0s
00:45:10 1450K .......... .......... .......... .......... .......... 37% 24.5M 0s
00:45:10 1500K .......... .......... .......... .......... .......... 38% 15.1M 0s
00:45:10 1550K .......... .......... .......... .......... .......... 40% 23.0M 0s
00:45:10 1600K .......... .......... .......... .......... .......... 41% 18.5M 0s
00:45:10 1650K .......... .......... .......... .......... .......... 42% 13.3M 0s
00:45:10 1700K .......... .......... .......... .......... .......... 43% 26.1M 0s
00:45:10 1750K .......... .......... .......... .......... .......... 45% 11.7M 0s
00:45:10 1800K .......... .......... .......... .......... .......... 46% 23.3M 0s
00:45:10 1850K .......... .......... .......... .......... .......... 47% 15.9M 0s
00:45:10 1900K .......... .......... .......... .......... .......... 48% 20.9M 0s
00:45:10 1950K .......... .......... .......... .......... .......... 50% 24.5M 0s
00:45:10 2000K .......... .......... .......... .......... .......... 51% 15.4M 0s
00:45:10 2050K .......... .......... .......... .......... .......... 52% 21.9M 0s
00:45:10 2100K .......... .......... .......... .......... .......... 53% 22.0M 0s
00:45:10 2150K .......... .......... .......... .......... .......... 55% 12.2M 0s
00:45:10 2200K .......... .......... .......... .......... .......... 56% 26.1M 0s
00:45:10 2250K .......... .......... .......... .......... .......... 57% 14.9M 0s
00:45:10 2300K .......... .......... .......... .......... .......... 58% 21.6M 0s
00:45:10 2350K .......... .......... .......... .......... .......... 60% 21.8M 0s
00:45:10 2400K .......... .......... .......... .......... .......... 61% 15.6M 0s
00:45:10 2450K .......... .......... .......... .......... .......... 62% 28.3M 0s
00:45:10 2500K .......... .......... .......... .......... .......... 63% 14.1M 0s
00:45:10 2550K .......... .......... .......... .......... .......... 65% 16.5M 0s
00:45:10 2600K .......... .......... .......... .......... .......... 66% 21.6M 0s
00:45:10 2650K .......... .......... .......... .......... .......... 67% 14.7M 0s
00:45:10 2700K .......... .......... .......... .......... .......... 68% 12.4M 0s
00:45:10 2750K .......... .......... .......... .......... .......... 70% 26.5M 0s
00:45:10 2800K .......... .......... .......... .......... .......... 71% 21.2M 0s
00:45:10 2850K .......... .......... .......... .......... .......... 72% 21.9M 0s
00:45:10 2900K .......... .......... .......... .......... .......... 73% 15.2M 0s
00:45:10 2950K .......... .......... .......... .......... .......... 75% 12.3M 0s
00:45:10 3000K .......... .......... .......... .......... .......... 76% 24.1M 0s
00:45:10 3050K .......... .......... .......... .......... .......... 77% 22.8M 0s
00:45:10 3100K .......... .......... .......... .......... .......... 78% 21.3M 0s
00:45:10 3150K .......... .......... .......... .......... .......... 80% 15.1M 0s
00:45:10 3200K .......... .......... .......... .......... .......... 81% 22.6M 0s
00:45:10 3250K .......... .......... .......... .......... .......... 82% 12.2M 0s
00:45:10 3300K .......... .......... .......... .......... .......... 84% 25.7M 0s
00:45:10 3350K .......... .......... .......... .......... .......... 85% 16.1M 0s
00:45:10 3400K .......... .......... .......... .......... .......... 86% 15.4M 0s
00:45:10 3450K .......... .......... .......... .......... .......... 87% 27.5M 0s
00:45:10 3500K .......... .......... .......... .......... .......... 89% 11.2M 0s
00:45:10 3550K .......... .......... .......... .......... .......... 90% 19.9M 0s
00:45:10 3600K .......... .......... .......... .......... .......... 91% 28.8M 0s
00:45:10 3650K .......... .......... .......... .......... .......... 92% 12.2M 0s
00:45:10 3700K .......... .......... .......... .......... .......... 94% 33.7M 0s
00:45:10 3750K .......... .......... .......... .......... .......... 95% 12.1M 0s
00:45:10 3800K .......... .......... .......... .......... .......... 96% 20.5M 0s
00:45:10 3850K .......... .......... .......... .......... .......... 97% 26.4M 0s
00:45:10 3900K .......... .......... .......... .......... .......... 99% 12.2M 0s
00:45:10 3950K .......... .......... .......... ....... 100% 93.6M=0.2s
00:45:10
00:45:10 2026-02-28 00:45:10 (16.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:10
00:45:10 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:10 --2026-02-28 00:45:10-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:10 HTTP request sent, awaiting response... 200 OK
00:45:10 Length: 234962 (229K) [application/java-archive]
00:45:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:10
00:45:10 0K .......... .......... .......... .......... .......... 21% 18.0M 0s
00:45:10 50K .......... .......... .......... .......... .......... 43% 4.05M 0s
00:45:11 100K .......... .......... .......... .......... .......... 65% 13.5M 0s
00:45:11 150K .......... .......... .......... .......... .......... 87% 4.51M 0s
00:45:11 200K .......... .......... ......... 100% 15.1M=0.03s
00:45:11
00:45:11 2026-02-28 00:45:11 (7.20 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-28 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 192161 (188K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .......... .......... 26% 3.49M 0s
00:45:11 50K .......... .......... .......... .......... .......... 53% 7.64M 0s
00:45:11 100K .......... .......... .......... .......... .......... 79% 4.99M 0s
00:45:11 150K .......... .......... .......... ....... 100% 10.1M=0.03s
00:45:11
00:45:11 2026-02-28 00:45:11 (5.42 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-28 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 1037104 (1013K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .......... .......... 4% 17.4M 0s
00:45:11 50K .......... .......... .......... .......... .......... 9% 3.78M 0s
00:45:11 100K .......... .......... .......... .......... .......... 14% 14.9M 0s
00:45:11 150K .......... .......... .......... .......... .......... 19% 5.16M 0s
00:45:11 200K .......... .......... .......... .......... .......... 24% 17.4M 0s
00:45:11 250K .......... .......... .......... .......... .......... 29% 10.6M 0s
00:45:11 300K .......... .......... .......... .......... .......... 34% 17.7M 0s
00:45:11 350K .......... .......... .......... .......... .......... 39% 24.3M 0s
00:45:11 400K .......... .......... .......... .......... .......... 44% 26.3M 0s
00:45:11 450K .......... .......... .......... .......... .......... 49% 21.1M 0s
00:45:11 500K .......... .......... .......... .......... .......... 54% 12.8M 0s
00:45:11 550K .......... .......... .......... .......... .......... 59% 13.3M 0s
00:45:11 600K .......... .......... .......... .......... .......... 64% 27.0M 0s
00:45:11 650K .......... .......... .......... .......... .......... 69% 22.0M 0s
00:45:11 700K .......... .......... .......... .......... .......... 74% 16.6M 0s
00:45:11 750K .......... .......... .......... .......... .......... 78% 16.2M 0s
00:45:11 800K .......... .......... .......... .......... .......... 83% 12.3M 0s
00:45:11 850K .......... .......... .......... .......... .......... 88% 32.4M 0s
00:45:11 900K .......... .......... .......... .......... .......... 93% 19.8M 0s
00:45:11 950K .......... .......... .......... .......... .......... 98% 17.4M 0s
00:45:11 1000K .......... .. 100% 90.5M=0.07s
00:45:11
00:45:11 2026-02-28 00:45:11 (13.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-28 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 33040 (32K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .. 100% 21.5M=0.001s
00:45:11
00:45:11 2026-02-28 00:45:11 (21.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-28 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 13758 (13K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:12
00:45:12 0K .......... ... 100% 37.8M=0s
00:45:12
00:45:12 2026-02-28 00:45:12 (37.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-28 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 962220 (940K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:12
00:45:12 0K .......... .......... .......... .......... .......... 5% 20.6M 0s
00:45:12 50K .......... .......... .......... .......... .......... 10% 3.64M 0s
00:45:12 100K .......... .......... .......... .......... .......... 15% 17.6M 0s
00:45:12 150K .......... .......... .......... .......... .......... 21% 4.54M 0s
00:45:12 200K .......... .......... .......... .......... .......... 26% 16.4M 0s
00:45:12 250K .......... .......... .......... .......... .......... 31% 12.0M 0s
00:45:12 300K .......... .......... .......... .......... .......... 37% 19.4M 0s
00:45:12 350K .......... .......... .......... .......... .......... 42% 16.9M 0s
00:45:12 400K .......... .......... .......... .......... .......... 47% 23.3M 0s
00:45:12 450K .......... .......... .......... .......... .......... 53% 16.8M 0s
00:45:12 500K .......... .......... .......... .......... .......... 58% 15.2M 0s
00:45:12 550K .......... .......... .......... .......... .......... 63% 31.3M 0s
00:45:12 600K .......... .......... .......... .......... .......... 69% 13.5M 0s
00:45:12 650K .......... .......... .......... .......... .......... 74% 14.7M 0s
00:45:12 700K .......... .......... .......... .......... .......... 79% 17.1M 0s
00:45:12 750K .......... .......... .......... .......... .......... 85% 13.1M 0s
00:45:12 800K .......... .......... .......... .......... .......... 90% 152M 0s
00:45:12 850K .......... .......... .......... .......... .......... 95% 14.6M 0s
00:45:12 900K .......... .......... .......... ......... 100% 25.6M=0.07s
00:45:12
00:45:12 2026-02-28 00:45:12 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-28 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 30963 (30K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:12
00:45:12 0K .......... .......... .......... 100% 23.0M=0.001s
00:45:12
00:45:12 2026-02-28 00:45:12 (23.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-28 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 241618 (236K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 21% 19.9M 0s
00:45:13 50K .......... .......... .......... .......... .......... 42% 3.73M 0s
00:45:13 100K .......... .......... .......... .......... .......... 63% 16.7M 0s
00:45:13 150K .......... .......... .......... .......... .......... 84% 4.49M 0s
00:45:13 200K .......... .......... .......... ..... 100% 18.8M=0.03s
00:45:13
00:45:13 2026-02-28 00:45:13 (7.38 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-28 00:45:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 91685 (90K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 55% 16.7M 0s
00:45:13 50K .......... .......... .......... ......... 100% 3.22M=0.01s
00:45:13
00:45:13 2026-02-28 00:45:13 (5.86 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-28 00:45:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 66309 (65K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 77% 16.0M 0s
00:45:13 50K .......... .... 100% 15.5M=0.004s
00:45:13
00:45:13 2026-02-28 00:45:13 (15.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-28 00:45:13-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 593063 (579K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 8% 20.5M 0s
00:45:13 50K .......... .......... .......... .......... .......... 17% 3.71M 0s
00:45:13 100K .......... .......... .......... .......... .......... 25% 4.20M 0s
00:45:13 150K .......... .......... .......... .......... .......... 34% 14.8M 0s
00:45:13 200K .......... .......... .......... .......... .......... 43% 17.0M 0s
00:45:13 250K .......... .......... .......... .......... .......... 51% 17.3M 0s
00:45:13 300K .......... .......... .......... .......... .......... 60% 10.7M 0s
00:45:13 350K .......... .......... .......... .......... .......... 69% 19.7M 0s
00:45:13 400K .......... .......... .......... .......... .......... 77% 25.9M 0s
00:45:13 450K .......... .......... .......... .......... .......... 86% 17.9M 0s
00:45:13 500K .......... .......... .......... .......... .......... 94% 21.1M 0s
00:45:13 550K .......... .......... ......... 100% 19.3M=0.05s
00:45:13
00:45:13 2026-02-28 00:45:13 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-28 00:45:13-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:14 HTTP request sent, awaiting response... 200 OK
00:45:14 Length: 1688471 (1.6M) [application/java-archive]
00:45:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:14
00:45:14 0K .......... .......... .......... .......... .......... 3% 5.48M 0s
00:45:14 50K .......... .......... .......... .......... .......... 6% 1.04M 1s
00:45:14 100K .......... .......... .......... .......... .......... 9% 2.93M 1s
00:45:14 150K .......... .......... .......... .......... .......... 12% 1.06M 1s
00:45:14 200K .......... .......... .......... .......... .......... 15% 2.96M 1s
00:45:14 250K .......... .......... .......... .......... .......... 18% 1.48M 1s
00:45:14 300K .......... .......... .......... .......... .......... 21% 10.1M 1s
00:45:14 350K .......... .......... .......... .......... .......... 24% 4.66M 1s
00:45:14 400K .......... .......... .......... .......... .......... 27% 2.01M 1s
00:45:14 450K .......... .......... .......... .......... .......... 30% 4.12M 1s
00:45:14 500K .......... .......... .......... .......... .......... 33% 4.93M 0s
00:45:14 550K .......... .......... .......... .......... .......... 36% 13.2M 0s
00:45:14 600K .......... .......... .......... .......... .......... 39% 1.86M 0s
00:45:14 650K .......... .......... .......... .......... .......... 42% 5.70M 0s
00:45:14 700K .......... .......... .......... .......... .......... 45% 19.7M 0s
00:45:14 750K .......... .......... .......... .......... .......... 48% 8.48M 0s
00:45:14 800K .......... .......... .......... .......... .......... 51% 17.9M 0s
00:45:14 850K .......... .......... .......... .......... .......... 54% 2.16M 0s
00:45:14 900K .......... .......... .......... .......... .......... 57% 6.07M 0s
00:45:14 950K .......... .......... .......... .......... .......... 60% 79.6M 0s
00:45:14 1000K .......... .......... .......... .......... .......... 63% 7.67M 0s
00:45:14 1050K .......... .......... .......... .......... .......... 66% 27.6M 0s
00:45:14 1100K .......... .......... .......... .......... .......... 69% 8.42M 0s
00:45:14 1150K .......... .......... .......... .......... .......... 72% 1.85M 0s
00:45:14 1200K .......... .......... .......... .......... .......... 75% 11.0M 0s
00:45:14 1250K .......... .......... .......... .......... .......... 78% 9.60M 0s
00:45:14 1300K .......... .......... .......... .......... .......... 81% 11.5M 0s
00:45:14 1350K .......... .......... .......... .......... .......... 84% 4.16M 0s
00:45:14 1400K .......... .......... .......... .......... .......... 87% 1.87M 0s
00:45:14 1450K .......... .......... .......... .......... .......... 90% 13.1M 0s
00:45:14 1500K .......... .......... .......... .......... .......... 94% 14.3M 0s
00:45:14 1550K .......... .......... .......... .......... .......... 97% 36.1M 0s
00:45:14 1600K .......... .......... .......... .......... ........ 100% 4.89M=0.4s
00:45:14
00:45:14 2026-02-28 00:45:14 (3.83 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:14
00:45:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:14 --2026-02-28 00:45:14-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 36400 (36K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:15
00:45:15 0K .......... .......... .......... ..... 100% 17.5M=0.002s
00:45:15
00:45:15 2026-02-28 00:45:15 (17.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-28 00:45:15-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 79195 (77K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:15
00:45:15 0K .......... .......... .......... .......... .......... 64% 18.8M 0s
00:45:15 50K .......... .......... ....... 100% 2.33M=0.01s
00:45:15
00:45:15 2026-02-28 00:45:15 (5.38 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-28 00:45:15-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 277829 (271K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:15
00:45:15 0K .......... .......... .......... .......... .......... 18% 18.4M 0s
00:45:15 50K .......... .......... .......... .......... .......... 36% 3.66M 0s
00:45:15 100K .......... .......... .......... .......... .......... 55% 16.9M 0s
00:45:15 150K .......... .......... .......... .......... .......... 73% 4.53M 0s
00:45:15 200K .......... .......... .......... .......... .......... 92% 16.9M 0s
00:45:15 250K .......... .......... . 100% 11.7M=0.03s
00:45:15
00:45:15 2026-02-28 00:45:15 (7.72 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-28 00:45:15-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 579673 (566K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 8% 19.6M 0s
00:45:16 50K .......... .......... .......... .......... .......... 17% 3.74M 0s
00:45:16 100K .......... .......... .......... .......... .......... 26% 4.30M 0s
00:45:16 150K .......... .......... .......... .......... .......... 35% 17.5M 0s
00:45:16 200K .......... .......... .......... .......... .......... 44% 17.8M 0s
00:45:16 250K .......... .......... .......... .......... .......... 52% 10.7M 0s
00:45:16 300K .......... .......... .......... .......... .......... 61% 13.8M 0s
00:45:16 350K .......... .......... .......... .......... .......... 70% 32.7M 0s
00:45:16 400K .......... .......... .......... .......... .......... 79% 20.4M 0s
00:45:16 450K .......... .......... .......... .......... .......... 88% 28.6M 0s
00:45:16 500K .......... .......... .......... .......... .......... 97% 13.7M 0s
00:45:16 550K .......... ...... 100% 16.6M=0.05s
00:45:16
00:45:16 2026-02-28 00:45:16 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-28 00:45:16-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 175836 (172K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 29% 18.5M 0s
00:45:16 50K .......... .......... .......... .......... .......... 58% 3.74M 0s
00:45:16 100K .......... .......... .......... .......... .......... 87% 17.1M 0s
00:45:16 150K .......... .......... . 100% 2.32M=0.03s
00:45:16
00:45:16 2026-02-28 00:45:16 (6.06 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-28 00:45:16-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 889211 (868K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 5% 16.7M 0s
00:45:16 50K .......... .......... .......... .......... .......... 11% 3.81M 0s
00:45:16 100K .......... .......... .......... .......... .......... 17% 16.5M 0s
00:45:16 150K .......... .......... .......... .......... .......... 23% 4.53M 0s
00:45:16 200K .......... .......... .......... .......... .......... 28% 17.4M 0s
00:45:16 250K .......... .......... .......... .......... .......... 34% 12.8M 0s
00:45:16 300K .......... .......... .......... .......... .......... 40% 16.8M 0s
00:45:16 350K .......... .......... .......... .......... .......... 46% 14.9M 0s
00:45:16 400K .......... .......... .......... .......... .......... 51% 23.5M 0s
00:45:16 450K .......... .......... .......... .......... .......... 57% 25.1M 0s
00:45:16 500K .......... .......... .......... .......... .......... 63% 19.9M 0s
00:45:16 550K .......... .......... .......... .......... .......... 69% 15.8M 0s
00:45:16 600K .......... .......... .......... .......... .......... 74% 12.7M 0s
00:45:16 650K .......... .......... .......... .......... .......... 80% 20.3M 0s
00:45:16 700K .......... .......... .......... .......... .......... 86% 24.8M 0s
00:45:16 750K .......... .......... .......... .......... .......... 92% 15.3M 0s
00:45:16 800K .......... .......... .......... .......... .......... 97% 22.9M 0s
00:45:16 850K .......... ........ 100% 7.60M=0.07s
00:45:16
00:45:16 2026-02-28 00:45:16 (12.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-28 00:45:16-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 736051 (719K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 6% 21.6M 0s
00:45:16 50K .......... .......... .......... .......... .......... 13% 3.64M 0s
00:45:16 100K .......... .......... .......... .......... .......... 20% 4.33M 0s
00:45:16 150K .......... .......... .......... .......... .......... 27% 20.3M 0s
00:45:16 200K .......... .......... .......... .......... .......... 34% 14.0M 0s
00:45:16 250K .......... .......... .......... .......... .......... 41% 13.4M 0s
00:45:16 300K .......... .......... .......... .......... .......... 48% 13.7M 0s
00:45:16 350K .......... .......... .......... .......... .......... 55% 22.2M 0s
00:45:16 400K .......... .......... .......... .......... .......... 62% 24.7M 0s
00:45:16 450K .......... .......... .......... .......... .......... 69% 21.5M 0s
00:45:16 500K .......... .......... .......... .......... .......... 76% 14.0M 0s
00:45:16 550K .......... .......... .......... .......... .......... 83% 18.3M 0s
00:45:17 600K .......... .......... .......... .......... .......... 90% 9.54M 0s
00:45:17 650K .......... .......... .......... .......... .......... 97% 56.5M 0s
00:45:17 700K .......... ........ 100% 364M=0.06s
00:45:17
00:45:17 2026-02-28 00:45:17 (12.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:17
00:45:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:17 --2026-02-28 00:45:17-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:17 HTTP request sent, awaiting response... 200 OK
00:45:17 Length: 331034 (323K) [application/java-archive]
00:45:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:17
00:45:17 0K .......... .......... .......... .......... .......... 15% 19.9M 0s
00:45:17 50K .......... .......... .......... .......... .......... 30% 3.75M 0s
00:45:17 100K .......... .......... .......... .......... .......... 46% 17.7M 0s
00:45:17 150K .......... .......... .......... .......... .......... 61% 4.79M 0s
00:45:17 200K .......... .......... .......... .......... .......... 77% 12.7M 0s
00:45:17 250K .......... .......... .......... .......... .......... 92% 17.1M 0s
00:45:17 300K .......... .......... ... 100% 23.2M=0.04s
00:45:17
00:45:17 2026-02-28 00:45:17 (8.75 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:17
00:45:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:17 --2026-02-28 00:45:17-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:17 HTTP request sent, awaiting response... 200 OK
00:45:17 Length: 6749842 (6.4M) [application/java-archive]
00:45:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:17
00:45:17 0K .......... .......... .......... .......... .......... 0% 17.7M 0s
00:45:17 50K .......... .......... .......... .......... .......... 1% 3.78M 1s
00:45:17 100K .......... .......... .......... .......... .......... 2% 26.7M 1s
00:45:17 150K .......... .......... .......... .......... .......... 3% 4.44M 1s
00:45:17 200K .......... .......... .......... .......... .......... 3% 11.5M 1s
00:45:17 250K .......... .......... .......... .......... .......... 4% 17.3M 1s
00:45:17 300K .......... .......... .......... .......... .......... 5% 17.8M 1s
00:45:17 350K .......... .......... .......... .......... .......... 6% 15.8M 1s
00:45:17 400K .......... .......... .......... .......... .......... 6% 23.7M 1s
00:45:17 450K .......... .......... .......... .......... .......... 7% 12.6M 1s
00:45:17 500K .......... .......... .......... .......... .......... 8% 17.7M 1s
00:45:17 550K .......... .......... .......... .......... .......... 9% 13.7M 1s
00:45:17 600K .......... .......... .......... .......... .......... 9% 32.5M 1s
00:45:17 650K .......... .......... .......... .......... .......... 10% 26.2M 0s
00:45:17 700K .......... .......... .......... .......... .......... 11% 12.2M 0s
00:45:17 750K .......... .......... .......... .......... .......... 12% 10.9M 0s
00:45:17 800K .......... .......... .......... .......... .......... 12% 110M 0s
00:45:17 850K .......... .......... .......... .......... .......... 13% 14.5M 0s
00:45:17 900K .......... .......... .......... .......... .......... 14% 35.7M 0s
00:45:17 950K .......... .......... .......... .......... .......... 15% 8.82M 0s
00:45:17 1000K .......... .......... .......... .......... .......... 15% 9.00M 0s
00:45:17 1050K .......... .......... .......... .......... .......... 16% 154M 0s
00:45:17 1100K .......... .......... .......... .......... .......... 17% 18.5M 0s
00:45:17 1150K .......... .......... .......... .......... .......... 18% 229M 0s
00:45:17 1200K .......... .......... .......... .......... .......... 18% 16.1M 0s
00:45:17 1250K .......... .......... .......... .......... .......... 19% 16.0M 0s
00:45:17 1300K .......... .......... .......... .......... .......... 20% 8.63M 0s
00:45:17 1350K .......... .......... .......... .......... .......... 21% 27.1M 0s
00:45:17 1400K .......... .......... .......... .......... .......... 21% 19.5M 0s
00:45:17 1450K .......... .......... .......... .......... .......... 22% 19.5M 0s
00:45:17 1500K .......... .......... .......... .......... .......... 23% 16.8M 0s
00:45:17 1550K .......... .......... .......... .......... .......... 24% 11.9M 0s
00:45:17 1600K .......... .......... .......... .......... .......... 25% 11.0M 0s
00:45:17 1650K .......... .......... .......... .......... .......... 25% 23.7M 0s
00:45:17 1700K .......... .......... .......... .......... .......... 26% 17.4M 0s
00:45:17 1750K .......... .......... .......... .......... .......... 27% 16.7M 0s
00:45:17 1800K .......... .......... .......... .......... .......... 28% 17.1M 0s
00:45:17 1850K .......... .......... .......... .......... .......... 28% 11.8M 0s
00:45:17 1900K .......... .......... .......... .......... .......... 29% 27.7M 0s
00:45:17 1950K .......... .......... .......... .......... .......... 30% 17.8M 0s
00:45:17 2000K .......... .......... .......... .......... .......... 31% 22.3M 0s
00:45:17 2050K .......... .......... .......... .......... .......... 31% 30.9M 0s
00:45:17 2100K .......... .......... .......... .......... .......... 32% 11.5M 0s
00:45:17 2150K .......... .......... .......... .......... .......... 33% 17.2M 0s
00:45:17 2200K .......... .......... .......... .......... .......... 34% 16.5M 0s
00:45:17 2250K .......... .......... .......... .......... .......... 34% 23.6M 0s
00:45:17 2300K .......... .......... .......... .......... .......... 35% 31.8M 0s
00:45:17 2350K .......... .......... .......... .......... .......... 36% 11.3M 0s
00:45:17 2400K .......... .......... .......... .......... .......... 37% 23.4M 0s
00:45:17 2450K .......... .......... .......... .......... .......... 37% 24.4M 0s
00:45:17 2500K .......... .......... .......... .......... .......... 38% 12.2M 0s
00:45:17 2550K .......... .......... .......... .......... .......... 39% 41.8M 0s
00:45:17 2600K .......... .......... .......... .......... .......... 40% 11.2M 0s
00:45:17 2650K .......... .......... .......... .......... .......... 40% 22.6M 0s
00:45:17 2700K .......... .......... .......... .......... .......... 41% 24.2M 0s
00:45:17 2750K .......... .......... .......... .......... .......... 42% 12.0M 0s
00:45:17 2800K .......... .......... .......... .......... .......... 43% 38.6M 0s
00:45:17 2850K .......... .......... .......... .......... .......... 43% 20.5M 0s
00:45:17 2900K .......... .......... .......... .......... .......... 44% 12.5M 0s
00:45:17 2950K .......... .......... .......... .......... .......... 45% 22.7M 0s
00:45:17 3000K .......... .......... .......... .......... .......... 46% 17.7M 0s
00:45:17 3050K .......... .......... .......... .......... .......... 47% 18.4M 0s
00:45:17 3100K .......... .......... .......... .......... .......... 47% 22.5M 0s
00:45:17 3150K .......... .......... .......... .......... .......... 48% 12.0M 0s
00:45:17 3200K .......... .......... .......... .......... .......... 49% 25.2M 0s
00:45:17 3250K .......... .......... .......... .......... .......... 50% 17.0M 0s
00:45:17 3300K .......... .......... .......... .......... .......... 50% 18.5M 0s
00:45:17 3350K .......... .......... .......... .......... .......... 51% 37.3M 0s
00:45:17 3400K .......... .......... .......... .......... .......... 52% 10.2M 0s
00:45:17 3450K .......... .......... .......... .......... .......... 53% 25.3M 0s
00:45:17 3500K .......... .......... .......... .......... .......... 53% 15.4M 0s
00:45:17 3550K .......... .......... .......... .......... .......... 54% 20.5M 0s
00:45:17 3600K .......... .......... .......... .......... .......... 55% 33.4M 0s
00:45:17 3650K .......... .......... .......... .......... .......... 56% 10.3M 0s
00:45:17 3700K .......... .......... .......... .......... .......... 56% 23.3M 0s
00:45:17 3750K .......... .......... .......... .......... .......... 57% 16.6M 0s
00:45:17 3800K .......... .......... .......... .......... .......... 58% 20.6M 0s
00:45:17 3850K .......... .......... .......... .......... .......... 59% 23.0M 0s
00:45:17 3900K .......... .......... .......... .......... .......... 59% 11.8M 0s
00:45:17 3950K .......... .......... .......... .......... .......... 60% 24.2M 0s
00:45:17 4000K .......... .......... .......... .......... .......... 61% 16.2M 0s
00:45:17 4050K .......... .......... .......... .......... .......... 62% 20.8M 0s
00:45:17 4100K .......... .......... .......... .......... .......... 62% 22.6M 0s
00:45:17 4150K .......... .......... .......... .......... .......... 63% 11.8M 0s
00:45:17 4200K .......... .......... .......... .......... .......... 64% 24.1M 0s
00:45:17 4250K .......... .......... .......... .......... .......... 65% 16.7M 0s
00:45:17 4300K .......... .......... .......... .......... .......... 65% 19.8M 0s
00:45:17 4350K .......... .......... .......... .......... .......... 66% 21.3M 0s
00:45:17 4400K .......... .......... .......... .......... .......... 67% 12.5M 0s
00:45:17 4450K .......... .......... .......... .......... .......... 68% 22.2M 0s
00:45:17 4500K .......... .......... .......... .......... .......... 69% 17.6M 0s
00:45:17 4550K .......... .......... .......... .......... .......... 69% 20.2M 0s
00:45:17 4600K .......... .......... .......... .......... .......... 70% 152M 0s
00:45:17 4650K .......... .......... .......... .......... .......... 71% 7.94M 0s
00:45:17 4700K .......... .......... .......... .......... .......... 72% 25.3M 0s
00:45:17 4750K .......... .......... .......... .......... .......... 72% 17.0M 0s
00:45:17 4800K .......... .......... .......... .......... .......... 73% 20.1M 0s
00:45:17 4850K .......... .......... .......... .......... .......... 74% 24.7M 0s
00:45:17 4900K .......... .......... .......... .......... .......... 75% 13.7M 0s
00:45:17 4950K .......... .......... .......... .......... .......... 75% 16.6M 0s
00:45:17 5000K .......... .......... .......... .......... .......... 76% 29.8M 0s
00:45:17 5050K .......... .......... .......... .......... .......... 77% 13.3M 0s
00:45:17 5100K .......... .......... .......... .......... .......... 78% 184M 0s
00:45:17 5150K .......... .......... .......... .......... .......... 78% 9.46M 0s
00:45:17 5200K .......... .......... .......... .......... .......... 79% 30.4M 0s
00:45:17 5250K .......... .......... .......... .......... .......... 80% 16.1M 0s
00:45:17 5300K .......... .......... .......... .......... .......... 81% 20.2M 0s
00:45:17 5350K .......... .......... .......... .......... .......... 81% 19.7M 0s
00:45:17 5400K .......... .......... .......... .......... .......... 82% 11.5M 0s
00:45:17 5450K .......... .......... .......... .......... .......... 83% 35.0M 0s
00:45:17 5500K .......... .......... .......... .......... .......... 84% 11.4M 0s
00:45:17 5550K .......... .......... .......... .......... .......... 84% 37.6M 0s
00:45:17 5600K .......... .......... .......... .......... .......... 85% 19.7M 0s
00:45:17 5650K .......... .......... .......... .......... .......... 86% 11.5M 0s
00:45:17 5700K .......... .......... .......... .......... .......... 87% 36.5M 0s
00:45:17 5750K .......... .......... .......... .......... .......... 87% 28.2M 0s
00:45:17 5800K .......... .......... .......... .......... .......... 88% 12.7M 0s
00:45:17 5850K .......... .......... .......... .......... .......... 89% 36.6M 0s
00:45:17 5900K .......... .......... .......... .......... .......... 90% 8.84M 0s
00:45:17 5950K .......... .......... .......... .......... .......... 91% 38.7M 0s
00:45:17 6000K .......... .......... .......... .......... .......... 91% 28.1M 0s
00:45:17 6050K .......... .......... .......... .......... .......... 92% 13.3M 0s
00:45:17 6100K .......... .......... .......... .......... .......... 93% 35.1M 0s
00:45:17 6150K .......... .......... .......... .......... .......... 94% 12.0M 0s
00:45:17 6200K .......... .......... .......... .......... .......... 94% 18.5M 0s
00:45:17 6250K .......... .......... .......... .......... .......... 95% 11.9M 0s
00:45:17 6300K .......... .......... .......... .......... .......... 96% 31.8M 0s
00:45:17 6350K .......... .......... .......... .......... .......... 97% 36.4M 0s
00:45:17 6400K .......... .......... .......... .......... .......... 97% 12.1M 0s
00:45:17 6450K .......... .......... .......... .......... .......... 98% 21.3M 0s
00:45:17 6500K .......... .......... .......... .......... .......... 99% 9.97M 0s
00:45:17 6550K .......... .......... .......... .......... . 100% 39.6M=0.4s
00:45:17
00:45:17 2026-02-28 00:45:17 (16.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:17
00:45:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:17 --2026-02-28 00:45:17-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:18 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:18 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:18 HTTP request sent, awaiting response... 200 OK
00:45:18 Length: 1732435 (1.7M) [application/java-archive]
00:45:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:18
00:45:18 0K .......... .......... .......... .......... .......... 2% 19.0M 0s
00:45:18 50K .......... .......... .......... .......... .......... 5% 3.66M 0s
00:45:18 100K .......... .......... .......... .......... .......... 8% 4.33M 0s
00:45:18 150K .......... .......... .......... .......... .......... 11% 21.6M 0s
00:45:18 200K .......... .......... .......... .......... .......... 14% 12.9M 0s
00:45:18 250K .......... .......... .......... .......... .......... 17% 17.1M 0s
00:45:18 300K .......... .......... .......... .......... .......... 20% 17.6M 0s
00:45:18 350K .......... .......... .......... .......... .......... 23% 14.2M 0s
00:45:18 400K .......... .......... .......... .......... .......... 26% 21.5M 0s
00:45:18 450K .......... .......... .......... .......... .......... 29% 23.1M 0s
00:45:18 500K .......... .......... .......... .......... .......... 32% 17.6M 0s
00:45:18 550K .......... .......... .......... .......... .......... 35% 13.1M 0s
00:45:18 600K .......... .......... .......... .......... .......... 38% 18.4M 0s
00:45:18 650K .......... .......... .......... .......... .......... 41% 14.7M 0s
00:45:18 700K .......... .......... .......... .......... .......... 44% 25.3M 0s
00:45:18 750K .......... .......... .......... .......... .......... 47% 24.9M 0s
00:45:18 800K .......... .......... .......... .......... .......... 50% 13.5M 0s
00:45:18 850K .......... .......... .......... .......... .......... 53% 12.3M 0s
00:45:18 900K .......... .......... .......... .......... .......... 56% 21.3M 0s
00:45:18 950K .......... .......... .......... .......... .......... 59% 29.2M 0s
00:45:18 1000K .......... .......... .......... .......... .......... 62% 13.6M 0s
00:45:18 1050K .......... .......... .......... .......... .......... 65% 23.0M 0s
00:45:18 1100K .......... .......... .......... .......... .......... 67% 16.4M 0s
00:45:18 1150K .......... .......... .......... .......... .......... 70% 46.2M 0s
00:45:18 1200K .......... .......... .......... .......... .......... 73% 20.2M 0s
00:45:18 1250K .......... .......... .......... .......... .......... 76% 9.88M 0s
00:45:18 1300K .......... .......... .......... .......... .......... 79% 22.4M 0s
00:45:18 1350K .......... .......... .......... .......... .......... 82% 11.7M 0s
00:45:18 1400K .......... .......... .......... .......... .......... 85% 18.5M 0s
00:45:18 1450K .......... .......... .......... .......... .......... 88% 24.1M 0s
00:45:18 1500K .......... .......... .......... .......... .......... 91% 17.4M 0s
00:45:18 1550K .......... .......... .......... .......... .......... 94% 17.9M 0s
00:45:18 1600K .......... .......... .......... .......... .......... 97% 20.3M 0s
00:45:18 1650K .......... .......... .......... .......... . 100% 15.8M=0.1s
00:45:18
00:45:18 2026-02-28 00:45:18 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:18
00:45:18 + for x in *.jar
00:45:18 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:18 ++ deactivate nondestructive
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ hash -r
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ unset VIRTUAL_ENV
00:45:18 ++ unset VIRTUAL_ENV_PROMPT
00:45:18 ++ '[' '!' nondestructive = nondestructive ']'
00:45:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:18 ++ export VIRTUAL_ENV
00:45:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:18 ++ export PATH
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ '[' -z '' ']'
00:45:18 ++ _OLD_VIRTUAL_PS1=
00:45:18 ++ PS1='(.venv3) '
00:45:18 ++ export PS1
00:45:18 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:18 ++ export VIRTUAL_ENV_PROMPT
00:45:18 ++ hash -r
00:45:18 + pip install -U pip
00:45:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:18 Collecting pip
00:45:18 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:18 Installing collected packages: pip
00:45:18 Attempting uninstall: pip
00:45:18 Found existing installation: pip 22.3.1
00:45:19 Uninstalling pip-22.3.1:
00:45:19 Successfully uninstalled pip-22.3.1
00:45:19 Successfully installed pip-26.0.1
00:45:19 WARNING: There was an error checking the latest version of pip.
00:45:19 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:20 Collecting zeroc-ice==3.6.5
00:45:20 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:22 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.7 MB/s 0:00:02
00:45:23 Installing collected packages: zeroc-ice
00:45:23 Successfully installed zeroc-ice-3.6.5
00:45:23 + pip install markdown
00:45:24 Collecting markdown
00:45:24 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:24 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:24 Installing collected packages: markdown
00:45:24 Successfully installed markdown-3.10.2
00:45:24 + pip install reportlab
00:45:24 Collecting reportlab
00:45:24 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:25 Collecting pillow>=9.0.0 (from reportlab)
00:45:25 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:25 Collecting charset-normalizer (from reportlab)
00:45:25 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:25 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:25 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:25 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:25 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:26
00:45:26 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:26 + pip install omego
00:45:26 Collecting omego
00:45:26 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:45:26 Collecting future (from omego)
00:45:26 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:26 Collecting yaclifw>=0.1.1 (from omego)
00:45:26 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:26 Collecting six (from yaclifw>=0.1.1->omego)
00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:26 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:45:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:26 Installing collected packages: six, future, yaclifw, omego
00:45:27
00:45:27 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:45:27 + pip install tables
00:45:27 Collecting tables
00:45:27 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:45:27 Collecting numpy>=1.20.0 (from tables)
00:45:27 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:27 Collecting numexpr>=2.6.2 (from tables)
00:45:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:28 Collecting packaging (from tables)
00:45:28 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:28 Collecting py-cpuinfo (from tables)
00:45:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:28 Collecting blosc2>=2.3.0 (from tables)
00:45:28 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:45:28 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:28 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:28 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:28 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:28 Collecting requests (from blosc2>=2.3.0->tables)
00:45:28 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:28 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:28 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:28 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:28 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:28 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:28 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:45:28 Using cached tables-3.11.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:45:28 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:45:28 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:28 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:28 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:28 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:28 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:28 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:28 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:28 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:28 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:45:28 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:32
00:45:32 Successfully installed blosc2-4.0.0 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.0 urllib3-2.6.3
00:45:32 + pip install jinja2
00:45:33 Collecting jinja2
00:45:33 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:33 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:33 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:33 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:33 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:33 Installing collected packages: MarkupSafe, jinja2
00:45:33
00:45:33 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:33 + pip install omero-py
00:45:34 Collecting omero-py
00:45:34 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:45:34 Collecting appdirs (from omero-py)
00:45:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:45:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:45:34 Collecting PyYAML (from omero-py)
00:45:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:34 Collecting portalocker (from omero-py)
00:45:34 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:34 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:45:34 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:45:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:34 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:34 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:36
00:45:36 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:45:36 + pip install pyarrow
00:45:36 Collecting pyarrow
00:45:36 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:45:36 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:45:36 Installing collected packages: pyarrow
00:45:38 Successfully installed pyarrow-23.0.1
00:45:38 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:38 Collecting omero-metadata
00:45:38 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ez_78xfp/omero-metadata_a0920691947c4be099a6369950076d0f
00:45:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ez_78xfp/omero-metadata_a0920691947c4be099a6369950076d0f
00:45:39 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit cb187938ace942ebcb944a1c333aa01fdebb1115
00:45:39 Installing build dependencies: started
00:45:40 Installing build dependencies: finished with status 'done'
00:45:40 Getting requirements to build wheel: started
00:45:40 Getting requirements to build wheel: finished with status 'done'
00:45:40 Preparing metadata (pyproject.toml): started
00:45:40 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:45:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:45:40 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:45:41 Collecting pandas (from omero-metadata)
00:45:41 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:45:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:45:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:45:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:45:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:45:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:45:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:45:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:45:41 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:45:41 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:45:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:45:41 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:45:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:45:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:45:41 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:45:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:45:41 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:45:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:45:41 Building wheels for collected packages: omero-metadata
00:45:41 Building wheel for omero-metadata (pyproject.toml): started
00:45:41 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:45:41 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=b9c2c606314e90686b159e79c67623ebdb1b2da0e9b86aa6859e7ac4880bd313
00:45:41 Stored in directory: /tmp/pip-ephem-wheel-cache-e_y1of2e/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:45:41 Successfully built omero-metadata
00:45:41 Installing collected packages: python-dateutil, pandas, omero-metadata
00:45:45
00:45:45 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:45:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:45:46 Collecting omero-cli-render
00:45:46 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ubfvyda2/omero-cli-render_34dc024a4b1947ff8a7bda7ea2e5bd80
00:45:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ubfvyda2/omero-cli-render_34dc024a4b1947ff8a7bda7ea2e5bd80
00:45:47 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:47 Switched to a new branch 'merge_ci'
00:45:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:47 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 88585de91e38af0fd760bd67f41160dff34ab13d
00:45:47 Installing build dependencies: started
00:45:48 Installing build dependencies: finished with status 'done'
00:45:48 Getting requirements to build wheel: started
00:45:48 Getting requirements to build wheel: finished with status 'done'
00:45:48 Preparing metadata (pyproject.toml): started
00:45:48 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:45:48 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:45:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:45:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:45:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:45:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:45:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:45:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:45:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:45:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:45:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:45:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:45:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:45:48 Building wheels for collected packages: omero-cli-render
00:45:48 Building wheel for omero-cli-render (pyproject.toml): started
00:45:49 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:45:49 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=a1e887ca576ff93d511e1641f04fe2a40cb9ae0a26deec3aa6052d3ab1570d1a
00:45:49 Stored in directory: /tmp/pip-ephem-wheel-cache-2reik7dp/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:45:49 Successfully built omero-cli-render
00:45:49 Installing collected packages: omero-cli-render
00:45:49 Successfully installed omero-cli-render-0.8.2.dev0
00:45:49 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:45:49 Collecting omero-cli-duplicate
00:45:49 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-svilo5ep/omero-cli-duplicate_1c3f906babb44826be85a343d0b22174
00:45:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-svilo5ep/omero-cli-duplicate_1c3f906babb44826be85a343d0b22174
00:45:50 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:51 Switched to a new branch 'merge_ci'
00:45:51 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:51 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 305892a3b0f076769056fcecfc6398b3cb3536a1
00:45:51 Installing build dependencies: started
00:45:51 Installing build dependencies: finished with status 'done'
00:45:51 Getting requirements to build wheel: started
00:45:52 Getting requirements to build wheel: finished with status 'done'
00:45:52 Preparing metadata (pyproject.toml): started
00:45:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:52 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:45:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:45:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:45:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:45:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:45:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:45:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:45:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:45:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:45:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:45:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:45:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:45:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:45:52 Building wheels for collected packages: omero-cli-duplicate
00:45:52 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:45:52 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:45:52 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=f3c319c576c32cfb248a72b5c8b42265347cb7656dc067b67f294fec973232b1
00:45:52 Stored in directory: /tmp/pip-ephem-wheel-cache-3_rm17fb/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:45:52 Successfully built omero-cli-duplicate
00:45:52 Installing collected packages: omero-cli-duplicate
00:45:52 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:45:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:45:53 Collecting omero-cli-zarr
00:45:53 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-tlwjmd9k/omero-cli-zarr_f44e1419edf24a0cb8fab469a65d0e2a
00:45:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-tlwjmd9k/omero-cli-zarr_f44e1419edf24a0cb8fab469a65d0e2a
00:45:53 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:54 Switched to a new branch 'merge_ci'
00:45:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:54 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 326de93ab479b276a920ba60cc417c2a4bb9ad2b
00:45:54 Installing build dependencies: started
00:45:54 Installing build dependencies: finished with status 'done'
00:45:54 Getting requirements to build wheel: started
00:45:55 Getting requirements to build wheel: finished with status 'done'
00:45:55 Installing backend dependencies: started
00:45:58 Installing backend dependencies: finished with status 'done'
00:45:58 Preparing metadata (pyproject.toml): started
00:45:58 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:45:59 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:45:59 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:45:59 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.2)
00:45:59 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:45:59 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:45:59 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:45:59 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:45:59 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:45:59 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:45:59 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:45:59 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:45:59 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:45:59 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:45:59 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:45:59 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:45:59 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:45:59 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:00 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:46:00 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:46:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:00 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:00 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached aiobotocore-3.2.0-py3-none-any.whl.metadata (26 kB)
00:46:00 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:00 Collecting botocore<1.42.56,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached botocore-1.42.55-py3-none-any.whl.metadata (5.9 kB)
00:46:00 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:46:00 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:00 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:00 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:01 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:46:01 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:01 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:01 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:01 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:01 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:01 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
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00:46:01 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:01 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:01 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:01 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:02 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:46:02 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:02 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.4)
00:46:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:46:02 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:46:02 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:46:02 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:02 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:02 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:46:02 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:02 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:02 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:46:02 Using cached aiobotocore-3.2.0-py3-none-any.whl (87 kB)
00:46:02 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:02 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:02 Using cached botocore-1.42.55-py3-none-any.whl (14.6 MB)
00:46:02 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:02 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:02 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:46:02 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:02 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:02 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:02 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:02 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:02 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:02 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:02 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:02 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:02 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:02 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:46:02 Using cached tifffile-2026.2.24-py3-none-any.whl (243 kB)
00:46:02 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:02 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:02 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:02 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:02 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:02 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:02 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:02 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:02 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:46:02 Building wheels for collected packages: omero-cli-zarr
00:46:02 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:02 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:02 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev160+g326de93-py3-none-any.whl size=38170 sha256=be44c2680aac105c2d16b35028fa24b733182ce77615062614517b30be4f3652
00:46:02 Stored in directory: /tmp/pip-ephem-wheel-cache-k_iop83k/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:02 Successfully built omero-cli-zarr
00:46:03 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:15
00:46:15 Successfully installed aiobotocore-3.2.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.55 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev160+g326de93 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.2.24 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:15 + pip install omero-certificates
00:46:16 Collecting omero-certificates
00:46:16 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:16 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:46:16 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:16 Installing collected packages: omero-certificates
00:46:16 Successfully installed omero-certificates-0.4.0
00:46:16 + for x in *.tar.gz
00:46:16 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:16 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:16 Installing build dependencies: started
00:46:17 Installing build dependencies: finished with status 'done'
00:46:17 Getting requirements to build wheel: started
00:46:17 Getting requirements to build wheel: finished with status 'done'
00:46:17 Preparing metadata (pyproject.toml): started
00:46:18 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:18 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:18 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:46:18 Building wheels for collected packages: omero-dropbox
00:46:18 Building wheel for omero-dropbox (pyproject.toml): started
00:46:18 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:18 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=bd1ac22b63a2326c1140b065b85cc6d3806157e4124ad01df534c564c846bbb5
00:46:18 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:18 Successfully built omero-dropbox
00:46:18 Installing collected packages: omero-dropbox
00:46:18 Successfully installed omero-dropbox-5.7.1.dev0
00:46:18 + for x in *.tar.gz
00:46:18 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:18 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:18 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:20 Getting requirements to build wheel: finished with status 'done'
00:46:20 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Building wheels for collected packages: omero_marshal
00:46:20 Building wheel for omero_marshal (pyproject.toml): started
00:46:20 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:20 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=5f1336e967be252bb0c676efb6929b6c287c142ac959fd4b80efbc6e9205b51f
00:46:20 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:20 Successfully built omero_marshal
00:46:20 Installing collected packages: omero_marshal
00:46:20 Successfully installed omero_marshal-0.9.2.dev0
00:46:20 + for x in *.tar.gz
00:46:20 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:21 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:21 Installing build dependencies: started
00:46:22 Installing build dependencies: finished with status 'done'
00:46:22 Getting requirements to build wheel: started
00:46:22 Getting requirements to build wheel: finished with status 'done'
00:46:22 Preparing metadata (pyproject.toml): started
00:46:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.2.25)
00:46:22 Building wheels for collected packages: omero-py
00:46:22 Building wheel for omero-py (pyproject.toml): started
00:46:23 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:23 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=326c5aeaf063416d68dfeb2cc27fa363b08024abe969f73212387ceb57226e45
00:46:23 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:23 Successfully built omero-py
00:46:23 Installing collected packages: omero-py
00:46:23 Attempting uninstall: omero-py
00:46:23 Found existing installation: omero-py 5.22.0
00:46:24 Uninstalling omero-py-5.22.0:
00:46:24 Successfully uninstalled omero-py-5.22.0
00:46:26 Successfully installed omero-py-5.22.1.dev0
00:46:26 + for x in *.tar.gz
00:46:26 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:26 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:26 Installing build dependencies: started
00:46:27 Installing build dependencies: finished with status 'done'
00:46:27 Getting requirements to build wheel: started
00:46:27 Getting requirements to build wheel: finished with status 'done'
00:46:27 Preparing metadata (pyproject.toml): started
00:46:27 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:27 Building wheels for collected packages: omero-scripts
00:46:27 Building wheel for omero-scripts (pyproject.toml): started
00:46:28 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:28 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=0509fd29d94276bcdd89581bdbdca124a04f4a696f9cfe37fd603a8883568d11
00:46:28 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:28 Successfully built omero-scripts
00:46:28 Installing collected packages: omero-scripts
00:46:28 Successfully installed omero-scripts-5.10.1.dev0
00:46:28 + for x in *.tar.gz
00:46:28 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:28 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:29 Installing build dependencies: started
00:46:29 Installing build dependencies: finished with status 'done'
00:46:29 Getting requirements to build wheel: started
00:46:30 Getting requirements to build wheel: finished with status 'done'
00:46:30 Preparing metadata (pyproject.toml): started
00:46:30 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:30 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:30 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:30 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:46:30 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:30 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:30 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:30 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:30 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:30 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:30 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:46:30 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:30 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:30 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:30 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:30 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:30 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:30 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:30 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:31 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:31 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:31 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:31 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:31 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:31 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:31 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:31 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:31 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:46:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:31 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:31 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:31 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:46:31 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:31 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:31 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:31 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:46:31 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:31 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:31 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:31 Building wheels for collected packages: omero-web
00:46:31 Building wheel for omero-web (pyproject.toml): started
00:46:32 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:32 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=ab5bafa07dd5cd9142ad497ba6fad67ff6016318a0d1c94886f13357263c9d02
00:46:32 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:32 Successfully built omero-web
00:46:32 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:35
00:46:35 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
00:46:35 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:35 --2026-02-28 00:46:35-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:35 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ...
00:46:35 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:46:35 HTTP request sent, awaiting response... 200 OK
00:46:35 Length: 135020 (132K) [text/plain]
00:46:35 Saving to: ‘Figure_To_Pdf.py’
00:46:35
00:46:35 0K .......... .......... .......... .......... .......... 37% 4.05M 0s
00:46:35 50K .......... .......... .......... .......... .......... 75% 11.2M 0s
00:46:35 100K .......... .......... .......... . 100% 5.34M=0.02s
00:46:35
00:46:35 2026-02-28 00:46:35 (5.79 MB/s) - ‘Figure_To_Pdf.py’ saved [135020/135020]
00:46:35
00:46:35 + chmod 755 Figure_To_Pdf.py
00:46:35 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:35 + omero config set omero.db.name OMERO-server
00:46:37 + omero config set omero.db.host pg
00:46:39 + omero config set omero.db.user postgres
00:46:41 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:43 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:45 + omero config set omero.db.poolsize 25
00:46:47 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:49 + omero config set omero.security.trustStorePassword changeit
00:46:51 + omero config set omero.mail.config true
00:46:53 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:46:55 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:46:57 + omero certificates
00:46:59 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:46:59 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:46:59 + '[' false = true ']'
00:46:59 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:46:59 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:46:59 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG dbcommand => upgrade
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG dbhost => localhost
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG dbname => OMERO-server
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG dbpass => omero
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG dbuser => omero
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG rootpass => omero
00:46:59 2026-02-28 00:46:59,738 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:46:59 2026-02-28 00:46:59,738 [omego.extern] INFO Executing : omero version
00:47:01 OMERO.py version:
00:47:01 OMERO.server version:
00:47:01 5.6.3-594-17ce874e89-ice36-b66
00:47:01 5.22.1.dev0
00:47:01 2026-02-28 00:47:01,808 [omego.extern] INFO Completed [2.069 s]
00:47:01 2026-02-28 00:47:01,808 [omego.extern] DEBUG Using omero CLI from omero
00:47:01 2026-02-28 00:47:01,808 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:01 2026-02-28 00:47:01,808 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:01 2026-02-28 00:47:01,808 [omego.extern] INFO Executing : omero config get --show-password
00:47:03 2026-02-28 00:47:03,818 [omego.extern] INFO Completed [2.010 s]
00:47:03 2026-02-28 00:47:03,818 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:03 2026-02-28 00:47:03,818 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:03 2026-02-28 00:47:03,824 [omego.extern] INFO Completed [0.006 s]
00:47:03 2026-02-28 00:47:03,824 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:03 2026-02-28 00:47:03,824 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:03
00:47:03 2026-02-28 00:47:03,824 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:03 2026-02-28 00:47:03,824 [omego.extern] INFO Executing : omero config get --show-password
00:47:05 2026-02-28 00:47:05,842 [omego.extern] INFO Completed [2.017 s]
00:47:05 2026-02-28 00:47:05,842 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:05 2026-02-28 00:47:05,842 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:05 2026-02-28 00:47:05,851 [omego.extern] INFO Completed [0.009 s]
00:47:05 2026-02-28 00:47:05,851 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:47:05 2026-02-28 00:47:05,851 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:05 2026-02-28 00:47:05,851 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:05 2026-02-28 00:47:05,851 [omego.extern] INFO Executing : omero config get --show-password
00:47:07 2026-02-28 00:47:07,841 [omego.extern] INFO Completed [1.990 s]
00:47:07 2026-02-28 00:47:07,841 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:07 2026-02-28 00:47:07,841 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:07 2026-02-28 00:47:07,852 [omego.extern] INFO Completed [0.010 s]
00:47:07 2026-02-28 00:47:07,852 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:07 2026-02-28 00:47:07,852 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:07 2026-02-28 00:47:07,853 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:07 + export LANG=en_US.UTF-8
00:47:07 + LANG=en_US.UTF-8
00:47:07 + export LANGUAGE=en_US:en
00:47:07 + LANGUAGE=en_US:en
00:47:07 + export LC_ALL=en_US.UTF-8
00:47:07 + LC_ALL=en_US.UTF-8
00:47:07 + BUILD_ID=DONT_KILL_ME
00:47:07 + omero admin start
00:47:12 No descriptor given. Using etc/grid/default.xml
00:47:26 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:26 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:26 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:26 Waiting on startup. Use CTRL-C to exit
00:47:26 + omero admin waitup
00:47:28 Waiting on startup. Use CTRL-C to exit
00:47:28 + omero admin diagnostics
00:47:30
00:47:30 ================================================================================
00:47:30 OMERO Diagnostics (admin)
00:47:30 ================================================================================
00:47:30
00:47:30 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:30 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:30 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:30 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:30 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:30 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:30
00:47:30 Component: OMERO.py 5.22.1.dev0
00:47:30 Component: OMERO.server 5.6.3-594-17ce874e89-ice36-b66
00:47:30
00:47:30 Server: icegridnode running
00:47:30 Server: Blitz-0 active (pid = 49080, enabled)
00:47:30 Server: Indexer-0 active (pid = 49109, enabled)
00:47:30 Server: OMERO.Glacier2 active (pid = 49148, enabled)
00:47:30 Server: OMERO.IceStorm active (pid = 49114, enabled)
00:47:30 Server: Processor-0 activating (enabled)
00:47:30 Server: Tables-0 activating (enabled)
00:47:30
00:47:30 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:30 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
00:47:30 Log files: DropBox.log n/a
00:47:30 Log files: FileServer.log n/a
00:47:30 Log files: Indexer-0.log 2.6 KB
00:47:30 Log files: MonitorServer.log n/a
00:47:30 Log files: Processor-0.log 592 B
00:47:30 Log files: Tables-0.log 841 B
00:47:30 Log files: TestDropBox.log n/a
00:47:30 Log files: master.err empty
00:47:30 Log files: master.out 30.1 KB
00:47:30 Log files: Total size 0.06 MB
00:47:30
00:47:30
00:47:30 Environment:OMERO_HOME=(unset)
00:47:30 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:30 Environment:OMERO_NODE=(unset)
00:47:30 Environment:OMERO_MASTER=(unset)
00:47:30 Environment:OMERO_USERDIR=(unset)
00:47:30 Environment:OMERO_TMPDIR=(unset)
00:47:30 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:30 Environment:PYTHONPATH=(unset)
00:47:30 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:30 Environment:LD_LIBRARY_PATH=(unset)
00:47:30 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:30
00:47:30 OMERO SSL port:4064
00:47:30 OMERO TCP port:4063
00:47:30 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:30 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:30
00:47:30 JVM settings: Blitz-${index} -Xmx7200m
00:47:30 JVM settings: Indexer-${index} -Xmx4800m
00:47:30 JVM settings: PixelData-${index} -Xmx7200m
00:47:30 JVM settings: Repository-${index} -Xmx4800m
00:47:30
00:47:30 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 28 February 2026 61d07eeb7b7d5581b6d3c2dd1afbbacb2f3048b8
00:47:30 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 28 February 2026 61d07eeb7b7d5581b6d3c2dd1afbbacb2f3048b8
00:47:30 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 28 February 2026 61d07eeb7b7d5581b6d3c2dd1afbbacb2f3048b8
00:47:30 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 28 February 2026 06d31a87f1eb4020125abf7869b2b512498e4eaa
00:47:30 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:30 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:30 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 18013d454287c4398f9d4bf830d6ab429aafdd21
00:47:31 + deactivate
00:47:31 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:31 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:31 + export PATH
00:47:31 + unset _OLD_VIRTUAL_PATH
00:47:31 + '[' -n '' ']'
00:47:31 + hash -r
00:47:31 + '[' -n '' ']'
00:47:31 + unset VIRTUAL_ENV
00:47:31 + unset VIRTUAL_ENV_PROMPT
00:47:31 + '[' '!' '' = nondestructive ']'
00:47:31 + unset -f deactivate
00:47:31 Finished: SUCCESS
