01:06:10 Started by upstream project "Trigger" build number 258
01:06:10 originally caused by:
01:06:10 Started by timer
01:06:10 Running as SYSTEM
01:06:10 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
01:06:10 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins53968946370306487.sh
01:06:10 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
01:06:11 + python3 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
01:06:15 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:06:15 ++ deactivate nondestructive
01:06:15 ++ '[' -n '' ']'
01:06:15 ++ '[' -n '' ']'
01:06:15 ++ '[' -n /bin/bash -o -n '' ']'
01:06:15 ++ hash -r
01:06:15 ++ '[' -n '' ']'
01:06:15 ++ unset VIRTUAL_ENV
01:06:15 ++ '[' '!' nondestructive = nondestructive ']'
01:06:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:06:15 ++ export VIRTUAL_ENV
01:06:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:15 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:15 ++ export PATH
01:06:15 ++ '[' -n '' ']'
01:06:15 ++ '[' -z '' ']'
01:06:15 ++ _OLD_VIRTUAL_PS1=
01:06:15 ++ PS1='(.venv3) '
01:06:15 ++ export PS1
01:06:15 ++ '[' -n /bin/bash -o -n '' ']'
01:06:15 ++ hash -r
01:06:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:06:15 Collecting zeroc-ice==3.6.5
01:06:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:06:17 Installing collected packages: zeroc-ice
01:06:18 Successfully installed zeroc-ice-3.6.5
01:06:18 + pip install -U pip future setuptools
01:06:18 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:06:18 Collecting pip
01:06:18 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
01:06:19 Collecting future
01:06:19 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:06:19 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
01:06:19 Collecting setuptools
01:06:19 Using cached setuptools-75.2.0-py3-none-any.whl (1.2 MB)
01:06:19 Installing collected packages: setuptools, pip, future
01:06:19 Attempting uninstall: setuptools
01:06:19 Found existing installation: setuptools 53.0.0
01:06:19 Uninstalling setuptools-53.0.0:
01:06:19 Successfully uninstalled setuptools-53.0.0
01:06:20 Attempting uninstall: pip
01:06:20 Found existing installation: pip 21.2.3
01:06:20 Uninstalling pip-21.2.3:
01:06:20 Successfully uninstalled pip-21.2.3
01:06:22 Successfully installed future-1.0.0 pip-24.2 setuptools-75.2.0
01:06:22 + pip install markdown
01:06:22 Collecting markdown
01:06:22 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:06:23 Collecting importlib-metadata>=4.4 (from markdown)
01:06:23 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:06:23 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:06:23 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
01:06:23 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:06:23 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:06:23 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
01:06:23 Installing collected packages: zipp, importlib-metadata, markdown
01:06:23 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
01:06:23 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
01:06:23 Collecting mox3
01:06:24 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
01:06:24 Collecting pytest
01:06:24 Using cached pytest-8.3.3-py3-none-any.whl.metadata (7.5 kB)
01:06:24 Collecting pytest-django
01:06:24 Using cached pytest_django-4.9.0-py3-none-any.whl.metadata (8.2 kB)
01:06:24 Collecting pytest-xdist
01:06:24 Using cached pytest_xdist-3.6.1-py3-none-any.whl.metadata (4.3 kB)
01:06:24 Collecting pytest-mock
01:06:24 Using cached pytest_mock-3.14.0-py3-none-any.whl.metadata (3.8 kB)
01:06:24 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
01:06:24 Using cached pbr-6.1.0-py2.py3-none-any.whl.metadata (3.4 kB)
01:06:24 Collecting fixtures>=3.0.0 (from mox3)
01:06:24 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
01:06:24 Collecting iniconfig (from pytest)
01:06:24 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
01:06:24 Collecting packaging (from pytest)
01:06:24 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
01:06:24 Collecting pluggy<2,>=1.5 (from pytest)
01:06:24 Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
01:06:24 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
01:06:24 Using cached exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)
01:06:25 Collecting tomli>=1 (from pytest)
01:06:25 Using cached tomli-2.0.2-py3-none-any.whl.metadata (10.0 kB)
01:06:25 Collecting execnet>=2.1 (from pytest-xdist)
01:06:25 Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
01:06:25 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
01:06:25 Using cached pytest-8.3.3-py3-none-any.whl (342 kB)
01:06:25 Using cached pytest_django-4.9.0-py3-none-any.whl (23 kB)
01:06:25 Using cached pytest_xdist-3.6.1-py3-none-any.whl (46 kB)
01:06:25 Using cached pytest_mock-3.14.0-py3-none-any.whl (9.9 kB)
01:06:25 Using cached exceptiongroup-1.2.2-py3-none-any.whl (16 kB)
01:06:25 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
01:06:25 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
01:06:25 Using cached pbr-6.1.0-py2.py3-none-any.whl (108 kB)
01:06:25 Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
01:06:25 Using cached tomli-2.0.2-py3-none-any.whl (13 kB)
01:06:25 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
01:06:25 Using cached packaging-24.1-py3-none-any.whl (53 kB)
01:06:25 Installing collected packages: tomli, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-xdist, pytest-mock, pytest-django, mox3
01:06:26 Successfully installed exceptiongroup-1.2.2 execnet-2.1.1 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.1 pbr-6.1.0 pluggy-1.5.0 pytest-8.3.3 pytest-django-4.9.0 pytest-mock-3.14.0 pytest-xdist-3.6.1 tomli-2.0.2
01:06:26 + pip install tables
01:06:26 Collecting tables
01:06:26 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:06:27 Collecting numpy>=1.19.0 (from tables)
01:06:27 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:06:27 Collecting numexpr>=2.6.2 (from tables)
01:06:27 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
01:06:27 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.1)
01:06:27 Collecting py-cpuinfo (from tables)
01:06:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:06:27 Collecting blosc2>=2.3.0 (from tables)
01:06:27 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:06:27 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:06:28 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:06:28 Collecting msgpack (from blosc2>=2.3.0->tables)
01:06:28 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:06:28 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:06:28 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:06:28 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
01:06:28 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:06:29 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:06:29 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:06:29 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:06:29 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:06:32 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 py-cpuinfo-9.0.0 tables-3.9.2
01:06:32 + pip install jinja2
01:06:33 Collecting jinja2
01:06:33 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
01:06:33 Collecting MarkupSafe>=2.0 (from jinja2)
01:06:33 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:06:33 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
01:06:33 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:06:33 Installing collected packages: MarkupSafe, jinja2
01:06:33 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.4
01:06:33 + pip install PyYAML
01:06:34 Collecting PyYAML
01:06:34 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:06:34 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:06:34 Installing collected packages: PyYAML
01:06:34 Successfully installed PyYAML-6.0.2
01:06:34 + pip install omero-py omero-web
01:06:35 Collecting omero-py
01:06:35 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:06:35 Collecting omero-web
01:06:35 Using cached omero_web-5.27.2-py3-none-any.whl.metadata (6.4 kB)
01:06:35 Collecting urllib3<2 (from omero-py)
01:06:35 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:06:35 Collecting appdirs (from omero-py)
01:06:35 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:06:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:06:36 Collecting numpy<2 (from omero-py)
01:06:36 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:06:36 Collecting Pillow>=10.0.0 (from omero-py)
01:06:36 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:06:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py) (6.0.2)
01:06:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:06:36 Collecting requests (from omero-py)
01:06:36 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:06:36 Collecting portalocker (from omero-py)
01:06:36 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
01:06:36 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
01:06:36 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:06:37 Collecting Django<4.3,>=4.2.3 (from omero-web)
01:06:37 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
01:06:37 Collecting django-pipeline==2.1.0 (from omero-web)
01:06:37 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:06:37 Collecting django-cors-headers==3.7.0 (from omero-web)
01:06:37 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:06:37 Collecting whitenoise>=5.3.0 (from omero-web)
01:06:37 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
01:06:37 Collecting gunicorn>=19.3 (from omero-web)
01:06:37 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:06:37 Collecting omero-marshal>=0.7.0 (from omero-web)
01:06:37 Using cached omero_marshal-0.9.0-py3-none-any.whl.metadata (2.2 kB)
01:06:37 Collecting pytz (from omero-web)
01:06:37 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:06:37 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web) (24.1)
01:06:37 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web)
01:06:37 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:06:37 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web)
01:06:37 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
01:06:38 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:06:38 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
01:06:38 Collecting idna<4,>=2.5 (from requests->omero-py)
01:06:38 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:06:38 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:06:38 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
01:06:38 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web)
01:06:38 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:06:38 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:06:38 Using cached omero_web-5.27.2-py3-none-any.whl (2.8 MB)
01:06:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:06:38 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:06:38 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:06:38 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
01:06:38 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:06:38 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:06:39 Using cached omero_marshal-0.9.0-py3-none-any.whl (88 kB)
01:06:39 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB)
01:06:40 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
01:06:40 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:06:40 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
01:06:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:06:40 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:06:40 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:06:40 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:06:40 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
01:06:40 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
01:06:40 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:06:40 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
01:06:40 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:06:41 Installing collected packages: pytz, django-pipeline, appdirs, whitenoise, urllib3, typing-extensions, sqlparse, portalocker, Pillow, omero-marshal, numpy, idna, gunicorn, charset-normalizer, certifi, requests, concurrent-log-handler, asgiref, omero-py, Django, django-cors-headers, omero-web
01:06:42 Attempting uninstall: numpy
01:06:42 Found existing installation: numpy 2.0.2
01:06:42 Uninstalling numpy-2.0.2:
01:06:42 Successfully uninstalled numpy-2.0.2
01:06:49 Successfully installed Django-4.2.16 Pillow-11.0.0 appdirs-1.4.4 asgiref-3.8.1 certifi-2024.8.30 charset-normalizer-3.4.0 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-pipeline-2.1.0 gunicorn-23.0.0 idna-3.10 numpy-1.26.4 omero-marshal-0.9.0 omero-py-5.19.5 omero-web-5.27.2 portalocker-2.10.1 pytz-2024.2 requests-2.32.3 sqlparse-0.5.1 typing-extensions-4.12.2 urllib3-1.26.20 whitenoise-6.7.0
01:06:49 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins21541291586645220.sh
01:06:49 + source /home/settings.env
01:06:49 ++ OMERO_DB_HOST=pg
01:06:49 ++ OMERO_DB_USER=postgres
01:06:49 ++ OMERO_DB_PASS=
01:06:49 ++ OMERO_ROOT_PASS=omero
01:06:49 ++ OMERO_DATA_DIR=/OMERO
01:06:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:06:49 + OMERO_DB_NAME=OMERO-test-integration
01:06:49 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:06:49 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:49 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:49 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:49 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
01:06:49 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:06:49 ++ deactivate nondestructive
01:06:49 ++ '[' -n '' ']'
01:06:49 ++ '[' -n '' ']'
01:06:49 ++ '[' -n /bin/bash -o -n '' ']'
01:06:49 ++ hash -r
01:06:49 ++ '[' -n '' ']'
01:06:49 ++ unset VIRTUAL_ENV
01:06:49 ++ '[' '!' nondestructive = nondestructive ']'
01:06:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:06:49 ++ export VIRTUAL_ENV
01:06:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:49 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:49 ++ export PATH
01:06:49 ++ '[' -n '' ']'
01:06:49 ++ '[' -z '' ']'
01:06:49 ++ _OLD_VIRTUAL_PS1=
01:06:49 ++ PS1='(.venv3) '
01:06:49 ++ export PS1
01:06:49 ++ '[' -n /bin/bash -o -n '' ']'
01:06:49 ++ hash -r
01:06:49 + omero admin stop
01:06:51 Waiting on shutdown. Use CTRL-C to exit
01:06:51 .+ deactivate
01:07:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:07:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:01 + export PATH
01:07:01 + unset _OLD_VIRTUAL_PATH
01:07:01 + '[' -n '' ']'
01:07:01 + '[' -n /bin/bash -o -n '' ']'
01:07:01 + hash -r
01:07:01 + '[' -n '' ']'
01:07:01 + unset VIRTUAL_ENV
01:07:01 + '[' '!' '' = nondestructive ']'
01:07:01 + unset -f deactivate
01:07:01 + sleep 5
01:07:06 + dropdb -f -h pg -U postgres OMERO-test-integration
01:07:09 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
01:07:09 Copied 1 artifact from "OMERO-build" build number 214
01:07:10 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 211
01:07:10 Copied 2 artifacts from "OMERO-build-build" build number 222
01:07:10 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins13744323007072805623.sh
01:07:10 + source /home/settings.env
01:07:10 ++ OMERO_DB_HOST=pg
01:07:10 ++ OMERO_DB_USER=postgres
01:07:10 ++ OMERO_DB_PASS=
01:07:10 ++ OMERO_ROOT_PASS=omero
01:07:10 ++ OMERO_DATA_DIR=/OMERO
01:07:10 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:07:10 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:07:10 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:07:10 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:07:10 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:07:10 + OMERO_DB_NAME=OMERO-test-integration
01:07:10 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
01:07:10 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
01:07:10 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:07:10 ++ ls openmicroscopy-5.6.3-513-75ed6e6d79-ice36.zip
01:07:10 + ZIP_SRC=openmicroscopy-5.6.3-513-75ed6e6d79-ice36.zip
01:07:10 + unzip openmicroscopy-5.6.3-513-75ed6e6d79-ice36.zip
01:07:10 Archive: openmicroscopy-5.6.3-513-75ed6e6d79-ice36.zip
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.classpath-template
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/Pull_Request_Template.md
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/workflows/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/workflows/docker_build.yml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/workflows/release.yml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/workflows/source_build.yml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.github/workflows/update.yaml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.mailmap
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/.project
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/CMakeLists.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/CONTRIBUTING.md
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/Dockerfile
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/LICENSE.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/README.md
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/SUPPORT.md
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/build.bat
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/build.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/build.xml
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/.classpath
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/.project
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/excludebugs.xml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/global.xml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/hibernate.xml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/lifecycle.xml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/version.xml
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/scripts/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/scripts/parse_version
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/scripts/source-archive.py
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/build.xml
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/README.md
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/build.xml
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/plugins/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/plugins/robot.py
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/robot.template
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/annotation.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/login.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/thumbs.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/tree.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/web/webadmin.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/resources/well_sample_posXY.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/robot_setup.sh
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/annotate_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/create_scenario.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/delete_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/download_options_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/filter_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/forms_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/history_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/post_copy_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/post_cut_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/post_drag_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/post_manage_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/rdef_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/search.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/search_annotation_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/show_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/spw_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/tagging_test.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/view_image.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/webadmin_create_group_and_user.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/webadmin_login.robot
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tests/ui/testcases/web/webadmin_user_settings.robot
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/CMakeLists.txt
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/FindIce.cmake
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/GTest.cmake
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/TemplateCmdConfig.cmake.in
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/TemplateConfig.cmake.in
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/TemplateShellConfig.cmake.in
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/Version.cmake
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CMakeLists.txt
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CONTRIBUTORS
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/LICENSE
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/README
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test_.cc
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_test_utils.py
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/README.h
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPush.h
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/IcePortPop.h
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/IcePortPush.h
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/conversions.h
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/internal/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/internal/fixes.h
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/model/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/src/omero/model/DetailsI.cpp
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/bin/
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01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/examples/load.omero
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/examples/projection_1.py
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/examples/submit.omero
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/examples/upload.omero
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/
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01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/clitest/
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/fstest/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/helpers.py
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/metadata/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context.yml
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/metadata/test_pydict_text.py
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/scriptsharness/
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01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.cfg
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/scriptstest/
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/tablestest/
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_4_4_5.h5.bz2
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py
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01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/test_annotationPermissions.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroPy/test/integration/test_chgrp.py
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01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__10/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__11/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__2/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__3/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__4/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__5/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__6/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__7/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__8/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__9/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__4/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__5/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__6/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__7/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.1__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.2__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.2__0/t/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.3__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.4__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.0__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.1__1/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.2__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__1/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__2/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__3/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:07:10 creating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/schema.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/sql/psql/OMERO5.4__0/views.sql
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/test.xml
01:07:10 inflating: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/update_dependencies.sh
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/antlib/resources/gitversion.xml
01:07:10 extracting: openmicroscopy-5.6.3-513-75ed6e6d79-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:07:10 + rm -f openmicroscopy-5.6.3-513-75ed6e6d79-ice36.zip
01:07:10 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-513-75ed6e6d79-ice36 /home/omero/workspace/OMERO-test-integration/src
01:07:10 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:07:10 ++ deactivate nondestructive
01:07:10 ++ '[' -n '' ']'
01:07:10 ++ '[' -n '' ']'
01:07:10 ++ '[' -n /bin/bash -o -n '' ']'
01:07:10 ++ hash -r
01:07:10 ++ '[' -n '' ']'
01:07:10 ++ unset VIRTUAL_ENV
01:07:10 ++ '[' '!' nondestructive = nondestructive ']'
01:07:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:07:10 ++ export VIRTUAL_ENV
01:07:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:10 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:10 ++ export PATH
01:07:10 ++ '[' -n '' ']'
01:07:10 ++ '[' -z '' ']'
01:07:10 ++ _OLD_VIRTUAL_PS1=
01:07:10 ++ PS1='(.venv3) '
01:07:10 ++ export PS1
01:07:10 ++ '[' -n /bin/bash -o -n '' ']'
01:07:10 ++ hash -r
01:07:10 + for x in *.tar.gz
01:07:10 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:07:10 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:07:10 Installing build dependencies: started
01:07:13 Installing build dependencies: finished with status 'done'
01:07:13 Getting requirements to build wheel: started
01:07:13 Getting requirements to build wheel: finished with status 'done'
01:07:13 Preparing metadata (pyproject.toml): started
01:07:13 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:13 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:07:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:07:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:07:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:07:13 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:07:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0)
01:07:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:07:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:07:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:07:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
01:07:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0)
01:07:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:07:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
01:07:13 Building wheels for collected packages: omero-dropbox
01:07:13 Building wheel for omero-dropbox (pyproject.toml): started
01:07:14 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:07:14 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49058 sha256=b9f36780141ead4c22d71e31a3e2a67e42138d50c3bd7407c37280066f86135b
01:07:14 Stored in directory: /home/omero/.cache/pip/wheels/ef/93/2d/d44d5be6e4d9a58eecdbeb6e3385179e95ae7b80719377e781
01:07:14 Successfully built omero-dropbox
01:07:14 Installing collected packages: omero-dropbox
01:07:14 Successfully installed omero-dropbox-5.7.1.dev0
01:07:14 + for x in *.tar.gz
01:07:14 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:07:14 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:07:14 Installing build dependencies: started
01:07:16 Installing build dependencies: finished with status 'done'
01:07:16 Getting requirements to build wheel: started
01:07:16 Getting requirements to build wheel: finished with status 'done'
01:07:16 Preparing metadata (pyproject.toml): started
01:07:17 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:17 Building wheels for collected packages: omero_marshal
01:07:17 Building wheel for omero_marshal (pyproject.toml): started
01:07:17 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:07:17 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=4c9bf3e15e27016ec989f73be26c398b5257bc26e00a472a2fae043aa767732e
01:07:17 Stored in directory: /home/omero/.cache/pip/wheels/1a/3a/cd/b39392f5c8ba80a35bab4a0f80f93c7c4729cce6868750f4f3
01:07:17 Successfully built omero_marshal
01:07:17 Installing collected packages: omero_marshal
01:07:17 Attempting uninstall: omero_marshal
01:07:17 Found existing installation: omero-marshal 0.9.0
01:07:17 Uninstalling omero-marshal-0.9.0:
01:07:17 Successfully uninstalled omero-marshal-0.9.0
01:07:17 Successfully installed omero_marshal-0.9.1.dev0
01:07:17 + for x in *.tar.gz
01:07:17 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:07:18 Processing ./omero_py-5.19.6.dev0.tar.gz
01:07:18 Installing build dependencies: started
01:07:20 Installing build dependencies: finished with status 'done'
01:07:20 Getting requirements to build wheel: started
01:07:20 Getting requirements to build wheel: finished with status 'done'
01:07:20 Preparing metadata (pyproject.toml): started
01:07:21 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:07:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:07:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:07:21 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:07:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0)
01:07:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:07:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:07:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:07:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
01:07:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0)
01:07:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:07:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
01:07:21 Building wheels for collected packages: omero-py
01:07:21 Building wheel for omero-py (pyproject.toml): started
01:07:22 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:07:22 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783246 sha256=5b5398aa7821f32d41a95e49a731e8106c95f2219f2c567942a245e7df1a916e
01:07:22 Stored in directory: /home/omero/.cache/pip/wheels/0e/51/53/0205c66cdbe856d4da23e6b9c5d613133b733ef358e57fa643
01:07:22 Successfully built omero-py
01:07:22 Installing collected packages: omero-py
01:07:22 Attempting uninstall: omero-py
01:07:22 Found existing installation: omero-py 5.19.5
01:07:22 Uninstalling omero-py-5.19.5:
01:07:23 Successfully uninstalled omero-py-5.19.5
01:07:25 Successfully installed omero-py-5.19.6.dev0
01:07:25 + for x in *.tar.gz
01:07:25 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
01:07:25 Processing ./omero_scripts-5.8.4.dev0.tar.gz
01:07:25 Installing build dependencies: started
01:07:27 Installing build dependencies: finished with status 'done'
01:07:27 Getting requirements to build wheel: started
01:07:27 Getting requirements to build wheel: finished with status 'done'
01:07:27 Preparing metadata (pyproject.toml): started
01:07:27 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:27 Building wheels for collected packages: omero-scripts
01:07:27 Building wheel for omero-scripts (pyproject.toml): started
01:07:28 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:07:28 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116645 sha256=2bda5159a5c068503b2e67929ec0fe376062d2435a8d92774910c83674dd796e
01:07:28 Stored in directory: /home/omero/.cache/pip/wheels/28/3e/92/6522b883548147569f7375ed3132e6964d3645235d0b7e283f
01:07:28 Successfully built omero-scripts
01:07:28 Installing collected packages: omero-scripts
01:07:28 Successfully installed omero-scripts-5.8.4.dev0
01:07:28 + for x in *.tar.gz
01:07:28 + pip install -U omero_web-5.27.3.dev0.tar.gz
01:07:28 Processing ./omero_web-5.27.3.dev0.tar.gz
01:07:29 Installing build dependencies: started
01:07:31 Installing build dependencies: finished with status 'done'
01:07:31 Getting requirements to build wheel: started
01:07:31 Getting requirements to build wheel: finished with status 'done'
01:07:31 Preparing metadata (pyproject.toml): started
01:07:31 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:31 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
01:07:31 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.25)
01:07:31 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (4.2.16)
01:07:31 Requirement already satisfied: django-pipeline==2.1.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.1.0)
01:07:31 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (3.7.0)
01:07:31 Collecting django-csp (from omero-web==5.27.3.dev0)
01:07:31 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:07:31 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (6.7.0)
01:07:31 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (23.0.0)
01:07:31 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
01:07:31 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (11.0.0)
01:07:31 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
01:07:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
01:07:31 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
01:07:31 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (3.8.1)
01:07:31 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (0.5.1)
01:07:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
01:07:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
01:07:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
01:07:31 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
01:07:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
01:07:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
01:07:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
01:07:31 Requirement already satisfied: typing-extensions>=4 in ./.venv3/lib/python3.9/site-packages (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (4.12.2)
01:07:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.4.0)
01:07:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
01:07:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
01:07:32 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:07:32 Building wheels for collected packages: omero-web
01:07:32 Building wheel for omero-web (pyproject.toml): started
01:07:33 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:07:33 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766670 sha256=428eda79ce11a7f7666434ff2662694655b53798b8b6c6eb06d5ca5d41993b5b
01:07:33 Stored in directory: /home/omero/.cache/pip/wheels/f0/b3/64/dc77f8e1a2385b2f8ef248e63a59b8ba8d51c2c928e147e9d6
01:07:33 Successfully built omero-web
01:07:33 Installing collected packages: django-csp, omero-web
01:07:34 Attempting uninstall: omero-web
01:07:34 Found existing installation: omero-web 5.27.2
01:07:34 Uninstalling omero-web-5.27.2:
01:07:34 Successfully uninstalled omero-web-5.27.2
01:07:34 Successfully installed django-csp-3.8 omero-web-5.27.3.dev0
01:07:35 + pip install omero-certificates
01:07:35 Collecting omero-certificates
01:07:35 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:07:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6.dev0)
01:07:35 Collecting distro==1.8.0 (from omero-certificates)
01:07:35 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:07:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:07:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:07:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:07:35 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:07:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0)
01:07:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:07:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:07:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:07:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
01:07:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0)
01:07:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:07:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
01:07:35 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:07:35 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:07:36 Installing collected packages: distro, omero-certificates
01:07:36 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:07:36 + for x in omero-cli-duplicate
01:07:36 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:07:36 Collecting omero-cli-duplicate
01:07:36 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-926juzop/omero-cli-duplicate_5467facaa7eb4c69a988ea041c3ab049
01:07:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-926juzop/omero-cli-duplicate_5467facaa7eb4c69a988ea041c3ab049
01:07:37 Running command git checkout -b merge_ci --track origin/merge_ci
01:07:37 Switched to a new branch 'merge_ci'
01:07:37 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:07:37 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0b078cd4bd16b51bf8212680bc6059a0834b63be
01:07:37 Installing build dependencies: started
01:07:39 Installing build dependencies: finished with status 'done'
01:07:39 Getting requirements to build wheel: started
01:07:39 Getting requirements to build wheel: finished with status 'done'
01:07:39 Preparing metadata (pyproject.toml): started
01:07:39 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:39 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6.dev0)
01:07:39 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:07:39 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:07:39 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:07:39 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:07:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0)
01:07:39 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:07:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:07:39 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:07:39 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
01:07:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0)
01:07:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:07:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
01:07:40 Building wheels for collected packages: omero-cli-duplicate
01:07:40 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:07:40 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:07:40 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=357f744930983c5c65aaca49e113478e0273643ffedb7770f333c9f648a63172
01:07:40 Stored in directory: /tmp/pip-ephem-wheel-cache-l5bqpgmw/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:07:40 Successfully built omero-cli-duplicate
01:07:40 Installing collected packages: omero-cli-duplicate
01:07:40 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:07:40 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
01:07:40 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
01:07:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:07:40 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
01:07:41
01:07:41 check-ivy:
01:07:41 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
01:07:41 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
01:07:41 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:41 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:42
01:07:42 build-scons:
01:07:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
01:07:42
01:07:42 build:
01:07:42 No sub-builds to iterate on
01:07:42 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:07:42 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:07:42 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:07:42 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:07:42
01:07:42 tools-init:
01:07:42 no-op
01:07:42
01:07:42 retrieve:
01:07:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:42 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:42 WARNING: An illegal reflective access operation has occurred
01:07:42 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-test-integration/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:07:42 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:07:42 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:07:42 WARNING: All illegal access operations will be denied in a future release
01:07:58
01:07:58 prepare:
01:07:58 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:07:58 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:07:58 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:07:58
01:07:58 pre-compile:
01:07:58 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:07:58 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:07:58 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:07:58 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:07:58 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:07:58
01:07:58 compile:
01:07:58 no-op
01:07:58
01:07:58 package:
01:07:58 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
01:07:59
01:07:59 install:
01:07:59 :: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-513-75ed6e6d79-ice36-ice36 :: integration :: Thu Oct 24 01:07:42 UTC 2024
01:07:59 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
01:07:59 :: publishing :: omero#omero_client
01:07:59 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-75ed6e6d79-ice36-ice36/omero_client-5.6.3-513-75ed6e6d79-ice36-ice36.jar
01:07:59 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-75ed6e6d79-ice36-ice36/omero_client-5.6.3-513-75ed6e6d79-ice36-ice36.xml
01:07:59 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:07:59 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:07:59
01:07:59 retrieve:
01:07:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:59 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:59 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
01:07:59
01:07:59 dist:
01:07:59 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
01:07:59 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
01:07:59 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:07:59 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:07:59 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
01:07:59 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:07:59 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
01:07:59 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
01:07:59 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:08:00
01:08:00 copy-licenses:
01:08:00 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:08:00 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
01:08:00 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
01:08:00
01:08:00 copy-history:
01:08:00 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:08:00
01:08:00 copy-etc:
01:08:00 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:08:00 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
01:08:00
01:08:00 copy-sql:
01:08:00 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:08:03
01:08:03 copy-server:
01:08:03 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:08:03
01:08:03 copy-client:
01:08:03 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
01:08:04 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:08:04
01:08:04 update-version:
01:08:04 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:08:04
01:08:04 create-workdirs:
01:08:04 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
01:08:04 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
01:08:04
01:08:04 copy-luts:
01:08:04 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:08:04 Copying 39 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:08:04
01:08:04 test-compile:
01:08:04 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:08:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:08:05
01:08:05 testng-init:
01:08:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:08:05 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:08:08 01:08:07,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:08:08 01:08:07,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - No custom configurators were discovered as a service.
01:08:08 01:08:07,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:08:08 01:08:08,002 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:08:08 01:08:08,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:08:08 01:08:08,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:08:08 01:08:08,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:08:08 01:08:08,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:08:08 01:08:08,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:08:08 01:08:08,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:08:08 01:08:08,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:08:08 01:08:08,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs multiple times on the classpath.
01:08:08 01:08:08,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:08:08 01:08:08,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:08:08 01:08:08,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:08:08 01:08:08,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:08:08 01:08:08,288 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:08:08 01:08:08,291 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:08:08 01:08:08,291 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - Please move "immediateFlush" property into the enclosing appender.
01:08:08 01:08:08,358 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - Setting the "immediateFlush" property of the enclosing appender to true
01:08:08 01:08:08,358 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:08:08 01:08:08,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:08:08 01:08:08,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:08:08 01:08:08,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:08:08 01:08:08,359 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:08:08 01:08:08,359 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:08:08 01:08:08,360 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@66e478c7 - End of configuration.
01:08:08 01:08:08,362 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1a35f99a - Registering current configuration as safe fallback point
01:08:08 01:08:08,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 356 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:08:08
01:08:08 lifecycle.test-compile:
01:08:08 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:08:08 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:08:08 warning: [options] bootstrap class path not set in conjunction with -source 8
01:08:10 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:10 import omero.grid.RawAccessRequest;
01:08:10 ^
01:08:10 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:10 import omero.grid.RawAccessRequest;
01:08:10 ^
01:08:10 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:10 import omero.grid.RawAccessRequest;
01:08:10 ^
01:08:10 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:10 import omero.model.ImportJob;
01:08:10 ^
01:08:10 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:08:10 import omero.model.ImportJobI;
01:08:10 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:08:11 IObject link = (IObject) linkClass.newInstance();
01:08:11 ^
01:08:11 where T is a type-variable:
01:08:11 T extends Object declared in class Class
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:08:11 T copy = (T) obj.getClass().newInstance();
01:08:11 ^
01:08:11 where T is a type-variable:
01:08:11 T extends Object declared in class Class
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:11 RawAccessRequest raw = new RawAccessRequest();
01:08:11 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:11 RawAccessRequest raw = new RawAccessRequest();
01:08:11 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:08:11 raw.repoUuid = legacy.root().getHash().getValue();
01:08:11 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:08:11 raw.command = "rm";
01:08:11 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:08:11 raw.args = Arrays.asList(path);
01:08:11 ^
01:08:11 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:08:11 final IObject link = linkClass.newInstance();
01:08:11 ^
01:08:11 where T is a type-variable:
01:08:11 T extends Object declared in class Class
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:08:12 originalLink.setChild(annotationClass.newInstance());
01:08:12 ^
01:08:12 where T is a type-variable:
01:08:12 T extends Object declared in class Class
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:08:12 RoiResult r = svc.findByImage(id, new RoiOptions());
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:12 final RawAccessRequest request = new RawAccessRequest();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:12 final RawAccessRequest request = new RawAccessRequest();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:08:12 request.repoUuid = repo.root().getHash().getValue();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:08:12 request.command = "exists";
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:08:12 request.args = Collections.singletonList(dirPath);
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:12 final RawAccessRequest request = new RawAccessRequest();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:08:12 final RawAccessRequest request = new RawAccessRequest();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:08:12 request.repoUuid = repo.root().getHash().getValue();
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:08:12 request.command = "exists";
01:08:12 ^
01:08:12 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:08:12 request.args = Collections.singletonList(dirName);
01:08:12 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:13 final ImportJob importJob = new ImportJobI();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:08:13 final ImportJob importJob = new ImportJobI();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:08:13 importJob.setImageName(omero.rtypes.rstring(name));
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:08:13 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:08:13 final String savedName = sent.getImageName().getValue().toString();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:08:13 final String savedDesc = sent.getImageDescription().getValue().toString();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:08:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:08:13 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:08:13 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 RoiResult r = svc.findByImage(image.getId().getValue(),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:08:13 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:08:13 table = svc.getTable(f.getId().getValue());
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 RoiResult r = svc.findByImage(image.getId().getValue(),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:08:13 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:08:13 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:08:13 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:08:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:08:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:08:13 svc.getShapeStatsRestricted(
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:08:13 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:08:13 ^
01:08:13 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:08:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:08:13 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:08:14 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:08:14 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:08:14 request.typesToIgnore = Collections.singletonList("Annotation");
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:08:14 request.typesToIgnore = Collections.singletonList("Annotation");
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:08:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:08:14 p2.setRelatedTo(p1);
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:08:14 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:08:14 pixels1.setRelatedTo(pixels2);
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:08:14 Pixels pixels = pixels1.getRelatedTo();
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:08:14 Assert.assertNull(pixels1.getRelatedTo());
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:08:14 pixels1.setRelatedTo(pixels2);
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:08:14 Pixels pixels = pixels1.getRelatedTo();
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:08:14 Assert.assertNull(pixels1.getRelatedTo());
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:08:14 ^
01:08:14 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:08:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:08:14 ^
01:08:14 Note: Some input files use unchecked or unsafe operations.
01:08:14 Note: Recompile with -Xlint:unchecked for details.
01:08:14 88 warnings
01:08:14 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_566371656.tmp
01:08:14 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:08:14 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:08:14 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-75ed6e6d79-ice36-ice36 :: integration :: Thu Oct 24 01:08:04 UTC 2024
01:08:14 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:08:14 :: publishing :: omero#OmeroJava-test
01:08:14 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.jar
01:08:14 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.xml
01:08:14
01:08:14 BUILD SUCCESSFUL
01:08:14 Total time: 33 seconds
01:08:14 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:08:14 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:08:14 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:08:14 + omero config set omero.db.name OMERO-test-integration
01:08:15 + omero config set omero.db.host pg
01:08:16 + omero config set omero.db.user postgres
01:08:17 + omero config set omero.db.poolsize 50
01:08:18 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
01:08:19 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
01:08:20 + omero config set omero.ports.prefix 1
01:08:21 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
01:08:22 + omero certificates
01:08:23 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:08:24 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
01:08:24 + createdb -h pg -U postgres OMERO-test-integration
01:08:25 + omero db script -f dbsetup.sql '' '' omero
01:08:25 WARNING: Positional arguments are deprecated
01:08:26 Using OMERO5.4 for version
01:08:26 Using 0 for patch
01:08:26 Using password from commandline
01:08:27 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
01:08:27 BEGIN
01:08:27 CREATE FUNCTION
01:08:27 CREATE FUNCTION
01:08:27 assert_db_server_prerequisites
01:08:27 --------------------------------
01:08:27
01:08:27 (1 row)
01:08:27
01:08:27 DROP FUNCTION
01:08:27 DROP FUNCTION
01:08:27 CREATE DOMAIN
01:08:27 CREATE DOMAIN
01:08:27 CREATE DOMAIN
01:08:27 CREATE DOMAIN
01:08:27 CREATE DOMAIN
01:08:27 CREATE TYPE
01:08:27 CREATE TYPE
01:08:27 CREATE TYPE
01:08:27 CREATE TYPE
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01:08:27 CREATE TYPE
01:08:27 CREATE TYPE
01:08:27 CREATE TABLE
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01:08:28 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
01:08:28 ALTER TABLE
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01:08:28 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
01:08:28 ALTER TABLE
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01:08:28 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
01:08:28 ALTER TABLE
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01:08:28 ALTER TABLE
01:08:28 CREATE TABLE
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 DROP TABLE
01:08:28 CREATE VIEW
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE FUNCTION
01:08:28 CREATE TRIGGER
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:28 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE FUNCTION
01:08:29 SET CONSTRAINTS
01:08:29 CREATE FUNCTION
01:08:29 CREATE SEQUENCE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE FUNCTION
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE SEQUENCE
01:08:29 INSERT 0 1
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 INSERT 0 1
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
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01:08:29 INSERT 0 1
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01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
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01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 UPDATE 1
01:08:29 ALTER TABLE
01:08:29 CREATE FUNCTION
01:08:29 CREATE TABLE
01:08:29 INSERT 0 1
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 CREATE INDEX
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 ALTER TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE TABLE
01:08:29 INSERT 0 1
01:08:29 INSERT 0 1
01:08:29 CREATE TABLE
01:08:29 INSERT 0 1
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE INDEX
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 DROP TABLE
01:08:29 DROP TABLE
01:08:29 DROP TABLE
01:08:29 DROP TABLE
01:08:29 DROP TABLE
01:08:29 CREATE VIEW
01:08:29 CREATE VIEW
01:08:29 CREATE VIEW
01:08:29 CREATE VIEW
01:08:29 CREATE VIEW
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 ALTER TABLE
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TABLE
01:08:29 CREATE INDEX
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE FUNCTION
01:08:29 CREATE FUNCTION
01:08:29 CREATE TRIGGER
01:08:29 CREATE TRIGGER
01:08:29 CREATE INDEX
01:08:29 UPDATE 1
01:08:29 COMMIT
01:08:29 + rm dbsetup.sql
01:08:29 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:08:29 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:08:29 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
01:08:29 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
01:08:29 + for f in $OMERO_PROFILE/blitz/*
01:08:29 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
01:08:29 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
01:08:29 + for f in $OMERO_PROFILE/blitz/*
01:08:29 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
01:08:29 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
01:08:29 + omero config set omero.mail.config true
01:08:30 + omero config set omero.mail.fake true
01:08:31 + omero config set omero.mail.port 2525
01:08:32 + BUILD_ID=DONT_KILL_ME
01:08:32 + omero admin start
01:08:42 No descriptor given. Using etc/grid/default.xml
01:09:02 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
01:09:02 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
01:09:02 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
01:09:02 Waiting on startup. Use CTRL-C to exit
01:09:02 + omero admin waitup
01:09:03 Waiting on startup. Use CTRL-C to exit
01:09:04 + omero admin diagnostics
01:09:10 ERROR:omero.util.UpgradeCheck:HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=5.19.6.dev0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7ff71aad0550>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
01:09:10
01:09:10 ================================================================================
01:09:10 OMERO Diagnostics (admin)
01:09:10 ================================================================================
01:09:10
01:09:10 Commands: java -version 11.0.24 (/usr/bin/java)
01:09:10 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
01:09:10 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:09:10 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:09:10 Commands: psql --version 16.4 (/usr/bin/psql)
01:09:10 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:09:11
01:09:11 Component: OMERO.py 5.19.6.dev0
01:09:11 Component: OMERO.server 5.6.3-513-75ed6e6d79-ice36-ice36
01:09:11
01:09:11 Server: icegridnode running
01:09:11 Server: Blitz-0 active (pid = 374535, enabled)
01:09:11 Server: DropBox active (pid = 374561, enabled)
01:09:11 Server: FileServer active (pid = 374568, enabled)
01:09:11 Server: Indexer-0 active (pid = 374611, enabled)
01:09:11 Server: MonitorServer active (pid = 374569, enabled)
01:09:11 Server: OMERO.Glacier2 active (pid = 374609, enabled)
01:09:11 Server: OMERO.IceStorm active (pid = 374571, enabled)
01:09:11 Server: PixelData-0 active (pid = 374570, enabled)
01:09:11 Server: Processor-0 activating (enabled)
01:09:11 Server: Tables-0 activating (enabled)
01:09:11 Server: TestDropBox inactive (enabled)
01:09:11
01:09:11 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
01:09:11 Log files: Blitz-0.log 133.7 KB errors=1 warnings=2
01:09:11 Log files: DropBox.log 1.4 KB
01:09:11 Log files: FileServer.log 114 B
01:09:11 Log files: Indexer-0.log 2.9 KB errors=0 warnings=2
01:09:11 Log files: MonitorServer.log 1.2 KB
01:09:11 Log files: PixelData-0.log 3.7 KB errors=0 warnings=2
01:09:11 Log files: Processor-0.log 592 B
01:09:11 Log files: Tables-0.log 841 B
01:09:11 Log files: TestDropBox.log n/a
01:09:11 Log files: master.err 2.1 KB
01:09:11 Log files: master.out 41.5 KB
01:09:11 Log files: Total size 0.19 MB
01:09:11
01:09:11
01:09:11 Environment:OMERO_HOME=(unset)
01:09:11 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:09:11 Environment:OMERO_NODE=(unset)
01:09:11 Environment:OMERO_MASTER=(unset)
01:09:11 Environment:OMERO_USERDIR=(unset)
01:09:11 Environment:OMERO_TMPDIR=(unset)
01:09:11 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:09:11 Environment:PYTHONPATH=(unset)
01:09:11 Environment:ICE_HOME=/opt/ice-3.6.5
01:09:11 Environment:LD_LIBRARY_PATH=(unset)
01:09:11 Environment:DYLD_LIBRARY_PATH=(unset)
01:09:11
01:09:11 OMERO SSL port:14064
01:09:11 OMERO TCP port:14063
01:09:11 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
01:09:11 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 485861)
01:09:11
01:09:11 JVM settings: Blitz-${index} -Xmx9600m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:09:11 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:09:11 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:09:11 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:09:11
01:09:11 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 24 October 2024 62d359b4bc191e66a0e75fbc407c2b440d35be57
01:09:11 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 24 October 2024 62d359b4bc191e66a0e75fbc407c2b440d35be57
01:09:11 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 24 October 2024 62d359b4bc191e66a0e75fbc407c2b440d35be57
01:09:11 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 October 2024 acd1ac3c9a4aa7d1ec69c8106e23103675af5952
01:09:11 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
01:09:11 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
01:09:11 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
01:09:11 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
01:09:11 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
01:09:11 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
01:09:11 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
01:09:11 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/206
01:09:11 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/206
01:09:11 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:09:11 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:09:11 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
01:09:11 Running the integration tests with -Dtestng.useDefaultListeners=true
01:09:11 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/integration integration
01:09:11 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:09:11 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
01:09:12 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:09:12
01:09:12 testng-init:
01:09:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:09:12 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:09:16 01:09:15,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:09:16 01:09:15,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - No custom configurators were discovered as a service.
01:09:16 01:09:15,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:09:16 01:09:15,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:09:16 01:09:15,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:09:16 01:09:15,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:09:16 01:09:15,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:09:16 01:09:15,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:09:16 01:09:15,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:09:16 01:09:15,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:09:16 01:09:15,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:09:16 01:09:15,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs multiple times on the classpath.
01:09:16 01:09:15,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:09:16 01:09:15,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:09:16 01:09:15,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:09:16 01:09:15,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:09:16 01:09:16,002 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:09:16 01:09:16,004 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:09:16 01:09:16,004 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Please move "immediateFlush" property into the enclosing appender.
01:09:16 01:09:16,064 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Setting the "immediateFlush" property of the enclosing appender to true
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:09:16 01:09:16,065 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:09:16 01:09:16,066 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1e6060f1 - End of configuration.
01:09:16 01:09:16,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7e49ded - Registering current configuration as safe fallback point
01:09:16 01:09:16,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 298 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:09:16
01:09:16 lifecycle.test-compile:
01:09:16 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_420328800.tmp
01:09:16 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:09:16 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:09:16 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-75ed6e6d79-ice36-ice36 :: integration :: Thu Oct 24 01:09:12 UTC 2024
01:09:16 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:09:16 :: publishing :: omero#OmeroJava-test
01:09:16 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.jar
01:09:16 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.xml
01:09:16
01:09:16 integration:
01:09:16 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:09:16 01:09:16,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:09:16 01:09:16,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
01:09:16 01:09:16,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:09:16 01:09:16,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:09:16 01:09:16,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:09:16 01:09:16,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:09:16 01:09:16,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:09:16 01:09:16,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:09:16 01:09:16,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:09:16 01:09:16,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:09:16 01:09:16,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:09:16 01:09:16,620 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
01:09:16 01:09:16,620 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:09:16 01:09:16,620 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:09:16 01:09:16,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:09:16 01:09:16,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:09:16 01:09:16,830 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:09:16 01:09:16,831 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:09:16 01:09:16,831 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
01:09:16 01:09:16,858 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:09:16 01:09:16,859 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
01:09:16 01:09:16,860 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
01:09:16 01:09:16,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:09:18 Oct 24, 2024 1:09:18 AM ome.system.OmeroContext prepareRefresh
01:09:18 INFO: Refreshing ome.system.OmeroContext@7f8633ae: startup date [Thu Oct 24 01:09:18 UTC 2024]; root of context hierarchy
01:09:18 Oct 24, 2024 1:09:18 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
01:09:18 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
01:09:34 2624ec83-2e4c-4fe8-957f-37364d44d6a0
01:14:35 2024-10-24 01:14:35,693 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:14:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:14:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:14:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:14:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:14:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:14:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:14:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:14:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:14:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:14:35 Caused by: Ice.CommunicatorDestroyedException: null
01:14:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:14:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:14:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:14:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:14:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:14:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:14:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:14:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:14:35 ... 7 common frames omitted
01:14:52 2024-10-24 01:14:52,400 ERROR [ ome.formats.importer.ImportLibrary] (sDataset-1) Cannot link to target
01:14:55 2024-10-24 01:14:55,423 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:14:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:14:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:14:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:14:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:14:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:14:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:14:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:14:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:14:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:14:55 Caused by: Ice.CommunicatorDestroyedException: null
01:14:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:14:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:14:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:14:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:14:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:14:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:14:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:14:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:14:55 ... 7 common frames omitted
01:15:00 2024-10-24 01:15:00,825 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:15:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:15:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:15:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:15:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:15:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:15:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:15:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:15:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:15:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:15:00 Caused by: Ice.CommunicatorDestroyedException: null
01:15:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:15:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:15:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:15:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:15:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:15:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:15:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:15:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:15:00 ... 7 common frames omitted
01:15:46 2024-10-24 01:15:46,531 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:15:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:15:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:15:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:15:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:15:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:15:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:15:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:15:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:15:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:15:46 Caused by: Ice.CommunicatorDestroyedException: null
01:15:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:15:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:15:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:15:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:15:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:15:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:15:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:15:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:15:46 ... 7 common frames omitted
01:16:09 2024-10-24 01:16:09,514 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:16:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:16:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:16:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:16:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:16:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:16:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:16:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:16:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:16:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:16:09 Caused by: Ice.CommunicatorDestroyedException: null
01:16:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:16:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:16:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:16:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:16:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:16:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:16:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:16:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:16:09 ... 7 common frames omitted
01:19:07 2024-10-24 01:19:07,967 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:19:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:07 Caused by: Ice.CommunicatorDestroyedException: null
01:19:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:07 ... 7 common frames omitted
01:19:09 2024-10-24 01:19:09,085 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:09 Caused by: Ice.CommunicatorDestroyedException: null
01:19:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:09 ... 7 common frames omitted
01:19:10 2024-10-24 01:19:10,060 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:10 Caused by: Ice.CommunicatorDestroyedException: null
01:19:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:10 ... 7 common frames omitted
01:19:14 2024-10-24 01:19:14,398 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:14 Caused by: Ice.CommunicatorDestroyedException: null
01:19:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:14 ... 7 common frames omitted
01:19:15 2024-10-24 01:19:15,143 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:15 Caused by: Ice.CommunicatorDestroyedException: null
01:19:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:15 ... 7 common frames omitted
01:19:15 2024-10-24 01:19:15,764 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:15 Caused by: Ice.CommunicatorDestroyedException: null
01:19:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:15 ... 7 common frames omitted
01:19:16 2024-10-24 01:19:16,453 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:19:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:16 Caused by: Ice.CommunicatorDestroyedException: null
01:19:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:16 ... 7 common frames omitted
01:19:17 2024-10-24 01:19:17,147 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:19:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:17 Caused by: Ice.CommunicatorDestroyedException: null
01:19:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:17 ... 7 common frames omitted
01:19:17 2024-10-24 01:19:17,753 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:17 Caused by: Ice.CommunicatorDestroyedException: null
01:19:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:17 ... 7 common frames omitted
01:19:18 2024-10-24 01:19:18,420 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:18 Caused by: Ice.CommunicatorDestroyedException: null
01:19:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:18 ... 7 common frames omitted
01:19:19 2024-10-24 01:19:19,159 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:19 Caused by: Ice.CommunicatorDestroyedException: null
01:19:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:19 ... 7 common frames omitted
01:19:20 2024-10-24 01:19:20,051 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:19:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:20 Caused by: Ice.CommunicatorDestroyedException: null
01:19:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:20 ... 7 common frames omitted
01:19:20 2024-10-24 01:19:20,873 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:19:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:20 Caused by: Ice.CommunicatorDestroyedException: null
01:19:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:20 ... 7 common frames omitted
01:19:21 2024-10-24 01:19:21,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:21 Caused by: Ice.CommunicatorDestroyedException: null
01:19:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:21 ... 7 common frames omitted
01:19:22 2024-10-24 01:19:22,172 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:22 Caused by: Ice.CommunicatorDestroyedException: null
01:19:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:22 ... 7 common frames omitted
01:19:22 2024-10-24 01:19:22,856 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:22 Caused by: Ice.CommunicatorDestroyedException: null
01:19:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:22 ... 7 common frames omitted
01:19:23 2024-10-24 01:19:23,553 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:23 Caused by: Ice.CommunicatorDestroyedException: null
01:19:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:23 ... 7 common frames omitted
01:19:24 2024-10-24 01:19:24,177 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:24 Caused by: Ice.CommunicatorDestroyedException: null
01:19:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:24 ... 7 common frames omitted
01:19:24 2024-10-24 01:19:24,925 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:24 Caused by: Ice.CommunicatorDestroyedException: null
01:19:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:24 ... 7 common frames omitted
01:19:25 2024-10-24 01:19:25,608 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:19:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:25 Caused by: Ice.CommunicatorDestroyedException: null
01:19:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:25 ... 7 common frames omitted
01:19:26 2024-10-24 01:19:26,543 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:19:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:26 Caused by: Ice.CommunicatorDestroyedException: null
01:19:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:26 ... 7 common frames omitted
01:19:27 2024-10-24 01:19:27,231 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:27 Caused by: Ice.CommunicatorDestroyedException: null
01:19:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:27 ... 7 common frames omitted
01:19:27 2024-10-24 01:19:27,964 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:19:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:27 Caused by: Ice.CommunicatorDestroyedException: null
01:19:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:27 ... 7 common frames omitted
01:19:28 2024-10-24 01:19:28,598 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:19:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:28 Caused by: Ice.CommunicatorDestroyedException: null
01:19:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:28 ... 7 common frames omitted
01:19:29 2024-10-24 01:19:29,257 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:19:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:29 Caused by: Ice.CommunicatorDestroyedException: null
01:19:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:29 ... 7 common frames omitted
01:19:30 2024-10-24 01:19:30,078 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:30 Caused by: Ice.CommunicatorDestroyedException: null
01:19:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:30 ... 7 common frames omitted
01:19:30 2024-10-24 01:19:30,754 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:30 Caused by: Ice.CommunicatorDestroyedException: null
01:19:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:30 ... 7 common frames omitted
01:19:31 2024-10-24 01:19:31,429 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:31 Caused by: Ice.CommunicatorDestroyedException: null
01:19:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:31 ... 7 common frames omitted
01:19:32 2024-10-24 01:19:32,369 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:32 Caused by: Ice.CommunicatorDestroyedException: null
01:19:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:32 ... 7 common frames omitted
01:19:33 2024-10-24 01:19:33,160 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:19:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:33 Caused by: Ice.CommunicatorDestroyedException: null
01:19:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:33 ... 7 common frames omitted
01:19:34 2024-10-24 01:19:34,015 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:19:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:34 Caused by: Ice.CommunicatorDestroyedException: null
01:19:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:34 ... 7 common frames omitted
01:19:34 2024-10-24 01:19:34,880 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:34 Caused by: Ice.CommunicatorDestroyedException: null
01:19:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:34 ... 7 common frames omitted
01:19:35 2024-10-24 01:19:35,865 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:19:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:35 Caused by: Ice.CommunicatorDestroyedException: null
01:19:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:35 ... 7 common frames omitted
01:19:36 2024-10-24 01:19:36,940 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:19:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:36 Caused by: Ice.CommunicatorDestroyedException: null
01:19:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:36 ... 7 common frames omitted
01:19:37 2024-10-24 01:19:37,912 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:19:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:37 Caused by: Ice.CommunicatorDestroyedException: null
01:19:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:37 ... 7 common frames omitted
01:19:38 2024-10-24 01:19:38,870 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:38 Caused by: Ice.CommunicatorDestroyedException: null
01:19:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:38 ... 7 common frames omitted
01:19:40 2024-10-24 01:19:40,077 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:40 Caused by: Ice.CommunicatorDestroyedException: null
01:19:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:40 ... 7 common frames omitted
01:19:40 2024-10-24 01:19:40,948 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:40 Caused by: Ice.CommunicatorDestroyedException: null
01:19:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:40 ... 7 common frames omitted
01:19:41 2024-10-24 01:19:41,776 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:41 Caused by: Ice.CommunicatorDestroyedException: null
01:19:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:41 ... 7 common frames omitted
01:19:45 2024-10-24 01:19:45,903 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:19:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:45 Caused by: Ice.CommunicatorDestroyedException: null
01:19:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:45 ... 7 common frames omitted
01:19:47 2024-10-24 01:19:47,028 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:19:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:47 Caused by: Ice.CommunicatorDestroyedException: null
01:19:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:47 ... 7 common frames omitted
01:19:48 2024-10-24 01:19:48,862 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:19:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:48 Caused by: Ice.CommunicatorDestroyedException: null
01:19:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:48 ... 7 common frames omitted
01:19:50 2024-10-24 01:19:50,164 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:50 Caused by: Ice.CommunicatorDestroyedException: null
01:19:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:50 ... 7 common frames omitted
01:19:51 2024-10-24 01:19:51,054 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:19:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:51 Caused by: Ice.CommunicatorDestroyedException: null
01:19:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:51 ... 7 common frames omitted
01:19:52 2024-10-24 01:19:52,385 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:52 Caused by: Ice.CommunicatorDestroyedException: null
01:19:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:52 ... 7 common frames omitted
01:19:52 2024-10-24 01:19:52,882 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:19:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:52 Caused by: Ice.CommunicatorDestroyedException: null
01:19:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:52 ... 7 common frames omitted
01:19:54 2024-10-24 01:19:54,277 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:19:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:54 Caused by: Ice.CommunicatorDestroyedException: null
01:19:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:54 ... 7 common frames omitted
01:19:55 2024-10-24 01:19:55,191 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:55 Caused by: Ice.CommunicatorDestroyedException: null
01:19:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:55 ... 7 common frames omitted
01:19:57 2024-10-24 01:19:57,385 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:19:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:57 Caused by: Ice.CommunicatorDestroyedException: null
01:19:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:57 ... 7 common frames omitted
01:19:58 2024-10-24 01:19:58,774 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:19:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:58 Caused by: Ice.CommunicatorDestroyedException: null
01:19:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:58 ... 7 common frames omitted
01:20:00 2024-10-24 01:20:00,149 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:20:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:00 Caused by: Ice.CommunicatorDestroyedException: null
01:20:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:00 ... 7 common frames omitted
01:20:03 2024-10-24 01:20:03,420 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:20:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:03 Caused by: Ice.CommunicatorDestroyedException: null
01:20:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:03 ... 7 common frames omitted
01:20:08 2024-10-24 01:20:08,118 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:20:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:08 Caused by: Ice.CommunicatorDestroyedException: null
01:20:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:08 ... 7 common frames omitted
01:20:09 2024-10-24 01:20:09,100 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:20:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:09 Caused by: Ice.CommunicatorDestroyedException: null
01:20:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:09 ... 7 common frames omitted
01:20:09 2024-10-24 01:20:09,884 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:20:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:09 Caused by: Ice.CommunicatorDestroyedException: null
01:20:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:09 ... 7 common frames omitted
01:20:11 2024-10-24 01:20:11,114 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:20:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:11 Caused by: Ice.CommunicatorDestroyedException: null
01:20:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:11 ... 7 common frames omitted
01:21:45 2024-10-24 01:21:45,689 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:21:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:45 Caused by: Ice.CommunicatorDestroyedException: null
01:21:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:45 ... 7 common frames omitted
01:21:47 2024-10-24 01:21:47,591 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:21:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:47 Caused by: Ice.CommunicatorDestroyedException: null
01:21:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:47 ... 7 common frames omitted
01:21:49 2024-10-24 01:21:49,466 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:21:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:49 Caused by: Ice.CommunicatorDestroyedException: null
01:21:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:49 ... 7 common frames omitted
01:21:51 2024-10-24 01:21:51,641 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:21:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:51 Caused by: Ice.CommunicatorDestroyedException: null
01:21:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:51 ... 7 common frames omitted
01:21:54 2024-10-24 01:21:54,061 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:21:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:54 Caused by: Ice.CommunicatorDestroyedException: null
01:21:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:54 ... 7 common frames omitted
01:21:55 2024-10-24 01:21:55,638 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:21:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:55 Caused by: Ice.CommunicatorDestroyedException: null
01:21:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:55 ... 7 common frames omitted
01:21:57 2024-10-24 01:21:57,507 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:21:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:57 Caused by: Ice.CommunicatorDestroyedException: null
01:21:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:57 ... 7 common frames omitted
01:21:59 2024-10-24 01:21:59,009 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:21:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:21:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:21:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:21:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:21:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:21:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:21:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:21:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:21:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:21:59 Caused by: Ice.CommunicatorDestroyedException: null
01:21:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:21:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:21:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:21:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:21:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:21:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:21:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:21:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:21:59 ... 7 common frames omitted
01:25:35 2024-10-24 01:25:35,264 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:25:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:35 Caused by: Ice.CommunicatorDestroyedException: null
01:25:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:35 ... 7 common frames omitted
01:25:36 2024-10-24 01:25:36,181 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:25:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:36 Caused by: Ice.CommunicatorDestroyedException: null
01:25:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:36 ... 7 common frames omitted
01:25:38 2024-10-24 01:25:38,128 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:25:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:38 Caused by: Ice.CommunicatorDestroyedException: null
01:25:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:38 ... 7 common frames omitted
01:25:40 2024-10-24 01:25:40,048 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:25:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:40 Caused by: Ice.CommunicatorDestroyedException: null
01:25:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:40 ... 7 common frames omitted
01:25:40 2024-10-24 01:25:40,497 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:25:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:40 Caused by: Ice.CommunicatorDestroyedException: null
01:25:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:40 ... 7 common frames omitted
01:25:42 2024-10-24 01:25:42,158 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:25:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:42 Caused by: Ice.CommunicatorDestroyedException: null
01:25:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:42 ... 7 common frames omitted
01:25:44 2024-10-24 01:25:44,090 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:25:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:44 Caused by: Ice.CommunicatorDestroyedException: null
01:25:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:44 ... 7 common frames omitted
01:25:46 2024-10-24 01:25:46,054 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:25:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:46 Caused by: Ice.CommunicatorDestroyedException: null
01:25:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:46 ... 7 common frames omitted
01:25:48 2024-10-24 01:25:48,890 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:25:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:48 Caused by: Ice.CommunicatorDestroyedException: null
01:25:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:48 ... 7 common frames omitted
01:25:50 2024-10-24 01:25:50,677 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:25:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:50 Caused by: Ice.CommunicatorDestroyedException: null
01:25:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:50 ... 7 common frames omitted
01:25:52 2024-10-24 01:25:52,988 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:25:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:52 Caused by: Ice.CommunicatorDestroyedException: null
01:25:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:52 ... 7 common frames omitted
01:25:54 2024-10-24 01:25:54,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:25:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:54 Caused by: Ice.CommunicatorDestroyedException: null
01:25:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:54 ... 7 common frames omitted
01:26:46 2024-10-24 01:26:46,547 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:26:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:46 Caused by: Ice.CommunicatorDestroyedException: null
01:26:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:46 ... 7 common frames omitted
01:26:48 2024-10-24 01:26:48,707 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:26:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:48 Caused by: Ice.CommunicatorDestroyedException: null
01:26:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:48 ... 7 common frames omitted
01:26:50 2024-10-24 01:26:50,775 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:26:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:50 Caused by: Ice.CommunicatorDestroyedException: null
01:26:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:50 ... 7 common frames omitted
01:26:52 2024-10-24 01:26:52,775 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:26:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:52 Caused by: Ice.CommunicatorDestroyedException: null
01:26:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:52 ... 7 common frames omitted
01:26:54 2024-10-24 01:26:54,847 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:26:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:54 Caused by: Ice.CommunicatorDestroyedException: null
01:26:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:54 ... 7 common frames omitted
01:26:58 2024-10-24 01:26:58,408 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:26:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:58 Caused by: Ice.CommunicatorDestroyedException: null
01:26:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:58 ... 7 common frames omitted
01:27:01 2024-10-24 01:27:01,778 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:27:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:01 Caused by: Ice.CommunicatorDestroyedException: null
01:27:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:01 ... 7 common frames omitted
01:27:05 2024-10-24 01:27:05,175 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:27:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:05 Caused by: Ice.CommunicatorDestroyedException: null
01:27:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:05 ... 7 common frames omitted
01:27:08 2024-10-24 01:27:08,412 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:27:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:08 Caused by: Ice.CommunicatorDestroyedException: null
01:27:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:08 ... 7 common frames omitted
01:27:11 2024-10-24 01:27:11,339 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:27:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:11 Caused by: Ice.CommunicatorDestroyedException: null
01:27:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:11 ... 7 common frames omitted
01:27:13 2024-10-24 01:27:13,782 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:27:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:13 Caused by: Ice.CommunicatorDestroyedException: null
01:27:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:13 ... 7 common frames omitted
01:27:16 2024-10-24 01:27:16,327 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:27:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:16 Caused by: Ice.CommunicatorDestroyedException: null
01:27:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:16 ... 7 common frames omitted
01:27:18 2024-10-24 01:27:18,638 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:27:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:18 Caused by: Ice.CommunicatorDestroyedException: null
01:27:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:18 ... 7 common frames omitted
01:27:21 2024-10-24 01:27:21,087 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:27:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:21 Caused by: Ice.CommunicatorDestroyedException: null
01:27:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:21 ... 7 common frames omitted
01:27:23 2024-10-24 01:27:23,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:27:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:23 Caused by: Ice.CommunicatorDestroyedException: null
01:27:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:23 ... 7 common frames omitted
01:27:26 2024-10-24 01:27:26,162 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:27:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:26 Caused by: Ice.CommunicatorDestroyedException: null
01:27:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:26 ... 7 common frames omitted
01:27:28 2024-10-24 01:27:28,769 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:27:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:28 Caused by: Ice.CommunicatorDestroyedException: null
01:27:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:28 ... 7 common frames omitted
01:27:31 2024-10-24 01:27:31,294 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:27:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:31 Caused by: Ice.CommunicatorDestroyedException: null
01:27:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:31 ... 7 common frames omitted
01:27:34 2024-10-24 01:27:34,044 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:27:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:34 Caused by: Ice.CommunicatorDestroyedException: null
01:27:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:34 ... 7 common frames omitted
01:27:36 2024-10-24 01:27:36,578 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:27:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:36 Caused by: Ice.CommunicatorDestroyedException: null
01:27:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:36 ... 7 common frames omitted
01:27:39 2024-10-24 01:27:39,501 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:27:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:39 Caused by: Ice.CommunicatorDestroyedException: null
01:27:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:39 ... 7 common frames omitted
01:27:43 2024-10-24 01:27:43,613 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:27:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:43 Caused by: Ice.CommunicatorDestroyedException: null
01:27:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:43 ... 7 common frames omitted
01:27:48 2024-10-24 01:27:48,540 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:27:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:48 Caused by: Ice.CommunicatorDestroyedException: null
01:27:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:48 ... 7 common frames omitted
01:27:52 2024-10-24 01:27:52,654 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:27:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:52 Caused by: Ice.CommunicatorDestroyedException: null
01:27:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:52 ... 7 common frames omitted
01:27:56 2024-10-24 01:27:56,650 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:27:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:56 Caused by: Ice.CommunicatorDestroyedException: null
01:27:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:56 ... 7 common frames omitted
01:27:59 2024-10-24 01:27:59,308 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:27:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:59 Caused by: Ice.CommunicatorDestroyedException: null
01:27:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:59 ... 7 common frames omitted
01:28:01 2024-10-24 01:28:01,900 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:28:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:01 Caused by: Ice.CommunicatorDestroyedException: null
01:28:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:01 ... 7 common frames omitted
01:28:04 2024-10-24 01:28:04,411 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:28:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:04 Caused by: Ice.CommunicatorDestroyedException: null
01:28:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:04 ... 7 common frames omitted
01:28:07 2024-10-24 01:28:07,042 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:28:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:07 Caused by: Ice.CommunicatorDestroyedException: null
01:28:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:07 ... 7 common frames omitted
01:28:09 2024-10-24 01:28:09,731 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:28:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:09 Caused by: Ice.CommunicatorDestroyedException: null
01:28:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:09 ... 7 common frames omitted
01:28:12 2024-10-24 01:28:12,466 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:12 Caused by: Ice.CommunicatorDestroyedException: null
01:28:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:12 ... 7 common frames omitted
01:28:15 2024-10-24 01:28:15,085 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:15 Caused by: Ice.CommunicatorDestroyedException: null
01:28:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:15 ... 7 common frames omitted
01:28:17 2024-10-24 01:28:17,584 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:17 Caused by: Ice.CommunicatorDestroyedException: null
01:28:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:17 ... 7 common frames omitted
01:28:20 2024-10-24 01:28:20,399 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:20 Caused by: Ice.CommunicatorDestroyedException: null
01:28:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:20 ... 7 common frames omitted
01:28:23 2024-10-24 01:28:23,020 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:23 Caused by: Ice.CommunicatorDestroyedException: null
01:28:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:23 ... 7 common frames omitted
01:28:25 2024-10-24 01:28:25,652 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:25 Caused by: Ice.CommunicatorDestroyedException: null
01:28:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:25 ... 7 common frames omitted
01:28:28 2024-10-24 01:28:28,449 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:28:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:28 Caused by: Ice.CommunicatorDestroyedException: null
01:28:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:28 ... 7 common frames omitted
01:28:33 2024-10-24 01:28:33,222 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:28:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:33 Caused by: Ice.CommunicatorDestroyedException: null
01:28:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:33 ... 7 common frames omitted
01:28:36 2024-10-24 01:28:36,903 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:28:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:36 Caused by: Ice.CommunicatorDestroyedException: null
01:28:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:36 ... 7 common frames omitted
01:28:40 2024-10-24 01:28:40,755 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:28:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:40 Caused by: Ice.CommunicatorDestroyedException: null
01:28:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:40 ... 7 common frames omitted
01:28:45 2024-10-24 01:28:45,394 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:45 Caused by: Ice.CommunicatorDestroyedException: null
01:28:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:45 ... 7 common frames omitted
01:28:48 2024-10-24 01:28:48,238 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:48 Caused by: Ice.CommunicatorDestroyedException: null
01:28:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:48 ... 7 common frames omitted
01:28:51 2024-10-24 01:28:51,196 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:51 Caused by: Ice.CommunicatorDestroyedException: null
01:28:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:51 ... 7 common frames omitted
01:28:53 2024-10-24 01:28:53,547 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:53 Caused by: Ice.CommunicatorDestroyedException: null
01:28:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:53 ... 7 common frames omitted
01:28:56 2024-10-24 01:28:56,016 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:56 Caused by: Ice.CommunicatorDestroyedException: null
01:28:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:56 ... 7 common frames omitted
01:28:58 2024-10-24 01:28:58,772 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:58 Caused by: Ice.CommunicatorDestroyedException: null
01:28:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:58 ... 7 common frames omitted
01:29:01 2024-10-24 01:29:01,444 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:29:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:01 Caused by: Ice.CommunicatorDestroyedException: null
01:29:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:01 ... 7 common frames omitted
01:29:03 2024-10-24 01:29:03,877 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:29:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:03 Caused by: Ice.CommunicatorDestroyedException: null
01:29:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:03 ... 7 common frames omitted
01:29:33 2024-10-24 01:29:33,046 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:29:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:33 Caused by: Ice.CommunicatorDestroyedException: null
01:29:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:33 ... 7 common frames omitted
01:29:37 2024-10-24 01:29:37,810 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:29:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:37 Caused by: Ice.CommunicatorDestroyedException: null
01:29:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:37 ... 7 common frames omitted
01:29:41 2024-10-24 01:29:41,619 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:29:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:41 Caused by: Ice.CommunicatorDestroyedException: null
01:29:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:41 ... 7 common frames omitted
01:29:45 2024-10-24 01:29:45,315 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:29:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:45 Caused by: Ice.CommunicatorDestroyedException: null
01:29:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:45 ... 7 common frames omitted
01:29:48 2024-10-24 01:29:48,840 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:29:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:48 Caused by: Ice.CommunicatorDestroyedException: null
01:29:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:48 ... 7 common frames omitted
01:29:52 2024-10-24 01:29:52,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:29:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:52 Caused by: Ice.CommunicatorDestroyedException: null
01:29:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:52 ... 7 common frames omitted
01:29:56 2024-10-24 01:29:56,084 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:29:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:56 Caused by: Ice.CommunicatorDestroyedException: null
01:29:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:56 ... 7 common frames omitted
01:29:59 2024-10-24 01:29:59,921 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:29:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:59 Caused by: Ice.CommunicatorDestroyedException: null
01:29:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:59 ... 7 common frames omitted
01:30:03 2024-10-24 01:30:03,534 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:30:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:03 Caused by: Ice.CommunicatorDestroyedException: null
01:30:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:03 ... 7 common frames omitted
01:30:05 2024-10-24 01:30:05,921 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:30:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:05 Caused by: Ice.CommunicatorDestroyedException: null
01:30:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:05 ... 7 common frames omitted
01:30:08 2024-10-24 01:30:08,077 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:30:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:08 Caused by: Ice.CommunicatorDestroyedException: null
01:30:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:08 ... 7 common frames omitted
01:30:10 2024-10-24 01:30:10,258 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:30:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:10 Caused by: Ice.CommunicatorDestroyedException: null
01:30:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:10 ... 7 common frames omitted
01:30:13 2024-10-24 01:30:13,400 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:30:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:13 Caused by: Ice.CommunicatorDestroyedException: null
01:30:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:13 ... 7 common frames omitted
01:30:15 2024-10-24 01:30:15,784 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:30:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:15 Caused by: Ice.CommunicatorDestroyedException: null
01:30:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:15 ... 7 common frames omitted
01:30:18 2024-10-24 01:30:18,656 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:30:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:18 Caused by: Ice.CommunicatorDestroyedException: null
01:30:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:18 ... 7 common frames omitted
01:30:21 2024-10-24 01:30:21,555 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:30:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:21 Caused by: Ice.CommunicatorDestroyedException: null
01:30:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:21 ... 7 common frames omitted
01:30:24 2024-10-24 01:30:24,473 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:30:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:24 Caused by: Ice.CommunicatorDestroyedException: null
01:30:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:24 ... 7 common frames omitted
01:30:28 2024-10-24 01:30:28,884 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:30:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:28 Caused by: Ice.CommunicatorDestroyedException: null
01:30:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:28 ... 7 common frames omitted
01:30:33 2024-10-24 01:30:33,608 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:30:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:33 Caused by: Ice.CommunicatorDestroyedException: null
01:30:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:33 ... 7 common frames omitted
01:30:37 2024-10-24 01:30:37,605 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:30:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:37 Caused by: Ice.CommunicatorDestroyedException: null
01:30:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:37 ... 7 common frames omitted
01:30:42 2024-10-24 01:30:42,561 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:30:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:42 Caused by: Ice.CommunicatorDestroyedException: null
01:30:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:42 ... 7 common frames omitted
01:30:46 2024-10-24 01:30:46,797 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:30:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:46 Caused by: Ice.CommunicatorDestroyedException: null
01:30:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:46 ... 7 common frames omitted
01:30:50 2024-10-24 01:30:50,990 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:30:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:50 Caused by: Ice.CommunicatorDestroyedException: null
01:30:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:50 ... 7 common frames omitted
01:30:55 2024-10-24 01:30:55,153 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:30:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:55 Caused by: Ice.CommunicatorDestroyedException: null
01:30:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:55 ... 7 common frames omitted
01:32:21 2024-10-24 01:32:21,229 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:21 Caused by: Ice.CommunicatorDestroyedException: null
01:32:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:21 ... 7 common frames omitted
01:32:24 2024-10-24 01:32:24,179 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:24 Caused by: Ice.CommunicatorDestroyedException: null
01:32:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:24 ... 7 common frames omitted
01:32:27 2024-10-24 01:32:27,073 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:27 Caused by: Ice.CommunicatorDestroyedException: null
01:32:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:27 ... 7 common frames omitted
01:32:30 2024-10-24 01:32:30,068 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:30 Caused by: Ice.CommunicatorDestroyedException: null
01:32:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:30 ... 7 common frames omitted
01:32:32 2024-10-24 01:32:32,778 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:32 Caused by: Ice.CommunicatorDestroyedException: null
01:32:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:32 ... 7 common frames omitted
01:32:37 2024-10-24 01:32:37,078 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:37 Caused by: Ice.CommunicatorDestroyedException: null
01:32:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:37 ... 7 common frames omitted
01:32:41 2024-10-24 01:32:41,366 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:41 Caused by: Ice.CommunicatorDestroyedException: null
01:32:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:41 ... 7 common frames omitted
01:32:46 2024-10-24 01:32:46,027 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:46 Caused by: Ice.CommunicatorDestroyedException: null
01:32:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:46 ... 7 common frames omitted
01:32:50 2024-10-24 01:32:50,433 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:50 Caused by: Ice.CommunicatorDestroyedException: null
01:32:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:50 ... 7 common frames omitted
01:32:55 2024-10-24 01:32:55,096 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:55 Caused by: Ice.CommunicatorDestroyedException: null
01:32:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:55 ... 7 common frames omitted
01:32:59 2024-10-24 01:32:59,437 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:59 Caused by: Ice.CommunicatorDestroyedException: null
01:32:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:59 ... 7 common frames omitted
01:33:04 2024-10-24 01:33:04,716 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:33:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:04 Caused by: Ice.CommunicatorDestroyedException: null
01:33:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:04 ... 7 common frames omitted
01:33:09 2024-10-24 01:33:09,421 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:33:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:09 Caused by: Ice.CommunicatorDestroyedException: null
01:33:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:09 ... 7 common frames omitted
01:33:16 2024-10-24 01:33:16,258 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:33:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:16 Caused by: Ice.CommunicatorDestroyedException: null
01:33:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:16 ... 7 common frames omitted
01:33:22 2024-10-24 01:33:22,616 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:33:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:22 Caused by: Ice.CommunicatorDestroyedException: null
01:33:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:22 ... 7 common frames omitted
01:33:29 2024-10-24 01:33:29,100 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:29 Caused by: Ice.CommunicatorDestroyedException: null
01:33:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:29 ... 7 common frames omitted
01:33:35 2024-10-24 01:33:35,108 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:35 Caused by: Ice.CommunicatorDestroyedException: null
01:33:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:35 ... 7 common frames omitted
01:33:36 2024-10-24 01:33:36,420 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:33:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:36 Caused by: Ice.CommunicatorDestroyedException: null
01:33:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:36 ... 7 common frames omitted
01:33:37 2024-10-24 01:33:37,639 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:33:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:37 Caused by: Ice.CommunicatorDestroyedException: null
01:33:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:37 ... 7 common frames omitted
01:33:38 2024-10-24 01:33:38,869 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:33:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:38 Caused by: Ice.CommunicatorDestroyedException: null
01:33:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:38 ... 7 common frames omitted
01:33:40 2024-10-24 01:33:40,133 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:33:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:40 Caused by: Ice.CommunicatorDestroyedException: null
01:33:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:40 ... 7 common frames omitted
01:33:41 2024-10-24 01:33:41,335 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:33:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:41 Caused by: Ice.CommunicatorDestroyedException: null
01:33:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:41 ... 7 common frames omitted
01:33:42 2024-10-24 01:33:42,707 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:33:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:42 Caused by: Ice.CommunicatorDestroyedException: null
01:33:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:42 ... 7 common frames omitted
01:33:43 2024-10-24 01:33:43,977 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:33:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:43 Caused by: Ice.CommunicatorDestroyedException: null
01:33:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:43 ... 7 common frames omitted
01:33:45 2024-10-24 01:33:45,255 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:33:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:45 Caused by: Ice.CommunicatorDestroyedException: null
01:33:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:45 ... 7 common frames omitted
01:33:46 2024-10-24 01:33:46,432 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:46 Caused by: Ice.CommunicatorDestroyedException: null
01:33:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:46 ... 7 common frames omitted
01:33:47 2024-10-24 01:33:47,662 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:47 Caused by: Ice.CommunicatorDestroyedException: null
01:33:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:47 ... 7 common frames omitted
01:33:48 2024-10-24 01:33:48,872 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:33:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:48 Caused by: Ice.CommunicatorDestroyedException: null
01:33:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:48 ... 7 common frames omitted
01:33:50 2024-10-24 01:33:50,100 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:33:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:50 Caused by: Ice.CommunicatorDestroyedException: null
01:33:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:50 ... 7 common frames omitted
01:33:51 2024-10-24 01:33:51,319 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:33:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:51 Caused by: Ice.CommunicatorDestroyedException: null
01:33:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:51 ... 7 common frames omitted
01:33:52 2024-10-24 01:33:52,550 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:33:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:52 Caused by: Ice.CommunicatorDestroyedException: null
01:33:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:52 ... 7 common frames omitted
01:33:53 2024-10-24 01:33:53,782 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:33:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:53 Caused by: Ice.CommunicatorDestroyedException: null
01:33:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:53 ... 7 common frames omitted
01:33:55 2024-10-24 01:33:55,068 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:33:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:55 Caused by: Ice.CommunicatorDestroyedException: null
01:33:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:55 ... 7 common frames omitted
01:33:56 2024-10-24 01:33:56,245 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:33:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:56 Caused by: Ice.CommunicatorDestroyedException: null
01:33:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:56 ... 7 common frames omitted
01:33:57 2024-10-24 01:33:57,443 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:33:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:57 Caused by: Ice.CommunicatorDestroyedException: null
01:33:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:57 ... 7 common frames omitted
01:33:58 2024-10-24 01:33:58,642 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:58 Caused by: Ice.CommunicatorDestroyedException: null
01:33:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:58 ... 7 common frames omitted
01:33:59 2024-10-24 01:33:59,889 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:59 Caused by: Ice.CommunicatorDestroyedException: null
01:33:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:59 ... 7 common frames omitted
01:34:01 2024-10-24 01:34:01,215 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:34:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:01 Caused by: Ice.CommunicatorDestroyedException: null
01:34:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:01 ... 7 common frames omitted
01:34:02 2024-10-24 01:34:02,568 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:34:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:02 Caused by: Ice.CommunicatorDestroyedException: null
01:34:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:02 ... 7 common frames omitted
01:34:04 2024-10-24 01:34:04,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:34:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:04 Caused by: Ice.CommunicatorDestroyedException: null
01:34:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:04 ... 7 common frames omitted
01:34:05 2024-10-24 01:34:05,393 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:34:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:05 Caused by: Ice.CommunicatorDestroyedException: null
01:34:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:05 ... 7 common frames omitted
01:34:06 2024-10-24 01:34:06,682 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:34:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:06 Caused by: Ice.CommunicatorDestroyedException: null
01:34:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:06 ... 7 common frames omitted
01:34:08 2024-10-24 01:34:08,116 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:34:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:08 Caused by: Ice.CommunicatorDestroyedException: null
01:34:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:08 ... 7 common frames omitted
01:34:09 2024-10-24 01:34:09,349 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:34:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:09 Caused by: Ice.CommunicatorDestroyedException: null
01:34:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:09 ... 7 common frames omitted
01:34:10 2024-10-24 01:34:10,517 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:34:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:10 Caused by: Ice.CommunicatorDestroyedException: null
01:34:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:10 ... 7 common frames omitted
01:34:11 2024-10-24 01:34:11,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:34:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:11 Caused by: Ice.CommunicatorDestroyedException: null
01:34:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:11 ... 7 common frames omitted
01:34:13 2024-10-24 01:34:13,081 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:34:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:13 Caused by: Ice.CommunicatorDestroyedException: null
01:34:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:13 ... 7 common frames omitted
01:34:14 2024-10-24 01:34:14,294 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:34:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:14 Caused by: Ice.CommunicatorDestroyedException: null
01:34:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:14 ... 7 common frames omitted
01:34:15 2024-10-24 01:34:15,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:34:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:15 Caused by: Ice.CommunicatorDestroyedException: null
01:34:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:15 ... 7 common frames omitted
01:34:18 2024-10-24 01:34:18,335 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:34:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:18 Caused by: Ice.CommunicatorDestroyedException: null
01:34:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:18 ... 7 common frames omitted
01:34:21 2024-10-24 01:34:21,007 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:34:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:21 Caused by: Ice.CommunicatorDestroyedException: null
01:34:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:21 ... 7 common frames omitted
01:34:23 2024-10-24 01:34:23,573 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:34:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:23 Caused by: Ice.CommunicatorDestroyedException: null
01:34:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:23 ... 7 common frames omitted
01:34:26 2024-10-24 01:34:26,046 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:34:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:26 Caused by: Ice.CommunicatorDestroyedException: null
01:34:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:26 ... 7 common frames omitted
01:34:30 2024-10-24 01:34:30,659 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:34:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:30 Caused by: Ice.CommunicatorDestroyedException: null
01:34:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:30 ... 7 common frames omitted
01:34:34 2024-10-24 01:34:34,984 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:34:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:34 Caused by: Ice.CommunicatorDestroyedException: null
01:34:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:34 ... 7 common frames omitted
01:34:38 2024-10-24 01:34:38,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:34:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:38 Caused by: Ice.CommunicatorDestroyedException: null
01:34:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:38 ... 7 common frames omitted
01:34:53 2024-10-24 01:34:53,579 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:34:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:53 Caused by: Ice.CommunicatorDestroyedException: null
01:34:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:53 ... 7 common frames omitted
01:34:56 2024-10-24 01:34:56,010 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:34:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:56 Caused by: Ice.CommunicatorDestroyedException: null
01:34:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:56 ... 7 common frames omitted
01:34:58 2024-10-24 01:34:58,454 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:34:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:34:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:34:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:34:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:34:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:34:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:34:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:34:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:34:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:34:58 Caused by: Ice.CommunicatorDestroyedException: null
01:34:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:34:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:34:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:34:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:34:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:34:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:34:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:34:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:34:58 ... 7 common frames omitted
01:35:00 2024-10-24 01:35:00,821 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:35:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:35:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:35:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:35:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:35:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:35:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:35:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:35:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:35:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:35:00 Caused by: Ice.CommunicatorDestroyedException: null
01:35:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:35:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:35:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:35:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:35:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:35:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:35:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:35:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:35:00 ... 7 common frames omitted
01:39:13 2024-10-24 01:39:13,898 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:39:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:13 Caused by: Ice.CommunicatorDestroyedException: null
01:39:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:13 ... 7 common frames omitted
01:39:15 2024-10-24 01:39:15,476 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:39:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:15 Caused by: Ice.CommunicatorDestroyedException: null
01:39:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:15 ... 7 common frames omitted
01:39:16 2024-10-24 01:39:16,195 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:39:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:16 Caused by: Ice.CommunicatorDestroyedException: null
01:39:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:16 ... 7 common frames omitted
01:39:16 2024-10-24 01:39:16,947 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:39:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:16 Caused by: Ice.CommunicatorDestroyedException: null
01:39:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:16 ... 7 common frames omitted
01:39:17 2024-10-24 01:39:17,486 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:39:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:17 Caused by: Ice.CommunicatorDestroyedException: null
01:39:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:17 ... 7 common frames omitted
01:39:18 2024-10-24 01:39:18,715 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:39:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:18 Caused by: Ice.CommunicatorDestroyedException: null
01:39:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:18 ... 7 common frames omitted
01:39:19 2024-10-24 01:39:19,652 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:39:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:19 Caused by: Ice.CommunicatorDestroyedException: null
01:39:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:19 ... 7 common frames omitted
01:39:20 2024-10-24 01:39:20,798 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:39:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:20 Caused by: Ice.CommunicatorDestroyedException: null
01:39:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:20 ... 7 common frames omitted
01:39:21 2024-10-24 01:39:21,365 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:39:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:21 Caused by: Ice.CommunicatorDestroyedException: null
01:39:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:21 ... 7 common frames omitted
01:39:21 2024-10-24 01:39:21,910 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:39:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:21 Caused by: Ice.CommunicatorDestroyedException: null
01:39:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:21 ... 7 common frames omitted
01:39:22 2024-10-24 01:39:22,435 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:39:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:22 Caused by: Ice.CommunicatorDestroyedException: null
01:39:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:22 ... 7 common frames omitted
01:39:24 2024-10-24 01:39:24,830 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:39:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:39:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:39:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:39:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:39:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:39:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:39:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:39:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:39:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:39:24 Caused by: Ice.CommunicatorDestroyedException: null
01:39:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:39:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:39:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:39:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:39:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:39:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:39:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:39:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:39:24 ... 7 common frames omitted
01:40:40 2024-10-24 01:40:40,090 ERROR [ ome.system.UpgradeCheck] (Response-1) Error reading from url: http://upgrade.openmicroscopy.org.uk?version=test;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
01:42:12 2024-10-24 01:42:12,538 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:42:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:12 Caused by: Ice.CommunicatorDestroyedException: null
01:42:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:12 ... 7 common frames omitted
01:42:17 2024-10-24 01:42:17,716 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:17 Caused by: Ice.CommunicatorDestroyedException: null
01:42:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:17 ... 7 common frames omitted
01:42:26 2024-10-24 01:42:26,506 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:42:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:26 Caused by: Ice.CommunicatorDestroyedException: null
01:42:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:26 ... 7 common frames omitted
01:42:48 2024-10-24 01:42:48,201 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:48 Caused by: Ice.CommunicatorDestroyedException: null
01:42:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:48 ... 7 common frames omitted
01:42:50 2024-10-24 01:42:50,307 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:50 Caused by: Ice.CommunicatorDestroyedException: null
01:42:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:50 ... 7 common frames omitted
01:42:52 2024-10-24 01:42:52,083 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:52 Caused by: Ice.CommunicatorDestroyedException: null
01:42:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:52 ... 7 common frames omitted
01:42:53 2024-10-24 01:42:53,889 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:42:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:53 Caused by: Ice.CommunicatorDestroyedException: null
01:42:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:53 ... 7 common frames omitted
01:42:55 2024-10-24 01:42:55,709 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:42:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:55 Caused by: Ice.CommunicatorDestroyedException: null
01:42:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:55 ... 7 common frames omitted
01:42:57 2024-10-24 01:42:57,477 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:57 Caused by: Ice.CommunicatorDestroyedException: null
01:42:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:57 ... 7 common frames omitted
01:42:59 2024-10-24 01:42:59,206 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:59 Caused by: Ice.CommunicatorDestroyedException: null
01:42:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:59 ... 7 common frames omitted
01:43:01 2024-10-24 01:43:01,188 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:43:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:01 Caused by: Ice.CommunicatorDestroyedException: null
01:43:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:01 ... 7 common frames omitted
01:43:02 2024-10-24 01:43:02,888 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:43:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:02 Caused by: Ice.CommunicatorDestroyedException: null
01:43:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:02 ... 7 common frames omitted
01:43:04 2024-10-24 01:43:04,825 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:43:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:04 Caused by: Ice.CommunicatorDestroyedException: null
01:43:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:04 ... 7 common frames omitted
01:43:06 2024-10-24 01:43:06,615 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:43:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:06 Caused by: Ice.CommunicatorDestroyedException: null
01:43:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:06 ... 7 common frames omitted
01:43:08 2024-10-24 01:43:08,618 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:43:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:08 Caused by: Ice.CommunicatorDestroyedException: null
01:43:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:08 ... 7 common frames omitted
01:43:09 2024-10-24 01:43:09,850 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:43:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:43:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:43:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:43:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:43:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:43:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:43:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:43:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:43:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:43:09 Caused by: Ice.CommunicatorDestroyedException: null
01:43:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:43:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:43:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:43:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:43:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:43:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:43:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:43:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:43:09 ... 7 common frames omitted
01:49:03 2024-10-24 01:49:03,057 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:49:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:03 Caused by: Ice.CommunicatorDestroyedException: null
01:49:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:03 ... 7 common frames omitted
01:49:49 2024-10-24 01:49:49,910 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:49:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:49 Caused by: Ice.CommunicatorDestroyedException: null
01:49:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:49 ... 7 common frames omitted
01:49:52 2024-10-24 01:49:52,424 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:49:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:52 Caused by: Ice.CommunicatorDestroyedException: null
01:49:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:52 ... 7 common frames omitted
02:03:50 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:03:50 reason = "Password check failed for '023815ba-12ad-4aa1-976d-5786cc7d92df': [id=3014]"
02:03:50 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:03:50 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:03:50 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:03:50 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:03:50 at java.base/java.lang.Class.newInstance(Class.java:584)
02:03:50 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:03:50 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:03:50 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:03:50 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:03:50 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:03:50 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:03:50 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:03:50 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:03:50 at omero.client.createSession(client.java:776)
02:03:50 at omero.client.createSession(client.java:719)
02:03:50 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:03:50 at omero.gateway.Gateway.connect(Gateway.java:297)
02:03:50 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:03:50 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:03:50 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:03:50 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:03:50 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:03:50 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:03:50 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:03:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:03:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:03:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:03:50 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:03:50 reason = "Password check failed for '023815ba-12ad-4aa1-976d-5786cc7d92df': [id=3014]"
02:03:50 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:03:50 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:03:50 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:03:50 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:03:50 at java.base/java.lang.Class.newInstance(Class.java:584)
02:03:50 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:03:50 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:03:50 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:03:50 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:03:50 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:03:50 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:03:50 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:03:50 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:03:50 at omero.client.createSession(client.java:776)
02:03:50 at omero.client.createSession(client.java:719)
02:03:50 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:03:50 at omero.gateway.Gateway.connect(Gateway.java:297)
02:03:50 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:03:50 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:03:50 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:03:50 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:03:50 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:03:50 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:03:50 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:03:50 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:03:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:03:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:03:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:03:50 Exception in thread "TestNG-method=testLoginFallback-1"
02:04:04 Support for FileAnnotationData is deprecated. Use OriginalFile instead.
02:04:06 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:04:06 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:04:06 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:06 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:06 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:06 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:06 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:06 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:04:06 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:04:06 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:06 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:06 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:06 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:06 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:06 Exception in thread "TestNG-method=testInvalidParams-1"
02:04:06 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:04:06 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:04:06 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:06 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:06 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:06 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:06 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:06 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:04:06 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:04:06 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:06 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:06 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:06 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:06 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:06 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:06 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:06 Exception in thread "TestNG-method=testInvalidParams-1"
02:04:06 No concrete type specified for column 'column1', using Object.toString()
02:04:07 Request rows 241 to 319; columns [4, 8, 6, 1]
02:04:08 Request rows 1823 to 1874; columns [9, 0, 5, 8, 2, 7, 10, 1]
02:04:10 Request rows 87 to 159; columns []
02:04:12 Request rows 363 to 454; columns [6, 4, 2, 8, 5]
02:04:13 Request rows 1013 to 1080; columns [2, 3, 10, 0, 5, 9, 7]
02:04:35 2024-10-24 02:04:35,872 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:04:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:04:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:04:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:04:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:04:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:35 Caused by: Ice.CommunicatorDestroyedException: null
02:04:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:04:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:04:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:04:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:04:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:04:35 ... 7 common frames omitted
02:06:01 2024-10-24 02:06:01,894 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:01 Caused by: Ice.CommunicatorDestroyedException: null
02:06:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:01 ... 7 common frames omitted
02:06:06 2024-10-24 02:06:06,620 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:06 Caused by: Ice.CommunicatorDestroyedException: null
02:06:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:06 ... 7 common frames omitted
02:06:10 2024-10-24 02:06:10,768 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:10 Caused by: Ice.CommunicatorDestroyedException: null
02:06:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:10 ... 7 common frames omitted
02:06:15 2024-10-24 02:06:15,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:06:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:15 Caused by: Ice.CommunicatorDestroyedException: null
02:06:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:15 ... 7 common frames omitted
02:06:18 2024-10-24 02:06:18,736 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:06:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:18 Caused by: Ice.CommunicatorDestroyedException: null
02:06:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:18 ... 7 common frames omitted
02:06:22 2024-10-24 02:06:22,309 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:22 Caused by: Ice.CommunicatorDestroyedException: null
02:06:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:22 ... 7 common frames omitted
02:06:25 2024-10-24 02:06:25,771 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:25 Caused by: Ice.CommunicatorDestroyedException: null
02:06:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:25 ... 7 common frames omitted
02:06:29 2024-10-24 02:06:29,227 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:29 Caused by: Ice.CommunicatorDestroyedException: null
02:06:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:29 ... 7 common frames omitted
02:06:32 2024-10-24 02:06:32,693 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:06:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:32 Caused by: Ice.CommunicatorDestroyedException: null
02:06:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:32 ... 7 common frames omitted
02:06:34 2024-10-24 02:06:34,507 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:06:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:34 Caused by: Ice.CommunicatorDestroyedException: null
02:06:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:34 ... 7 common frames omitted
02:06:36 2024-10-24 02:06:36,288 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:36 Caused by: Ice.CommunicatorDestroyedException: null
02:06:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:36 ... 7 common frames omitted
02:06:38 2024-10-24 02:06:38,172 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:38 Caused by: Ice.CommunicatorDestroyedException: null
02:06:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:38 ... 7 common frames omitted
02:06:40 2024-10-24 02:06:40,732 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:40 Caused by: Ice.CommunicatorDestroyedException: null
02:06:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:40 ... 7 common frames omitted
02:06:43 2024-10-24 02:06:43,838 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:06:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:43 Caused by: Ice.CommunicatorDestroyedException: null
02:06:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:43 ... 7 common frames omitted
02:06:47 2024-10-24 02:06:47,089 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:06:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:47 Caused by: Ice.CommunicatorDestroyedException: null
02:06:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:47 ... 7 common frames omitted
02:06:50 2024-10-24 02:06:50,050 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:50 Caused by: Ice.CommunicatorDestroyedException: null
02:06:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:50 ... 7 common frames omitted
02:06:52 2024-10-24 02:06:52,301 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:52 Caused by: Ice.CommunicatorDestroyedException: null
02:06:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:52 ... 7 common frames omitted
02:06:54 2024-10-24 02:06:54,626 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:54 Caused by: Ice.CommunicatorDestroyedException: null
02:06:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:54 ... 7 common frames omitted
02:06:56 2024-10-24 02:06:56,979 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:06:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:56 Caused by: Ice.CommunicatorDestroyedException: null
02:06:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:56 ... 7 common frames omitted
02:06:59 2024-10-24 02:06:59,463 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:06:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:59 Caused by: Ice.CommunicatorDestroyedException: null
02:06:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:59 ... 7 common frames omitted
02:07:01 2024-10-24 02:07:01,871 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:01 Caused by: Ice.CommunicatorDestroyedException: null
02:07:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:01 ... 7 common frames omitted
02:07:03 2024-10-24 02:07:03,286 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:03 Caused by: Ice.CommunicatorDestroyedException: null
02:07:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:03 ... 7 common frames omitted
02:07:04 2024-10-24 02:07:04,727 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:04 Caused by: Ice.CommunicatorDestroyedException: null
02:07:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:04 ... 7 common frames omitted
02:07:06 2024-10-24 02:07:06,217 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:06 Caused by: Ice.CommunicatorDestroyedException: null
02:07:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:06 ... 7 common frames omitted
02:07:08 2024-10-24 02:07:08,501 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:08 Caused by: Ice.CommunicatorDestroyedException: null
02:07:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:08 ... 7 common frames omitted
02:07:12 2024-10-24 02:07:12,636 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:12 Caused by: Ice.CommunicatorDestroyedException: null
02:07:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:12 ... 7 common frames omitted
02:07:16 2024-10-24 02:07:16,926 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:16 Caused by: Ice.CommunicatorDestroyedException: null
02:07:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:16 ... 7 common frames omitted
02:07:20 2024-10-24 02:07:20,967 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:20 Caused by: Ice.CommunicatorDestroyedException: null
02:07:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:20 ... 7 common frames omitted
02:07:25 2024-10-24 02:07:25,122 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:25 Caused by: Ice.CommunicatorDestroyedException: null
02:07:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:25 ... 7 common frames omitted
02:07:27 2024-10-24 02:07:27,242 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:27 Caused by: Ice.CommunicatorDestroyedException: null
02:07:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:27 ... 7 common frames omitted
02:07:28 2024-10-24 02:07:28,880 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:28 Caused by: Ice.CommunicatorDestroyedException: null
02:07:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:28 ... 7 common frames omitted
02:07:32 2024-10-24 02:07:32,523 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:32 Caused by: Ice.CommunicatorDestroyedException: null
02:07:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:32 ... 7 common frames omitted
02:07:35 2024-10-24 02:07:35,892 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:35 Caused by: Ice.CommunicatorDestroyedException: null
02:07:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:35 ... 7 common frames omitted
02:07:39 2024-10-24 02:07:39,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:39 Caused by: Ice.CommunicatorDestroyedException: null
02:07:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:39 ... 7 common frames omitted
02:07:42 2024-10-24 02:07:42,817 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:42 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:42 Caused by: Ice.CommunicatorDestroyedException: null
02:07:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:42 ... 7 common frames omitted
02:07:44 2024-10-24 02:07:44,694 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:44 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:44 Caused by: Ice.CommunicatorDestroyedException: null
02:07:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:44 ... 7 common frames omitted
02:07:46 2024-10-24 02:07:46,426 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:46 Caused by: Ice.CommunicatorDestroyedException: null
02:07:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:46 ... 7 common frames omitted
02:07:48 2024-10-24 02:07:48,357 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:48 Caused by: Ice.CommunicatorDestroyedException: null
02:07:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:48 ... 7 common frames omitted
02:08:25 2024-10-24 02:08:25,479 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:25 Caused by: Ice.CommunicatorDestroyedException: null
02:08:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:25 ... 7 common frames omitted
02:08:29 2024-10-24 02:08:29,950 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:29 Caused by: Ice.CommunicatorDestroyedException: null
02:08:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:29 ... 7 common frames omitted
02:08:34 2024-10-24 02:08:34,441 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:34 Caused by: Ice.CommunicatorDestroyedException: null
02:08:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:34 ... 7 common frames omitted
02:08:52 2024-10-24 02:08:52,892 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:52 Caused by: Ice.CommunicatorDestroyedException: null
02:08:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:52 ... 7 common frames omitted
02:09:35 2024-10-24 02:09:35,326 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:09:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:35 Caused by: Ice.CommunicatorDestroyedException: null
02:09:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:35 ... 7 common frames omitted
02:09:46 2024-10-24 02:09:46,179 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:09:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:46 Caused by: Ice.CommunicatorDestroyedException: null
02:09:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:46 ... 7 common frames omitted
02:09:47 2024-10-24 02:09:47,484 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:09:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:47 Caused by: Ice.CommunicatorDestroyedException: null
02:09:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:47 ... 7 common frames omitted
02:09:50 2024-10-24 02:09:50,037 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:09:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:50 Caused by: Ice.CommunicatorDestroyedException: null
02:09:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:50 ... 7 common frames omitted
02:09:51 2024-10-24 02:09:51,374 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:09:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:51 Caused by: Ice.CommunicatorDestroyedException: null
02:09:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:51 ... 7 common frames omitted
02:09:52 2024-10-24 02:09:52,610 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:09:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:52 Caused by: Ice.CommunicatorDestroyedException: null
02:09:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:52 ... 7 common frames omitted
02:09:54 2024-10-24 02:09:54,734 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:09:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:54 Caused by: Ice.CommunicatorDestroyedException: null
02:09:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:54 ... 7 common frames omitted
02:09:56 2024-10-24 02:09:56,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:09:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:56 Caused by: Ice.CommunicatorDestroyedException: null
02:09:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:56 ... 7 common frames omitted
02:09:57 2024-10-24 02:09:57,243 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:09:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:57 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:57 Caused by: Ice.CommunicatorDestroyedException: null
02:09:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:57 ... 7 common frames omitted
02:09:58 2024-10-24 02:09:58,508 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:09:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:58 Caused by: Ice.CommunicatorDestroyedException: null
02:09:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:58 ... 7 common frames omitted
02:10:01 2024-10-24 02:10:01,257 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:01 Caused by: Ice.CommunicatorDestroyedException: null
02:10:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:01 ... 7 common frames omitted
02:10:02 2024-10-24 02:10:02,107 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:02 Caused by: Ice.CommunicatorDestroyedException: null
02:10:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:02 ... 7 common frames omitted
02:10:03 2024-10-24 02:10:03,401 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:03 Caused by: Ice.CommunicatorDestroyedException: null
02:10:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:03 ... 7 common frames omitted
02:10:04 2024-10-24 02:10:04,252 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:04 Caused by: Ice.CommunicatorDestroyedException: null
02:10:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:04 ... 7 common frames omitted
02:10:05 2024-10-24 02:10:05,617 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:05 Caused by: Ice.CommunicatorDestroyedException: null
02:10:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:05 ... 7 common frames omitted
02:10:06 2024-10-24 02:10:06,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:10:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:06 Caused by: Ice.CommunicatorDestroyedException: null
02:10:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:06 ... 7 common frames omitted
02:10:07 2024-10-24 02:10:07,688 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:07 Caused by: Ice.CommunicatorDestroyedException: null
02:10:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:07 ... 7 common frames omitted
02:10:08 2024-10-24 02:10:08,501 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:08 Caused by: Ice.CommunicatorDestroyedException: null
02:10:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:08 ... 7 common frames omitted
02:10:09 2024-10-24 02:10:09,990 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:09 Caused by: Ice.CommunicatorDestroyedException: null
02:10:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:09 ... 7 common frames omitted
02:10:10 2024-10-24 02:10:10,834 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:10 Caused by: Ice.CommunicatorDestroyedException: null
02:10:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:10 ... 7 common frames omitted
02:10:12 2024-10-24 02:10:12,065 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:10:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:12 Caused by: Ice.CommunicatorDestroyedException: null
02:10:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:12 ... 7 common frames omitted
02:10:12 2024-10-24 02:10:12,862 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:12 Caused by: Ice.CommunicatorDestroyedException: null
02:10:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:12 ... 7 common frames omitted
02:10:14 2024-10-24 02:10:14,074 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:14 Caused by: Ice.CommunicatorDestroyedException: null
02:10:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:14 ... 7 common frames omitted
02:10:14 2024-10-24 02:10:14,884 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:14 Caused by: Ice.CommunicatorDestroyedException: null
02:10:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:14 ... 7 common frames omitted
02:10:16 2024-10-24 02:10:16,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:16 Caused by: Ice.CommunicatorDestroyedException: null
02:10:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:16 ... 7 common frames omitted
02:10:16 2024-10-24 02:10:16,981 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:16 Caused by: Ice.CommunicatorDestroyedException: null
02:10:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:16 ... 7 common frames omitted
02:10:18 2024-10-24 02:10:18,415 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:18 Caused by: Ice.CommunicatorDestroyedException: null
02:10:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:18 ... 7 common frames omitted
02:10:19 2024-10-24 02:10:19,247 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:10:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:19 Caused by: Ice.CommunicatorDestroyedException: null
02:10:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:19 ... 7 common frames omitted
02:10:20 2024-10-24 02:10:20,699 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:10:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:20 Caused by: Ice.CommunicatorDestroyedException: null
02:10:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:20 ... 7 common frames omitted
02:10:21 2024-10-24 02:10:21,535 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:21 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:21 Caused by: Ice.CommunicatorDestroyedException: null
02:10:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:21 ... 7 common frames omitted
02:10:23 2024-10-24 02:10:23,018 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:23 Caused by: Ice.CommunicatorDestroyedException: null
02:10:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:23 ... 7 common frames omitted
02:10:23 2024-10-24 02:10:23,940 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:23 Caused by: Ice.CommunicatorDestroyedException: null
02:10:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:23 ... 7 common frames omitted
02:10:25 2024-10-24 02:10:25,281 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:25 Caused by: Ice.CommunicatorDestroyedException: null
02:10:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:25 ... 7 common frames omitted
02:10:26 2024-10-24 02:10:26,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:26 Caused by: Ice.CommunicatorDestroyedException: null
02:10:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:26 ... 7 common frames omitted
02:10:27 2024-10-24 02:10:27,589 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:27 Caused by: Ice.CommunicatorDestroyedException: null
02:10:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:27 ... 7 common frames omitted
02:10:28 2024-10-24 02:10:28,414 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:10:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:28 Caused by: Ice.CommunicatorDestroyedException: null
02:10:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:28 ... 7 common frames omitted
02:10:29 2024-10-24 02:10:29,839 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:29 Caused by: Ice.CommunicatorDestroyedException: null
02:10:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:29 ... 7 common frames omitted
02:10:30 2024-10-24 02:10:30,703 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:30 Caused by: Ice.CommunicatorDestroyedException: null
02:10:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:30 ... 7 common frames omitted
02:10:32 2024-10-24 02:10:32,103 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:32 Caused by: Ice.CommunicatorDestroyedException: null
02:10:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:32 ... 7 common frames omitted
02:10:32 2024-10-24 02:10:32,932 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:32 Caused by: Ice.CommunicatorDestroyedException: null
02:10:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:32 ... 7 common frames omitted
02:10:34 2024-10-24 02:10:34,395 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:10:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:34 Caused by: Ice.CommunicatorDestroyedException: null
02:10:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:34 ... 7 common frames omitted
02:10:35 2024-10-24 02:10:35,224 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:35 Caused by: Ice.CommunicatorDestroyedException: null
02:10:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:35 ... 7 common frames omitted
02:10:39 2024-10-24 02:10:39,645 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:39 Caused by: Ice.CommunicatorDestroyedException: null
02:10:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:39 ... 7 common frames omitted
02:10:40 2024-10-24 02:10:40,526 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:40 Caused by: Ice.CommunicatorDestroyedException: null
02:10:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:40 ... 7 common frames omitted
02:10:47 2024-10-24 02:10:47,015 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:47 Caused by: Ice.CommunicatorDestroyedException: null
02:10:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:47 ... 7 common frames omitted
02:10:47 2024-10-24 02:10:47,887 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:47 Caused by: Ice.CommunicatorDestroyedException: null
02:10:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:47 ... 7 common frames omitted
02:10:55 2024-10-24 02:10:55,385 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:55 Caused by: Ice.CommunicatorDestroyedException: null
02:10:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:55 ... 7 common frames omitted
02:10:56 2024-10-24 02:10:56,249 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:10:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:56 Caused by: Ice.CommunicatorDestroyedException: null
02:10:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:56 ... 7 common frames omitted
02:11:02 2024-10-24 02:11:02,575 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:02 Caused by: Ice.CommunicatorDestroyedException: null
02:11:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:02 ... 7 common frames omitted
02:11:03 2024-10-24 02:11:03,493 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:03 Caused by: Ice.CommunicatorDestroyedException: null
02:11:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:03 ... 7 common frames omitted
02:11:06 2024-10-24 02:11:06,859 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:06 Caused by: Ice.CommunicatorDestroyedException: null
02:11:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:06 ... 7 common frames omitted
02:11:07 2024-10-24 02:11:07,686 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:07 Caused by: Ice.CommunicatorDestroyedException: null
02:11:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:07 ... 7 common frames omitted
02:11:10 2024-10-24 02:11:10,985 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:10 Caused by: Ice.CommunicatorDestroyedException: null
02:11:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:10 ... 7 common frames omitted
02:11:11 2024-10-24 02:11:11,811 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:11 Caused by: Ice.CommunicatorDestroyedException: null
02:11:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:11 ... 7 common frames omitted
02:11:23 2024-10-24 02:11:23,333 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:23 Caused by: Ice.CommunicatorDestroyedException: null
02:11:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:23 ... 7 common frames omitted
02:11:24 2024-10-24 02:11:24,180 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:24 Caused by: Ice.CommunicatorDestroyedException: null
02:11:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:24 ... 7 common frames omitted
02:11:30 2024-10-24 02:11:30,632 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:30 Caused by: Ice.CommunicatorDestroyedException: null
02:11:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:30 ... 7 common frames omitted
02:11:31 2024-10-24 02:11:31,427 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:31 Caused by: Ice.CommunicatorDestroyedException: null
02:11:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:31 ... 7 common frames omitted
02:11:34 2024-10-24 02:11:34,848 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:34 Caused by: Ice.CommunicatorDestroyedException: null
02:11:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:34 ... 7 common frames omitted
02:11:35 2024-10-24 02:11:35,702 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:35 Caused by: Ice.CommunicatorDestroyedException: null
02:11:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:35 ... 7 common frames omitted
02:11:39 2024-10-24 02:11:39,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:39 Caused by: Ice.CommunicatorDestroyedException: null
02:11:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:39 ... 7 common frames omitted
02:11:39 2024-10-24 02:11:39,916 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:39 Caused by: Ice.CommunicatorDestroyedException: null
02:11:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:39 ... 7 common frames omitted
02:11:46 2024-10-24 02:11:46,343 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:46 Caused by: Ice.CommunicatorDestroyedException: null
02:11:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:46 ... 7 common frames omitted
02:11:47 2024-10-24 02:11:47,167 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:47 Caused by: Ice.CommunicatorDestroyedException: null
02:11:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:47 ... 7 common frames omitted
02:11:50 2024-10-24 02:11:50,624 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:50 Caused by: Ice.CommunicatorDestroyedException: null
02:11:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:50 ... 7 common frames omitted
02:11:51 2024-10-24 02:11:51,423 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:51 Caused by: Ice.CommunicatorDestroyedException: null
02:11:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:51 ... 7 common frames omitted
02:11:55 2024-10-24 02:11:55,035 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:55 Caused by: Ice.CommunicatorDestroyedException: null
02:11:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:55 ... 7 common frames omitted
02:11:55 2024-10-24 02:11:55,892 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:55 Caused by: Ice.CommunicatorDestroyedException: null
02:11:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:55 ... 7 common frames omitted
02:12:03 2024-10-24 02:12:03,422 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:12:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:03 Caused by: Ice.CommunicatorDestroyedException: null
02:12:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:03 ... 7 common frames omitted
02:12:04 2024-10-24 02:12:04,253 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:12:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:04 Caused by: Ice.CommunicatorDestroyedException: null
02:12:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:04 ... 7 common frames omitted
02:12:10 2024-10-24 02:12:10,942 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:12:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:10 Caused by: Ice.CommunicatorDestroyedException: null
02:12:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:10 ... 7 common frames omitted
02:12:11 2024-10-24 02:12:11,861 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:12:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:11 Caused by: Ice.CommunicatorDestroyedException: null
02:12:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:11 ... 7 common frames omitted
02:12:19 2024-10-24 02:12:19,345 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:12:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:19 Caused by: Ice.CommunicatorDestroyedException: null
02:12:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:19 ... 7 common frames omitted
02:12:20 2024-10-24 02:12:20,255 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:20 Caused by: Ice.CommunicatorDestroyedException: null
02:12:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:20 ... 7 common frames omitted
02:12:26 2024-10-24 02:12:26,717 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:12:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:26 Caused by: Ice.CommunicatorDestroyedException: null
02:12:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:26 ... 7 common frames omitted
02:12:27 2024-10-24 02:12:27,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:12:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:27 Caused by: Ice.CommunicatorDestroyedException: null
02:12:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:27 ... 7 common frames omitted
02:12:30 2024-10-24 02:12:30,813 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:12:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:30 Caused by: Ice.CommunicatorDestroyedException: null
02:12:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:30 ... 7 common frames omitted
02:12:31 2024-10-24 02:12:31,658 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:12:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:31 Caused by: Ice.CommunicatorDestroyedException: null
02:12:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:31 ... 7 common frames omitted
02:12:34 2024-10-24 02:12:34,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:34 Caused by: Ice.CommunicatorDestroyedException: null
02:12:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:34 ... 7 common frames omitted
02:12:35 2024-10-24 02:12:35,799 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:12:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:35 Caused by: Ice.CommunicatorDestroyedException: null
02:12:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:35 ... 7 common frames omitted
02:12:43 2024-10-24 02:12:43,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:12:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:43 Caused by: Ice.CommunicatorDestroyedException: null
02:12:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:43 ... 7 common frames omitted
02:12:44 2024-10-24 02:12:44,068 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:12:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:44 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:44 Caused by: Ice.CommunicatorDestroyedException: null
02:12:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:44 ... 7 common frames omitted
02:12:50 2024-10-24 02:12:50,467 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:12:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:50 Caused by: Ice.CommunicatorDestroyedException: null
02:12:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:50 ... 7 common frames omitted
02:12:51 2024-10-24 02:12:51,301 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:12:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:51 Caused by: Ice.CommunicatorDestroyedException: null
02:12:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:51 ... 7 common frames omitted
02:12:54 2024-10-24 02:12:54,804 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:12:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:54 Caused by: Ice.CommunicatorDestroyedException: null
02:12:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:54 ... 7 common frames omitted
02:12:55 2024-10-24 02:12:55,648 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:55 Caused by: Ice.CommunicatorDestroyedException: null
02:12:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:55 ... 7 common frames omitted
02:12:59 2024-10-24 02:12:59,050 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:59 Caused by: Ice.CommunicatorDestroyedException: null
02:12:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:59 ... 7 common frames omitted
02:12:59 2024-10-24 02:12:59,902 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:12:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:59 Caused by: Ice.CommunicatorDestroyedException: null
02:12:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:59 ... 7 common frames omitted
02:13:07 2024-10-24 02:13:07,291 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:13:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:07 Caused by: Ice.CommunicatorDestroyedException: null
02:13:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:07 ... 7 common frames omitted
02:13:08 2024-10-24 02:13:08,074 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:08 Caused by: Ice.CommunicatorDestroyedException: null
02:13:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:08 ... 7 common frames omitted
02:13:14 2024-10-24 02:13:14,608 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:13:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:14 Caused by: Ice.CommunicatorDestroyedException: null
02:13:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:14 ... 7 common frames omitted
02:13:15 2024-10-24 02:13:15,467 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:15 Caused by: Ice.CommunicatorDestroyedException: null
02:13:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:15 ... 7 common frames omitted
02:13:18 2024-10-24 02:13:18,906 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:18 Caused by: Ice.CommunicatorDestroyedException: null
02:13:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:18 ... 7 common frames omitted
02:13:19 2024-10-24 02:13:19,787 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:13:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:19 Caused by: Ice.CommunicatorDestroyedException: null
02:13:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:19 ... 7 common frames omitted
02:13:27 2024-10-24 02:13:27,260 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:27 Caused by: Ice.CommunicatorDestroyedException: null
02:13:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:27 ... 7 common frames omitted
02:13:28 2024-10-24 02:13:28,147 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:13:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:28 Caused by: Ice.CommunicatorDestroyedException: null
02:13:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:28 ... 7 common frames omitted
02:13:34 2024-10-24 02:13:34,555 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:13:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:34 Caused by: Ice.CommunicatorDestroyedException: null
02:13:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:34 ... 7 common frames omitted
02:13:35 2024-10-24 02:13:35,365 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:13:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:35 Caused by: Ice.CommunicatorDestroyedException: null
02:13:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:35 ... 7 common frames omitted
02:13:38 2024-10-24 02:13:38,697 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:13:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:38 Caused by: Ice.CommunicatorDestroyedException: null
02:13:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:38 ... 7 common frames omitted
02:13:39 2024-10-24 02:13:39,515 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:39 Caused by: Ice.CommunicatorDestroyedException: null
02:13:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:39 ... 7 common frames omitted
02:13:42 2024-10-24 02:13:42,841 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:13:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:42 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:42 Caused by: Ice.CommunicatorDestroyedException: null
02:13:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:42 ... 7 common frames omitted
02:13:43 2024-10-24 02:13:43,701 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:43 Caused by: Ice.CommunicatorDestroyedException: null
02:13:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:43 ... 7 common frames omitted
02:13:51 2024-10-24 02:13:51,209 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:51 Caused by: Ice.CommunicatorDestroyedException: null
02:13:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:51 ... 7 common frames omitted
02:13:52 2024-10-24 02:13:52,017 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:13:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:52 Caused by: Ice.CommunicatorDestroyedException: null
02:13:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:52 ... 7 common frames omitted
02:13:58 2024-10-24 02:13:58,684 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:58 Caused by: Ice.CommunicatorDestroyedException: null
02:13:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:58 ... 7 common frames omitted
02:13:59 2024-10-24 02:13:59,494 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:13:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:59 Caused by: Ice.CommunicatorDestroyedException: null
02:13:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:59 ... 7 common frames omitted
02:14:03 2024-10-24 02:14:03,075 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:14:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:03 Caused by: Ice.CommunicatorDestroyedException: null
02:14:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:03 ... 7 common frames omitted
02:14:03 2024-10-24 02:14:03,950 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:14:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:03 Caused by: Ice.CommunicatorDestroyedException: null
02:14:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:03 ... 7 common frames omitted
02:14:10 2024-10-24 02:14:10,593 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:10 Caused by: Ice.CommunicatorDestroyedException: null
02:14:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:10 ... 7 common frames omitted
02:14:11 2024-10-24 02:14:11,417 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:14:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:11 Caused by: Ice.CommunicatorDestroyedException: null
02:14:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:11 ... 7 common frames omitted
02:14:14 2024-10-24 02:14:14,995 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:14:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:14 Caused by: Ice.CommunicatorDestroyedException: null
02:14:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:14 ... 7 common frames omitted
02:14:15 2024-10-24 02:14:15,936 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:14:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:15 Caused by: Ice.CommunicatorDestroyedException: null
02:14:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:15 ... 7 common frames omitted
02:14:23 2024-10-24 02:14:23,534 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:14:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:23 Caused by: Ice.CommunicatorDestroyedException: null
02:14:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:23 ... 7 common frames omitted
02:14:24 2024-10-24 02:14:24,560 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:14:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:24 Caused by: Ice.CommunicatorDestroyedException: null
02:14:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:24 ... 7 common frames omitted
02:14:30 ===============================================
02:14:30 OmeroJava.integration
02:14:30 Total tests run: 2589, Passes: 2588, Failures: 1, Skips: 0
02:14:30 ===============================================
02:14:31 2024-10-24 02:14:31,275 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:14:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:31 Caused by: Ice.CommunicatorDestroyedException: null
02:14:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:31 ... 7 common frames omitted
02:14:32 2024-10-24 02:14:32,174 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:32 Caused by: Ice.CommunicatorDestroyedException: null
02:14:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:32 ... 7 common frames omitted
02:14:32 The tests failed.
02:14:32
02:14:32 BUILD SUCCESSFUL
02:14:32 Total time: 65 minutes 20 seconds
02:14:32 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -Dtestreports.dir=target/reports/integration
02:14:32 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
02:14:32 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
02:14:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:14:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:14:33
02:14:33 python-integration:
02:14:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration
02:14:34 ============================= test session starts ==============================
02:14:34 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
02:14:34 cachedir: .pytest_cache
02:14:34 django: version: 4.2.16, settings: omeroweb.settings (from ini)
02:14:34 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
02:14:34 configfile: pytest.ini
02:14:34 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
02:14:38 collecting ... collected 2061 items / 36 deselected / 2025 selected
02:14:46 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 FAILED [ 0%]
02:14:52 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 FAILED [ 0%]
02:14:53 test/integration/clitest/test_admin.py::TestAdmin::test_log PASSED [ 0%]
02:14:56 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_log PASSED [ 0%]
02:15:02 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 FAILED [ 0%]
02:15:08 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 FAILED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Image] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Dataset] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Project] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Plate] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Screen] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Image] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Dataset] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Project] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Plate] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Screen] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Image] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Dataset] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Project] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Plate] PASSED [ 0%]
02:15:11 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Screen] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Image] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Dataset] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Project] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Plate] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Screen] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Image] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Dataset] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Project] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Plate] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Screen] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Image] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Dataset] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Project] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Plate] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Screen] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Image] PASSED [ 1%]
02:15:12 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Dataset] PASSED [ 1%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Project] PASSED [ 1%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Plate] PASSED [ 1%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Screen] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Image] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Dataset] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Project] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Plate] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Screen] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Image] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Dataset] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Project] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Plate] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Screen] PASSED [ 2%]
02:15:13 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Image] PASSED [ 2%]
02:15:14 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Dataset] PASSED [ 2%]
02:15:14 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Project] PASSED [ 2%]
02:15:14 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Plate] PASSED [ 2%]
02:15:14 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Screen] PASSED [ 2%]
02:15:14 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Image] PASSED [ 2%]
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02:20:00 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[%s %s %s---no-salt---file] PASSED [ 11%]
02:20:01 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s--] PASSED [ 11%]
02:20:01 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---f] PASSED [ 11%]
02:20:02 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s----file] PASSED [ 11%]
02:20:02 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt-] PASSED [ 11%]
02:20:02 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt--f] PASSED [ 11%]
02:20:03 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt---file] PASSED [ 11%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Image-] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Image-I] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Dataset-] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Dataset-I] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Project-] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Project-I] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Plate-] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Plate-I] PASSED [ 12%]
02:20:05 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-] PASSED [ 12%]
02:20:06 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-I] PASSED [ 12%]
02:20:10 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-1] PASSED [ 12%]
02:20:14 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-2] PASSED [ 12%]
02:20:17 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-1] PASSED [ 12%]
02:20:21 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-2] PASSED [ 12%]
02:20:24 test/integration/clitest/test_delete.py::TestDelete::testFilesetPartialFailing PASSED [ 12%]
02:20:28 test/integration/clitest/test_delete.py::TestDelete::testFilesetAllImagesDeleteDataset PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-1] PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-2] PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-3] PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-1] PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-2] PASSED [ 12%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-3] PASSED [ 13%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-1] PASSED [ 13%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-2] PASSED [ 13%]
02:20:29 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-3] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-1] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-2] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-3] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-1] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-2] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-3] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-1] PASSED [ 13%]
02:20:30 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-2] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-3] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-/Dataset] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-/Dataset] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-] PASSED [ 13%]
02:20:31 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-/Dataset] PASSED [ 13%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-] PASSED [ 13%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-/Dataset] PASSED [ 13%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-] PASSED [ 14%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-1] PASSED [ 14%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-2] PASSED [ 14%]
02:20:32 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-3] PASSED [ 14%]
02:20:33 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-1] PASSED [ 14%]
02:20:33 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-2] PASSED [ 14%]
02:20:33 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-3] PASSED [ 14%]
02:20:34 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-1] PASSED [ 14%]
02:20:34 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-2] PASSED [ 14%]
02:20:34 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-3] PASSED [ 14%]
02:20:34 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-1] PASSED [ 14%]
02:20:35 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-2] PASSED [ 14%]
02:20:35 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-3] PASSED [ 14%]
02:20:35 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-1] PASSED [ 14%]
02:20:36 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-2] PASSED [ 14%]
02:20:36 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-3] PASSED [ 14%]
02:20:36 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-1] PASSED [ 14%]
02:20:36 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-2] PASSED [ 14%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-3] PASSED [ 14%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testDryRun PASSED [ 14%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testExcludeNone PASSED [ 15%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testExcludeDataset PASSED [ 15%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testExcludeImage PASSED [ 15%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testExcludeOverridesInclude PASSED [ 15%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusion PASSED [ 15%]
02:20:37 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionOverride PASSED [ 15%]
02:20:38 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionPartialOverride PASSED [ 15%]
02:20:38 test/integration/clitest/test_delete.py::TestDelete::testSeparateAnnotationDelete PASSED [ 15%]
02:20:38 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDelete PASSED [ 15%]
02:20:38 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDeleteWithOverride PASSED [ 15%]
02:20:38 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1] PASSED [ 15%]
02:20:39 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2] PASSED [ 15%]
02:20:39 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3] PASSED [ 15%]
02:20:39 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionForce PASSED [ 15%]
02:20:41 test/integration/clitest/test_delete.py::TestDelete::testElisionDefaultFailForce PASSED [ 15%]
02:21:09 test/integration/clitest/test_delete.py::TestDelete::testOutputWithElision PASSED [ 15%]
02:21:11 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetNotTags PASSED [ 15%]
02:21:11 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsNotTags PASSED [ 15%]
02:21:11 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetIncludingTags PASSED [ 15%]
02:21:12 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsIncludingTags PASSED [ 15%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testNonExistingOriginalFile[] PASSED [ 16%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testNonExistingOriginalFile[OriginalFile:] PASSED [ 16%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[] PASSED [ 16%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[OriginalFile:] PASSED [ 16%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[] PASSED [ 16%]
02:21:14 test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[OriginalFile:] PASSED [ 16%]
02:21:16 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[] PASSED [ 16%]
02:21:19 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[OriginalFile:] PASSED [ 16%]
02:21:19 test/integration/clitest/test_download.py::TestDownload::testNonExistingFileAnnotation PASSED [ 16%]
02:21:19 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationTmpfile PASSED [ 16%]
02:21:19 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationStdout PASSED [ 16%]
02:21:21 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationMultipleGroups PASSED [ 16%]
02:21:25 test/integration/clitest/test_download.py::TestDownload::testNonExistingImage PASSED [ 16%]
02:21:29 test/integration/clitest/test_download.py::TestDownload::testImageFileset[True] PASSED [ 16%]
02:21:32 test/integration/clitest/test_download.py::TestDownload::testImageFileset[False] PASSED [ 16%]
02:21:36 test/integration/clitest/test_download.py::TestDownload::testSingleImageWithCompanion PASSED [ 16%]
02:21:40 test/integration/clitest/test_download.py::TestDownload::testMIF PASSED [ 16%]
02:21:40 test/integration/clitest/test_download.py::TestDownload::testImageNoFileset PASSED [ 16%]
02:21:46 test/integration/clitest/test_download.py::TestDownload::testImageMultipleGroups PASSED [ 16%]
02:21:46 test/integration/clitest/test_download.py::TestDownload::testValidPolicy PASSED [ 16%]
02:22:01 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image] PASSED [ 16%]
02:22:01 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,-write,-image,-plate] SKIPPED [ 17%]
02:22:01 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,+write,+image,-plate] SKIPPED [ 17%]
02:22:01 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,-plate] SKIPPED [ 17%]
02:22:01 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,+plate] SKIPPED [ 17%]
02:22:15 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image] PASSED [ 17%]
02:22:29 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,-write,-image,-plate] PASSED [ 17%]
02:22:44 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,+write,+image,-plate] PASSED [ 17%]
02:22:58 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,-plate] PASSED [ 17%]
02:23:12 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,+plate] PASSED [ 17%]
02:23:14 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Image-] PASSED [ 17%]
02:23:14 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Image-I] PASSED [ 17%]
02:23:14 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Dataset-] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Dataset-I] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Project-] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Project-I] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Plate-] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Plate-I] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Screen-] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Screen-I] PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectDryRun PASSED [ 17%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectReport PASSED [ 18%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectDryRunReport PASSED [ 18%]
02:23:15 test/integration/clitest/test_duplicate.py::TestDuplicate::testBasicHierarchyDuplication PASSED [ 18%]
02:23:16 test/integration/clitest/test_duplicate.py::TestDuplicate::testIgnoreLinks PASSED [ 18%]
02:23:16 test/integration/clitest/test_duplicate.py::TestDuplicate::testIgnoreLinksOverridden PASSED [ 18%]
02:23:16 test/integration/clitest/test_duplicate.py::TestDuplicate::testReferencing PASSED [ 18%]
02:23:16 test/integration/clitest/test_duplicate.py::TestDuplicate::testSkipheadDuplication PASSED [ 18%]
02:23:18 test/integration/clitest/test_fs.py::TestFS::testRepos PASSED [ 18%]
02:23:40 test/integration/clitest/test_fs.py::TestFS::testSetsWithTransfer PASSED [ 18%]
02:23:40 test/integration/clitest/test_fs.py::TestFS::testSetsAdminOnly PASSED [ 18%]
02:23:41 test/integration/clitest/test_fs.py::TestFS::testMkdirAdminOnly PASSED [ 18%]
02:23:45 test/integration/clitest/test_fs.py::TestFS::testImportTime[all-True] PASSED [ 18%]
02:23:49 test/integration/clitest/test_fs.py::TestFS::testImportTime[all-False] PASSED [ 18%]
02:24:05 test/integration/clitest/test_fs.py::TestFS::testImportTime[minmax-True] PASSED [ 18%]
02:24:18 test/integration/clitest/test_fs.py::TestFS::testImportTime[minmax-False] PASSED [ 18%]
02:24:33 test/integration/clitest/test_fs.py::TestFS::testImportTime[thumbnails-True] PASSED [ 18%]
02:24:46 test/integration/clitest/test_fs.py::TestFS::testImportTime[thumbnails-False] PASSED [ 18%]
02:24:48 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminSimpleDirCreation PASSED [ 18%]
02:24:48 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminHierarchyOnlyPreexisting PASSED [ 18%]
02:24:49 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminHierarchyParents PASSED [ 18%]
02:24:58 test/integration/clitest/test_group.py::TestGroup::testList[None-None] PASSED [ 19%]
02:25:01 test/integration/clitest/test_group.py::TestGroup::testList[None-id] PASSED [ 19%]
02:25:05 test/integration/clitest/test_group.py::TestGroup::testList[None-name] PASSED [ 19%]
02:25:08 test/integration/clitest/test_group.py::TestGroup::testList[count-None] PASSED [ 19%]
02:25:11 test/integration/clitest/test_group.py::TestGroup::testList[count-id] PASSED [ 19%]
02:25:15 test/integration/clitest/test_group.py::TestGroup::testList[count-name] PASSED [ 19%]
02:25:19 test/integration/clitest/test_group.py::TestGroup::testList[long-None] PASSED [ 19%]
02:25:22 test/integration/clitest/test_group.py::TestGroup::testList[long-id] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testList[long-name] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testAddAdminOnly PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoNoArgument PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[id] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[name] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[--group-id] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[--group-name] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testInfoInvalidGroup PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersNoArgument PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[id] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[name] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-id] PASSED [ 19%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-name] PASSED [ 20%]
02:25:26 test/integration/clitest/test_group.py::TestGroup::testListUsersInvalidArgument PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddDefaults PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rw----] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwr---] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwra--] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwrw--] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-private] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-only] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-annotate] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-write] PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddSameNamefails PASSED [ 20%]
02:25:29 test/integration/clitest/test_group.py::TestGroupRoot::testAddIgnoreExisting PASSED [ 20%]
02:25:30 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------id] PASSED [ 20%]
02:25:30 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------name] PASSED [ 20%]
02:25:31 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------id] PASSED [ 20%]
02:25:32 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------name] PASSED [ 20%]
02:25:33 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----id] PASSED [ 20%]
02:25:34 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----name] PASSED [ 20%]
02:25:35 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----id] PASSED [ 20%]
02:25:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----name] PASSED [ 20%]
02:25:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------id] PASSED [ 21%]
02:25:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------name] PASSED [ 21%]
02:25:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------id] PASSED [ 21%]
02:25:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------name] PASSED [ 21%]
02:25:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----id] PASSED [ 21%]
02:25:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----name] PASSED [ 21%]
02:25:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----id] PASSED [ 21%]
02:25:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----name] PASSED [ 21%]
02:25:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------id] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------name] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------id] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------name] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----id] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----name] PASSED [ 21%]
02:25:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----id] PASSED [ 21%]
02:25:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----name] PASSED [ 21%]
02:25:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------id] PASSED [ 21%]
02:25:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------name] PASSED [ 21%]
02:25:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------id] PASSED [ 21%]
02:25:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------name] PASSED [ 21%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----id] PASSED [ 22%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----name] PASSED [ 22%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----id] PASSED [ 22%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----name] PASSED [ 22%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------id] PASSED [ 22%]
02:25:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------name] PASSED [ 22%]
02:25:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------id] PASSED [ 22%]
02:25:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------name] PASSED [ 22%]
02:25:43 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----id] PASSED [ 22%]
02:25:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----name] PASSED [ 22%]
02:25:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----id] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----name] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------id] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------name] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------id] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------name] PASSED [ 22%]
02:25:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----id] PASSED [ 22%]
02:25:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----name] PASSED [ 22%]
02:25:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----id] PASSED [ 22%]
02:25:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----name] PASSED [ 22%]
02:25:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------id] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------name] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------id] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------name] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----id] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----name] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----id] PASSED [ 23%]
02:25:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----name] PASSED [ 23%]
02:25:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------id] PASSED [ 23%]
02:25:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------name] PASSED [ 23%]
02:25:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------id] PASSED [ 23%]
02:25:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------name] PASSED [ 23%]
02:25:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----id] PASSED [ 23%]
02:25:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----name] PASSED [ 23%]
02:25:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----id] PASSED [ 23%]
02:25:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----name] PASSED [ 23%]
02:25:52 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---id] PASSED [ 23%]
02:25:53 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---name] PASSED [ 23%]
02:25:55 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---id] PASSED [ 23%]
02:25:57 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---name] PASSED [ 23%]
02:25:59 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---id] PASSED [ 24%]
02:26:01 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---name] PASSED [ 24%]
02:26:03 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---id] PASSED [ 24%]
02:26:05 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---name] PASSED [ 24%]
02:26:07 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---id] PASSED [ 24%]
02:26:09 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---name] PASSED [ 24%]
02:26:11 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---id] PASSED [ 24%]
02:26:13 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---name] PASSED [ 24%]
02:26:15 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---id] PASSED [ 24%]
02:26:17 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---name] PASSED [ 24%]
02:26:19 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---id] PASSED [ 24%]
02:26:20 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---name] PASSED [ 24%]
02:26:22 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---id] PASSED [ 24%]
02:26:24 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---name] PASSED [ 24%]
02:26:26 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---id] PASSED [ 24%]
02:26:28 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---name] PASSED [ 24%]
02:26:30 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---id] PASSED [ 24%]
02:26:32 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---name] PASSED [ 24%]
02:26:34 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---id] PASSED [ 24%]
02:26:36 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---name] PASSED [ 24%]
02:26:38 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---id] PASSED [ 24%]
02:26:40 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---name] PASSED [ 25%]
02:26:42 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---id] PASSED [ 25%]
02:26:44 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---name] PASSED [ 25%]
02:26:46 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---id] PASSED [ 25%]
02:26:48 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---name] PASSED [ 25%]
02:26:50 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---id] PASSED [ 25%]
02:26:52 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---name] PASSED [ 25%]
02:26:54 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---id] PASSED [ 25%]
02:26:56 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---name] PASSED [ 25%]
02:26:58 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---id] PASSED [ 25%]
02:27:00 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---name] PASSED [ 25%]
02:27:02 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---id] PASSED [ 25%]
02:27:04 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---name] PASSED [ 25%]
02:27:06 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---id] PASSED [ 25%]
02:27:08 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---name] PASSED [ 25%]
02:27:10 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---id] PASSED [ 25%]
02:27:12 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---name] PASSED [ 25%]
02:27:14 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---id] PASSED [ 25%]
02:27:16 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---name] PASSED [ 25%]
02:27:17 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---id] PASSED [ 25%]
02:27:19 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---name] PASSED [ 26%]
02:27:21 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---id] PASSED [ 26%]
02:27:23 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---name] PASSED [ 26%]
02:27:31 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-id] PASSED [ 26%]
02:27:39 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-name] PASSED [ 26%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-id] PASSED [ 26%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-name] PASSED [ 26%]
02:28:03 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-id] PASSED [ 26%]
02:28:11 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-name] PASSED [ 26%]
02:28:19 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-id] PASSED [ 26%]
02:28:27 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-name] PASSED [ 26%]
02:28:42 test/integration/clitest/test_import.py::TestImport::testAutoClose PASSED [ 26%]
02:28:54 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-legacy] PASSED [ 26%]
02:29:07 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-underscore] PASSED [ 26%]
02:29:19 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[CRC-32-underscore] PASSED [ 26%]
02:29:32 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[File-Size-64-underscore] PASSED [ 26%]
02:29:44 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[MD5-128-underscore] PASSED [ 26%]
02:29:57 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-32-underscore] PASSED [ 26%]
02:30:10 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-128-underscore] PASSED [ 26%]
02:30:22 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[SHA1-160-underscore] PASSED [ 26%]
02:30:35 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-True] PASSED [ 27%]
02:30:47 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-False] PASSED [ 27%]
02:31:00 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-True] PASSED [ 27%]
02:31:13 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-False] PASSED [ 27%]
02:31:25 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-True] PASSED [ 27%]
02:31:38 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-False] PASSED [ 27%]
02:31:50 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-True] PASSED [ 27%]
02:32:03 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-False] PASSED [ 27%]
02:32:16 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-True] PASSED [ 27%]
02:32:28 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-False] PASSED [ 27%]
02:32:41 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-True] PASSED [ 27%]
02:32:53 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-False] PASSED [ 27%]
02:33:06 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Official] PASSED [ 27%]
02:33:18 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Deprecated] PASSED [ 27%]
02:33:31 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Official] PASSED [ 27%]
02:33:43 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Deprecated] PASSED [ 27%]
02:33:56 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Official] PASSED [ 27%]
02:34:08 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Deprecated] PASSED [ 27%]
02:34:21 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Official] PASSED [ 27%]
02:34:33 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Deprecated] PASSED [ 27%]
02:34:45 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Official] PASSED [ 28%]
02:34:58 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Deprecated] PASSED [ 28%]
02:35:10 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Official] PASSED [ 28%]
02:35:23 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Deprecated] PASSED [ 28%]
02:35:49 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-True] PASSED [ 28%]
02:36:14 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-False] PASSED [ 28%]
02:36:41 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-True] PASSED [ 28%]
02:37:06 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-False] PASSED [ 28%]
02:37:32 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-True] PASSED [ 28%]
02:37:57 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-False] PASSED [ 28%]
02:38:24 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-True] PASSED [ 28%]
02:38:49 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-False] PASSED [ 28%]
02:39:15 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-True] PASSED [ 28%]
02:39:40 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-False] PASSED [ 28%]
02:40:07 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-True] PASSED [ 28%]
02:40:31 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-False] PASSED [ 28%]
02:40:58 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-True] PASSED [ 28%]
02:41:23 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-False] PASSED [ 28%]
02:41:49 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-True] PASSED [ 28%]
02:42:14 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-False] PASSED [ 28%]
02:42:41 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--True] PASSED [ 28%]
02:43:06 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--False] PASSED [ 29%]
02:43:32 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-True] PASSED [ 29%]
02:43:57 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-False] PASSED [ 29%]
02:44:23 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-True] PASSED [ 29%]
02:44:48 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-False] PASSED [ 29%]
02:45:13 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-True] PASSED [ 29%]
02:45:38 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-False] PASSED [ 29%]
02:46:04 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-True] PASSED [ 29%]
02:46:28 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-False] PASSED [ 29%]
02:46:54 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--True] PASSED [ 29%]
02:47:18 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--False] PASSED [ 29%]
02:47:44 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-True] PASSED [ 29%]
02:48:08 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-False] PASSED [ 29%]
02:48:33 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-True] PASSED [ 29%]
02:48:58 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-False] PASSED [ 29%]
02:49:10 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-True] PASSED [ 29%]
02:49:23 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-False] PASSED [ 29%]
02:49:36 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-True] PASSED [ 29%]
02:49:49 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-False] PASSED [ 29%]
02:50:02 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--True] PASSED [ 29%]
02:50:14 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--False] PASSED [ 30%]
02:50:26 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[True] PASSED [ 30%]
02:50:39 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[False] PASSED [ 30%]
02:50:52 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[True] PASSED [ 30%]
02:51:05 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[False] PASSED [ 30%]
02:51:19 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-True] PASSED [ 30%]
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02:52:10 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--True] PASSED [ 30%]
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02:52:35 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-True] PASSED [ 30%]
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02:53:01 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[True] PASSED [ 30%]
02:53:13 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[False] PASSED [ 30%]
02:53:30 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-False] PASSED [ 30%]
02:53:46 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-True] PASSED [ 30%]
02:54:02 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-False] PASSED [ 30%]
02:54:19 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-True] PASSED [ 30%]
02:54:31 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Project] PASSED [ 30%]
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02:55:07 test/integration/clitest/test_import.py::TestImport::testBadModelTargetDiscriminator[Dataset] PASSED [ 31%]
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02:55:31 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ALL] PASSED [ 31%]
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02:55:56 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-DEBUG] PASSED [ 31%]
02:56:08 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-INFO] PASSED [ 31%]
02:56:20 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-WARN] PASSED [ 31%]
02:56:33 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ERROR] PASSED [ 31%]
02:56:45 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ALL] PASSED [ 31%]
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02:57:10 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---DEBUG] PASSED [ 31%]
02:57:22 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---INFO] PASSED [ 31%]
02:57:34 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---WARN] PASSED [ 31%]
02:57:46 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ERROR] PASSED [ 31%]
02:57:59 test/integration/clitest/test_import.py::TestImport::testImportOutputDefault PASSED [ 31%]
02:58:11 test/integration/clitest/test_import.py::TestImport::testImportOutputYaml PASSED [ 31%]
02:58:23 test/integration/clitest/test_import.py::TestImport::testImportOutputLegacy PASSED [ 31%]
02:58:36 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[1] PASSED [ 31%]
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02:59:17 test/integration/clitest/test_import.py::TestImport::testImportAsRoot PASSED [ 32%]
02:59:32 test/integration/clitest/test_import.py::TestImport::testImportMultiGroup PASSED [ 32%]
02:59:46 test/integration/clitest/test_import.py::TestImport::testImportAsRootMultiGroup PASSED [ 32%]
02:59:58 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image] PASSED [ 32%]
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03:00:35 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-n] PASSED [ 32%]
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03:01:12 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--name] PASSED [ 32%]
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03:05:20 test/integration/clitest/test_import.py::TestImport::testNoThumbnails[--no-thumbnails] PASSED [ 33%]
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03:05:46 test/integration/clitest/test_import.py::TestImport::testSkipArguments[] PASSED [ 33%]
03:05:48 test/integration/clitest/test_import.py::TestImport::testSkipArguments[all] PASSED [ 33%]
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03:06:28 test/integration/clitest/test_import.py::TestImport::testSkipArguments[upgrade] PASSED [ 33%]
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03:06:53 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Dataset-test.fake--d] PASSED [ 33%]
03:07:05 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] PASSED [ 33%]
03:07:17 test/integration/clitest/test_import.py::TestImport::testEncryption[] PASSED [ 34%]
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03:07:55 test/integration/clitest/test_import.py::TestImport::testParallelUpload PASSED [ 34%]
03:08:10 test/integration/clitest/test_import.py::TestImport::testParallelFileset PASSED [ 34%]
03:08:34 test/integration/clitest/test_import.py::TestImport::testBulkImportLogs PASSED [ 34%]
03:08:50 test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk PASSED [ 34%]
03:08:52 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[active] PASSED [ 34%]
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03:08:52 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[create] PASSED [ 34%]
03:08:52 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[getdn] PASSED [ 34%]
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03:08:57 test/integration/clitest/test_metadata.py::TestMetadata::test_get_identifiers PASSED [ 34%]
03:09:00 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[False] PASSED [ 34%]
03:09:04 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[True] PASSED [ 34%]
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03:09:14 test/integration/clitest/test_metadata.py::TestMetadata::test_get_original PASSED [ 34%]
03:09:17 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[False] PASSED [ 34%]
03:09:21 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[True] PASSED [ 35%]
03:09:24 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[False] PASSED [ 35%]
03:09:27 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[True] PASSED [ 35%]
03:09:31 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[False] PASSED [ 35%]
03:09:34 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[True] PASSED [ 35%]
03:09:39 test/integration/clitest/test_metadata.py::TestMetadataControl::test_original PASSED [ 35%]
03:09:43 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[False] PASSED [ 35%]
03:09:46 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[True] PASSED [ 35%]
03:09:49 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[False] PASSED [ 35%]
03:09:53 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[True] PASSED [ 35%]
03:09:56 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[False] PASSED [ 35%]
03:09:59 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[True] PASSED [ 35%]
03:10:03 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[False] PASSED [ 35%]
03:10:06 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[True] PASSED [ 35%]
03:10:09 test/integration/clitest/test_metadata.py::TestMetadataControl::test_pixelsize PASSED [ 35%]
03:10:11 test/integration/clitest/test_obj.py::TestObj::test_create_from_file PASSED [ 35%]
03:10:11 test/integration/clitest/test_obj.py::TestObj::test_create_from_args PASSED [ 35%]
03:10:11 test/integration/clitest/test_obj.py::TestObj::test_linkage PASSED [ 35%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_linkage_via_variables PASSED [ 35%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_required[input0] PASSED [ 35%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_required[input1] PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_required[input2] PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_link_annotation PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_new_get_and_update PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_fail_leading_numbers_argument PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_argument_with_letters_and_numbers PASSED [ 36%]
03:10:12 test/integration/clitest/test_obj.py::TestObj::test_new_and_get_obj PASSED [ 36%]
03:10:16 test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value PASSED [ 36%]
03:10:16 test/integration/clitest/test_obj.py::TestObj::test_get_unknown_and_empty_field PASSED [ 36%]
03:10:16 test/integration/clitest/test_obj.py::TestObj::test_get_fields PASSED [ 36%]
03:10:16 test/integration/clitest/test_obj.py::TestObj::test_get_list_field PASSED [ 36%]
03:10:17 test/integration/clitest/test_obj.py::TestObj::test_list_get PASSED [ 36%]
03:10:17 test/integration/clitest/test_obj.py::TestObj::test_map_mods PASSED [ 36%]
03:10:17 test/integration/clitest/test_obj.py::TestObj::test_nulling PASSED [ 36%]
03:10:17 test/integration/clitest/test_obj.py::TestObj::test_newlines PASSED [ 36%]
03:10:19 test/integration/clitest/test_pyramids.py::TestRemovePyramids::test_removepyramids_admin_only PASSED [ 36%]
03:10:21 test/integration/clitest/test_pyramids.py::TestRemovePyramidsRestrictedAdmin::test_removepyramids_restricted_admin PASSED [ 36%]
03:10:30 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_little_endian PASSED [ 36%]
03:10:38 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_imported_after_future PASSED [ 36%]
03:10:54 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_limit PASSED [ 36%]
03:11:14 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_not_valid_limit PASSED [ 36%]
03:11:14 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_manual SKIPPED [ 37%]
03:11:31 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove__pre_fs_pyramids PASSED [ 37%]
03:11:50 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_big_endian PASSED [ 37%]
03:12:22 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids PASSED [ 37%]
03:12:42 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_check_thumbnails PASSED [ 37%]
03:12:44 test/integration/clitest/test_script.py::TestScript::testList PASSED [ 37%]
03:12:56 test/integration/clitest/test_script.py::TestScript::testDemo PASSED [ 37%]
03:13:06 test/integration/clitest/test_script.py::TestScript::testFullSession PASSED [ 37%]
03:13:27 test/integration/clitest/test_script.py::TestScript::testReplace PASSED [ 37%]
03:13:28 test/integration/clitest/test_script.py::TestScript::testReplaceOfficial PASSED [ 37%]
03:13:35 test/integration/clitest/test_search.py::TestSearch::test_search_basic PASSED [ 37%]
03:13:41 test/integration/clitest/test_search.py::TestSearch::test_search_wildcard PASSED [ 37%]
03:13:47 test/integration/clitest/test_search.py::TestSearch::test_search_name_field PASSED [ 37%]
03:13:53 test/integration/clitest/test_search.py::TestSearch::test_search_description_field PASSED [ 37%]
03:13:59 test/integration/clitest/test_search.py::TestSearch::test_search_style PASSED [ 37%]
03:14:05 test/integration/clitest/test_search.py::TestSearch::test_search_ids_only PASSED [ 37%]
03:14:12 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data0] PASSED [ 37%]
03:14:18 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data1] PASSED [ 37%]
03:14:24 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data0] PASSED [ 37%]
03:14:30 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data1] PASSED [ 37%]
03:14:36 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data2] PASSED [ 38%]
03:14:42 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data3] PASSED [ 38%]
03:14:48 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data4] PASSED [ 38%]
03:14:54 test/integration/clitest/test_search.py::TestSearch::test_search_no_parse PASSED [ 38%]
03:14:56 test/integration/clitest/test_search.py::TestSearch::test_search_dataset_acquisition PASSED [ 38%]
03:15:02 test/integration/clitest/test_search.py::TestSearch::test_search_index_by_user PASSED [ 38%]
03:15:06 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True] PASSED [ 38%]
03:15:08 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False] PASSED [ 38%]
03:15:10 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True] PASSED [ 38%]
03:15:12 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False] PASSED [ 38%]
03:15:20 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----] PASSED [ 38%]
03:15:29 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---] PASSED [ 38%]
03:15:37 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--] PASSED [ 38%]
03:15:46 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--] PASSED [ 38%]
03:15:48 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True] PASSED [ 38%]
03:15:50 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False] PASSED [ 38%]
03:15:52 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True] PASSED [ 38%]
03:15:54 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False] PASSED [ 38%]
03:15:56 test/integration/clitest/test_sessions.py::TestSessions::testGroup PASSED [ 38%]
03:15:58 test/integration/clitest/test_sessions.py::TestSessions::testTimeout PASSED [ 38%]
03:15:58 test/integration/clitest/test_sessions.py::TestSessions::testFile PASSED [ 39%]
03:16:00 test/integration/clitest/test_sessions.py::TestSessions::testKey PASSED [ 39%]
03:16:02 test/integration/clitest/test_sessions.py::TestSessions::testWho[user] PASSED [ 39%]
03:16:02 test/integration/clitest/test_sessions.py::TestSessions::testWho[root] PASSED [ 39%]
03:16:04 test/integration/clitest/test_sessions.py::TestSessions::test_open PASSED [ 39%]
03:16:06 test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id PASSED [ 39%]
03:16:10 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo PASSED [ 39%]
03:16:14 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo PASSED [ 39%]
03:16:16 test/integration/clitest/test_sessions.py::TestSessions::test_close PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None-None] PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None---name] PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description-None] PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description---name] PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None-None] PASSED [ 39%]
03:16:18 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None---name] PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc-None] PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc---name] PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLoadTag PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLoadTagset PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLink[Image] PASSED [ 39%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLink[Dataset] PASSED [ 40%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLink[Project] PASSED [ 40%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLink[Screen] PASSED [ 40%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLink[Plate] PASSED [ 40%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidObject PASSED [ 40%]
03:16:19 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidTag PASSED [ 40%]
03:16:26 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-admin] PASSED [ 40%]
03:16:30 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-owner] PASSED [ 40%]
03:16:34 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-member] PASSED [ 40%]
03:16:38 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-admin] PASSED [ 40%]
03:16:42 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-owner] PASSED [ 40%]
03:16:46 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-member] PASSED [ 40%]
03:16:50 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-admin] PASSED [ 40%]
03:16:54 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-owner] PASSED [ 40%]
03:16:58 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-member] PASSED [ 40%]
03:17:02 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-admin] PASSED [ 40%]
03:17:06 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-owner] PASSED [ 40%]
03:17:10 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-member] PASSED [ 40%]
03:17:14 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-admin] PASSED [ 40%]
03:17:18 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-owner] PASSED [ 40%]
03:17:22 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-member] PASSED [ 40%]
03:17:27 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-admin] PASSED [ 41%]
03:17:31 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-owner] PASSED [ 41%]
03:17:35 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-member] PASSED [ 41%]
03:17:40 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-admin] PASSED [ 41%]
03:17:44 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-owner] PASSED [ 41%]
03:17:48 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-member] PASSED [ 41%]
03:17:52 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-admin] PASSED [ 41%]
03:17:57 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-owner] PASSED [ 41%]
03:18:01 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-member] PASSED [ 41%]
03:18:05 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-admin] PASSED [ 41%]
03:18:09 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-owner] PASSED [ 41%]
03:18:13 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-member] PASSED [ 41%]
03:18:17 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-admin] PASSED [ 41%]
03:18:22 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-owner] PASSED [ 41%]
03:18:26 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-member] PASSED [ 41%]
03:18:30 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-admin] PASSED [ 41%]
03:18:34 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-owner] PASSED [ 41%]
03:18:38 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-member] PASSED [ 41%]
03:18:42 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-admin] PASSED [ 41%]
03:18:47 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-owner] PASSED [ 41%]
03:18:51 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-member] PASSED [ 42%]
03:18:53 test/integration/clitest/test_tag.py::TestTagList::testList[] PASSED [ 42%]
03:18:53 test/integration/clitest/test_tag.py::TestTagList::testList[--nopage] PASSED [ 42%]
03:18:53 test/integration/clitest/test_tag.py::TestTagList::testListSets[] PASSED [ 42%]
03:18:53 test/integration/clitest/test_tag.py::TestTagList::testListSets[--nopage] PASSED [ 42%]
03:18:55 test/integration/clitest/test_upload.py::TestUpload::testUploadSingleFile PASSED [ 42%]
03:18:56 test/integration/clitest/test_upload.py::TestUpload::testUploadMultipleFiles PASSED [ 42%]
03:18:56 test/integration/clitest/test_upload.py::TestUpload::testUploadBadFile PASSED [ 42%]
03:19:11 test/integration/clitest/test_user.py::TestUser::testList[None-None] PASSED [ 42%]
03:19:21 test/integration/clitest/test_user.py::TestUser::testList[None-id] PASSED [ 42%]
03:19:31 test/integration/clitest/test_user.py::TestUser::testList[None-login] PASSED [ 42%]
03:19:41 test/integration/clitest/test_user.py::TestUser::testList[None-first-name] PASSED [ 42%]
03:19:51 test/integration/clitest/test_user.py::TestUser::testList[None-last-name] PASSED [ 42%]
03:20:00 test/integration/clitest/test_user.py::TestUser::testList[None-email] PASSED [ 42%]
03:20:10 test/integration/clitest/test_user.py::TestUser::testList[count-None] PASSED [ 42%]
03:20:20 test/integration/clitest/test_user.py::TestUser::testList[count-id] PASSED [ 42%]
03:20:30 test/integration/clitest/test_user.py::TestUser::testList[count-login] PASSED [ 42%]
03:20:40 test/integration/clitest/test_user.py::TestUser::testList[count-first-name] PASSED [ 42%]
03:20:49 test/integration/clitest/test_user.py::TestUser::testList[count-last-name] PASSED [ 42%]
03:20:59 test/integration/clitest/test_user.py::TestUser::testList[count-email] PASSED [ 42%]
03:21:09 test/integration/clitest/test_user.py::TestUser::testList[long-None] PASSED [ 43%]
03:21:18 test/integration/clitest/test_user.py::TestUser::testList[long-id] PASSED [ 43%]
03:21:29 test/integration/clitest/test_user.py::TestUser::testList[long-login] PASSED [ 43%]
03:21:38 test/integration/clitest/test_user.py::TestUser::testList[long-first-name] PASSED [ 43%]
03:21:49 test/integration/clitest/test_user.py::TestUser::testList[long-last-name] PASSED [ 43%]
03:21:59 test/integration/clitest/test_user.py::TestUser::testList[long-email] PASSED [ 43%]
03:22:02 test/integration/clitest/test_user.py::TestUser::testListWithStyles[None] PASSED [ 43%]
03:22:06 test/integration/clitest/test_user.py::TestUser::testListWithStyles[sql] PASSED [ 43%]
03:22:09 test/integration/clitest/test_user.py::TestUser::testListWithStyles[csv] PASSED [ 43%]
03:22:13 test/integration/clitest/test_user.py::TestUser::testListWithStyles[plain] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testListWithStyles[json] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoNoArgument PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoArgument[id] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoArgument[omeName] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-id] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-name] PASSED [ 43%]
03:22:16 test/integration/clitest/test_user.py::TestUser::testInfoInvalidUser PASSED [ 43%]
03:22:19 test/integration/clitest/test_user.py::TestUser::testListGroupsNoArgument PASSED [ 43%]
03:22:22 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[id] PASSED [ 43%]
03:22:25 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[omeName] PASSED [ 43%]
03:22:28 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-id] PASSED [ 44%]
03:22:31 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-name] PASSED [ 44%]
03:22:31 test/integration/clitest/test_user.py::TestUser::testListGroupsInvalidArgument PASSED [ 44%]
03:22:34 test/integration/clitest/test_user.py::TestUser::testEmail[None] PASSED [ 44%]
03:22:37 test/integration/clitest/test_user.py::TestUser::testEmail[-1] PASSED [ 44%]
03:22:41 test/integration/clitest/test_user.py::TestUser::testEmail[--one] PASSED [ 44%]
03:22:47 test/integration/clitest/test_user.py::TestUser::testPassword[True] PASSED [ 44%]
03:22:47 test/integration/clitest/test_user.py::TestUser::testPassword[False] PASSED [ 44%]
03:22:47 test/integration/clitest/test_user.py::TestUser::testAddAdminOnly PASSED [ 44%]
03:22:54 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---id] PASSED [ 44%]
03:22:56 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---name] PASSED [ 44%]
03:22:58 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---id] PASSED [ 44%]
03:23:00 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---name] PASSED [ 44%]
03:23:02 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---id] PASSED [ 44%]
03:23:04 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---name] PASSED [ 44%]
03:23:06 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---id] PASSED [ 44%]
03:23:08 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---name] PASSED [ 44%]
03:23:10 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---id] PASSED [ 44%]
03:23:12 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---name] PASSED [ 44%]
03:23:14 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---id] PASSED [ 44%]
03:23:16 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---name] PASSED [ 44%]
03:23:18 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---id] PASSED [ 45%]
03:23:20 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---name] PASSED [ 45%]
03:23:22 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---id] PASSED [ 45%]
03:23:24 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---name] PASSED [ 45%]
03:23:26 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---id] PASSED [ 45%]
03:23:28 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---name] PASSED [ 45%]
03:23:30 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---id] PASSED [ 45%]
03:23:32 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---name] PASSED [ 45%]
03:23:34 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---id] PASSED [ 45%]
03:23:36 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---name] PASSED [ 45%]
03:23:38 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---id] PASSED [ 45%]
03:23:40 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---name] PASSED [ 45%]
03:23:42 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---id] PASSED [ 45%]
03:23:44 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---name] PASSED [ 45%]
03:23:46 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---id] PASSED [ 45%]
03:23:48 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---name] PASSED [ 45%]
03:23:50 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---id] PASSED [ 45%]
03:23:52 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---name] PASSED [ 45%]
03:23:54 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---id] PASSED [ 45%]
03:23:56 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---name] PASSED [ 45%]
03:23:58 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---id] PASSED [ 46%]
03:24:00 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---name] PASSED [ 46%]
03:24:02 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---id] PASSED [ 46%]
03:24:04 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---name] PASSED [ 46%]
03:24:07 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---id] PASSED [ 46%]
03:24:08 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---name] PASSED [ 46%]
03:24:10 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---id] PASSED [ 46%]
03:24:13 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---name] PASSED [ 46%]
03:24:14 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---id] PASSED [ 46%]
03:24:17 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---name] PASSED [ 46%]
03:24:19 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---id] PASSED [ 46%]
03:24:21 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---name] PASSED [ 46%]
03:24:23 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---id] PASSED [ 46%]
03:24:25 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---name] PASSED [ 46%]
03:24:27 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---id] PASSED [ 46%]
03:24:29 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---name] PASSED [ 46%]
03:24:29 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None-None] PASSED [ 46%]
03:24:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None--m] PASSED [ 46%]
03:24:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None---middlename] PASSED [ 46%]
03:24:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e-None] PASSED [ 46%]
03:24:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e--m] PASSED [ 47%]
03:24:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e---middlename] PASSED [ 47%]
03:24:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email-None] PASSED [ 47%]
03:24:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email--m] PASSED [ 47%]
03:24:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email---middlename] PASSED [ 47%]
03:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None-None] PASSED [ 47%]
03:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None--m] PASSED [ 47%]
03:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None---middlename] PASSED [ 47%]
03:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e-None] PASSED [ 47%]
03:24:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e--m] PASSED [ 47%]
03:24:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e---middlename] PASSED [ 47%]
03:24:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email-None] PASSED [ 47%]
03:24:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email--m] PASSED [ 47%]
03:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email---middlename] PASSED [ 47%]
03:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None-None] PASSED [ 47%]
03:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None--m] PASSED [ 47%]
03:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None---middlename] PASSED [ 47%]
03:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e-None] PASSED [ 47%]
03:24:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e--m] PASSED [ 47%]
03:24:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e---middlename] PASSED [ 47%]
03:24:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email-None] PASSED [ 48%]
03:24:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email--m] PASSED [ 48%]
03:24:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email---middlename] PASSED [ 48%]
03:24:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None-None] PASSED [ 48%]
03:24:37 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None--m] PASSED [ 48%]
03:24:38 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None---middlename] PASSED [ 48%]
03:24:39 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e-None] PASSED [ 48%]
03:24:40 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e--m] PASSED [ 48%]
03:24:41 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e---middlename] PASSED [ 48%]
03:24:41 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email-None] PASSED [ 48%]
03:24:42 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email--m] PASSED [ 48%]
03:24:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email---middlename] PASSED [ 48%]
03:24:44 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None-None] PASSED [ 48%]
03:24:45 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None--m] PASSED [ 48%]
03:24:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None---middlename] PASSED [ 48%]
03:24:47 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e-None] PASSED [ 48%]
03:24:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e--m] PASSED [ 48%]
03:24:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e---middlename] PASSED [ 48%]
03:24:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email-None] PASSED [ 48%]
03:24:50 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email--m] PASSED [ 48%]
03:24:51 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email---middlename] PASSED [ 48%]
03:24:52 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None-None] PASSED [ 49%]
03:24:53 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None--m] PASSED [ 49%]
03:24:54 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None---middlename] PASSED [ 49%]
03:24:55 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e-None] PASSED [ 49%]
03:24:56 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e--m] PASSED [ 49%]
03:24:56 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e---middlename] PASSED [ 49%]
03:24:57 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email-None] PASSED [ 49%]
03:24:58 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email--m] PASSED [ 49%]
03:24:59 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email---middlename] PASSED [ 49%]
03:25:00 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None-None] PASSED [ 49%]
03:25:01 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None--m] PASSED [ 49%]
03:25:02 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None---middlename] PASSED [ 49%]
03:25:03 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e-None] PASSED [ 49%]
03:25:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e--m] PASSED [ 49%]
03:25:05 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e---middlename] PASSED [ 49%]
03:25:06 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email-None] PASSED [ 49%]
03:25:07 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email--m] PASSED [ 49%]
03:25:08 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email---middlename] PASSED [ 49%]
03:25:09 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None-None] PASSED [ 49%]
03:25:10 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None--m] PASSED [ 49%]
03:25:11 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None---middlename] PASSED [ 50%]
03:25:12 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e-None] PASSED [ 50%]
03:25:13 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e--m] PASSED [ 50%]
03:25:14 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e---middlename] PASSED [ 50%]
03:25:15 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email-None] PASSED [ 50%]
03:25:16 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email--m] PASSED [ 50%]
03:25:17 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email---middlename] PASSED [ 50%]
03:25:18 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None-None] PASSED [ 50%]
03:25:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None--m] PASSED [ 50%]
03:25:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None---middlename] PASSED [ 50%]
03:25:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e-None] PASSED [ 50%]
03:25:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e--m] PASSED [ 50%]
03:25:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e---middlename] PASSED [ 50%]
03:25:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email-None] PASSED [ 50%]
03:25:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email--m] PASSED [ 50%]
03:25:27 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email---middlename] PASSED [ 50%]
03:25:27 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[id] PASSED [ 50%]
03:25:28 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[name] PASSED [ 50%]
03:25:28 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-id] PASSED [ 50%]
03:25:29 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-name] PASSED [ 50%]
03:25:30 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True-None] PASSED [ 51%]
03:25:30 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True--P] PASSED [ 51%]
03:25:31 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True---userpassword] PASSED [ 51%]
03:25:31 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False-None] PASSED [ 51%]
03:25:32 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False--P] PASSED [ 51%]
03:25:32 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False---userpassword] PASSED [ 51%]
03:25:32 test/integration/clitest/test_user.py::TestUserRoot::testAddNoPassword PASSED [ 51%]
03:25:41 test/integration/clitest/test_user.py::TestUserRoot::testPassword[True] PASSED [ 51%]
03:25:43 test/integration/clitest/test_user.py::TestUserRoot::testPassword[False] PASSED [ 51%]
03:25:46 test/integration/fstest/test_rename.py::TestRename::test_dir PASSED [ 51%]
03:25:56 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data0] PASSED [ 51%]
03:26:07 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data1] PASSED [ 51%]
03:26:17 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data2] PASSED [ 51%]
03:26:27 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data3] PASSED [ 51%]
03:26:39 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data4] PASSED [ 51%]
03:26:44 test/integration/fstest/test_rename.py::TestRename::test_rename_annotation PASSED [ 51%]
03:26:45 test/integration/fstest/test_rename.py::TestRename::test_prep_and_delete PASSED [ 51%]
03:26:50 test/integration/gatewaytest/test_annotation.py::testSameOwner PASSED [ 51%]
03:26:52 test/integration/gatewaytest/test_annotation.py::testCommentAnnotation PASSED [ 51%]
03:26:53 test/integration/gatewaytest/test_annotation.py::testNonDefGroupAnnotation PASSED [ 51%]
03:26:55 test/integration/gatewaytest/test_annotation.py::testTimestampAnnotation PASSED [ 52%]
03:26:56 test/integration/gatewaytest/test_annotation.py::testBooleanAnnotation PASSED [ 52%]
03:26:57 test/integration/gatewaytest/test_annotation.py::testLongAnnotation PASSED [ 52%]
03:26:58 test/integration/gatewaytest/test_annotation.py::testMapAnnotation PASSED [ 52%]
03:27:00 test/integration/gatewaytest/test_annotation.py::testDualLinkedAnnotation PASSED [ 52%]
03:27:01 test/integration/gatewaytest/test_annotation.py::testListAnnotations PASSED [ 52%]
03:27:03 test/integration/gatewaytest/test_annotation.py::testFileAnnotation PASSED [ 52%]
03:27:04 test/integration/gatewaytest/test_annotation.py::testFileAnnotationNoName PASSED [ 52%]
03:27:07 test/integration/gatewaytest/test_annotation.py::testFileAnnotationSpeed PASSED [ 52%]
03:27:08 test/integration/gatewaytest/test_annotation.py::testFileAnnNonDefaultGroup PASSED [ 52%]
03:27:10 test/integration/gatewaytest/test_annotation.py::testUnlinkAnnotation PASSED [ 52%]
03:27:11 test/integration/gatewaytest/test_annotation.py::testAnnotationCount PASSED [ 52%]
03:27:13 test/integration/gatewaytest/test_chgrp.py::testImageChgrp PASSED [ 52%]
03:27:14 test/integration/gatewaytest/test_chgrp.py::testDatasetChgrp PASSED [ 52%]
03:27:16 test/integration/gatewaytest/test_chgrp.py::testPDIChgrp PASSED [ 52%]
03:27:18 test/integration/gatewaytest/test_chgrp.py::testTwoDatasetsChgrpToProject PASSED [ 52%]
03:27:19 test/integration/gatewaytest/test_chgrp.py::testMultiDatasetDoAll PASSED [ 52%]
03:27:22 test/integration/gatewaytest/test_chmod.py::TestChmodGroup::testChmod PASSED [ 52%]
03:27:32 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadOnly PASSED [ 52%]
03:27:34 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadAnnotate PASSED [ 52%]
03:27:36 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testGroupMinusOne PASSED [ 52%]
03:27:37 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadWrite PASSED [ 53%]
03:27:40 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testDelete8723 PASSED [ 53%]
03:27:43 test/integration/gatewaytest/test_chmod.py::TestManualCreateEdit::testReadOnly PASSED [ 53%]
03:27:44 test/integration/gatewaytest/test_chmod.py::Test8800::testWithBlitzWrappers PASSED [ 53%]
03:27:45 test/integration/gatewaytest/test_chmod.py::Test8800::testWithoutWrappers PASSED [ 53%]
03:27:49 test/integration/gatewaytest/test_chmod.py::TestDefaultSetup::testAuthorCanEdit PASSED [ 53%]
03:27:56 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_project PASSED [ 53%]
03:28:01 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_pdi PASSED [ 53%]
03:28:03 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[foo] PASSED [ 53%]
03:28:05 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[False] PASSED [ 53%]
03:28:07 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[false] PASSED [ 53%]
03:28:10 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[True] PASSED [ 53%]
03:28:12 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[true] PASSED [ 53%]
03:28:14 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[] PASSED [ 53%]
03:28:17 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[None] PASSED [ 53%]
03:28:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMultiProcessSession PASSED [ 53%]
03:30:34 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose ERROR [ 53%]
03:32:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects ERROR [ 53%]
03:32:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testCloseSession PASSED [ 53%]
03:32:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMiscellaneous PASSED [ 53%]
03:32:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClient PASSED [ 54%]
03:32:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientNoSessionWithIdentity PASSED [ 54%]
03:32:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientSessionWithoutIdentity PASSED [ 54%]
03:32:47 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSessionId PASSED [ 54%]
03:32:47 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectWithSessionId PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithSecureClient PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUnsecureClient PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[None] PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[False] PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[True] PASSED [ 54%]
03:32:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureMisMatch PASSED [ 54%]
03:32:49 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testHost PASSED [ 54%]
03:32:50 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsUnwrapped PASSED [ 54%]
03:32:50 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjects PASSED [ 54%]
03:32:50 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsWait PASSED [ 54%]
03:32:50 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsDryRun PASSED [ 54%]
03:32:50 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteAnnotatedFileAnnotation PASSED [ 54%]
03:32:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect PASSED [ 54%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountArchivedFiles PASSED [ 54%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountFilesetFiles PASSED [ 54%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountImportedImageFiles PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfo PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfoWithAnnotations PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFiles PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFilesInfo PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfo PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoWithAnnotations PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultiple PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultipleWithAnnotations PASSED [ 55%]
03:32:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFileset PASSED [ 55%]
03:32:54 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFilePaths PASSED [ 55%]
03:32:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountArchivedFiles PASSED [ 55%]
03:32:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountFilesetFiles PASSED [ 55%]
03:32:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountImportedImageFiles PASSED [ 55%]
03:32:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedFilesInfo PASSED [ 55%]
03:32:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles PASSED [ 55%]
03:32:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFiles PASSED [ 55%]
03:32:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFilesInfo PASSED [ 55%]
03:32:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfo PASSED [ 55%]
03:32:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfoMultiple PASSED [ 56%]
03:32:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFileset PASSED [ 56%]
03:32:57 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFilePaths PASSED [ 56%]
03:32:58 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteAnnotation PASSED [ 56%]
03:32:59 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteImage PASSED [ 56%]
03:33:01 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testIllegalObjTypeInt PASSED [ 56%]
03:33:01 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeUnicode PASSED [ 56%]
03:33:01 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeString PASSED [ 56%]
03:33:01 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindProject PASSED [ 56%]
03:35:12 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter ERROR [ 56%]
03:35:13 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindAnnotation PASSED [ 56%]
03:35:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testSearchObjects PASSED [ 56%]
03:35:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListProjects PASSED [ 56%]
03:35:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testPagination PASSED [ 56%]
03:35:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetDatasetsByProject PASSED [ 56%]
03:35:22 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[True] PASSED [ 56%]
03:35:24 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[False] PASSED [ 56%]
03:35:24 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListColleagues PASSED [ 56%]
03:35:27 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testFindExperimenterWithGroups PASSED [ 56%]
03:35:31 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[True] PASSED [ 56%]
03:35:36 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[False] PASSED [ 56%]
03:35:38 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimenter PASSED [ 57%]
03:37:48 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations ERROR [ 57%]
03:39:59 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage ERROR [ 57%]
03:42:10 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] ERROR [ 57%]
03:44:21 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] ERROR [ 57%]
03:46:32 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] ERROR [ 57%]
03:48:43 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] ERROR [ 57%]
03:48:43 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetProject PASSED [ 57%]
03:50:54 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal ERROR [ 57%]
03:50:55 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-True] PASSED [ 57%]
03:50:55 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-False] PASSED [ 57%]
03:50:56 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-True] PASSED [ 57%]
03:50:56 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-False] PASSED [ 57%]
03:50:56 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testOrderById PASSED [ 57%]
03:50:57 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] FAILED [ 57%]
03:50:57 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] FAILED [ 57%]
03:50:57 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] FAILED [ 57%]
03:50:57 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] FAILED [ 57%]
03:50:58 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] FAILED [ 57%]
03:51:01 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsLeader PASSED [ 57%]
03:51:01 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsMember PASSED [ 58%]
03:51:04 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsMemberOf PASSED [ 58%]
03:51:04 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwner PASSED [ 58%]
03:51:05 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMember PASSED [ 58%]
03:51:05 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated PASSED [ 58%]
03:51:07 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated PASSED [ 58%]
03:51:09 test/integration/gatewaytest/test_get_objects.py::TestListParents::testSupportedObjects PASSED [ 58%]
03:51:11 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsPDI PASSED [ 58%]
03:51:14 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsSPW PASSED [ 58%]
03:51:16 test/integration/gatewaytest/test_get_objects.py::TestListParents::testExperimenterListParents PASSED [ 58%]
03:51:16 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testColorHolder PASSED [ 58%]
03:51:16 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testOmeroType PASSED [ 58%]
03:51:16 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testSplitHTMLColor PASSED [ 58%]
03:53:26 test/integration/gatewaytest/test_image.py::TestImage::testThumbnail ERROR [ 58%]
03:55:37 test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet ERROR [ 58%]
03:57:48 test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels ERROR [ 58%]
03:59:59 test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel ERROR [ 58%]
04:02:10 test/integration/gatewaytest/test_image.py::TestImage::testLinePlots ERROR [ 58%]
04:04:21 test/integration/gatewaytest/test_image.py::TestImage::testProjections ERROR [ 58%]
04:06:32 test/integration/gatewaytest/test_image.py::TestImage::testProperties ERROR [ 58%]
04:08:43 test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits ERROR [ 59%]
04:10:55 test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue ERROR [ 59%]
04:13:05 test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits ERROR [ 59%]
04:15:16 test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits ERROR [ 59%]
04:17:27 test/integration/gatewaytest/test_image.py::TestImage::testShortname ERROR [ 59%]
04:19:39 test/integration/gatewaytest/test_image.py::TestImage::testImageDate ERROR [ 59%]
04:21:50 test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal ERROR [ 59%]
04:24:01 test/integration/gatewaytest/test_image.py::TestImage::testExport ERROR [ 59%]
04:26:12 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion ERROR [ 59%]
04:28:23 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution ERROR [ 59%]
04:30:34 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution ERROR [ 59%]
04:32:45 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView ERROR [ 59%]
04:34:57 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size ERROR [ 59%]
04:34:58 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDate PASSED [ 59%]
04:34:58 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDateNoAcquisitionDate PASSED [ 59%]
04:34:58 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testSimpleMarshal PASSED [ 59%]
04:35:01 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelLabel PASSED [ 59%]
04:35:01 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelEmissionWaveLabel PASSED [ 59%]
04:35:02 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelNoLabel PASSED [ 59%]
04:35:03 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testThrowException PASSED [ 59%]
04:35:03 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testPrepareRenderingEngine PASSED [ 60%]
04:35:03 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannels PASSED [ 60%]
04:35:03 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannelsNoRe PASSED [ 60%]
04:35:05 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetRdefId PASSED [ 60%]
04:35:10 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_update_admin_privileges PASSED [ 60%]
04:35:14 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_full_admin_privileges PASSED [ 60%]
04:37:24 test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore ERROR [ 60%]
04:39:35 test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo ERROR [ 60%]
04:41:46 test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType ERROR [ 60%]
04:43:57 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile ERROR [ 60%]
04:46:08 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane ERROR [ 60%]
04:48:19 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane ERROR [ 60%]
04:50:30 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose ERROR [ 60%]
04:52:42 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth ERROR [ 60%]
04:54:53 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram ERROR [ 60%]
04:54:56 test/integration/gatewaytest/test_plate_wrapper.py::TestPlateWrapper::testGetGridSize PASSED [ 60%]
04:57:07 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault ERROR [ 60%]
04:59:18 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized ERROR [ 60%]
05:01:29 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows ERROR [ 60%]
05:03:40 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax ERROR [ 60%]
05:05:52 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave ERROR [ 60%]
05:08:03 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy ERROR [ 61%]
05:10:14 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions ERROR [ 61%]
05:12:25 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs ERROR [ 61%]
05:14:36 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults ERROR [ 61%]
05:16:47 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings ERROR [ 61%]
05:18:58 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid ERROR [ 61%]
05:21:09 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk ERROR [ 61%]
05:23:20 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE ERROR [ 61%]
05:25:31 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE ERROR [ 61%]
05:27:43 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE ERROR [ 61%]
05:29:53 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] ERROR [ 61%]
05:32:04 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] ERROR [ 61%]
05:34:15 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService ERROR [ 61%]
05:36:27 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService ERROR [ 61%]
05:38:38 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE ERROR [ 61%]
05:38:41 test/integration/gatewaytest/test_search_objects.py::TestGetObject::testSearchObjects PASSED [ 61%]
05:38:43 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAuthor PASSED [ 61%]
05:38:45 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAdmin PASSED [ 61%]
05:38:49 test/integration/gatewaytest/test_services.py::TestTables::testTableRead PASSED [ 61%]
05:38:54 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_16 PASSED [ 61%]
05:38:57 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_96 PASSED [ 62%]
05:38:59 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_16 PASSED [ 62%]
05:39:02 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_96 PASSED [ 62%]
05:39:04 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_16 PASSED [ 62%]
05:39:07 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_96 PASSED [ 62%]
05:39:10 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_16 PASSED [ 62%]
05:39:13 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_96 PASSED [ 62%]
05:39:15 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_16 PASSED [ 62%]
05:39:18 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_96 PASSED [ 62%]
05:39:20 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_16 PASSED [ 62%]
05:39:23 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_96 PASSED [ 62%]
05:39:26 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_16 PASSED [ 62%]
05:39:29 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_96 PASSED [ 62%]
05:39:31 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_16 PASSED [ 62%]
05:39:34 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_96 PASSED [ 62%]
05:39:38 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_16 PASSED [ 62%]
05:39:43 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_96 PASSED [ 62%]
05:39:48 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_16 PASSED [ 62%]
05:39:53 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_96 PASSED [ 62%]
05:39:58 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_16 PASSED [ 62%]
05:40:03 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_96 PASSED [ 63%]
05:40:08 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_16 PASSED [ 63%]
05:40:12 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_96 PASSED [ 63%]
05:40:14 test/integration/gatewaytest/test_user.py::TestUser::testUsers PASSED [ 63%]
05:42:23 test/integration/gatewaytest/test_user.py::TestUser::testSaveAs FAILED [ 63%]
05:42:26 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupSave PASSED [ 63%]
05:42:37 test/integration/gatewaytest/test_user.py::TestUser::testGroupOverObjPermissions PASSED [ 63%]
05:44:46 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped ERROR [ 63%]
05:44:47 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testProjectWrapper PASSED [ 63%]
05:46:57 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper ERROR [ 63%]
05:46:57 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testExperimenterWrapper PASSED [ 63%]
05:49:08 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper ERROR [ 63%]
05:49:08 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperGetFileInChunks PASSED [ 63%]
05:49:08 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObj PASSED [ 63%]
05:49:09 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjContextManager PASSED [ 63%]
05:49:09 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjMultiple PASSED [ 63%]
05:49:09 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testSetters PASSED [ 63%]
05:49:10 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOther PASSED [ 63%]
05:49:12 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query PASSED [ 63%]
05:49:12 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query_duplicate PASSED [ 63%]
05:49:12 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_update_existing_mapann PASSED [ 64%]
05:49:14 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_local PASSED [ 64%]
05:49:14 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_remote PASSED [ 64%]
05:49:26 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates] PASSED [ 64%]
05:49:31 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Plate2Wells] PASSED [ 64%]
05:49:35 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images] PASSED [ 64%]
05:49:39 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing] PASSED [ 64%]
05:49:48 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset101Images] PASSED [ 64%]
05:49:56 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Project2Datasets] PASSED [ 64%]
05:50:00 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-GZIP] PASSED [ 64%]
05:50:01 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates] PASSED [ 64%]
05:50:01 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Plate2Wells] PASSED [ 64%]
05:50:02 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images] PASSED [ 64%]
05:50:02 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing] PASSED [ 64%]
05:50:07 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset101Images] PASSED [ 64%]
05:50:07 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Project2Datasets] PASSED [ 64%]
05:50:08 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-GZIP] PASSED [ 64%]
05:50:08 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates] PASSED [ 64%]
05:50:09 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Plate2Wells] PASSED [ 64%]
05:50:09 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images] PASSED [ 64%]
05:50:10 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing] PASSED [ 64%]
05:50:12 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset101Images] PASSED [ 65%]
05:50:12 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Project2Datasets] PASSED [ 65%]
05:50:13 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-GZIP] PASSED [ 65%]
05:50:18 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs] PASSED [ 65%]
05:50:23 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs2] PASSED [ 65%]
05:50:28 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsUnavailableHeader PASSED [ 65%]
05:50:32 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsFail PASSED [ 65%]
05:50:44 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[None] PASSED [ 65%]
05:50:56 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:51:07 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/mapr/gene] PASSED [ 65%]
05:51:19 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[None] PASSED [ 65%]
05:51:31 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:51:44 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/mapr/gene] PASSED [ 65%]
05:51:50 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-None] PASSED [ 65%]
05:51:57 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:52:04 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
05:52:11 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-None] PASSED [ 65%]
05:52:17 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:52:23 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
05:52:30 test/integration/metadata/test_populate.py::TestPopulateRois::testPopulateRoisPlate PASSED [ 65%]
05:52:32 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[yaml] PASSED [ 66%]
05:52:32 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[Yml] PASSED [ 66%]
05:52:32 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[json] PASSED [ 66%]
05:52:32 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[JS] PASSED [ 66%]
05:52:32 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format0] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format1] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format2] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format0] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format1] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format2] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-True] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-False] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-True] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-False] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_fromstring PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_invalidtype PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[json] PASSED [ 66%]
05:52:33 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[yaml] PASSED [ 66%]
05:52:36 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition PASSED [ 66%]
05:52:36 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript PASSED [ 66%]
05:52:54 test/integration/scriptstest/test_cli.py::TestCLI::testCLI PASSED [ 67%]
05:52:57 test/integration/scriptstest/test_coverage.py::TestCoverage::testGetScriptWithDetails PASSED [ 67%]
05:53:07 test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript PASSED [ 67%]
05:53:07 test/integration/scriptstest/test_coverage.py::TestCoverage::testUserCantUploadOfficalScript PASSED [ 67%]
05:53:25 test/integration/scriptstest/test_inputs.py::TestInputs::testInputs PASSED [ 67%]
05:53:29 test/integration/scriptstest/test_ping.py::TestPing::testPingViaISCript PASSED [ 67%]
05:53:30 test/integration/scriptstest/test_ping.py::TestPing::testPingParametersViaISCript PASSED [ 67%]
05:53:31 test/integration/scriptstest/test_ping.py::TestPing::testPingStdout PASSED [ 67%]
05:53:38 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdown PASSED [ 67%]
05:53:39 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdownOneway PASSED [ 67%]
05:53:41 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetResultsBeforeFinished PASSED [ 67%]
05:53:41 test/integration/scriptstest/test_ping.py::TestPing::testProcessorExpires PASSED [ 67%]
05:53:42 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetJob PASSED [ 67%]
05:53:43 test/integration/scriptstest/test_ping.py::TestPing::testProcessorStop PASSED [ 67%]
05:53:44 test/integration/scriptstest/test_ping.py::TestPing::testProcessorDetach PASSED [ 67%]
05:54:02 test/integration/scriptstest/test_rand.py::TestRand::testRand PASSED [ 67%]
05:54:04 test/integration/scriptstest/test_repo.py::TestScriptRepo::testScriptRepo PASSED [ 67%]
05:54:04 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetOfficialScripts PASSED [ 67%]
05:54:15 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetUserScripts PASSED [ 67%]
05:54:15 test/integration/scriptstest/test_repo.py::TestScriptRepo::testCantUndulyLoadScriptRepoFromUuid PASSED [ 67%]
05:54:15 test/integration/scriptstest/test_repo.py::TestScriptRepo::testMultipleScriptPathsNotSupported PASSED [ 68%]
05:54:15 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaOfficialScriptShowsUpInRepo PASSED [ 68%]
05:54:15 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaNonOfficialScriptDoesntShowUpInRepo PASSED [ 68%]
05:54:19 test/integration/scriptstest/test_roi_handling_utils.py::TestRoiHandlingUtils::test_get_line_data PASSED [ 68%]
05:54:24 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_split_image PASSED [ 68%]
05:54:27 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_to_image PASSED [ 68%]
05:54:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_convert_numpy_array PASSED [ 68%]
05:54:32 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f029a629a60>
05:54:32 Traceback (most recent call last):
05:54:32 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:54:32 self.close()
05:54:32 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:54:32 unlink(self.name)
05:54:32 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpylg79jb8.tiff'
05:54:32 PASSED [ 68%]
05:54:35 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f029a629a60>
05:54:35 Traceback (most recent call last):
05:54:35 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:54:35 self.close()
05:54:35 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:54:35 unlink(self.name)
05:54:35 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpw_sr2e4p.foo'
05:54:35 PASSED [ 68%]
05:54:38 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-tiff] PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-foo] PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[] PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[text/x-python] PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_calc_sha1 PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_file PASSED [ 68%]
05:54:41 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_file PASSED [ 68%]
05:54:44 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_get_objects PASSED [ 68%]
05:54:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_plane PASSED [ 68%]
05:54:48 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane_by_row PASSED [ 68%]
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06:03:02 test/integration/test_ishare.py::TestIShare::test1201 PASSED [ 79%]
06:03:04 test/integration/test_ishare.py::TestIShare::test1201b PASSED [ 79%]
06:03:11 test/integration/test_ishare.py::TestIShare::test1207 PASSED [ 79%]
06:03:14 test/integration/test_ishare.py::TestIShare::test1227 PASSED [ 79%]
06:03:19 test/integration/test_ishare.py::TestIShare::test2327 PASSED [ 79%]
06:03:23 test/integration/test_ishare.py::TestIShare::test2733 PASSED [ 79%]
06:03:35 test/integration/test_ishare.py::TestIShare::test2733Access PASSED [ 79%]
06:03:42 test/integration/test_ishare.py::TestIShare::test3214 PASSED [ 79%]
06:03:42 test/integration/test_ishare.py::TestIShare::test5711 PASSED [ 80%]
06:03:45 test/integration/test_ishare.py::TestIShare::test5756Raw PASSED [ 80%]
06:03:47 test/integration/test_ishare.py::TestIShare::test5756Wrapped PASSED [ 80%]
06:03:52 test/integration/test_ishare.py::TestIShare::test5851 PASSED [ 80%]
06:03:52 test/integration/test_ishare.py::TestIShare::test2513 PASSED [ 80%]
06:03:57 test/integration/test_ishare.py::TestIShare::test_OS_regular_user PASSED [ 80%]
06:04:04 test/integration/test_ishare.py::TestIShare::test_OS_non_member PASSED [ 80%]
06:04:09 test/integration/test_ishare.py::TestIShare::test_OS_admin_user PASSED [ 80%]
06:04:09 test/integration/test_ishare.py::TestIShare::test_bad_share PASSED [ 80%]
06:04:13 test/integration/test_ishare.py::TestIShare::test8513 PASSED [ 80%]
06:04:18 test/integration/test_ishare.py::TestIShare::test8704 PASSED [ 80%]
06:04:24 test/integration/test_ishare.py::TestIShare::test13018 PASSED [ 80%]
06:04:27 test/integration/test_itimeline.py::TestITimeline::testGeneral PASSED [ 80%]
06:04:29 test/integration/test_itimeline.py::TestITimeline::testCollaborativeTimeline PASSED [ 80%]
06:04:32 test/integration/test_itimeline.py::TestITimeline::test1173 PASSED [ 80%]
06:04:32 test/integration/test_itimeline.py::TestITimeline::test1175 PASSED [ 80%]
06:04:32 test/integration/test_itimeline.py::TestITimeline::test3234 PASSED [ 80%]
06:04:35 test/integration/test_itypes.py::TestTypes::testGetEnumerationTypes PASSED [ 80%]
06:04:35 test/integration/test_itypes.py::TestTypes::testAllEnumerations PASSED [ 80%]
06:04:35 test/integration/test_itypes.py::TestTypes::testGetEnumerationWithEntries PASSED [ 80%]
06:04:35 test/integration/test_itypes.py::TestTypes::testManageEnumeration PASSED [ 80%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testSaveArray PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testSaveCollection PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoOnCreation PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationTransient PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationManaged PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNewInstance PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNullInstance PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoUpdateInstance PASSED [ 81%]
06:04:37 test/integration/test_iupdate.py::TestIUpdate::testCannotSaveDeleted PASSED [ 81%]
06:04:41 test/integration/test_librarytest.py::TestLibrary::test9188 PASSED [ 81%]
06:04:45 test/integration/test_mail.py::TestMail::testEveryone PASSED [ 81%]
06:04:48 test/integration/test_mail.py::TestMail::testUserAdd PASSED [ 81%]
06:04:53 test/integration/test_mail.py::TestMail::testComment PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testMapStringField PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data0] PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data1] PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigEdit PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testEmptyItem PASSED [ 81%]
06:04:55 test/integration/test_mapannotation.py::TestMapAnnotation::testBigKeys PASSED [ 81%]
06:04:58 test/integration/test_metadatastore.py::TestMetadataStore::testBasicUsage PASSED [ 81%]
06:04:58 test/integration/test_metadatastore.py::TestMetadataStore::testMetadataService PASSED [ 82%]
06:05:05 test/integration/test_model51.py::TestModel51::testExposureTime PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testPhysicalSize PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[YOTTAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[ZETTAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[EXAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[PETAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[TERAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[GIGAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[MEGAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[KILOMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[HECTOMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[DECAMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[METER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[DECIMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[CENTIMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[MILLIMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[MICROMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[NANOMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[PICOMETER] PASSED [ 82%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[FEMTOMETER] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[ATTOMETER] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[ZEPTOMETER] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[YOCTOMETER] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[ANGSTROM] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[ASTRONOMICALUNIT] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[LIGHTYEAR] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[PARSEC] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[THOU] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[LINE] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[INCH] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[FOOT] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[YARD] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[MILE] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[POINT] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[PIXEL] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAllLengths[REFERENCEFRAME] PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testAsMapMethod PASSED [ 83%]
06:05:08 test/integration/test_model51.py::TestModel51::testMapEagerFetch PASSED [ 83%]
06:05:13 test/integration/test_model51.py::TestModel51::testMapSecurity PASSED [ 83%]
06:05:17 test/integration/test_model51.py::TestModel51::testUnitProjections PASSED [ 84%]
06:05:19 test/integration/test_permissions.py::TestPermissions::testLoginToPublicGroupTicket1940 PASSED [ 84%]
06:05:21 test/integration/test_permissions.py::TestPermissions::testLinkingInPrivateGroup PASSED [ 84%]
06:05:21 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePrivateGroup PASSED [ 84%]
06:05:21 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadOnly PASSED [ 84%]
06:05:21 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadAnnotate PASSED [ 84%]
06:05:21 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroup PASSED [ 84%]
06:05:22 test/integration/test_permissions.py::TestPermissions::testCreatGroupAndchangePermissions PASSED [ 84%]
06:05:25 test/integration/test_permissions.py::TestPermissions::testGroupOwners PASSED [ 84%]
06:05:25 test/integration/test_permissions.py::TestPermissions::testSearchAllGroups PASSED [ 84%]
06:05:27 test/integration/test_permissions.py::TestPermissions::testOGContextParameter PASSED [ 84%]
06:05:30 test/integration/test_permissions.py::TestPermissions::testOGSetImplicitContext PASSED [ 84%]
06:05:33 test/integration/test_permissions.py::TestPermissions::testOGSetProxyContext PASSED [ 84%]
06:05:35 test/integration/test_permissions.py::TestPermissions::testOGSetSecurityContext PASSED [ 84%]
06:05:38 test/integration/test_permissions.py::TestPermissions::testOGArg PASSED [ 84%]
06:05:40 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneNotExplicit PASSED [ 84%]
06:05:45 test/integration/test_permissions.py::TestPermissions::testPrivateGroupCallContext PASSED [ 84%]
06:05:45 test/integration/test_permissions.py::TestPermissions::testAdminCanQueryWithGroupMinusOneTicket9632 PASSED [ 84%]
06:05:50 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsAdmin PASSED [ 84%]
06:05:55 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsNonAdmin PASSED [ 84%]
06:05:55 test/integration/test_permissions.py::TestPermissions::testImmutablePermissions PASSED [ 84%]
06:05:55 test/integration/test_permissions.py::TestPermissions::testDisallow PASSED [ 85%]
06:05:55 test/integration/test_permissions.py::TestPermissions::testClientSet PASSED [ 85%]
06:05:58 test/integration/test_permissions.py::TestPermissions::testAdminUseOfRawPixelsBean PASSED [ 85%]
06:06:01 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadGroupMinusOne PASSED [ 85%]
06:06:03 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroup PASSED [ 85%]
06:06:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-admin] PASSED [ 85%]
06:06:15 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-owner] PASSED [ 85%]
06:06:20 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-member] PASSED [ 85%]
06:06:25 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-admin] PASSED [ 85%]
06:06:30 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-owner] PASSED [ 85%]
06:06:35 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-member] PASSED [ 85%]
06:06:40 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-admin] PASSED [ 85%]
06:06:44 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-owner] PASSED [ 85%]
06:06:49 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-member] PASSED [ 85%]
06:06:54 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-admin] PASSED [ 85%]
06:06:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-owner] PASSED [ 85%]
06:07:04 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-member] PASSED [ 85%]
06:07:09 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-admin] PASSED [ 85%]
06:07:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-owner] PASSED [ 85%]
06:07:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-member] PASSED [ 85%]
06:07:23 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-admin] PASSED [ 86%]
06:07:28 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-owner] PASSED [ 86%]
06:07:33 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-member] PASSED [ 86%]
06:07:38 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-admin] PASSED [ 86%]
06:07:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-owner] PASSED [ 86%]
06:07:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-member] PASSED [ 86%]
06:07:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-admin] PASSED [ 86%]
06:07:58 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-owner] PASSED [ 86%]
06:08:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-member] PASSED [ 86%]
06:08:08 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-admin] PASSED [ 86%]
06:08:13 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-owner] PASSED [ 86%]
06:08:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-member] PASSED [ 86%]
06:08:23 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-admin] PASSED [ 86%]
06:08:28 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-owner] PASSED [ 86%]
06:08:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-member] PASSED [ 86%]
06:08:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-admin] PASSED [ 86%]
06:08:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-owner] PASSED [ 86%]
06:08:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-member] PASSED [ 86%]
06:08:52 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-admin] PASSED [ 86%]
06:08:57 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-owner] PASSED [ 86%]
06:09:02 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-member] PASSED [ 87%]
06:09:07 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-admin] PASSED [ 87%]
06:09:12 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-owner] PASSED [ 87%]
06:09:17 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-member] PASSED [ 87%]
06:09:22 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-admin] PASSED [ 87%]
06:09:27 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-owner] PASSED [ 87%]
06:09:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-member] PASSED [ 87%]
06:09:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-admin] PASSED [ 87%]
06:09:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-owner] PASSED [ 87%]
06:09:46 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-member] PASSED [ 87%]
06:09:51 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-admin] PASSED [ 87%]
06:09:56 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-owner] PASSED [ 87%]
06:10:01 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-member] PASSED [ 87%]
06:10:06 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-admin] PASSED [ 87%]
06:10:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-owner] PASSED [ 87%]
06:10:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-member] PASSED [ 87%]
06:10:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-admin] PASSED [ 87%]
06:10:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-owner] PASSED [ 87%]
06:10:31 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-member] PASSED [ 87%]
06:10:36 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-admin] PASSED [ 87%]
06:10:41 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-owner] PASSED [ 88%]
06:10:46 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-member] PASSED [ 88%]
06:10:51 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-admin] PASSED [ 88%]
06:10:56 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-owner] PASSED [ 88%]
06:11:01 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-member] PASSED [ 88%]
06:11:06 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-admin] PASSED [ 88%]
06:11:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-owner] PASSED [ 88%]
06:11:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-member] PASSED [ 88%]
06:11:20 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-admin] PASSED [ 88%]
06:11:25 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-owner] PASSED [ 88%]
06:11:30 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-member] PASSED [ 88%]
06:11:35 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-admin] PASSED [ 88%]
06:11:40 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-owner] PASSED [ 88%]
06:11:45 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-member] PASSED [ 88%]
06:11:50 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-admin] PASSED [ 88%]
06:11:55 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-owner] PASSED [ 88%]
06:12:00 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-member] PASSED [ 88%]
06:12:00 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[PlateI] SKIPPED [ 88%]
06:12:00 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[WellI] SKIPPED [ 88%]
06:12:00 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[ImageI] SKIPPED [ 88%]
06:12:00 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[FileAnnotationI] SKIPPED [ 88%]
06:12:04 test/integration/test_pixelsService.py::TestPixelsService::test9655 PASSED [ 89%]
06:12:06 test/integration/test_rawfilestore.py::TestRFS::testNullSize11743 PASSED [ 89%]
06:12:06 test/integration/test_rawfilestore.py::TestRFS::testGetFileId PASSED [ 89%]
06:12:11 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithClose PASSED [ 89%]
06:12:14 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithSave PASSED [ 89%]
06:12:17 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithForEachTile PASSED [ 89%]
06:12:21 test/integration/test_rawpixelsstore.py::TestRPS::testBigPlane PASSED [ 89%]
06:12:33 test/integration/test_rawpixelsstore.py::TestRPS::testRomioToPyramid PASSED [ 89%]
06:12:46 test/integration/test_rawpixelsstore.py::TestRPS::test2RomioToPyramidWithNegOne PASSED [ 89%]
06:13:09 test/integration/test_rawpixelsstore.py::TestRPS::testPyramidConcurrentAccess PASSED [ 89%]
06:13:17 test/integration/test_rawpixelsstore.py::TestTiles::testTiles PASSED [ 89%]
06:13:35 test/integration/test_reimport.py::TestReimportArchivedFiles::testConvertSynthetic PASSED [ 89%]
06:13:38 test/integration/test_render.py::TestRendering::test_render_region PASSED [ 89%]
06:13:41 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir PASSED [ 89%]
06:13:41 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testCreate PASSED [ 89%]
06:13:41 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWrite PASSED [ 89%]
06:13:42 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWrite PASSED [ 89%]
06:13:42 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWriteRead PASSED [ 89%]
06:13:42 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testAppend PASSED [ 89%]
06:13:42 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testTruncateToZero PASSED [ 89%]
06:13:42 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testClose PASSED [ 90%]
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06:14:18 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadAnnotateGroup PASSED [ 90%]
06:14:21 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testMultiGroup PASSED [ 90%]
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06:14:34 test/integration/test_repository.py::TestPythonImporter::testReopenRawFileStoresPR2542 PASSED [ 90%]
06:14:37 test/integration/test_repository.py::TestPythonImporter::testImportsFrom2Groups PASSED [ 91%]
06:14:40 test/integration/test_repository.py::TestRawAccess::test_dir PASSED [ 91%]
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06:14:43 test/integration/test_repository.py::TestDbSync::testNonDbFileNotReturned PASSED [ 91%]
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06:14:46 test/integration/test_repository.py::TestRecursiveDelete::testCmdDeleteCantDeleteDirectories PASSED [ 91%]
06:14:47 test/integration/test_repository.py::TestRecursiveDelete::testRecursiveDeleteMethodAvailable PASSED [ 91%]
06:14:47 test/integration/test_repository.py::TestRecursiveDelete::testDoubleDot PASSED [ 91%]
06:14:49 test/integration/test_repository.py::TestDeleteLog::test_dir PASSED [ 91%]
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06:14:53 test/integration/test_repository.py::TestUserTemplate::testCreateUuidFails PASSED [ 91%]
06:14:53 test/integration/test_repository.py::TestUserTemplate::testCreateUserDirPasses PASSED [ 91%]
06:14:53 test/integration/test_repository.py::TestUserTemplate::testCreateUuidUnderUserDirPasses PASSED [ 91%]
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06:14:55 test/integration/test_repository.py::TestFilesetQueries::testDeleteQuery PASSED [ 92%]
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06:24:50 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testGetThumbnailSetAfterApplySettings PASSED [ 97%]
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06:27:39 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroup PASSED [ 99%]
06:27:42 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroupWhenConnectionLost PASSED [ 99%]
06:27:45 test/integration/test_tickets4000.py::TestTickets4000::test3201 PASSED [ 99%]
06:27:45 test/integration/test_tickets4000.py::TestTickets4000::test3131 PASSED [ 99%]
06:27:51 test/integration/test_util.py::TestUpgradeCheck::testReal FAILED [100%]
06:27:51 ==================================== ERRORS ====================================
06:27:51 ______________ ERROR at setup of TestConnectionMethods.testClose _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b2bcd00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022025f250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testClose>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f021b2fc1c0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b2bcd00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022025f250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:28:25,056 INFO [ omero.gateway] (MainThread) created connection (uuid=c0aef918-8bf0-4ace-bb07-9544faee9b16)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c0aef918-8bf0-4ace-bb07-9544faee9b16)
06:27:51 _________ ERROR at setup of TestConnectionMethods.testTopLevelObjects __________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236fa1070>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236fa1250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testTopLevelObjects>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f021b2fc1c0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236fa1070>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236fa1250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:30:34,380 INFO [ omero.gateway] (MainThread) created connection (uuid=e280688d-a79f-4cec-8213-9ef307f1e42b)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=e280688d-a79f-4cec-8213-9ef307f1e42b)
06:27:51 ____________ ERROR at setup of TestFindObject.testFindExperimenter _____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236e59c70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236e3dca0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testFindExperimenter>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0236f2e3a0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236e59c70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236e3dca0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:33:01,235 INFO [ omero.gateway] (MainThread) created connection (uuid=a2a3234b-09dd-4efe-b798-9452622ebc0d)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a2a3234b-09dd-4efe-b798-9452622ebc0d)
06:27:51 ______________ ERROR at setup of TestGetObject.testGetAnnotations ______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d1ced90>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d1cee50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetAnnotations>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d1ced90>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d1cee50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:35:38,675 INFO [ omero.gateway] (MainThread) created connection (uuid=eff95d22-c84a-4f41-8431-b38987a8b34f)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=eff95d22-c84a-4f41-8431-b38987a8b34f)
06:27:51 _________________ ERROR at setup of TestGetObject.testGetImage _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02075aeb20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02075ae580>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetImage>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02075aeb20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02075ae580>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:37:48,829 INFO [ omero.gateway] (MainThread) created connection (uuid=6da27b96-1072-4c32-bc59-d4402a26177c)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6da27b96-1072-4c32-bc59-d4402a26177c)
06:27:51 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-True] _______
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b4694f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d89d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-True]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b4694f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d89d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:39:59,338 INFO [ omero.gateway] (MainThread) created connection (uuid=0a3bbbb0-0bc9-41d1-9cc1-0c31bfaade24)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0a3bbbb0-0bc9-41d1-9cc1-0c31bfaade24)
06:27:51 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-False] ______
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d6468e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055165e0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-False]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d6468e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055165e0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:42:10,428 INFO [ omero.gateway] (MainThread) created connection (uuid=c7318f46-f96e-4467-a2d3-816abd46473c)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c7318f46-f96e-4467-a2d3-816abd46473c)
06:27:51 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-True] ______
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024aa67790>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02205ad730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-True]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024aa67790>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02205ad730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:44:21,478 INFO [ omero.gateway] (MainThread) created connection (uuid=747652cb-2ae8-4d07-82b2-2b55f1f20aa5)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=747652cb-2ae8-4d07-82b2-2b55f1f20aa5)
06:27:51 _____ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-False] ______
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0248755ee0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02079e48b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-False]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0248755ee0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02079e48b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:46:32,567 INFO [ omero.gateway] (MainThread) created connection (uuid=efc58809-5c94-4bc7-ab11-68e79b0cea9b)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=efc58809-5c94-4bc7-ab11-68e79b0cea9b)
06:27:51 ________________ ERROR at setup of TestGetObject.testTraversal _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207238250>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207238790>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg_tiny' for <Function testTraversal>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0196e8a9d0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg_tiny(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207238250>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207238790>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:48:43,664 INFO [ omero.gateway] (MainThread) created connection (uuid=8a9826e2-9af9-4308-af24-5a264c1e3e59)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=8a9826e2-9af9-4308-af24-5a264c1e3e59)
06:27:51 __________________ ERROR at setup of TestImage.testThumbnail ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021da76a60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021da76eb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testThumbnail>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021da76a60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021da76eb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:51:16,401 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:16,407 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:16,446 INFO [ omero.gateway] (MainThread) created connection (uuid=dd643949-0d17-4e49-87ff-b2c5619e6381)
06:27:51 2024-10-24 04:51:16,904 INFO [ omero.gateway] (MainThread) created connection (uuid=c9b28279-b618-4eb8-a6a4-b1ff778c9b91)
06:27:51 2024-10-24 04:51:16,940 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,007 INFO [ omero.gateway] (MainThread) created connection (uuid=9a70eb72-4065-4736-8f92-cd0ebd992d33)
06:27:51 2024-10-24 04:51:17,043 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,081 INFO [ omero.gateway] (MainThread) created connection (uuid=32f168b7-ed5a-4b55-9548-66752a25798c)
06:27:51 2024-10-24 04:51:17,125 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,164 INFO [ omero.gateway] (MainThread) created connection (uuid=8edab2fc-5554-4109-91b6-ec47155bae61)
06:27:51 2024-10-24 04:51:17,203 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,241 INFO [ omero.gateway] (MainThread) created connection (uuid=7e33b4ec-aec6-4f15-942e-fa61bf426720)
06:27:51 2024-10-24 04:51:17,278 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,316 INFO [ omero.gateway] (MainThread) created connection (uuid=bf3cf60a-4575-4d96-86b2-b6f3c616fd33)
06:27:51 2024-10-24 04:51:17,353 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,392 INFO [ omero.gateway] (MainThread) created connection (uuid=51e3b34c-2d8f-4396-a50e-72554b0a1238)
06:27:51 2024-10-24 04:51:17,439 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,476 INFO [ omero.gateway] (MainThread) created connection (uuid=d2a10ca0-557e-423d-aee4-2b99eb2fc012)
06:27:51 2024-10-24 04:51:17,525 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,562 INFO [ omero.gateway] (MainThread) created connection (uuid=69811a9e-7a7b-4907-a611-679bda706805)
06:27:51 2024-10-24 04:51:17,607 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,611 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:51:17,649 INFO [ omero.gateway] (MainThread) created connection (uuid=cb774f86-4871-4c30-99e0-7103123ed12d)
06:27:51 2024-10-24 04:51:17,717 INFO [ omero.gateway] (MainThread) created connection (uuid=6a45c096-94ca-44ce-8c91-6c11667b1ce8)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=dd643949-0d17-4e49-87ff-b2c5619e6381)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c9b28279-b618-4eb8-a6a4-b1ff778c9b91)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9a70eb72-4065-4736-8f92-cd0ebd992d33)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=32f168b7-ed5a-4b55-9548-66752a25798c)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=8edab2fc-5554-4109-91b6-ec47155bae61)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=7e33b4ec-aec6-4f15-942e-fa61bf426720)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=bf3cf60a-4575-4d96-86b2-b6f3c616fd33)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=51e3b34c-2d8f-4396-a50e-72554b0a1238)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d2a10ca0-557e-423d-aee4-2b99eb2fc012)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=69811a9e-7a7b-4907-a611-679bda706805)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=cb774f86-4871-4c30-99e0-7103123ed12d)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6a45c096-94ca-44ce-8c91-6c11667b1ce8)
06:27:51 _________________ ERROR at setup of TestImage.testThumbnailSet _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218e90940>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b3356a0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testThumbnailSet>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218e90940>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b3356a0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:53:26,738 INFO [ omero.gateway] (MainThread) created connection (uuid=c20a2195-ec3c-491f-9872-28a51cd1671e)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c20a2195-ec3c-491f-9872-28a51cd1671e)
06:27:51 _______________ ERROR at setup of TestImage.testRenderingModels ________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d243c10>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d243ca0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderingModels>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d243c10>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d243ca0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:55:37,314 INFO [ omero.gateway] (MainThread) created connection (uuid=9e967b96-ead3-40cd-ae7b-a67df863e1f0)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9e967b96-ead3-40cd-ae7b-a67df863e1f0)
06:27:51 _________________ ERROR at setup of TestImage.testSplitChannel _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f025209e910>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02951a0c10>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testSplitChannel>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f025209e910>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02951a0c10>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:57:48,398 INFO [ omero.gateway] (MainThread) created connection (uuid=f6c0d3e5-9409-45a2-970a-fadf74b044b5)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=f6c0d3e5-9409-45a2-970a-fadf74b044b5)
06:27:51 __________________ ERROR at setup of TestImage.testLinePlots ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b6d5ca0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d16bb20>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testLinePlots>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b6d5ca0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d16bb20>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 04:59:59,459 INFO [ omero.gateway] (MainThread) created connection (uuid=69b98b7b-d463-4623-a765-06548264689d)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=69b98b7b-d463-4623-a765-06548264689d)
06:27:51 _________________ ERROR at setup of TestImage.testProjections __________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02203eb0d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024fdcde80>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testProjections>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02203eb0d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024fdcde80>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:02:10,526 INFO [ omero.gateway] (MainThread) created connection (uuid=ae30536e-8aa3-4e6f-b112-4688057b39d3)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=ae30536e-8aa3-4e6f-b112-4688057b39d3)
06:27:51 __________________ ERROR at setup of TestImage.testProperties __________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0220286550>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0248178850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testProperties>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0220286550>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0248178850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:04:21,610 INFO [ omero.gateway] (MainThread) created connection (uuid=e91b1503-f5f8-48fe-a9ec-012de08bf428)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=e91b1503-f5f8-48fe-a9ec-012de08bf428)
06:27:51 ________________ ERROR at setup of TestImage.testPixelSizeUnits ________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236fa11c0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236fa1100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testPixelSizeUnits>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236fa11c0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236fa1100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:06:32,746 INFO [ omero.gateway] (MainThread) created connection (uuid=9cb7a4e0-bd49-4417-8c9c-e863ae0ec13c)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9cb7a4e0-bd49-4417-8c9c-e863ae0ec13c)
06:27:51 ________________ ERROR at setup of TestImage.testUnitsGetValue _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f022f50ae50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022f50aa90>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testUnitsGetValue>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f022f50ae50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022f50aa90>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:08:43,764 INFO [ omero.gateway] (MainThread) created connection (uuid=9dff15a5-62d3-4351-a3cc-5c8d289381bc)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9dff15a5-62d3-4351-a3cc-5c8d289381bc)
06:27:51 ____________ ERROR at setup of TestImage.testChannelWavelengthUnits ____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f022026a2b0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022026ab50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testChannelWavelengthUnits>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f022026a2b0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f022026ab50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:10:55,201 INFO [ omero.gateway] (MainThread) created connection (uuid=7832efeb-0aef-4af1-a528-c1884764e735)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=7832efeb-0aef-4af1-a528-c1884764e735)
06:27:51 ______________ ERROR at setup of TestImage.testExposureTimeUnits _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02061bb6d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d70340>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testExposureTimeUnits>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02061bb6d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d70340>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:13:05,880 INFO [ omero.gateway] (MainThread) created connection (uuid=542b4009-14e6-4455-9e7b-8a4f367c653c)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=542b4009-14e6-4455-9e7b-8a4f367c653c)
06:27:51 __________________ ERROR at setup of TestImage.testShortname ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d65ba60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d65b3d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testShortname>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d65ba60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d65b3d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:15:16,954 INFO [ omero.gateway] (MainThread) created connection (uuid=314967b9-33c8-4371-8cff-b55386d7fe57)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=314967b9-33c8-4371-8cff-b55386d7fe57)
06:27:51 __________________ ERROR at setup of TestImage.testImageDate ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0231e11340>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0231e11430>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testImageDate>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0231e11340>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0231e11430>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:17:28,032 INFO [ omero.gateway] (MainThread) created connection (uuid=4fee3276-8e7c-4975-83ef-a31cf62b0820)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=4fee3276-8e7c-4975-83ef-a31cf62b0820)
06:27:51 ________________ ERROR at setup of TestImage.testSimpleMarshal _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0205fd66a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0205fd6730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testSimpleMarshal>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0205fd66a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0205fd6730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:19:39,158 INFO [ omero.gateway] (MainThread) created connection (uuid=6afce519-9be3-4941-982e-56b631ec4172)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6afce519-9be3-4941-982e-56b631ec4172)
06:27:51 ____________________ ERROR at setup of TestImage.testExport ____________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02205b7d60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207ab7100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testExport>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02205b7d60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207ab7100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:21:50,171 INFO [ omero.gateway] (MainThread) created connection (uuid=3d2a8a72-46ab-4577-a84a-4c309f303821)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=3d2a8a72-46ab-4577-a84a-4c309f303821)
06:27:51 _______________ ERROR at setup of TestImage.testRenderJpegRegion _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02053407c0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0243714e50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02053407c0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0243714e50>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:24:01,262 INFO [ omero.gateway] (MainThread) created connection (uuid=c450da2c-0d55-42e0-ac16-bca27421fc42)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c450da2c-0d55-42e0-ac16-bca27421fc42)
06:27:51 _________ ERROR at setup of TestImage.testRenderJpegRegion_resolution __________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020711a700>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02071d70d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_resolution>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020711a700>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02071d70d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:26:12,317 INFO [ omero.gateway] (MainThread) created connection (uuid=9bf0b736-c53d-46df-8709-fc5d718dcf0b)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9bf0b736-c53d-46df-8709-fc5d718dcf0b)
06:27:51 _____ ERROR at setup of TestImage.testRenderJpegRegion_invalid_resolution ______
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b76dfa0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b76d250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_invalid_resolution>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b76dfa0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b76d250>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:28:23,736 INFO [ omero.gateway] (MainThread) created connection (uuid=047fa684-029e-43a1-a4bc-a1ef0f31b380)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=047fa684-029e-43a1-a4bc-a1ef0f31b380)
06:27:51 ______________ ERROR at setup of TestImage.testRenderBirdsEyeView ______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236d5cfd0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d5cf70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236d5cfd0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d5cf70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:30:34,475 INFO [ omero.gateway] (MainThread) created connection (uuid=3a9df39a-49de-46c6-badc-45ec9e9e141d)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=3a9df39a-49de-46c6-badc-45ec9e9e141d)
06:27:51 ___________ ERROR at setup of TestImage.testRenderBirdsEyeView_Size ____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071784f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207178c40>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView_Size>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f024d30ea60>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071784f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207178c40>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:32:45,553 INFO [ omero.gateway] (MainThread) created connection (uuid=062bee96-9422-425f-b27c-f0f5b3fb33ea)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=062bee96-9422-425f-b27c-f0f5b3fb33ea)
06:27:51 _____________ ERROR at setup of TestPixels.testReuseRawPixelsStore _____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b184fd0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b184f70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testReuseRawPixelsStore>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b184fd0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b184f70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:35:14,387 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:14,393 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:14,432 INFO [ omero.gateway] (MainThread) created connection (uuid=892f4a8c-9732-4477-957c-fc9c91897b90)
06:27:51 2024-10-24 05:35:14,909 INFO [ omero.gateway] (MainThread) created connection (uuid=138ea039-f2b4-43bd-b680-bd6454fe69c0)
06:27:51 2024-10-24 05:35:14,944 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:14,983 INFO [ omero.gateway] (MainThread) created connection (uuid=fbbef218-4b76-48ce-80bf-0fc5e7efedb1)
06:27:51 2024-10-24 05:35:15,019 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,059 INFO [ omero.gateway] (MainThread) created connection (uuid=3a3dc5a8-0d1a-430a-a9f2-fb8b39e2bbad)
06:27:51 2024-10-24 05:35:15,100 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,139 INFO [ omero.gateway] (MainThread) created connection (uuid=4fb34144-437c-49ac-925c-94bd31644285)
06:27:51 2024-10-24 05:35:15,182 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,222 INFO [ omero.gateway] (MainThread) created connection (uuid=56a5392d-79d9-404b-bfb3-042574b25d0e)
06:27:51 2024-10-24 05:35:15,262 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,300 INFO [ omero.gateway] (MainThread) created connection (uuid=61ac66ec-aa45-4bb6-ba62-a430a74a3d2c)
06:27:51 2024-10-24 05:35:15,339 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,377 INFO [ omero.gateway] (MainThread) created connection (uuid=a518dbb2-7086-4997-9412-8bd0509794e6)
06:27:51 2024-10-24 05:35:15,425 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,464 INFO [ omero.gateway] (MainThread) created connection (uuid=d72f543a-59d7-4d51-aaed-fe5929f76bc4)
06:27:51 2024-10-24 05:35:15,514 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,551 INFO [ omero.gateway] (MainThread) created connection (uuid=8f1cdd48-df33-441e-af92-8b519832e6fe)
06:27:51 2024-10-24 05:35:15,595 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,598 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:35:15,635 INFO [ omero.gateway] (MainThread) created connection (uuid=d1f04a2e-6b1c-4dc2-b85f-0d440ed47ba2)
06:27:51 2024-10-24 05:35:15,705 INFO [ omero.gateway] (MainThread) created connection (uuid=c956c467-7396-4be2-8e05-3a59148a1d71)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=892f4a8c-9732-4477-957c-fc9c91897b90)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=138ea039-f2b4-43bd-b680-bd6454fe69c0)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=fbbef218-4b76-48ce-80bf-0fc5e7efedb1)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=3a3dc5a8-0d1a-430a-a9f2-fb8b39e2bbad)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=4fb34144-437c-49ac-925c-94bd31644285)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=56a5392d-79d9-404b-bfb3-042574b25d0e)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=61ac66ec-aa45-4bb6-ba62-a430a74a3d2c)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a518dbb2-7086-4997-9412-8bd0509794e6)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d72f543a-59d7-4d51-aaed-fe5929f76bc4)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=8f1cdd48-df33-441e-af92-8b519832e6fe)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d1f04a2e-6b1c-4dc2-b85f-0d440ed47ba2)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c956c467-7396-4be2-8e05-3a59148a1d71)
06:27:51 __________________ ERROR at setup of TestPixels.testPlaneInfo __________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0206393310>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0206393940>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testPlaneInfo>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0206393310>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0206393940>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:37:24,669 INFO [ omero.gateway] (MainThread) created connection (uuid=006958ad-cf39-4037-9c8e-3b9cb911de0d)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=006958ad-cf39-4037-9c8e-3b9cb911de0d)
06:27:51 _________________ ERROR at setup of TestPixels.testPixelsType __________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b78f550>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d139eb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testPixelsType>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b78f550>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024d139eb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:39:35,196 INFO [ omero.gateway] (MainThread) created connection (uuid=4c5358c5-c12b-4096-9847-ca81352469d5)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=4c5358c5-c12b-4096-9847-ca81352469d5)
06:27:51 ___________________ ERROR at setup of TestPixels.testGetTile ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207213370>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207213040>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetTile>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207213370>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207213040>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:41:46,309 INFO [ omero.gateway] (MainThread) created connection (uuid=178db830-a5ce-4512-9822-4d6d599f3220)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=178db830-a5ce-4512-9822-4d6d599f3220)
06:27:51 __________________ ERROR at setup of TestPixels.testGetPlane ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071287f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207128190>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetPlane>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071287f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207128190>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:43:57,291 INFO [ omero.gateway] (MainThread) created connection (uuid=6f11b22e-dd46-4677-832d-1f9bed169276)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6f11b22e-dd46-4677-832d-1f9bed169276)
06:27:51 ________ ERROR at setup of TestPixels.testGetPlanesExceptionOnGetPlane _________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218a48b20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0218a48dc0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnGetPlane>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218a48b20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0218a48dc0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:46:08,382 INFO [ omero.gateway] (MainThread) created connection (uuid=903d25d0-5060-42f7-9302-b95e8a058ac3)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=903d25d0-5060-42f7-9302-b95e8a058ac3)
06:27:51 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnClose __________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236f23ee0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236f23a30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnClose>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236f23ee0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236f23a30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:48:19,418 INFO [ omero.gateway] (MainThread) created connection (uuid=0e3a6664-f946-4094-a287-4582f31e7c37)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0e3a6664-f946-4094-a287-4582f31e7c37)
06:27:51 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnBoth ___________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024fb4f190>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024fb4f9d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnBoth>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024fb4f190>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024fb4f9d0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:50:30,515 INFO [ omero.gateway] (MainThread) created connection (uuid=d440c3d6-b9a1-4a22-bcb7-20696560b622)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d440c3d6-b9a1-4a22-bcb7-20696560b622)
06:27:51 ________________ ERROR at setup of TestPixels.testGetHistogram _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0196eaec70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024aea4e20>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetHistogram>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0220174cd0>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0196eaec70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024aea4e20>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:52:42,162 INFO [ omero.gateway] (MainThread) created connection (uuid=0bb54872-4eab-4081-a7be-8fa31840bf56)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0bb54872-4eab-4081-a7be-8fa31840bf56)
06:27:51 ___________________ ERROR at setup of TestRDefs.testDefault ____________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207243e20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207243c70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testDefault>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207243e20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207243c70>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:54:56,373 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:56,381 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:56,426 INFO [ omero.gateway] (MainThread) created connection (uuid=2f5ce2c1-dcdb-4657-bfce-489bb3c6782e)
06:27:51 2024-10-24 05:54:56,980 INFO [ omero.gateway] (MainThread) created connection (uuid=e6ace603-d3d9-4f17-a039-a56b2872a4a4)
06:27:51 2024-10-24 05:54:57,025 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,070 INFO [ omero.gateway] (MainThread) created connection (uuid=ed3b09d2-c6be-4122-9f15-6febd5d12f1e)
06:27:51 2024-10-24 05:54:57,117 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,161 INFO [ omero.gateway] (MainThread) created connection (uuid=5cd37530-1f62-4e6f-9487-b61e5365ea58)
06:27:51 2024-10-24 05:54:57,210 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,263 INFO [ omero.gateway] (MainThread) created connection (uuid=5257d7bc-81ca-4099-ad90-79c0203f39dc)
06:27:51 2024-10-24 05:54:57,315 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,359 INFO [ omero.gateway] (MainThread) created connection (uuid=6e69565f-d48b-4f6f-82b2-a0abf1717e49)
06:27:51 2024-10-24 05:54:57,406 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,454 INFO [ omero.gateway] (MainThread) created connection (uuid=305133fa-cddc-400f-a0da-c8eacfe065b5)
06:27:51 2024-10-24 05:54:57,691 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,738 INFO [ omero.gateway] (MainThread) created connection (uuid=a9967354-2e4c-40eb-ab73-211b67299164)
06:27:51 2024-10-24 05:54:57,799 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,848 INFO [ omero.gateway] (MainThread) created connection (uuid=3454d4c5-f931-499c-ac78-65769e2d5099)
06:27:51 2024-10-24 05:54:57,914 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:57,962 INFO [ omero.gateway] (MainThread) created connection (uuid=958b2547-35dd-4c8d-b9e7-65682cb4110e)
06:27:51 2024-10-24 05:54:58,024 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:58,030 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 05:54:58,077 INFO [ omero.gateway] (MainThread) created connection (uuid=73e3309f-7f04-4a0a-b99f-e8edd09b8b83)
06:27:51 2024-10-24 05:54:58,167 INFO [ omero.gateway] (MainThread) created connection (uuid=0bf040a7-7eef-4e9f-9e6d-2b7a7b27bb74)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=2f5ce2c1-dcdb-4657-bfce-489bb3c6782e)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=e6ace603-d3d9-4f17-a039-a56b2872a4a4)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=ed3b09d2-c6be-4122-9f15-6febd5d12f1e)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=5cd37530-1f62-4e6f-9487-b61e5365ea58)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=5257d7bc-81ca-4099-ad90-79c0203f39dc)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6e69565f-d48b-4f6f-82b2-a0abf1717e49)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=305133fa-cddc-400f-a0da-c8eacfe065b5)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a9967354-2e4c-40eb-ab73-211b67299164)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=3454d4c5-f931-499c-ac78-65769e2d5099)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=958b2547-35dd-4c8d-b9e7-65682cb4110e)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=73e3309f-7f04-4a0a-b99f-e8edd09b8b83)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0bf040a7-7eef-4e9f-9e6d-2b7a7b27bb74)
06:27:51 __________________ ERROR at setup of TestRDefs.testCustomized __________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02063c2130>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02063c21f0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testCustomized>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02063c2130>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02063c21f0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:57:07,869 INFO [ omero.gateway] (MainThread) created connection (uuid=22168e23-32d2-4e55-acfb-28613a615536)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=22168e23-32d2-4e55-acfb-28613a615536)
06:27:51 ________________ ERROR at setup of TestRDefs.testChannelWindows ________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236de2310>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236de2730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testChannelWindows>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236de2310>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236de2730>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 05:59:18,889 INFO [ omero.gateway] (MainThread) created connection (uuid=1d5b59c9-fc57-47f5-882f-ce509d9a416a)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=1d5b59c9-fc57-47f5-882f-ce509d9a416a)
06:27:51 ______________ ERROR at setup of TestRDefs.testFloatDefaultMinMax ______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02480748e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0248074850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testFloatDefaultMinMax>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02480748e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0248074850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:01:29,975 INFO [ omero.gateway] (MainThread) created connection (uuid=43a801fa-e332-4bc4-b0fe-c11ef2b598f0)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=43a801fa-e332-4bc4-b0fe-c11ef2b598f0)
06:27:51 _________________ ERROR at setup of TestRDefs.testEmissionWave _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021da8fc70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021da8fc10>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testEmissionWave>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021da8fc70>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021da8fc10>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:03:41,021 INFO [ omero.gateway] (MainThread) created connection (uuid=2411a4d0-eb06-41e1-aab5-30afde6b8dad)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=2411a4d0-eb06-41e1-aab5-30afde6b8dad)
06:27:51 __________________ ERROR at setup of TestRDefs.testBatchCopy ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207178bb0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207178c40>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testBatchCopy>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207178bb0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207178c40>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:05:52,112 INFO [ omero.gateway] (MainThread) created connection (uuid=783c2510-48e7-4059-92c1-b1444a6dbe81)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=783c2510-48e7-4059-92c1-b1444a6dbe81)
06:27:51 ____________ ERROR at setup of TestRDefs.testGroupBasedPermissions _____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02063936a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02063930a0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGroupBasedPermissions>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02063936a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02063930a0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:08:03,169 INFO [ omero.gateway] (MainThread) created connection (uuid=01b678a4-cb77-4b51-a4ba-10b8dacd5d3a)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=01b678a4-cb77-4b51-a4ba-10b8dacd5d3a)
06:27:51 ___________________ ERROR at setup of TestRDefs.testGetRdefs ___________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02075be640>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02075bed60>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetRdefs>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02075be640>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02075bed60>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:10:14,668 INFO [ omero.gateway] (MainThread) created connection (uuid=6813e06a-0a31-4f8d-bd64-1a23d7605574)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=6813e06a-0a31-4f8d-bd64-1a23d7605574)
06:27:51 ________________ ERROR at setup of TestRDefs.testResetDefaults _________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218c69ca0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207abb940>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testResetDefaults>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0218c69ca0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207abb940>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:12:25,319 INFO [ omero.gateway] (MainThread) created connection (uuid=9c8910ae-fc5b-4dbe-b777-d9b877933445)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9c8910ae-fc5b-4dbe-b777-d9b877933445)
06:27:51 _____________ ERROR at setup of TestRDefs.testQuantizationSettings _____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207dc89d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207dc8130>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testQuantizationSettings>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207dc89d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207dc8130>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:14:36,400 INFO [ omero.gateway] (MainThread) created connection (uuid=115c1894-0c56-4a94-9887-c6e4acfc62ad)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=115c1894-0c56-4a94-9887-c6e4acfc62ad)
06:27:51 _________ ERROR at setup of TestRDefs.testQuantizationSettingsInvalid __________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207d162e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207d16d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsInvalid>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207d162e0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207d16d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:16:47,462 INFO [ omero.gateway] (MainThread) created connection (uuid=aa0cf633-9051-4f62-82e5-7df7efc44cc5)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=aa0cf633-9051-4f62-82e5-7df7efc44cc5)
06:27:51 ___________ ERROR at setup of TestRDefs.testQuantizationSettingsBulk ___________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b4d0d00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b4d0d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsBulk>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b4d0d00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b4d0d30>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:18:58,531 INFO [ omero.gateway] (MainThread) created connection (uuid=b4858ae8-b55c-4e1f-97e0-568c1be0e108)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=b4858ae8-b55c-4e1f-97e0-568c1be0e108)
06:27:51 _______________ ERROR at setup of TestRDefs.testGetChannelsNoRE ________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02520049d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02487c72e0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testGetChannelsNoRE>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02520049d0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02487c72e0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:21:09,600 INFO [ omero.gateway] (MainThread) created connection (uuid=4348c77a-4fdc-4c81-82c1-2e7cf63457f9)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=4348c77a-4fdc-4c81-82c1-2e7cf63457f9)
06:27:51 ____________ ERROR at setup of TestRDefs.testSetActiveChannelsNoRE _____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071d74f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02071d7220>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsNoRE>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02071d74f0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02071d7220>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:23:20,679 INFO [ omero.gateway] (MainThread) created connection (uuid=a9bee5fd-cd03-4298-a490-1635b671cf34)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a9bee5fd-cd03-4298-a490-1635b671cf34)
06:27:51 ___________ ERROR at setup of TestRDefs.testSetActiveChannelsWithRE ____________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b7aceb0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b7aca90>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsWithRE>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f021b7aceb0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f021b7aca90>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:25:31,745 INFO [ omero.gateway] (MainThread) created connection (uuid=d7720781-b929-4cd0-8deb-de566b071082)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d7720781-b929-4cd0-8deb-de566b071082)
06:27:51 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[True] ____
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207a01a30>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207a01e80>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[True]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207a01a30>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0207a01e80>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:27:43,248 INFO [ omero.gateway] (MainThread) created connection (uuid=9cc432b6-2123-4912-9456-65bfaf355b9d)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=9cc432b6-2123-4912-9456-65bfaf355b9d)
06:27:51 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[False] ___
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024aebdd60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024aebdeb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[False]>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024aebdd60>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f024aebdeb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:29:53,886 INFO [ omero.gateway] (MainThread) created connection (uuid=b293ad4e-f852-44a8-8451-ed1c1791ad92)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=b293ad4e-f852-44a8-8451-ed1c1791ad92)
06:27:51 ______________ ERROR at setup of TestRDefs.testUnregisterService _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020639a0a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f020639a5b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testUnregisterService>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020639a0a0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f020639a5b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:32:04,972 INFO [ omero.gateway] (MainThread) created connection (uuid=ea907fa1-4985-4605-a33a-45e35712b383)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=ea907fa1-4985-4605-a33a-45e35712b383)
06:27:51 _______________ ERROR at setup of TestRDefs.testRegisterService ________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020720ce50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d82100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testRegisterService>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f020720ce50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236d82100>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:34:16,049 INFO [ omero.gateway] (MainThread) created connection (uuid=ff799cf0-9bce-4553-83eb-7dc1520e1427)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=ff799cf0-9bce-4553-83eb-7dc1520e1427)
06:27:51 ___________________ ERROR at setup of TestRDefs.testCloseRE ____________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207d2aa00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0220767220>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testCloseRE>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0207243640>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0207d2aa00>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0220767220>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:36:27,100 INFO [ omero.gateway] (MainThread) created connection (uuid=1e34c257-dfce-44a6-8eb1-b4710dc3f7fc)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=1e34c257-dfce-44a6-8eb1-b4710dc3f7fc)
06:27:51 _____________ ERROR at setup of TestWrapper.testAllObjectsWrapped ______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02055fa5b0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055fa850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testAllObjectsWrapped>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f02206f7040>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02055fa5b0>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055fa850>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:42:37,188 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:37,193 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:37,236 INFO [ omero.gateway] (MainThread) created connection (uuid=e72c8115-5c87-4316-bf8c-35d724d9a77a)
06:27:51 2024-10-24 06:42:37,717 INFO [ omero.gateway] (MainThread) created connection (uuid=97632c00-f82f-46f7-ad65-82756e2953e0)
06:27:51 2024-10-24 06:42:37,753 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:37,790 INFO [ omero.gateway] (MainThread) created connection (uuid=7f716f6d-a52c-46cc-be74-21103ca1bc4d)
06:27:51 2024-10-24 06:42:37,825 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:37,864 INFO [ omero.gateway] (MainThread) created connection (uuid=622a2656-c27e-4295-a217-d74cf877910c)
06:27:51 2024-10-24 06:42:37,905 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:37,944 INFO [ omero.gateway] (MainThread) created connection (uuid=a80e5a19-b4db-43a4-a147-b8d3e0ebea65)
06:27:51 2024-10-24 06:42:37,987 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,027 INFO [ omero.gateway] (MainThread) created connection (uuid=0d4079bf-4b34-4fd8-9eb0-043a4591c7bc)
06:27:51 2024-10-24 06:42:38,069 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,107 INFO [ omero.gateway] (MainThread) created connection (uuid=5c9dae8f-fe67-4e45-a3ea-898d23781d76)
06:27:51 2024-10-24 06:42:38,148 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,188 INFO [ omero.gateway] (MainThread) created connection (uuid=a2090aec-190e-44de-babc-bc6a0cc4ec6e)
06:27:51 2024-10-24 06:42:38,240 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,284 INFO [ omero.gateway] (MainThread) created connection (uuid=d6b47a35-fd96-4eb6-a9f0-8c18f021d709)
06:27:51 2024-10-24 06:42:38,339 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,379 INFO [ omero.gateway] (MainThread) created connection (uuid=d5a05f63-00ac-4f95-b6e9-3b5e9f22b3ce)
06:27:51 2024-10-24 06:42:38,430 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,433 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:42:38,472 INFO [ omero.gateway] (MainThread) created connection (uuid=d83be2b2-eebe-4967-9f29-80a73dbff0d9)
06:27:51 2024-10-24 06:42:38,551 INFO [ omero.gateway] (MainThread) created connection (uuid=67345447-5634-4537-afe2-98af81859b4f)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=e72c8115-5c87-4316-bf8c-35d724d9a77a)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=97632c00-f82f-46f7-ad65-82756e2953e0)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=7f716f6d-a52c-46cc-be74-21103ca1bc4d)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=622a2656-c27e-4295-a217-d74cf877910c)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a80e5a19-b4db-43a4-a147-b8d3e0ebea65)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0d4079bf-4b34-4fd8-9eb0-043a4591c7bc)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=5c9dae8f-fe67-4e45-a3ea-898d23781d76)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=a2090aec-190e-44de-babc-bc6a0cc4ec6e)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d6b47a35-fd96-4eb6-a9f0-8c18f021d709)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d5a05f63-00ac-4f95-b6e9-3b5e9f22b3ce)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d83be2b2-eebe-4967-9f29-80a73dbff0d9)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=67345447-5634-4537-afe2-98af81859b4f)
06:27:51 _______________ ERROR at setup of TestWrapper.testDatasetWrapper _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02055d4b50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055d45b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testDatasetWrapper>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f02206f7040>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f02055d4b50>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f02055d45b0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:44:47,573 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:44:47,616 INFO [ omero.gateway] (MainThread) created connection (uuid=411e7536-cdb0-4765-b3b2-cad47a6d3cd0)
06:27:51 2024-10-24 06:44:47,696 INFO [ omero.gateway] (MainThread) created connection (uuid=bdc4ecbe-e5d6-449a-94b4-949540529338)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=411e7536-cdb0-4765-b3b2-cad47a6d3cd0)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=bdc4ecbe-e5d6-449a-94b4-949540529338)
06:27:51 _______________ ERROR at setup of TestWrapper.testDetailsWrapper _______________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d2be250>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0205602190>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 request = <SubRequest 'author_testimg' for <Function testDetailsWrapper>>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f02206f7040>
06:27:51 @pytest.fixture(scope='function')
06:27:51 def author_testimg(request, gatewaywrapper):
06:27:51 """
06:27:51 logs in as Author and returns the test image, creating it first if needed.
06:27:51 """
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f024d2be250>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0205602190>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ---------------------------- Captured stderr setup -----------------------------
06:27:51 2024-10-24 06:46:57,898 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:46:57,942 INFO [ omero.gateway] (MainThread) created connection (uuid=80fa94d8-352c-4dca-b550-74b642031e68)
06:27:51 2024-10-24 06:46:58,025 INFO [ omero.gateway] (MainThread) created connection (uuid=10629aa4-b040-41bf-9a0f-e2b670b1144e)
06:27:51 I<
06:27:51 ------------------------------ Captured log setup ------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=80fa94d8-352c-4dca-b550-74b642031e68)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=10629aa4-b040-41bf-9a0f-e2b670b1144e)
06:27:51 =================================== FAILURES ===================================
06:27:51 _________________________ TestAdmin.test_checkupgrade0 _________________________
06:27:51 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f0295992730>
06:27:51 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f02617acfd0>
06:27:51 def test_checkupgrade0(self, monkeypatch):
06:27:51 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:27:51 createUpgradeCheckClass("999999999.0.0"))
06:27:51 self.args.append("checkupgrade")
06:27:51 > self.go()
06:27:51 test/integration/clitest/test_admin.py:66:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 test/integration/clitest/test_admin.py:60: in go
06:27:51 self.cli.invoke(self.args, strict=True)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:27:51 self.assertRC()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <omero.cli.CLI object at 0x7f029aed3be0>
06:27:51 def assertRC(self):
06:27:51 if self.rv != 0:
06:27:51 > raise NonZeroReturnCode(self.rv, "assert failed")
06:27:51 E omero.cli.NonZeroReturnCode: assert failed
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:27:51 ----------------------------- Captured stdout call -----------------------------
06:27:51 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0261782070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 Error printing text
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0261782070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 _________________________ TestAdmin.test_checkupgrade1 _________________________
06:27:51 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f0295992a90>
06:27:51 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f0259ed1670>
06:27:51 def test_checkupgrade1(self, monkeypatch):
06:27:51 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:27:51 createUpgradeCheckClass("0.0.0"))
06:27:51 self.args.append("checkupgrade")
06:27:51 with pytest.raises(NonZeroReturnCode) as exc:
06:27:51 self.go()
06:27:51 > assert exc.value.rv == 1
06:27:51 E AssertionError: assert 2 == 1
06:27:51 E + where 2 = NonZeroReturnCode('assert failed').rv
06:27:51 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:27:51 test/integration/clitest/test_admin.py:74: AssertionError
06:27:51 ----------------------------- Captured stdout call -----------------------------
06:27:51 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0259e29130>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 Error printing text
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0259e29130>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 _________________ TestAdminRestrictedAdmin.test_checkupgrade0 __________________
06:27:51 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f029599e940>
06:27:51 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f026641eb20>
06:27:51 def test_checkupgrade0(self, monkeypatch):
06:27:51 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:27:51 createUpgradeCheckClass("999999999.0.0"))
06:27:51 self.args.append("checkupgrade")
06:27:51 > self.cli.invoke(self.args, strict=True)
06:27:51 test/integration/clitest/test_admin.py:134:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:27:51 self.assertRC()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <omero.cli.CLI object at 0x7f029552c730>
06:27:51 def assertRC(self):
06:27:51 if self.rv != 0:
06:27:51 > raise NonZeroReturnCode(self.rv, "assert failed")
06:27:51 E omero.cli.NonZeroReturnCode: assert failed
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:27:51 ----------------------------- Captured stdout call -----------------------------
06:27:51 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02663c4f70>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 Error printing text
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02663c4f70>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 _________________ TestAdminRestrictedAdmin.test_checkupgrade1 __________________
06:27:51 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f029599ed00>
06:27:51 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f02664171c0>
06:27:51 def test_checkupgrade1(self, monkeypatch):
06:27:51 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:27:51 createUpgradeCheckClass("0.0.0"))
06:27:51 self.args.append("checkupgrade")
06:27:51 with pytest.raises(NonZeroReturnCode) as exc:
06:27:51 self.cli.invoke(self.args, strict=True)
06:27:51 > assert exc.value.rv == 1
06:27:51 E AssertionError: assert 2 == 1
06:27:51 E + where 2 = NonZeroReturnCode('assert failed').rv
06:27:51 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:27:51 test/integration/clitest/test_admin.py:142: AssertionError
06:27:51 ----------------------------- Captured stdout call -----------------------------
06:27:51 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02663ddd30>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 Error printing text
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02663ddd30>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 _____________ TestGetObject.testGetObjectsByMapAnnotations[Image] ______________
06:27:51 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f029524e370>
06:27:51 datatype = 'Image'
06:27:51 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:27:51 'Screen', 'Plate'])
06:27:51 def testGetObjectsByMapAnnotations(self, datatype):
06:27:51 > client, exp = self.new_client_and_user()
06:27:51 test/integration/gatewaytest/test_get_objects.py:767:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:27:51 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:27:51 admin_service = cls.root.getSession().getAdminService()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = session-a7a64e87-1558-47a8-b2c2-820dfc5775a0/6c99c8c6-60ac-4368-bc0a-6d4a4ada2232 -t -e 1.1 @ BlitzAdapters
06:27:51 _ctx = None
06:27:51 def getAdminService(self, _ctx=None):
06:27:51 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:27:51 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 E recv() returned zero
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:27:51 ____________ TestGetObject.testGetObjectsByMapAnnotations[Dataset] _____________
06:27:51 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f02951235b0>
06:27:51 datatype = 'Dataset'
06:27:51 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:27:51 'Screen', 'Plate'])
06:27:51 def testGetObjectsByMapAnnotations(self, datatype):
06:27:51 > client, exp = self.new_client_and_user()
06:27:51 test/integration/gatewaytest/test_get_objects.py:767:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:27:51 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:27:51 admin_service = cls.root.getSession().getAdminService()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = session-a7a64e87-1558-47a8-b2c2-820dfc5775a0/6c99c8c6-60ac-4368-bc0a-6d4a4ada2232 -t -e 1.1 @ BlitzAdapters
06:27:51 _ctx = None
06:27:51 def getAdminService(self, _ctx=None):
06:27:51 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:27:51 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 E recv() returned zero
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:27:51 ____________ TestGetObject.testGetObjectsByMapAnnotations[Project] _____________
06:27:51 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0294b2f610>
06:27:51 datatype = 'Project'
06:27:51 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:27:51 'Screen', 'Plate'])
06:27:51 def testGetObjectsByMapAnnotations(self, datatype):
06:27:51 > client, exp = self.new_client_and_user()
06:27:51 test/integration/gatewaytest/test_get_objects.py:767:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:27:51 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:27:51 admin_service = cls.root.getSession().getAdminService()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = session-a7a64e87-1558-47a8-b2c2-820dfc5775a0/6c99c8c6-60ac-4368-bc0a-6d4a4ada2232 -t -e 1.1 @ BlitzAdapters
06:27:51 _ctx = None
06:27:51 def getAdminService(self, _ctx=None):
06:27:51 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:27:51 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 E recv() returned zero
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:27:51 _____________ TestGetObject.testGetObjectsByMapAnnotations[Screen] _____________
06:27:51 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0294b2f850>
06:27:51 datatype = 'Screen'
06:27:51 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:27:51 'Screen', 'Plate'])
06:27:51 def testGetObjectsByMapAnnotations(self, datatype):
06:27:51 > client, exp = self.new_client_and_user()
06:27:51 test/integration/gatewaytest/test_get_objects.py:767:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:27:51 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:27:51 admin_service = cls.root.getSession().getAdminService()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = session-a7a64e87-1558-47a8-b2c2-820dfc5775a0/6c99c8c6-60ac-4368-bc0a-6d4a4ada2232 -t -e 1.1 @ BlitzAdapters
06:27:51 _ctx = None
06:27:51 def getAdminService(self, _ctx=None):
06:27:51 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:27:51 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 E recv() returned zero
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:27:51 _____________ TestGetObject.testGetObjectsByMapAnnotations[Plate] ______________
06:27:51 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0294b2f9d0>
06:27:51 datatype = 'Plate'
06:27:51 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:27:51 'Screen', 'Plate'])
06:27:51 def testGetObjectsByMapAnnotations(self, datatype):
06:27:51 > client, exp = self.new_client_and_user()
06:27:51 test/integration/gatewaytest/test_get_objects.py:767:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:27:51 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:27:51 admin_service = cls.root.getSession().getAdminService()
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = session-a7a64e87-1558-47a8-b2c2-820dfc5775a0/6c99c8c6-60ac-4368-bc0a-6d4a4ada2232 -t -e 1.1 @ BlitzAdapters
06:27:51 _ctx = None
06:27:51 def getAdminService(self, _ctx=None):
06:27:51 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:27:51 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 E recv() returned zero
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:27:51 --------------------------- Captured stderr teardown ---------------------------
06:27:51 2024-10-24 04:50:57,745 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 *2024-10-24 04:50:57,791 INFO [ omero.gateway] (MainThread) created connection (uuid=82a534de-59a2-4157-985f-2e8e5832cc19)
06:27:51 *2024-10-24 04:50:57,950 INFO [ omero.gateway] (MainThread) created connection (uuid=56cf2dfc-82bb-4d97-ab5f-87171446617e)
06:27:51 *2024-10-24 04:50:58,080 INFO [ omero.gateway] (MainThread) created connection (uuid=32feaf89-b941-4243-8459-e5e13179b62d)
06:27:51 *2024-10-24 04:50:58,161 INFO [ omero.gateway] (MainThread) created connection (uuid=b09ce4aa-4eee-481e-ae85-d9247e6f451a)
06:27:51 *2024-10-24 04:50:58,248 INFO [ omero.gateway] (MainThread) created connection (uuid=d7752107-4369-4722-8ac3-932918687fa5)
06:27:51 *2024-10-24 04:50:58,335 INFO [ omero.gateway] (MainThread) created connection (uuid=1a6fb1a2-a92f-474c-916e-cc524adbfc32)
06:27:51 2024-10-24 04:50:58,378 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:50:58,384 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:50:58,422 INFO [ omero.gateway] (MainThread) created connection (uuid=0b0f5472-390e-4634-b0ed-c6e21dbb70af)
06:27:51 2024-10-24 04:50:58,672 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 04:50:58,676 WARNI [ omero.client] (MainThread) Cannot get session service for killSession. Using closeSession
06:27:51 ---------------------------- Captured log teardown -----------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=82a534de-59a2-4157-985f-2e8e5832cc19)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=56cf2dfc-82bb-4d97-ab5f-87171446617e)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=32feaf89-b941-4243-8459-e5e13179b62d)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=b09ce4aa-4eee-481e-ae85-d9247e6f451a)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=d7752107-4369-4722-8ac3-932918687fa5)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=1a6fb1a2-a92f-474c-916e-cc524adbfc32)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=0b0f5472-390e-4634-b0ed-c6e21dbb70af)
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 WARNING omero.client:clients.py:1095 Cannot get session service for killSession. Using closeSession
06:27:51 _____________________________ TestUser.testSaveAs ______________________________
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236b3be20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236b3beb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 > h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 /usr/lib64/python3.9/urllib/request.py:1346:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 /usr/lib64/python3.9/http/client.py:1285: in request
06:27:51 self._send_request(method, url, body, headers, encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:27:51 self.endheaders(body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:27:51 self._send_output(message_body, encode_chunked=encode_chunked)
06:27:51 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:27:51 self.send(msg)
06:27:51 /usr/lib64/python3.9/http/client.py:980: in send
06:27:51 self.connect()
06:27:51 /usr/lib64/python3.9/http/client.py:1447: in connect
06:27:51 super().connect()
06:27:51 /usr/lib64/python3.9/http/client.py:946: in connect
06:27:51 self.sock = self._create_connection(
06:27:51 /usr/lib64/python3.9/socket.py:844: in create_connection
06:27:51 raise err
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 address = ('downloads.openmicroscopy.org', 443)
06:27:51 timeout = <object object at 0x7f029a050b40>, source_address = None
06:27:51 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:27:51 source_address=None):
06:27:51 """Connect to *address* and return the socket object.
06:27:51 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:27:51 port)``) and return the socket object. Passing the optional
06:27:51 *timeout* parameter will set the timeout on the socket instance
06:27:51 before attempting to connect. If no *timeout* is supplied, the
06:27:51 global default timeout setting returned by :func:`getdefaulttimeout`
06:27:51 is used. If *source_address* is set it must be a tuple of (host, port)
06:27:51 for the socket to bind as a source address before making the connection.
06:27:51 A host of '' or port 0 tells the OS to use the default.
06:27:51 """
06:27:51 host, port = address
06:27:51 err = None
06:27:51 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:27:51 af, socktype, proto, canonname, sa = res
06:27:51 sock = None
06:27:51 try:
06:27:51 sock = socket(af, socktype, proto)
06:27:51 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:27:51 sock.settimeout(timeout)
06:27:51 if source_address:
06:27:51 sock.bind(source_address)
06:27:51 > sock.connect(sa)
06:27:51 E TimeoutError: [Errno 110] Connection timed out
06:27:51 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:27:51 During handling of the above exception, another exception occurred:
06:27:51 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f0294c66b80>
06:27:51 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f022c8cf130>
06:27:51 def testSaveAs(self, gatewaywrapper):
06:27:51 for u in (gatewaywrapper.AUTHOR, gatewaywrapper.ADMIN):
06:27:51 # Test image should be owned by author
06:27:51 gatewaywrapper.loginAsAuthor()
06:27:51 > image = gatewaywrapper.getTestImage(autocreate=True)
06:27:51 test/integration/gatewaytest/test_user.py:34:
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:27:51 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:27:51 i = IMAGES[alias].create()
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:27:51 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:27:51 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:27:51 return opener.open(url, data, timeout)
06:27:51 /usr/lib64/python3.9/urllib/request.py:517: in open
06:27:51 response = self._open(req, data)
06:27:51 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:27:51 result = self._call_chain(self.handle_open, protocol, protocol +
06:27:51 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:27:51 result = func(*args)
06:27:51 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:27:51 return self.do_open(http.client.HTTPSConnection, req,
06:27:51 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:27:51 self = <urllib.request.HTTPSHandler object at 0x7f022025f6d0>
06:27:51 http_class = <class 'http.client.HTTPSConnection'>
06:27:51 req = <urllib.request.Request object at 0x7f0236b3be20>
06:27:51 http_conn_args = {'check_hostname': None, 'context': None}
06:27:51 host = 'downloads.openmicroscopy.org'
06:27:51 h = <http.client.HTTPSConnection object at 0x7f0236b3beb0>
06:27:51 def do_open(self, http_class, req, **http_conn_args):
06:27:51 """Return an HTTPResponse object for the request, using http_class.
06:27:51 http_class must implement the HTTPConnection API from http.client.
06:27:51 """
06:27:51 host = req.host
06:27:51 if not host:
06:27:51 raise URLError('no host given')
06:27:51 # will parse host:port
06:27:51 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:27:51 h.set_debuglevel(self._debuglevel)
06:27:51 headers = dict(req.unredirected_hdrs)
06:27:51 headers.update({k: v for k, v in req.headers.items()
06:27:51 if k not in headers})
06:27:51 # TODO(jhylton): Should this be redesigned to handle
06:27:51 # persistent connections?
06:27:51 # We want to make an HTTP/1.1 request, but the addinfourl
06:27:51 # class isn't prepared to deal with a persistent connection.
06:27:51 # It will try to read all remaining data from the socket,
06:27:51 # which will block while the server waits for the next request.
06:27:51 # So make sure the connection gets closed after the (only)
06:27:51 # request.
06:27:51 headers["Connection"] = "close"
06:27:51 headers = {name.title(): val for name, val in headers.items()}
06:27:51 if req._tunnel_host:
06:27:51 tunnel_headers = {}
06:27:51 proxy_auth_hdr = "Proxy-Authorization"
06:27:51 if proxy_auth_hdr in headers:
06:27:51 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:27:51 # Proxy-Authorization should not be sent to origin
06:27:51 # server.
06:27:51 del headers[proxy_auth_hdr]
06:27:51 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:27:51 try:
06:27:51 try:
06:27:51 h.request(req.get_method(), req.selector, req.data, headers,
06:27:51 encode_chunked=req.has_header('Transfer-encoding'))
06:27:51 except OSError as err: # timeout error
06:27:51 > raise URLError(err)
06:27:51 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 2024-10-24 06:40:14,382 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:27:51 2024-10-24 06:40:14,420 INFO [ omero.gateway] (MainThread) created connection (uuid=c60e5076-573b-4fe0-817b-67779e52e9c1)
06:27:51 2024-10-24 06:40:14,499 INFO [ omero.gateway] (MainThread) created connection (uuid=c9dedd32-4fa4-459d-8f8b-0082b7d0fd38)
06:27:51 I<
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c60e5076-573b-4fe0-817b-67779e52e9c1)
06:27:51 INFO omero.gateway:__init__.py:2243 created connection (uuid=c9dedd32-4fa4-459d-8f8b-0082b7d0fd38)
06:27:51 __________________________ TestUpgradeCheck.testReal ___________________________
06:27:51 self = <test.integration.test_util.TestUpgradeCheck object at 0x7f028e33e7f0>
06:27:51 def testReal(self):
06:27:51 uc = UpgradeCheck("test", version="test")
06:27:51 uc.run()
06:27:51 > assert uc.isUpgradeNeeded() is True
06:27:51 E assert False is True
06:27:51 E + where False = isUpgradeNeeded()
06:27:51 E + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f009c751d60>.isUpgradeNeeded
06:27:51 test/integration/test_util.py:35: AssertionError
06:27:51 ----------------------------- Captured stderr call -----------------------------
06:27:51 2024-10-24 07:27:51,555 ERROR [ omero.util.UpgradeCheck] (MainThread) HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f009c751460>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 ------------------------------ Captured log call -------------------------------
06:27:51 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f009c751460>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:27:51 =============================== warnings summary ===============================
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:27:51 import sys, string, imp, os, threading, warnings, datetime
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:27:51 warnings.warn(
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:27:51 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:27:51 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:27:51 from pkg_resources import DistributionNotFound, get_distribution
06:27:51 OmeroPy/test/integration/clitest/test_admin.py: 2 warnings
06:27:51 OmeroPy/test/integration/clitest/test_chgrp.py: 116 warnings
06:27:51 OmeroPy/test/integration/clitest/test_chown.py: 76 warnings
06:27:51 OmeroPy/test/integration/clitest/test_cleanse.py: 7 warnings
06:27:51 OmeroPy/test/integration/clitest/test_delete.py: 81 warnings
06:27:51 OmeroPy/test/integration/clitest/test_download.py: 91 warnings
06:27:51 OmeroPy/test/integration/clitest/test_duplicate.py: 18 warnings
06:27:51 OmeroPy/test/integration/clitest/test_fs.py: 26 warnings
06:27:51 OmeroPy/test/integration/clitest/test_group.py: 154 warnings
06:27:51 OmeroPy/test/integration/clitest/test_import.py: 189 warnings
06:27:51 OmeroPy/test/integration/clitest/test_import_bulk.py: 1 warning
06:27:51 OmeroPy/test/integration/clitest/test_ldap.py: 5 warnings
06:27:51 OmeroPy/test/integration/clitest/test_metadata.py: 10 warnings
06:27:51 OmeroPy/test/integration/clitest/test_obj.py: 56 warnings
06:27:51 OmeroPy/test/integration/clitest/test_pyramids.py: 10 warnings
06:27:51 OmeroPy/test/integration/clitest/test_script.py: 10 warnings
06:27:51 OmeroPy/test/integration/clitest/test_search.py: 16 warnings
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py: 121 warnings
06:27:51 OmeroPy/test/integration/clitest/test_tag.py: 57 warnings
06:27:51 OmeroPy/test/integration/clitest/test_upload.py: 6 warnings
06:27:51 OmeroPy/test/integration/clitest/test_user.py: 183 warnings
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1]
06:27:51 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2]
06:27:51 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/cli.py:2105: DeprecationWarning:
06:27:51 Using '--dry-run'. Future versions will switch to '--force'. Explicitly set the parameter for portability
06:27:51 warnings.warn("\nUsing '--dry-run'.\
06:27:51 OmeroPy/test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py:131: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testBulk1') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_PixelsI.py:37: DeprecationWarning: Pixels.relatedTo is deprecated
06:27:51 warnings.warn(item + " is deprecated", DeprecationWarning)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLogin_None_True_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLogin_None_False_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLogin_300_True_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLogin_300_False_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginAs_rw_____0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginAs_rwr____0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginAs_rwra___0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginAs_rwrw___0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginMultiGroup_True_True_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginMultiGroup_True_False0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginMultiGroup_False_True0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testLoginMultiGroup_False_Fals0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testGroup
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testGroup0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testTimeout
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testTimeout0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testFile
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testFile0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testKey
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testKey0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[user]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testWho_user_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[root]
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/testWho_root_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/test_open0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/test_open_with_id0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/test_open_restricted_admin_no_0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/test_open_restricted_admin_sud0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_close
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-18/test_close0') (type: LocalPath); converted to str implicitly
06:27:51 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:27:51 OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir returned '9ac4e97b-3b23-4d9c-b3fb-68e3456e0717_3717/631d7c9a-1b75-42ec-a1f1-ac65290924e0', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/gatewaytest/test_annotation.py: 4 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_chmod.py: 28 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_connection.py: 10 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 3 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_image_wrapper.py: 3 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_user.py: 1 warning
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:27:51 logger.warn("%s on %s to <%s> %s(%r, %r)",
06:27:51 OmeroPy/test/integration/gatewaytest/test_annotation.py: 13 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_chgrp.py: 4 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_chmod.py: 3 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 25 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py: 5 warnings
06:27:51 OmeroPy/test/integration/gatewaytest/test_services.py: 2 warnings
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3824: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:27:51 convertedPlane = byteSwappedPlane.tostring()
06:27:51 OmeroPy/test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4381: DeprecationWarning: Deprecated. Use deleteObject() or deleteObjects()
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:27:51 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:27:51 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:27:51 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:10236: DeprecationWarning: Deprecated. Use getImportedImageFiles()
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:27:51 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3048: DeprecationWarning: Deprecated. Use ExperimenterGroupWrapper.groupSummary()
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/gatewaytest/test_ticket10618.py: 24 warnings
06:27:51 OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py: 1 warning
06:27:51 OmeroPy/test/integration/scriptstest/test_script_utils.py: 150 warnings
06:27:51 OmeroPy/test/integration/test_exporter.py: 1 warning
06:27:51 OmeroPy/test/integration/test_ishare.py: 3 warnings
06:27:51 OmeroPy/test/integration/test_librarytest.py: 31 warnings
06:27:51 OmeroPy/test/integration/test_permissions.py: 2 warnings
06:27:51 OmeroPy/test/integration/test_render.py: 1 warning
06:27:51 OmeroPy/test/integration/test_rois.py: 2 warnings
06:27:51 OmeroPy/test/integration/test_scripts.py: 1 warning
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py: 55 warnings
06:27:51 OmeroPy/test/integration/test_tickets1000.py: 1 warning
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:27:51 converted_plane = byte_swapped_plane.tostring()
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:905: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:27:51 log.warn("PlateColumn is unimplemented")
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:955: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:27:51 log.warn(
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:27:51 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:1389: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:27:51 log.warn("Invalid Id:%d found in row %s", row[n], row)
06:27:51 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:27:51 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:27:51 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:27:51 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:27:51 <string>:77: DeprecationWarning: This plugin is deprecated as of OMERO 5.5.0. Use the upload CLI plugin available from https://pypi.org/project/omero-upload/ instead.
06:27:51 OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript returned 4958, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f029a629a60>
06:27:51 Traceback (most recent call last):
06:27:51 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:27:51 self.close()
06:27:51 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:27:51 unlink(self.name)
06:27:51 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp5b940e8l.tiff'
06:27:51 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:27:51 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f029a629a60>
06:27:51 Traceback (most recent call last):
06:27:51 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:27:51 self.close()
06:27:51 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:27:51 unlink(self.name)
06:27:51 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp15yacxcm.foo'
06:27:51 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:27:51 OmeroPy/test/integration/scriptstest/test_script_utils.py: 200 warnings
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1131: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:27:51 converted_row = row.tostring()
06:27:51 OmeroPy/test/integration/tablestest/test_backwards_compatibility.py: 12 warnings
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py:84: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:27:51 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable returned object #0 (::omero::model::OriginalFile)
06:27:51 {
06:27:51 _id = object #1 (::omero::RLong)
06:27:51 {
06:27:51 _val = 5014
06:27:51 }
06:27:51 _details = object #2 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = object #3 (::omero::model::Experimenter)
06:27:51 {
06:27:51 _id = object #4 (::omero::RLong)
06:27:51 {
06:27:51 _val = 3847
06:27:51 }
06:27:51 _details = object #5 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #6 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = True
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #7 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #8 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = object #9 (::omero::RInt)
06:27:51 {
06:27:51 _val = 0
06:27:51 }
06:27:51 _groupExperimenterMapSeq =
06:27:51 {
06:27:51 }
06:27:51 _groupExperimenterMapLoaded = False
06:27:51 _omeName = object #10 (::omero::RString)
06:27:51 {
06:27:51 _val = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 }
06:27:51 _firstName = object #11 (::omero::RString)
06:27:51 {
06:27:51 _val = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 }
06:27:51 _middleName = <nil>
06:27:51 _lastName = object #12 (::omero::RString)
06:27:51 {
06:27:51 _val = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 }
06:27:51 _institution = <nil>
06:27:51 _ldap = object #13 (::omero::RBool)
06:27:51 {
06:27:51 _val = False
06:27:51 }
06:27:51 _email = object #14 (::omero::RString)
06:27:51 {
06:27:51 _val =
06:27:51 }
06:27:51 _config =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 }
06:27:51 _group = object #15 (::omero::model::ExperimenterGroup)
06:27:51 {
06:27:51 _id = object #16 (::omero::RLong)
06:27:51 {
06:27:51 _val = 2824
06:27:51 }
06:27:51 _details = object #17 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #18 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = True
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #19 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #20 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = <object #9>
06:27:51 _name = object #21 (::omero::RString)
06:27:51 {
06:27:51 _val = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 }
06:27:51 _ldap = <object #13>
06:27:51 _groupExperimenterMapSeq =
06:27:51 {
06:27:51 }
06:27:51 _groupExperimenterMapLoaded = False
06:27:51 _config =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _description = <nil>
06:27:51 }
06:27:51 _creationEvent = object #22 (::omero::model::Event)
06:27:51 {
06:27:51 _id = object #23 (::omero::RLong)
06:27:51 {
06:27:51 _val = 80630
06:27:51 }
06:27:51 _details = object #24 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #25 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = True
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #26 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #27 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _status = <nil>
06:27:51 _time = object #28 (::omero::RTime)
06:27:51 {
06:27:51 _val = 1729749305596
06:27:51 }
06:27:51 _experimenter = <object #3>
06:27:51 _experimenterGroup = <object #15>
06:27:51 _type = object #29 (::omero::model::EventType)
06:27:51 {
06:27:51 _id = object #30 (::omero::RLong)
06:27:51 {
06:27:51 _val = 4
06:27:51 }
06:27:51 _details = object #31 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #32 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = False
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #33 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #34 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _value = object #35 (::omero::RString)
06:27:51 {
06:27:51 _val = User
06:27:51 }
06:27:51 }
06:27:51 _containingEvent = <nil>
06:27:51 _logsSeq =
06:27:51 {
06:27:51 }
06:27:51 _logsLoaded = True
06:27:51 _session = object #36 (::omero::model::Session)
06:27:51 {
06:27:51 _id = object #37 (::omero::RLong)
06:27:51 {
06:27:51 _val = 8772
06:27:51 }
06:27:51 _details = object #38 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #39 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = False
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #40 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #41 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = <object #9>
06:27:51 _node = object #42 (::omero::model::Node)
06:27:51 {
06:27:51 _id = object #43 (::omero::RLong)
06:27:51 {
06:27:51 _val = 1
06:27:51 }
06:27:51 _details = <nil>
06:27:51 _loaded = False
06:27:51 _version = <nil>
06:27:51 _sessionsSeq =
06:27:51 {
06:27:51 }
06:27:51 _sessionsLoaded = False
06:27:51 _uuid = <nil>
06:27:51 _conn = <nil>
06:27:51 _up = <nil>
06:27:51 _down = <nil>
06:27:51 _scale = <nil>
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 }
06:27:51 _uuid = object #44 (::omero::RString)
06:27:51 {
06:27:51 _val = ********
06:27:51 }
06:27:51 _owner = <object #3>
06:27:51 _sudoer = <nil>
06:27:51 _timeToIdle = object #45 (::omero::RLong)
06:27:51 {
06:27:51 _val = 600000
06:27:51 }
06:27:51 _timeToLive = object #46 (::omero::RLong)
06:27:51 {
06:27:51 _val = 0
06:27:51 }
06:27:51 _started = object #47 (::omero::RTime)
06:27:51 {
06:27:51 _val = 1729749305546
06:27:51 }
06:27:51 _closed = <nil>
06:27:51 _message = object #48 (::omero::RString)
06:27:51 {
06:27:51 _val = Initial message.
06:27:51 }
06:27:51 _defaultEventType = object #49 (::omero::RString)
06:27:51 {
06:27:51 _val = User
06:27:51 }
06:27:51 _userAgent = object #50 (::omero::RString)
06:27:51 {
06:27:51 _val = OMERO.py.test
06:27:51 }
06:27:51 _userIP = <nil>
06:27:51 _eventsSeq =
06:27:51 {
06:27:51 }
06:27:51 _eventsLoaded = False
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = True
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _updateEvent = <object #22>
06:27:51 _permissions = object #51 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = False
06:27:51 [2] = False
06:27:51 [3] = False
06:27:51 [4] = False
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 3cc57eaa-dc1d-4608-a74e-47ea4e5aae8f
06:27:51 key = omero.session.uuid
06:27:51 value = 294224bd-db09-411a-93f2-3c3793f23815
06:27:51 }
06:27:51 _event = object #52 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 8772
06:27:51 sessionUuid = *********
06:27:51 userId = 3847
06:27:51 userName = ab798f25-d3b0-4156-886e-fdbee11b3dc2
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 2824
06:27:51 groupName = aaea2363-bca0-4bd0-8f0d-8ec943340202
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = 80630
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 2824
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #53 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = <nil>
06:27:51 _pixelsFileMapsSeq =
06:27:51 {
06:27:51 }
06:27:51 _pixelsFileMapsLoaded = True
06:27:51 _pixelsFileMapsCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _path = object #54 (::omero::RString)
06:27:51 {
06:27:51 _val = /test
06:27:51 }
06:27:51 _repo = <nil>
06:27:51 _size = <nil>
06:27:51 _atime = object #55 (::omero::RTime)
06:27:51 {
06:27:51 _val = 1729749305595
06:27:51 }
06:27:51 _mtime = object #56 (::omero::RTime)
06:27:51 {
06:27:51 _val = 1729749305595
06:27:51 }
06:27:51 _ctime = object #57 (::omero::RTime)
06:27:51 {
06:27:51 _val = 1729749305595
06:27:51 }
06:27:51 _hasher = <nil>
06:27:51 _hash = <nil>
06:27:51 _mimetype = object #58 (::omero::RString)
06:27:51 {
06:27:51 _val = OMERO.tables
06:27:51 }
06:27:51 _filesetEntriesSeq =
06:27:51 {
06:27:51 }
06:27:51 _filesetEntriesLoaded = True
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = True
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _name = object #59 (::omero::RString)
06:27:51 {
06:27:51 _val = /test
06:27:51 }
06:27:51 }, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:27:51 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_service.py:54: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:27:51 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:27:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_tables.py:55: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:27:51 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:27:51 OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper returned '187195e0-35cc-42f6-a6e7-dfc6a92eea78', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_isession.py::TestISession::testSessionWithIP[127.0.0.1]
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_SessionI.py:37: DeprecationWarning: Session.userIP is deprecated
06:27:51 warnings.warn(item + " is deprecated", DeprecationWarning)
06:27:51 OmeroPy/test/integration/test_ishare.py::TestIShare::test1201
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test1201 returned (<omero.clients.BaseClient object at 0x7f0205bd65e0>, 8987, 1729749868553), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user returned (object #0 (::omero::model::Image)
06:27:51 {
06:27:51 _id = object #1 (::omero::RLong)
06:27:51 {
06:27:51 _val = 6287
06:27:51 }
06:27:51 _details = <nil>
06:27:51 _loaded = False
06:27:51 _version = <nil>
06:27:51 _series = <nil>
06:27:51 _acquisitionDate = <nil>
06:27:51 _archived = <nil>
06:27:51 _partial = <nil>
06:27:51 _format = <nil>
06:27:51 _imagingEnvironment = <nil>
06:27:51 _objectiveSettings = <nil>
06:27:51 _instrument = <nil>
06:27:51 _stageLabel = <nil>
06:27:51 _experiment = <nil>
06:27:51 _pixelsSeq = {}
06:27:51 _pixelsLoaded = False
06:27:51 _wellSamplesSeq = {}
06:27:51 _wellSamplesLoaded = False
06:27:51 _roisSeq = {}
06:27:51 _roisLoaded = False
06:27:51 _datasetLinksSeq = {}
06:27:51 _datasetLinksLoaded = False
06:27:51 _datasetLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _folderLinksSeq = {}
06:27:51 _folderLinksLoaded = False
06:27:51 _folderLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _fileset = <nil>
06:27:51 _annotationLinksSeq = {}
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _name = <nil>
06:27:51 _description = <nil>
06:27:51 }, 9022), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir returned '7dc9c696-7d1f-4a1a-80c1-8dedcc112bcc_4195/588ab604-d342-4612-b6d5-2b397bfc0e40', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestRepository::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRepository::test_dir returned '0f4c5ef3-1fec-4e23-b27c-7377dcd2800c_4196/9096f5f1-b21b-47c8-8d31-a99752c39060', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir returned 'a31af40b-6b54-415e-a0c5-ad1c2298204f_4197/b8f8b172-d2cd-4c21-885b-1597a65af41d', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir returned '725a0a55-da38-4a12-8663-08f84928829a_4198/1863c075-375f-4f57-99c4-5a4add33ab33', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir returned '4cffb696-b561-487b-afe3-0cb6092a767e_4210/70c1e38d-bfb8-47de-acef-daf5600a757c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir returned '71d6cf77-849f-42c7-abfb-92e4abfec114_4215/fa7fa5fd-0652-432d-be3a-0807e2efd089', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir returned 'f812cfc6-adca-43a8-8365-258078c13047_4216/171d3de9-5891-45f2-b0ba-f0b1af0c0e6c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir returned '6e8a5a46-d194-49cf-8716-51ff5d8275b2_4217/1428e588-2006-4fd2-bed8-7d895ad08c23', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir returned '9fd49165-6c21-4247-bf27-e30a93c70222_4218/3bfb9304-ab5c-4e9e-b5a0-e5a7f594edc9', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir returned '6d5396c2-0774-4929-9e9b-61ae2c412836_4219/1ef29036-8dee-467a-acbf-8e24c1237c05', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir returned 'c40b7891-7815-4fb5-a17a-2aa129670450_4220/6261f7f6-ad70-4b81-b6b8-339be837fb0a', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir returned 'fa661a73-9fdb-4fc6-8614-c65810942b66_4221/75afa949-0f4d-4fdc-a8ca-da4bd08f653d', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir returned 'c0c8864a-e46e-4bbb-af9a-73b60a8046f7_4223/e6028bb7-2a73-4ef9-9065-4e31ad0ce1f3', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage returned 3aca1b8a-20a8-4f97-bff8-b7fc921c66e4/7ac0405b-1d0b-49fd-8a28-53b31bf113acomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562 returned (b83246fa-be3c-49bd-8e8e-ce01686844f6/b45446cf-c8ff-43f1-8ac4-1b83ac2466b3omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000, object #0 (::omero::model::OriginalFile)
06:27:51 {
06:27:51 _id = object #1 (::omero::RLong)
06:27:51 {
06:27:51 _val = 5702
06:27:51 }
06:27:51 _details = object #2 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = object #3 (::omero::model::Experimenter)
06:27:51 {
06:27:51 _id = object #4 (::omero::RLong)
06:27:51 {
06:27:51 _val = 0
06:27:51 }
06:27:51 _details = <nil>
06:27:51 _loaded = False
06:27:51 _version = <nil>
06:27:51 _groupExperimenterMapSeq =
06:27:51 {
06:27:51 }
06:27:51 _groupExperimenterMapLoaded = False
06:27:51 _omeName = <nil>
06:27:51 _firstName = <nil>
06:27:51 _middleName = <nil>
06:27:51 _lastName = <nil>
06:27:51 _institution = <nil>
06:27:51 _ldap = <nil>
06:27:51 _email = <nil>
06:27:51 _config =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 }
06:27:51 _group = object #5 (::omero::model::ExperimenterGroup)
06:27:51 {
06:27:51 _id = object #6 (::omero::RLong)
06:27:51 {
06:27:51 _val = 1
06:27:51 }
06:27:51 _details = object #7 (::omero::model::Details)
06:27:51 {
06:27:51 _owner = <nil>
06:27:51 _group = <nil>
06:27:51 _creationEvent = <nil>
06:27:51 _updateEvent = <nil>
06:27:51 _permissions = object #8 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = False
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -52
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 7ac0405b-1d0b-49fd-8a28-53b31bf113ac
06:27:51 key = omero.session.uuid
06:27:51 value = 3aca1b8a-20a8-4f97-bff8-b7fc921c66e4
06:27:51 }
06:27:51 _event = object #9 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 9290
06:27:51 sessionUuid = *********
06:27:51 userId = 4230
06:27:51 userName = abbc9306-92b6-4bd7-b478-f465a28ea60a
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 3148
06:27:51 groupName = 2e4786af-cac5-484e-99a6-e53b78a45f67
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = -1
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 3148
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #10 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = object #11 (::omero::RInt)
06:27:51 {
06:27:51 _val = 0
06:27:51 }
06:27:51 _name = object #12 (::omero::RString)
06:27:51 {
06:27:51 _val = user
06:27:51 }
06:27:51 _ldap = object #13 (::omero::RBool)
06:27:51 {
06:27:51 _val = False
06:27:51 }
06:27:51 _groupExperimenterMapSeq =
06:27:51 {
06:27:51 }
06:27:51 _groupExperimenterMapLoaded = False
06:27:51 _config =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _description = <nil>
06:27:51 }
06:27:51 _creationEvent = object #14 (::omero::model::Event)
06:27:51 {
06:27:51 _id = object #15 (::omero::RLong)
06:27:51 {
06:27:51 _val = 99437
06:27:51 }
06:27:51 _details = <nil>
06:27:51 _loaded = False
06:27:51 _status = <nil>
06:27:51 _time = <nil>
06:27:51 _experimenter = <nil>
06:27:51 _experimenterGroup = <nil>
06:27:51 _type = <nil>
06:27:51 _containingEvent = <nil>
06:27:51 _logsSeq =
06:27:51 {
06:27:51 }
06:27:51 _logsLoaded = False
06:27:51 _session = <nil>
06:27:51 }
06:27:51 _updateEvent = <object #14>
06:27:51 _permissions = object #16 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 [0] = False
06:27:51 [1] = True
06:27:51 [2] = True
06:27:51 [3] = False
06:27:51 [4] = True
06:27:51 [5] = True
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 _externalInfo = <nil>
06:27:51 _call =
06:27:51 {
06:27:51 key = omero.client.uuid
06:27:51 value = 7ac0405b-1d0b-49fd-8a28-53b31bf113ac
06:27:51 key = omero.session.uuid
06:27:51 value = 3aca1b8a-20a8-4f97-bff8-b7fc921c66e4
06:27:51 }
06:27:51 _event = object #17 (::omero::sys::EventContext)
06:27:51 {
06:27:51 shareId = -1
06:27:51 sessionId = 9290
06:27:51 sessionUuid = *********
06:27:51 userId = 4230
06:27:51 userName = abbc9306-92b6-4bd7-b478-f465a28ea60a
06:27:51 sudoerId = <nil>
06:27:51 sudoerName = <nil>
06:27:51 groupId = 3148
06:27:51 groupName = 2e4786af-cac5-484e-99a6-e53b78a45f67
06:27:51 isAdmin = False
06:27:51 adminPrivileges =
06:27:51 {
06:27:51 }
06:27:51 eventId = -1
06:27:51 eventType = User
06:27:51 memberOfGroups =
06:27:51 {
06:27:51 [0] = 3148
06:27:51 [1] = 1
06:27:51 }
06:27:51 leaderOfGroups =
06:27:51 {
06:27:51 }
06:27:51 groupPermissions = object #18 (::omero::model::Permissions)
06:27:51 {
06:27:51 _restrictions =
06:27:51 {
06:27:51 }
06:27:51 _extendedRestrictions =
06:27:51 {
06:27:51 }
06:27:51 _perm1 = -120
06:27:51 }
06:27:51 }
06:27:51 }
06:27:51 _loaded = True
06:27:51 _version = <object #11>
06:27:51 _pixelsFileMapsSeq =
06:27:51 {
06:27:51 }
06:27:51 _pixelsFileMapsLoaded = False
06:27:51 _pixelsFileMapsCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _path = object #19 (::omero::RString)
06:27:51 {
06:27:51 _val = /
06:27:51 }
06:27:51 _repo = object #20 (::omero::RString)
06:27:51 {
06:27:51 _val = ScriptRepo
06:27:51 }
06:27:51 _size = object #21 (::omero::RLong)
06:27:51 {
06:27:51 _val = 168
06:27:51 }
06:27:51 _atime = <nil>
06:27:51 _mtime = <nil>
06:27:51 _ctime = <nil>
06:27:51 _hasher = object #22 (::omero::model::ChecksumAlgorithm)
06:27:51 {
06:27:51 _id = object #23 (::omero::RLong)
06:27:51 {
06:27:51 _val = 6
06:27:51 }
06:27:51 _details = <nil>
06:27:51 _loaded = False
06:27:51 _value = <nil>
06:27:51 }
06:27:51 _hash = object #24 (::omero::RString)
06:27:51 {
06:27:51 _val = 0232cafa500bc438e2aecf7a78348d70652575a6
06:27:51 }
06:27:51 _mimetype = object #25 (::omero::RString)
06:27:51 {
06:27:51 _val = text/x-python
06:27:51 }
06:27:51 _filesetEntriesSeq =
06:27:51 {
06:27:51 }
06:27:51 _filesetEntriesLoaded = True
06:27:51 _annotationLinksSeq =
06:27:51 {
06:27:51 }
06:27:51 _annotationLinksLoaded = False
06:27:51 _annotationLinksCountPerOwner =
06:27:51 {
06:27:51 }
06:27:51 _name = object #26 (::omero::RString)
06:27:51 {
06:27:51 _val = 124aa599-7496-47b5-99f2-df84ca8870a6.py
06:27:51 }
06:27:51 }), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:27:51 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/decorators.py:82: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:27:51 log.warn(
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1313: DeprecationWarning: This method is deprecated as of OMERO 5.3.0
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1074: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use upload_plane instead
06:27:51 warnings.warn(
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:27:51 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:27:51 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1259: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use reset_rendering_settings
06:27:51 warnings.warn(
06:27:51 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:27:51 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration/junit-results.xml -
06:27:51 =========================== short test summary info ============================
06:27:51 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:27:51 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:27:51 + where 2 = NonZeroReturnCode('assert failed').rv
06:27:51 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:27:51 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:27:51 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:27:51 + where 2 = NonZeroReturnCode('assert failed').rv
06:27:51 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:27:51 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 recv() returned zero
06:27:51 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 recv() returned zero
06:27:51 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 recv() returned zero
06:27:51 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 recv() returned zero
06:27:51 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:27:51 recv() returned zero
06:27:51 FAILED test/integration/gatewaytest/test_user.py::TestUser::testSaveAs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 FAILED test/integration/test_util.py::TestUpgradeCheck::testReal - assert False is True
06:27:51 + where False = isUpgradeNeeded()
06:27:51 + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f009c751d60>.isUpgradeNeeded
06:27:51 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnail - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testLinePlots - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProjections - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProperties - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testShortname - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testImageDate - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExport - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:27:51 = 11 failed, 1943 passed, 9 skipped, 36 deselected, 1924 warnings, 62 errors in 15197.33s (4:13:17) =
06:27:54 !! 10/24/24 07:27:53.707 error: 257 communicators not destroyed during global destruction.
06:27:54 Result: 1
06:27:54
06:27:54 BUILD SUCCESSFUL
06:27:54 Total time: 253 minutes 21 seconds
06:27:54 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroFS/build.xml integration -Dtestreports.dir=target/reports/integration
06:27:54 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:27:54 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/build.xml
06:27:54 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
06:27:54
06:27:54 python-integration:
06:27:54 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration
06:28:01 ============================= test session starts ==============================
06:28:01 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:28:01 cachedir: .pytest_cache
06:28:01 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:28:01 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:28:01 configfile: pytest.ini
06:28:01 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:28:01 collecting ... collected 1 item
06:28:01 test/integration/test_dbclient.py::TestDropBoxClient::test1 PASSED [100%]
06:28:01 =============================== warnings summary ===============================
06:28:01 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:28:01 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:28:01 import sys, string, imp, os, threading, warnings, datetime
06:28:01 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:28:01 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:28:01 warnings.warn(
06:28:01 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:28:01 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:28:01 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:28:01 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:28:01 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:28:01 from pkg_resources import DistributionNotFound, get_distribution
06:28:01 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:28:01 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration/junit-results.xml -
06:28:01 ======================== 1 passed, 4 warnings in 0.21s =========================
06:28:01
06:28:01 BUILD SUCCESSFUL
06:28:01 Total time: 7 seconds
06:28:01 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroWeb/build.xml integration -Dtestreports.dir=target/reports/integration
06:28:01 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:28:01 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/build.xml
06:28:01 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:28:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:28:02
06:28:02 python-integration:
06:28:02 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration
06:28:02 ============================= test session starts ==============================
06:28:02 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:28:02 cachedir: .pytest_cache
06:28:02 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:28:02 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:28:02 configfile: pytest.ini
06:28:02 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:28:04 collecting ... collected 430 items
06:28:29 test/integration/test_annotate.py::TestMapAnnotations::test_annotate_map PASSED [ 0%]
06:28:52 test/integration/test_annotate.py::TestTagging::test_create_tag PASSED [ 0%]
06:29:05 test/integration/test_annotate.py::TestTagging::test_annotate_tag PASSED [ 0%]
06:29:29 test/integration/test_annotate.py::TestBatchAnnotate::test_batch_annotate_tag PASSED [ 0%]
06:29:53 test/integration/test_annotate.py::TestFileAnnotations::test_add_fileannotations_form PASSED [ 1%]
06:30:02 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[1] PASSED [ 1%]
06:30:11 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[2] PASSED [ 1%]
06:30:35 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Plate] PASSED [ 1%]
06:30:43 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Image] PASSED [ 2%]
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06:31:10 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-foo] PASSED [ 2%]
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06:33:19 test/integration/test_api_containers.py::TestContainers::test_screens PASSED [ 6%]
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06:33:56 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype2] PASSED [ 7%]
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06:34:53 test/integration/test_api_errors.py::TestErrors::test_save_put_id PASSED [ 8%]
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06:34:53 test/integration/test_api_errors.py::TestErrors::test_marshal_validation PASSED [ 9%]
06:35:02 test/integration/test_api_errors.py::TestErrors::test_security_violation PASSED [ 9%]
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06:35:15 test/integration/test_api_errors.py::TestErrors::test_project_validation PASSED [ 10%]
06:35:39 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-Experimenter] PASSED [ 10%]
06:35:48 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-ExperimenterGroup] PASSED [ 10%]
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06:36:15 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[Experimenter] PASSED [ 11%]
06:36:24 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[ExperimenterGroup] PASSED [ 11%]
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06:42:43 test/integration/test_chown.py::TestChown::test_chown_dry_run[admin] PASSED [ 21%]
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06:42:54 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-colleagues.label] PASSED [ 22%]
06:42:57 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-leaders.label] PASSED [ 23%]
06:43:00 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-everyone.label] PASSED [ 23%]
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06:45:03 test/integration/test_download.py::TestDownload::test_orphaned_image_download PASSED [ 29%]
06:45:07 test/integration/test_download.py::TestDownload::test_image_in_dataset_download PASSED [ 30%]
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06:46:26 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[None] PASSED [ 32%]
06:46:27 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[10] PASSED [ 32%]
06:46:45 test/integration/test_history.py::TestHistory::test_history PASSED [ 33%]
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06:46:45 test/integration/test_history.py::TestHistory::test_calendar_month PASSED [ 33%]
06:47:00 test/integration/test_links.py::TestLinks::test_link_project_datasets PASSED [ 33%]
06:47:01 test/integration/test_links.py::TestLinks::test_link_datasets_images PASSED [ 33%]
06:47:01 test/integration/test_links.py::TestLinks::test_link_unlink_tagset_tags PASSED [ 34%]
06:47:01 test/integration/test_links.py::TestLinks::test_unlink_screen_plate PASSED [ 34%]
06:47:16 test/integration/test_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 34%]
06:47:16 test/integration/test_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 34%]
06:47:16 test/integration/test_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 35%]
06:47:16 test/integration/test_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 35%]
06:47:16 test/integration/test_login.py::TestLogin::test_get_login_page PASSED [ 35%]
06:47:22 test/integration/test_login.py::TestLogin::test_login_redirect[] PASSED [ 35%]
06:47:28 test/integration/test_login.py::TestLogin::test_login_redirect[/webclient/usertags/] PASSED [ 36%]
06:47:35 test/integration/test_login.py::TestLogin::test_login_view PASSED [ 36%]
06:47:54 test/integration/test_marshal.py::TestImgDetail::test_image_detail PASSED [ 36%]
06:48:10 test/integration/test_metadata.py::TestCoreMetadata::test_pixel_size_units PASSED [ 36%]
06:48:10 test/integration/test_metadata.py::TestCoreMetadata::test_none_pixel_size PASSED [ 36%]
06:48:25 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True] PASSED [ 37%]
06:48:25 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False] PASSED [ 37%]
06:48:26 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file PASSED [ 37%]
06:48:50 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[shrink] PASSED [ 37%]
06:48:59 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[trim] PASSED [ 38%]
06:49:08 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[expand] PASSED [ 38%]
06:49:17 test/integration/test_plategrid.py::TestPlateGrid::test_well_images PASSED [ 38%]
06:49:20 test/integration/test_plategrid.py::TestPlateGrid::test_instantiation PASSED [ 38%]
06:49:23 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_grid_size PASSED [ 39%]
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06:49:29 test/integration/test_plategrid.py::TestPlateGrid::test_full_grid PASSED [ 39%]
06:49:32 test/integration/test_plategrid.py::TestPlateGrid::test_acquisition_date PASSED [ 39%]
06:49:35 test/integration/test_plategrid.py::TestPlateGrid::test_creation_date PASSED [ 40%]
06:49:38 test/integration/test_plategrid.py::TestPlateGrid::test_description PASSED [ 40%]
06:49:48 test/integration/test_plategrid.py::TestScreenPlateTables::test_get_plate_table PASSED [ 40%]
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06:50:06 test/integration/test_rendering.py::TestRendering::test_all_rendering_defs PASSED [ 41%]
06:50:25 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request PASSED [ 41%]
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06:50:42 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_large_image PASSED [ 42%]
06:50:45 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_negative_resolution PASSED [ 42%]
06:50:49 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_invalid_resolution PASSED [ 42%]
06:51:01 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_big_image PASSED [ 43%]
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06:51:22 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params_big_image PASSED [ 43%]
06:51:33 test/integration/test_rendering.py::TestRenderImageRegion::test_render_birds_eye_view_big_image PASSED [ 43%]
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06:52:04 test/integration/test_scripts.py::TestScripts::test_script_ui_defaults PASSED [ 44%]
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06:52:35 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[SplitView] PASSED [ 45%]
06:52:35 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[Thumbnail] PASSED [ 45%]
06:52:36 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[MakeMovie] PASSED [ 45%]
06:52:52 test/integration/test_show.py::TestShow::test_empty_path PASSED [ 45%]
06:52:52 test/integration/test_show.py::TestShow::test_project_legacy_path PASSED [ 46%]
06:52:52 test/integration/test_show.py::TestShow::test_projects_legacy_show PASSED [ 46%]
06:52:52 test/integration/test_show.py::TestShow::test_project_dataset_legacy_path PASSED [ 46%]
06:52:52 test/integration/test_show.py::TestShow::test_project_dataset_image_legacy_path PASSED [ 46%]
06:52:52 test/integration/test_show.py::TestShow::test_tag_redirect[1] PASSED [ 46%]
06:52:52 test/integration/test_show.py::TestShow::test_tag_redirect[2] PASSED [ 47%]
06:52:52 test/integration/test_show.py::TestShow::test_tagset_redirect[1] PASSED [ 47%]
06:52:52 test/integration/test_show.py::TestShow::test_tagset_redirect[2] PASSED [ 47%]
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06:52:52 test/integration/test_show.py::TestShow::test_tag_legacy_path[2] PASSED [ 48%]
06:52:52 test/integration/test_show.py::TestShow::test_tagset_tag_legacy_path PASSED [ 48%]
06:52:52 test/integration/test_show.py::TestShow::test_image_legacy_path PASSED [ 48%]
06:52:52 test/integration/test_show.py::TestShow::test_screen_legacy_path PASSED [ 48%]
06:52:52 test/integration/test_show.py::TestShow::test_screen_plate_legacy_path PASSED [ 49%]
06:52:52 test/integration/test_show.py::TestShow::test_screen_plate_well_show PASSED [ 49%]
06:52:52 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[0] PASSED [ 49%]
06:52:52 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[1] PASSED [ 49%]
06:52:53 test/integration/test_show.py::TestShow::test_project_dataset_image_show PASSED [ 50%]
06:52:53 test/integration/test_show.py::TestShow::test_project_dataset_image_roi_show PASSED [ 50%]
06:52:53 test/integration/test_show.py::TestShow::test_project_by_id PASSED [ 50%]
06:52:53 test/integration/test_show.py::TestShow::test_project_by_name PASSED [ 50%]
06:52:53 test/integration/test_show.py::TestShow::test_tag_by_value[1] PASSED [ 50%]
06:52:53 test/integration/test_show.py::TestShow::test_tag_by_value[2] PASSED [ 51%]
06:52:53 test/integration/test_show.py::TestShow::test_tagset_tag_by_id PASSED [ 51%]
06:52:53 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 51%]
06:52:53 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 51%]
06:52:53 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:52:53 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:52:53 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:52:53 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:52:53 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 53%]
06:52:53 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 53%]
06:52:53 test/integration/test_show.py::TestShow::test_well_by_name[A10] PASSED [ 53%]
06:52:53 test/integration/test_show.py::TestShow::test_well_by_name[1J] PASSED [ 53%]
06:52:53 test/integration/test_show.py::TestShow::test_screen_plate_run_illegal_run PASSED [ 53%]
06:52:53 test/integration/test_show.py::TestShow::test_path_to_no_objects PASSED [ 54%]
06:52:54 test/integration/test_show.py::TestShow::test_project_dataset_image PASSED [ 54%]
06:52:54 test/integration/test_show.py::TestShow::test_project_dataset_images_pagination PASSED [ 54%]
06:52:54 test/integration/test_show.py::TestShow::test_orphaned_pagination PASSED [ 54%]
06:52:54 test/integration/test_show.py::TestShow::test_get_image_ids_dataset PASSED [ 55%]
06:52:54 test/integration/test_show.py::TestShow::test_image PASSED [ 55%]
06:52:54 test/integration/test_show.py::TestShow::test_roi PASSED [ 55%]
06:52:54 test/integration/test_show.py::TestShow::test_shape PASSED [ 55%]
06:52:54 test/integration/test_show.py::TestShow::test_well_image_shape PASSED [ 56%]
06:52:54 test/integration/test_show.py::TestShow::test_image_orphan PASSED [ 56%]
06:52:54 test/integration/test_show.py::TestShow::test_image_multi_link PASSED [ 56%]
06:52:54 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset PASSED [ 56%]
06:52:54 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset_project PASSED [ 56%]
06:52:54 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_project PASSED [ 57%]
06:52:54 test/integration/test_show.py::TestShow::test_dataset PASSED [ 57%]
06:52:54 test/integration/test_show.py::TestShow::test_dataset_multi_link PASSED [ 57%]
06:52:54 test/integration/test_show.py::TestShow::test_dataset_multi_link_restrict_project PASSED [ 57%]
06:52:54 test/integration/test_show.py::TestShow::test_dataset_orphan PASSED [ 58%]
06:52:54 test/integration/test_show.py::TestShow::test_project PASSED [ 58%]
06:52:54 test/integration/test_show.py::TestShow::test_acquisition PASSED [ 58%]
06:52:55 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate PASSED [ 58%]
06:52:55 test/integration/test_show.py::TestShow::test_acquisition_restrict_screen PASSED [ 59%]
06:52:55 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate_screen PASSED [ 59%]
06:52:55 test/integration/test_show.py::TestShow::test_well PASSED [ 59%]
06:52:55 test/integration/test_show.py::TestShow::test_well_multi PASSED [ 59%]
06:52:55 test/integration/test_show.py::TestShow::test_well_image PASSED [ 60%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_multi PASSED [ 60%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_plate_multi PASSED [ 60%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_screen_multi PASSED [ 60%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_multi PASSED [ 60%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_screen_multi PASSED [ 61%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_screen_multi PASSED [ 61%]
06:52:55 test/integration/test_show.py::TestShow::test_well_restrict_plate_screen_multi PASSED [ 61%]
06:52:55 test/integration/test_show.py::TestShow::test_plate PASSED [ 61%]
06:52:55 test/integration/test_show.py::TestShow::test_plate_restrict_screen PASSED [ 62%]
06:52:55 test/integration/test_show.py::TestShow::test_screen PASSED [ 62%]
06:52:58 test/integration/test_simple.py::TestSimple::testCurrentUser PASSED [ 62%]
06:53:02 test/integration/test_simple.py::TestSimple::testImport PASSED [ 62%]
06:53:28 test/integration/test_table.py::TestOmeroTables::test_table_html PASSED [ 63%]
06:53:38 test/integration/test_table.py::TestOmeroTables::test_table_pagination PASSED [ 63%]
06:53:48 test/integration/test_table.py::TestOmeroTables::test_table_query PASSED [ 63%]
06:53:57 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result0] PASSED [ 63%]
06:54:07 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result1] PASSED [ 63%]
06:54:16 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result2] PASSED [ 64%]
06:54:25 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result3] PASSED [ 64%]
06:54:35 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result4] PASSED [ 64%]
06:54:45 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result5] PASSED [ 64%]
06:54:54 test/integration/test_table.py::TestOmeroTables::test_table_metadata PASSED [ 65%]
06:55:03 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result0] PASSED [ 65%]
06:55:13 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result1] PASSED [ 65%]
06:55:22 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result0] PASSED [ 65%]
06:55:32 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result1] PASSED [ 66%]
06:55:41 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result2] PASSED [ 66%]
06:55:50 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity0] PASSED [ 66%]
06:56:00 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity1] PASSED [ 66%]
06:56:09 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity2] PASSED [ 66%]
06:56:18 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity3] PASSED [ 67%]
06:56:28 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity4] PASSED [ 67%]
06:56:37 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity5] PASSED [ 67%]
06:56:46 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity6] PASSED [ 67%]
06:56:55 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity7] PASSED [ 68%]
06:57:04 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity8] PASSED [ 68%]
06:57:14 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity9] PASSED [ 68%]
06:57:29 test/integration/test_tags.py::TestTags::test_create_tag_and_tagset PASSED [ 68%]
06:57:29 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tagset] PASSED [ 69%]
06:57:29 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tag] PASSED [ 69%]
06:57:29 test/integration/test_tags.py::TestTags::test_add_edit_and_remove_tag PASSED [ 69%]
06:57:45 test/integration/test_tags.py::TestTags::test_add_remove_tags PASSED [ 69%]
06:58:00 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[None] PASSED [ 70%]
06:58:01 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[100] PASSED [ 70%]
06:58:01 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[None] PASSED [ 70%]
06:58:01 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[100] PASSED [ 70%]
06:58:02 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb_set PASSED [ 70%]
06:58:18 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-1] PASSED [ 71%]
06:58:19 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-0] PASSED [ 71%]
06:58:19 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-1] PASSED [ 71%]
06:58:20 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-0] PASSED [ 71%]
06:58:31 test/integration/test_tree.py::TestTree::test_marshal_experimenter PASSED [ 72%]
06:58:34 test/integration/test_tree.py::TestTree::test_marshal_projects_no_results PASSED [ 72%]
06:58:37 test/integration/test_tree.py::TestTree::test_marshal_projects_user PASSED [ 72%]
06:58:42 test/integration/test_tree.py::TestTree::test_marshal_projects_another_user PASSED [ 72%]
06:58:45 test/integration/test_tree.py::TestTree::test_marshal_projects_another_group PASSED [ 73%]
06:58:47 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups PASSED [ 73%]
06:58:53 test/integration/test_tree.py::TestTree::test_marshal_projects_all_users PASSED [ 73%]
06:58:58 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups_all_users PASSED [ 73%]
06:59:01 test/integration/test_tree.py::TestTree::test_marshal_datasets_no_results PASSED [ 73%]
06:59:04 test/integration/test_tree.py::TestTree::test_marshal_datasets_user PASSED [ 74%]
06:59:09 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_user PASSED [ 74%]
06:59:12 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_group PASSED [ 74%]
06:59:15 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups PASSED [ 74%]
06:59:21 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_users PASSED [ 75%]
06:59:26 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups_all_users PASSED [ 75%]
06:59:29 test/integration/test_tree.py::TestTree::test_marshal_datasets_project PASSED [ 75%]
06:59:35 test/integration/test_tree.py::TestTree::test_marshal_datasets_project_crosslink PASSED [ 75%]
06:59:38 test/integration/test_tree.py::TestTree::test_marshal_images_no_results PASSED [ 76%]
06:59:41 test/integration/test_tree.py::TestTree::test_marshal_images_user PASSED [ 76%]
06:59:45 test/integration/test_tree.py::TestTree::test_marshal_images_user_pixels PASSED [ 76%]
06:59:48 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb0] PASSED [ 76%]
06:59:51 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb1] PASSED [ 76%]
06:59:57 test/integration/test_tree.py::TestTree::test_marshal_images_another_user PASSED [ 77%]
07:00:00 test/integration/test_tree.py::TestTree::test_marshal_images_another_group PASSED [ 77%]
07:00:03 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups PASSED [ 77%]
07:00:09 test/integration/test_tree.py::TestTree::test_marshal_images_all_users PASSED [ 77%]
07:00:15 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups_all_users PASSED [ 78%]
07:00:18 test/integration/test_tree.py::TestTree::test_marshal_images_dataset PASSED [ 78%]
07:00:21 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_no_pixels PASSED [ 78%]
07:00:24 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_date PASSED [ 78%]
07:00:30 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_crosslink PASSED [ 79%]
07:00:36 test/integration/test_tree.py::TestTree::test_marshal_images_share PASSED [ 79%]
07:00:39 test/integration/test_tree.py::TestTree::test_marshal_screens_no_results PASSED [ 79%]
07:00:42 test/integration/test_tree.py::TestTree::test_marshal_screens_user PASSED [ 79%]
07:00:48 test/integration/test_tree.py::TestTree::test_marshal_screens_another_user PASSED [ 80%]
07:00:51 test/integration/test_tree.py::TestTree::test_marshal_screens_another_group PASSED [ 80%]
07:00:54 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups PASSED [ 80%]
07:01:00 test/integration/test_tree.py::TestTree::test_marshal_screens_all_users PASSED [ 80%]
07:01:05 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups_all_users PASSED [ 80%]
07:01:08 test/integration/test_tree.py::TestTree::test_marshal_plates_no_results PASSED [ 81%]
07:01:11 test/integration/test_tree.py::TestTree::test_marshal_plates_user PASSED [ 81%]
07:01:17 test/integration/test_tree.py::TestTree::test_marshal_plates_another_user PASSED [ 81%]
07:01:20 test/integration/test_tree.py::TestTree::test_marshal_plates_another_group PASSED [ 81%]
07:01:23 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups PASSED [ 82%]
07:01:29 test/integration/test_tree.py::TestTree::test_marshal_plates_all_users PASSED [ 82%]
07:01:35 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups_all_users PASSED [ 82%]
07:01:37 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_no_results PASSED [ 82%]
07:01:40 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_user PASSED [ 83%]
07:01:46 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_user PASSED [ 83%]
07:01:49 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_group PASSED [ 83%]
07:01:52 test/integration/test_tree.py::TestTree::test_marshal_orphaned_no_results PASSED [ 83%]
07:01:55 test/integration/test_tree.py::TestTree::test_marshal_orphaned PASSED [ 83%]
07:02:01 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_user PASSED [ 84%]
07:02:04 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_group PASSED [ 84%]
07:02:07 test/integration/test_tree.py::TestTree::test_marshal_orphaned_all_groups PASSED [ 84%]
07:02:10 test/integration/test_tree.py::TestTree::test_marshal_tags_no_results PASSED [ 84%]
07:02:16 test/integration/test_tree.py::TestTree::test_marshal_tags_user PASSED [ 85%]
07:02:22 test/integration/test_tree.py::TestTree::test_marshal_tags_another_user PASSED [ 85%]
07:02:25 test/integration/test_tree.py::TestTree::test_marshal_tags_another_group PASSED [ 85%]
07:02:31 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups PASSED [ 85%]
07:02:37 test/integration/test_tree.py::TestTree::test_marshal_tags_all_users PASSED [ 86%]
07:02:43 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups_all_users PASSED [ 86%]
07:02:49 test/integration/test_tree.py::TestTree::test_marshal_tags_orphaned PASSED [ 86%]
07:02:55 test/integration/test_tree.py::TestTree::test_marshal_tags_tagset PASSED [ 86%]
07:02:58 test/integration/test_tree.py::TestTree::test_marshal_tagged_no_results PASSED [ 86%]
07:03:04 test/integration/test_tree.py::TestTree::test_marshal_tagged_user PASSED [ 87%]
07:03:10 test/integration/test_tree.py::TestTree::test_marshal_tagged_perms PASSED [ 87%]
07:03:13 test/integration/test_tree.py::TestTree::test_marshal_tagged_image_pixels PASSED [ 87%]
07:03:19 test/integration/test_tree.py::TestTree::test_marshal_shares_user PASSED [ 87%]
07:03:25 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user PASSED [ 88%]
07:03:31 test/integration/test_tree.py::TestTree::test_marshal_shares_user_owned PASSED [ 88%]
07:03:36 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user_owned PASSED [ 88%]
07:03:42 test/integration/test_tree.py::TestTree::test_marshal_discussions_user PASSED [ 88%]
07:03:48 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user PASSED [ 89%]
07:03:53 test/integration/test_tree.py::TestTree::test_marshal_discussions_user_owned PASSED [ 89%]
07:03:59 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user_owned PASSED [ 89%]
07:04:07 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag PASSED [ 89%]
07:04:13 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag_userB PASSED [ 90%]
07:04:18 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_userA_userB PASSED [ 90%]
07:04:24 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_projects PASSED [ 90%]
07:04:30 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_tags_comments_project PASSED [ 90%]
07:04:33 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_filter_by_namespace PASSED [ 90%]
07:05:01 test/integration/test_webadmin.py::TestUserSettings::test_user_settings_page PASSED [ 91%]
07:05:10 test/integration/test_webadmin.py::TestUserSettings::test_edit_settings PASSED [ 91%]
07:05:31 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[user] PASSED [ 91%]
07:05:37 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[restricted_administrator] PASSED [ 91%]
07:05:41 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[administrator] PASSED [ 92%]
07:05:47 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field0] PASSED [ 92%]
07:05:52 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field1] PASSED [ 92%]
07:05:59 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field2] PASSED [ 92%]
07:06:04 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field3] PASSED [ 93%]
07:06:11 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field4] PASSED [ 93%]
07:06:17 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field5] PASSED [ 93%]
07:06:23 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field6] PASSED [ 93%]
07:06:29 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege0] PASSED [ 93%]
07:06:34 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege1] PASSED [ 94%]
07:06:38 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege2] PASSED [ 94%]
07:06:43 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege3] PASSED [ 94%]
07:06:48 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege4] PASSED [ 94%]
07:06:54 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege5] PASSED [ 95%]
07:06:59 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege6] PASSED [ 95%]
07:07:03 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege7] PASSED [ 95%]
07:07:08 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege8] PASSED [ 95%]
07:07:13 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege9] PASSED [ 96%]
07:07:28 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges0] PASSED [ 96%]
07:07:42 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges1] PASSED [ 96%]
07:07:57 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges2] PASSED [ 96%]
07:08:11 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges3] PASSED [ 96%]
07:08:26 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges4] PASSED [ 97%]
07:08:47 test/integration/test_webadmin.py::TestExperimenters::test_restricted_admin_create_edit_user PASSED [ 97%]
07:09:20 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges0] PASSED [ 97%]
07:09:39 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges1] PASSED [ 97%]
07:09:58 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges2] PASSED [ 98%]
07:10:07 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions0] PASSED [ 98%]
07:10:16 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions1] PASSED [ 98%]
07:10:25 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions2] PASSED [ 98%]
07:10:33 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions3] PASSED [ 99%]
07:10:40 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field0] PASSED [ 99%]
07:10:47 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field1] PASSED [ 99%]
07:11:45 test/integration/test_webadmin.py::TestGroups::test_validation_errors PASSED [ 99%]
07:11:58 test/integration/test_webadmin.py::TestGroups::test_save_experimenter PASSED [100%]
07:11:58 =============================== warnings summary ===============================
07:11:58 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:11:58 import sys, string, imp, os, threading, warnings, datetime
07:11:58 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:11:58 warnings.warn(
07:11:58 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:11:58 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:11:58 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:11:58 from pkg_resources import DistributionNotFound, get_distribution
07:11:58 OmeroWeb/test/integration/test_annotate.py: 69 warnings
07:11:58 OmeroWeb/test/integration/test_api_containers.py: 177 warnings
07:11:58 OmeroWeb/test/integration/test_api_errors.py: 19 warnings
07:11:58 OmeroWeb/test/integration/test_api_experimenters_groups.py: 57 warnings
07:11:58 OmeroWeb/test/integration/test_api_images.py: 13 warnings
07:11:58 OmeroWeb/test/integration/test_api_login.py: 8 warnings
07:11:58 OmeroWeb/test/integration/test_api_projects.py: 87 warnings
07:11:58 OmeroWeb/test/integration/test_api_rois.py: 25 warnings
07:11:58 OmeroWeb/test/integration/test_api_wells.py: 20 warnings
07:11:58 OmeroWeb/test/integration/test_chgrp.py: 43 warnings
07:11:58 OmeroWeb/test/integration/test_chown.py: 16 warnings
07:11:58 OmeroWeb/test/integration/test_config.py: 5 warnings
07:11:58 OmeroWeb/test/integration/test_containers.py: 19 warnings
07:11:58 OmeroWeb/test/integration/test_csrf.py: 38 warnings
07:11:58 OmeroWeb/test/integration/test_decorators.py: 5 warnings
07:11:58 OmeroWeb/test/integration/test_download.py: 28 warnings
07:11:58 OmeroWeb/test/integration/test_groups_users.py: 10 warnings
07:11:58 OmeroWeb/test/integration/test_histogram.py: 7 warnings
07:11:58 OmeroWeb/test/integration/test_history.py: 12 warnings
07:11:58 OmeroWeb/test/integration/test_links.py: 20 warnings
07:11:58 OmeroWeb/test/integration/test_login.py: 13 warnings
07:11:58 OmeroWeb/test/integration/test_marshal.py: 6 warnings
07:11:58 OmeroWeb/test/integration/test_metadata.py: 16 warnings
07:11:58 OmeroWeb/test/integration/test_plategrid.py: 29 warnings
07:11:58 OmeroWeb/test/integration/test_rendering.py: 66 warnings
07:11:58 OmeroWeb/test/integration/test_scripts.py: 38 warnings
07:11:58 OmeroWeb/test/integration/test_show.py: 4 warnings
07:11:58 OmeroWeb/test/integration/test_table.py: 110 warnings
07:11:58 OmeroWeb/test/integration/test_tags.py: 26 warnings
07:11:58 OmeroWeb/test/integration/test_thumbnails.py: 68 warnings
07:11:58 OmeroWeb/test/integration/test_webadmin.py: 104 warnings
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/core/serializers/base.py:22: RemovedInDjango50Warning: PickleSerializer is deprecated due to its security risk. Use JSONSerializer instead.
07:11:58 warnings.warn(
07:11:58 OmeroWeb/test/integration/test_api_containers.py: 67 warnings
07:11:58 OmeroWeb/test/integration/test_api_images.py: 6 warnings
07:11:58 OmeroWeb/test/integration/test_api_wells.py: 24 warnings
07:11:58 OmeroWeb/test/integration/test_containers.py: 2 warnings
07:11:58 OmeroWeb/test/integration/test_csrf.py: 5 warnings
07:11:58 OmeroWeb/test/integration/test_download.py: 9 warnings
07:11:58 OmeroWeb/test/integration/test_histogram.py: 2 warnings
07:11:58 OmeroWeb/test/integration/test_metadata.py: 2 warnings
07:11:58 OmeroWeb/test/integration/test_rendering.py: 17 warnings
07:11:58 OmeroWeb/test/integration/test_scripts.py: 30 warnings
07:11:58 OmeroWeb/test/integration/test_thumbnails.py: 23 warnings
07:11:58 OmeroWeb/test/integration/test_tree.py: 20 warnings
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:11:58 converted_plane = byte_swapped_plane.tostring()
07:11:58 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_type
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:44: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:11:58 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:11:58 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_validation
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:97: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:11:58 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:11:58 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_security_violation
07:11:58 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_validation_exception
07:11:58 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_project_validation
07:11:58 OmeroWeb/test/integration/test_api_projects.py::TestProjects::test_project_delete
07:11:58 OmeroWeb/test/integration/test_api_rois.py::TestContainers::test_roi_delete
07:11:58 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:11:58 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:11:58 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:11:58 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True]
07:11:58 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False]
07:11:58 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omeroweb/testlib/__init__.py:478: DeprecationWarning: This method is deprecated as of OMERO 5.4.0. Use get
07:11:58 warnings.warn(
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:8856: DeprecationWarning: setActiveChannels() is deprecated in OMERO 5.4.0.Use set_active_channels
07:11:58 warnings.warn("setActiveChannels() is deprecated in OMERO 5.4.0."
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:11:58 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:9118: DeprecationWarning: Deprecated in 5.4.0. Use setChannelInverted()
07:11:58 warnings.warn("Deprecated in 5.4.0. Use setChannelInverted()",
07:11:58 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:11:58 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration/junit-results.xml -
07:11:58 =============== 430 passed, 1389 warnings in 2636.08s (0:43:56) ================
07:12:00 !! 10/24/24 08:12:00.012 error: 8 communicators not destroyed during global destruction.
07:12:00
07:12:00 BUILD SUCCESSFUL
07:12:00 Total time: 43 minutes 59 seconds
07:12:00 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -DMARK=broken -Dtestreports.dir=target/reports/broken
07:12:00 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:12:01 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
07:12:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:12:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:12:02
07:12:02 python-integration:
07:12:02 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken
07:12:07 ============================= test session starts ==============================
07:12:07 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
07:12:07 cachedir: .pytest_cache
07:12:07 django: version: 4.2.16, settings: omeroweb.settings (from ini)
07:12:07 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
07:12:07 configfile: pytest.ini
07:12:07 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
07:12:15 collecting ... collected 2061 items / 2025 deselected / 36 selected
07:12:20 test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly FAILED [ 2%]
07:12:37 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] FAILED [ 5%]
07:12:49 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] FAILED [ 8%]
07:12:51 test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory FAILED [ 11%]
07:13:09 test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript FAILED [ 13%]
07:13:14 test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations FAILED [ 16%]
07:13:15 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead FAILED [ 19%]
07:13:19 test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback FAILED [ 22%]
07:13:34 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts FAILED [ 25%]
07:13:37 test/integration/tablestest/test_service.py::TestTables::test2098 FAILED [ 27%]
07:13:37 test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile FAILED [ 30%]
07:13:38 test/integration/tablestest/test_service.py::TestTables::testReadEqual FAILED [ 33%]
07:13:38 test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange FAILED [ 36%]
07:13:44 test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset FAILED [ 38%]
07:13:46 test/integration/test_admin.py::TestAdmin::test9193 FAILED [ 41%]
07:13:50 test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 FAILED [ 44%]
07:13:56 test/integration/test_ishare.py::TestIShare::test1172 FAILED [ 47%]
07:14:00 test/integration/test_itimeline.py::TestITimeline::test1225 FAILED [ 50%]
07:14:03 test/integration/test_permissions.py::TestPermissions::test3136 FAILED [ 52%]
07:14:06 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit FAILED [ 55%]
07:14:09 test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink FAILED [ 58%]
07:14:12 test/integration/test_permissions.py::TestPermissions::testSaveBadLink FAILED [ 61%]
07:14:16 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser FAILED [ 63%]
07:14:19 test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic FAILED [ 66%]
07:14:19 test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession FAILED [ 69%]
07:14:19 test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save FAILED [ 72%]
07:14:25 test/integration/test_rawfilestore.py::TestRFS::testNoWrite FAILED [ 75%]
07:14:28 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile FAILED [ 77%]
07:14:41 test/integration/test_scripts.py::TestScripts::testParseErrorTicket2185 PASSED [ 80%]
07:14:56 test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 FAILED [ 83%]
07:15:00 test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 FAILED [ 86%]
07:15:15 test/integration/test_scripts.py::TestScripts::test3527 FAILED [ 88%]
07:15:22 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx FAILED [ 91%]
07:15:44 test/integration/test_tickets2000.py::TestTickets2000::test1184 FAILED [ 94%]
07:15:57 test/integration/test_tickets4000.py::TestTickets4000::test3138 PASSED [ 97%]
07:16:03 test/integration/test_tickets6000.py::TestTickets6000::test5684 PASSED [100%]
07:16:03 =================================== FAILURES ===================================
07:16:03 __________________________ TestFS.testRenameAdminOnly __________________________
07:16:03 self = <test.integration.clitest.test_fs.TestFS object at 0x7f7a40b4b2e0>
07:16:03 capsys = <_pytest.capture.CaptureFixture object at 0x7f7a0cfd76d0>
07:16:03 @pytest.mark.broken(reason="fs rename is temporarily disabled")
07:16:03 def testRenameAdminOnly(self, capsys):
07:16:03 """Test fs rename is admin-only"""
07:16:03 self.args += ["rename", "Fileset:1"]
07:16:03 with pytest.raises(NonZeroReturnCode):
07:16:03 self.cli.invoke(self.args, strict=True)
07:16:03 out, err = capsys.readouterr()
07:16:03 > assert err.endswith("SecurityViolation: Admins only!\n")
07:16:03 E AssertionError: assert False
07:16:03 E + where False = <built-in method endswith of str object at 0x7f7a0cfc5260>('SecurityViolation: Admins only!\n')
07:16:03 E + where <built-in method endswith of str object at 0x7f7a0cfc5260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:16:03 test/integration/clitest/test_fs.py:118: AssertionError
07:16:03 _________ TestImport.testTargetInDifferentGroup[Dataset-test.fake--d] __________
07:16:03 self = <test.integration.clitest.test_import.TestImport object at 0x7f7a40920940>
07:16:03 container = 'Dataset', filename = 'test.fake', arg = '-d'
07:16:03 tmpdir = local('/tmp/pytest-of-omero/pytest-20/testTargetInDifferentGroup_Dat0')
07:16:03 capfd = <_pytest.capture.CaptureFixture object at 0x7f7a0c9901f0>
07:16:03 @pytest.mark.broken(reason="needs omero.group setting")
07:16:03 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:16:03 def testTargetInDifferentGroup(self, container, filename, arg,
07:16:03 tmpdir, capfd):
07:16:03 new_group = self.new_group(experimenters=[self.user])
07:16:03 self.sf.getAdminService().getEventContext() # Refresh
07:16:03 target = eval("omero.model."+container+"I")()
07:16:03 target.name = rstring('testTargetInDifferentGroup')
07:16:03 target = self.update.saveAndReturnObject(
07:16:03 target, {"omero.group": str(new_group.id.val)})
07:16:03 assert target.details.group.id.val == new_group.id.val
07:16:03 fakefile = tmpdir.join(filename)
07:16:03 fakefile.write('')
07:16:03 self.args += [str(fakefile)]
07:16:03 self.args += [arg, '%s' % target.id.val]
07:16:03 # Invoke CLI import command and retrieve stdout/stderr
07:16:03 > o, e = self.do_import(capfd)
07:16:03 test/integration/clitest/test_import.py:1216:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 test/integration/clitest/test_import.py:150: in do_import
07:16:03 self.cli.invoke(self.args, strict=True)
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:16:03 self.assertRC()
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <omero.cli.CLI object at 0x7f7a00424d90>
07:16:03 def assertRC(self):
07:16:03 if self.rv != 0:
07:16:03 > raise NonZeroReturnCode(self.rv, "assert failed")
07:16:03 E omero.cli.NonZeroReturnCode: assert failed
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:16:03 ----------------------------- Captured stdout call -----------------------------
07:16:03 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:16:03 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:16:03 2024-10-24 08:12:24,802 280 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:16:03 2024-10-24 08:12:24,820 298 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 62d359b4bc191e66a0e75fbc407c2b440d35be57 date: 24 October 2024
07:16:03 2024-10-24 08:12:24,877 355 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:16:03 2024-10-24 08:12:25,431 909 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:16:03 2024-10-24 08:12:25,509 987 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 75ms. (78ms total) [0 unknowns]
07:16:03 2024-10-24 08:12:25,551 1029 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:16:03 2024-10-24 08:12:26,290 1768 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:16:03 2024-10-24 08:12:26,530 2008 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:16:03 2024-10-24 08:12:26,538 2016 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:16:03 2024-10-24 08:12:36,837 12315 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:16:03 2024-10-24 08:12:37,073 12551 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Dataset:1346
07:16:03 2024-10-24 08:12:37,084 12562 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@136c4438
07:16:03 2024-10-24 08:12:37,084 12562 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:16:03 java.lang.RuntimeException: Failed to load target
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:16:03 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:16:03 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 Caused by: omero.SecurityViolation: null
07:16:03 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:16:03 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:16:03 at java.base/java.lang.Class.newInstance(Class.java:584)
07:16:03 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:16:03 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:16:03 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:16:03 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:16:03 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:16:03 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:16:03 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:16:03 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:16:03 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:16:03 ... 7 common frames omitted
07:16:03 2024-10-24 08:12:37,086 12564 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:16:03 ==> Summary
07:16:03 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.248
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.util.Resources:__init__.py:652 Starting
07:16:03 INFO omero.util.Resources:__init__.py:669 Halted
07:16:03 _ TestImport.testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] _
07:16:03 self = <test.integration.clitest.test_import.TestImport object at 0x7f7a40920ac0>
07:16:03 container = 'Screen'
07:16:03 filename = 'SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake'
07:16:03 arg = '-r'
07:16:03 tmpdir = local('/tmp/pytest-of-omero/pytest-20/testTargetInDifferentGroup_Scr0')
07:16:03 capfd = <_pytest.capture.CaptureFixture object at 0x7f7a0c9ab5b0>
07:16:03 @pytest.mark.broken(reason="needs omero.group setting")
07:16:03 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:16:03 def testTargetInDifferentGroup(self, container, filename, arg,
07:16:03 tmpdir, capfd):
07:16:03 new_group = self.new_group(experimenters=[self.user])
07:16:03 self.sf.getAdminService().getEventContext() # Refresh
07:16:03 target = eval("omero.model."+container+"I")()
07:16:03 target.name = rstring('testTargetInDifferentGroup')
07:16:03 target = self.update.saveAndReturnObject(
07:16:03 target, {"omero.group": str(new_group.id.val)})
07:16:03 assert target.details.group.id.val == new_group.id.val
07:16:03 fakefile = tmpdir.join(filename)
07:16:03 fakefile.write('')
07:16:03 self.args += [str(fakefile)]
07:16:03 self.args += [arg, '%s' % target.id.val]
07:16:03 # Invoke CLI import command and retrieve stdout/stderr
07:16:03 > o, e = self.do_import(capfd)
07:16:03 test/integration/clitest/test_import.py:1216:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 test/integration/clitest/test_import.py:150: in do_import
07:16:03 self.cli.invoke(self.args, strict=True)
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:16:03 self.assertRC()
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <omero.cli.CLI object at 0x7f7a00424d90>
07:16:03 def assertRC(self):
07:16:03 if self.rv != 0:
07:16:03 > raise NonZeroReturnCode(self.rv, "assert failed")
07:16:03 E omero.cli.NonZeroReturnCode: assert failed
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:16:03 ----------------------------- Captured stdout call -----------------------------
07:16:03 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:16:03 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:16:03 2024-10-24 08:12:37,896 254 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:16:03 2024-10-24 08:12:37,912 270 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 62d359b4bc191e66a0e75fbc407c2b440d35be57 date: 24 October 2024
07:16:03 2024-10-24 08:12:37,963 321 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:16:03 2024-10-24 08:12:38,266 624 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:16:03 2024-10-24 08:12:38,584 942 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 315ms. (318ms total) [0 unknowns]
07:16:03 2024-10-24 08:12:38,619 977 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:16:03 2024-10-24 08:12:39,049 1407 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:16:03 2024-10-24 08:12:39,282 1640 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:16:03 2024-10-24 08:12:39,289 1647 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:16:03 2024-10-24 08:12:39,289 1647 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:16:03 2024-10-24 08:12:39,289 1647 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:16:03 2024-10-24 08:12:39,289 1647 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:16:03 2024-10-24 08:12:39,290 1648 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:16:03 2024-10-24 08:12:39,290 1648 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:16:03 2024-10-24 08:12:49,366 11724 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:16:03 2024-10-24 08:12:49,615 11973 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Screen:232
07:16:03 2024-10-24 08:12:49,631 11989 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@21e5a652
07:16:03 2024-10-24 08:12:49,631 11989 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:16:03 java.lang.RuntimeException: Failed to load target
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:16:03 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:16:03 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 Caused by: omero.SecurityViolation: null
07:16:03 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:16:03 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:16:03 at java.base/java.lang.Class.newInstance(Class.java:584)
07:16:03 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:16:03 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:16:03 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:16:03 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:16:03 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:16:03 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:16:03 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:16:03 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:16:03 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:16:03 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:16:03 ... 7 common frames omitted
07:16:03 2024-10-24 08:12:49,633 11991 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:16:03 ==> Summary
07:16:03 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.267
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.util.Resources:__init__.py:652 Starting
07:16:03 INFO omero.util.Resources:__init__.py:669 Halted
07:16:03 ________________________ TestHistory.testCreateHistory _________________________
07:16:03 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7f7a404cc130>
07:16:03 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c970a30>
07:16:03 @pytest.mark.broken(ticket="11494")
07:16:03 def testCreateHistory(self, gatewaywrapper):
07:16:03 # Login as user...
07:16:03 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:16:03 userId = gatewaywrapper.gateway.getEventContext().userId
07:16:03 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:16:03 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:16:03 start = int(round(time.time() * 1000)) - 1000
07:16:03 # Create Dataset in 'default' group
07:16:03 update = gatewaywrapper.gateway.getUpdateService()
07:16:03 new_ds = omero.model.DatasetI()
07:16:03 dataset_name = "history_test_%s" % uuid
07:16:03 new_ds.name = rstring(dataset_name)
07:16:03 new_ds = update.saveAndReturnObject(new_ds)
07:16:03 new_ds_Id = new_ds.id.val
07:16:03 # As Admin, create a second group with this user & upload script
07:16:03 gatewaywrapper.loginAsAdmin()
07:16:03 gid = gatewaywrapper.gateway.createGroup(
07:16:03 "history-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:16:03 # login as User
07:16:03 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:16:03 end = int(round(time.time() * 1000)) + 1000
07:16:03 self.searchHistory(gatewaywrapper.gateway, start, end)
07:16:03 # switch user into new group
07:16:03 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:16:03 omero.model.ExperimenterGroupI(gid, False))
07:16:03 assert switched, "Failed to switch into new group"
07:16:03 # Shouldn't be able to access Dataset...
07:16:03 > self.searchHistory(gatewaywrapper.gateway, start, end)
07:16:03 test/integration/gatewaytest/test_multi_group.py:96:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7f7a404cc130>
07:16:03 gateway = <omero.gateway._BlitzGateway object at 0x7f7a0a6829a0>
07:16:03 start = 1729753970253, end = 1729753972398, dtype = 'Dataset'
07:16:03 def searchHistory(self, gateway, start, end, dtype="Dataset"):
07:16:03 tm = gateway.getTimelineService()
07:16:03 count = tm.countByPeriod([dtype], rtime(int(start)),
07:16:03 rtime(int(end)), None, gateway.SERVICE_OPTS)
07:16:03 data = tm.getByPeriod([dtype], rtime(int(start)), rtime(int(end)),
07:16:03 None, True, gateway.SERVICE_OPTS)
07:16:03 logs = tm.getEventLogsByPeriod(rtime(start), rtime(end), None,
07:16:03 gateway.SERVICE_OPTS)
07:16:03 entityType = 'ome.model.containers.%s' % dtype
07:16:03 filteredLogs = [{'id': i.entityId.val, 'action': i.action.val}
07:16:03 for i in logs if i.entityType.val == entityType]
07:16:03 typeCount = count[dtype]
07:16:03 dataCount = len(data[dtype])
07:16:03 logCount = len(filteredLogs)
07:16:03 assert typeCount == dataCount, \
07:16:03 "Period count should match number of objects"
07:16:03 > assert logCount == dataCount, \
07:16:03 "Logs count should match number of objects"
07:16:03 E AssertionError: Logs count should match number of objects
07:16:03 E assert 1 == 0
07:16:03 test/integration/gatewaytest/test_multi_group.py:58: AssertionError
07:16:03 ------------------------------ Captured log setup ------------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=98a47330-3fa8-4ac3-9cbf-cc26e12186af)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=b17acd38-84c6-44b2-95b2-5258b7b48949)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=5515b245-90df-4cc1-9c9d-4d73ec48f267)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=77cde3e0-b738-41c8-a0e9-49463c9e5b32)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=4c991a9f-de40-4c15-90f6-43d0ed3235b2)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=502fdaab-d285-4f9b-af38-aa505f51f31a)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=74b6c69a-6399-4e0e-97c7-963e2af0802a)
07:16:03 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5045a391-3c49-45a9-b761-63ed336f87fbomero.api.IAdmin> lookupExperimenter(('history_test_user',), {})
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:16:03 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:16:03 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: history_test_user
07:16:03 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor631.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupExperimenter(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor631.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupExperimenter(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3372.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3371.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.lookupExperimenter_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:16:03 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No such experimenter: history_test_user
07:16:03 }
07:16:03 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5045a391-3c49-45a9-b761-63ed336f87fbomero.api.IAdmin> lookupGroup(('rw_history',), {})
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:16:03 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:16:03 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_history
07:16:03 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor563.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupGroup(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor563.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupGroup(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor589.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor588.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.lookupGroup_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:16:03 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No such group: rw_history
07:16:03 }
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=2a7be226-a1f2-4431-8f5e-7b2a84350c33)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=4ebfe81c-612c-4d9d-b068-e4233fb32224)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=908d1fd1-06b9-4bca-b5d3-752a12d2ca42)
07:16:03 --------------------------- Captured stderr teardown ---------------------------
07:16:03 **
07:16:03 ---------------------------- Captured log teardown -----------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=d43895cb-589e-4f85-a9c7-ff1ca648a0c4)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=7cef1681-e9ff-421b-ad8e-3770132fa09a)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=a6ecd770-0988-4d19-837a-4a88cc6cadb3)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ___________________________ TestScript.testRunScript ___________________________
07:16:03 self = <test.integration.gatewaytest.test_multi_group.TestScript object at 0x7f7a404d5fa0>
07:16:03 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c84a340>
07:16:03 @pytest.mark.broken(ticket="11610")
07:16:03 def testRunScript(self, gatewaywrapper):
07:16:03 # Login as user...
07:16:03 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:16:03 userId = gatewaywrapper.gateway.getEventContext().userId
07:16:03 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:16:03 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:16:03 # Create Dataset in 'default' group
07:16:03 update = gatewaywrapper.gateway.getUpdateService()
07:16:03 new_ds = omero.model.DatasetI()
07:16:03 dataset_name = "script_test_%s" % uuid
07:16:03 new_ds.name = rstring(dataset_name)
07:16:03 new_ds = update.saveAndReturnObject(new_ds)
07:16:03 new_ds_Id = new_ds.id.val
07:16:03 # As Admin, create a second group with this user & upload script
07:16:03 gatewaywrapper.loginAsAdmin()
07:16:03 gid = gatewaywrapper.gateway.createGroup(
07:16:03 "script-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:16:03 SCRIPT = """if True:
07:16:03 import omero.scripts
07:16:03 import omero.rtypes
07:16:03 client = omero.scripts.client("ticket8573", \
07:16:03 omero.scripts.Long("datasetId"), \
07:16:03 omero.scripts.String("datasetName", out=True))
07:16:03 ec = client.sf.getAdminService().getEventContext()
07:16:03 gid = ec.groupId
07:16:03 qs = client.sf.getQueryService()
07:16:03 ds_Id = client.getInput("datasetId").getValue()
07:16:03 print("Running test...") # generate stdout
07:16:03 try:
07:16:03 dataset = qs.find("Dataset", ds_Id)
07:16:03 ds_Name = dataset.name.val
07:16:03 print(ds_Name)
07:16:03 except Exception:
07:16:03 ds_Name = "Not Found"
07:16:03 client.setOutput("gid", omero.rtypes.rlong(gid))
07:16:03 client.setOutput("datasetName", omero.rtypes.rstring(ds_Name))
07:16:03 """
07:16:03 svc = gatewaywrapper.gateway.getScriptService()
07:16:03 scriptID = svc.uploadOfficialScript(
07:16:03 "/test/ticket8573/%s" % uuid, SCRIPT)
07:16:03 # switch user into new group
07:16:03 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:16:03 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:16:03 omero.model.ExperimenterGroupI(gid, False))
07:16:03 assert switched, "Failed to switch into new group"
07:16:03 # Shouldn't be able to access Dataset...
07:16:03 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:16:03 assert value is None
07:16:03 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup(
07:16:03 str(default_groupId))
07:16:03 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:16:03 assert value is not None
07:16:03 # run script
07:16:03 svc = gatewaywrapper.gateway.getScriptService()
07:16:03 > process = svc.runScript(scriptID, {"datasetId": rlong(new_ds_Id)},
07:16:03 None, gatewaywrapper.gateway.SERVICE_OPTS)
07:16:03 test/integration/gatewaytest/test_multi_group.py:188:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4833: in __call__
07:16:03 return self.handle_exception(e, *args, **kwargs)
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4830: in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 5dc53f01-284c-437d-9b7e-caec06d5f787/93fc0a43-9c40-4dcd-a1cb-35d0024d4a4comero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 scriptID = 5945
07:16:03 inputs = {'datasetId': object #0 (::omero::RLong)
07:16:03 {
07:16:03 _val = 1354
07:16:03 }}
07:16:03 waitSecs = None
07:16:03 _ctx = <ServiceOptsDict: {'omero.client.uuid': '93fc0a43-9c40-4dcd-a1cb-35d0024d4a4c', 'omero.session.uuid': '5dc53f01-284c-437d-9b7e-caec06d5f787', 'omero.group': '3660'}>
07:16:03 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:03 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:03 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 E {
07:16:03 E serverStackTrace =
07:16:03 E serverExceptionClass =
07:16:03 E message = No processor available! [0 response(s)]
07:16:03 E processorCount = 0
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:03 ------------------------------ Captured log setup ------------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=8f99b03c-c1c8-43e8-b70b-2f5adcd87464)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=4a31222b-4ff7-453b-9a7d-d5d52f9880bb)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=b5c5d1a2-185a-4fbd-859b-f2d2ca649429)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=9b390c56-cb0b-4356-a88a-395e4476aef6)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=a1b96777-00e8-4dcc-8f2d-5a928d1aa2fc)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=2e8539a0-9873-4561-a746-46cc53b5601d)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=3fefa7db-be61-4b8c-bc87-1c590331370b)
07:16:03 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5f326e87-9143-4773-bb48-c3b6ca8b5c16omero.api.IAdmin> lookupExperimenter(('script_test_user',), {})
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:16:03 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:16:03 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: script_test_user
07:16:03 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor631.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupExperimenter(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor631.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupExperimenter(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3372.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3371.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.lookupExperimenter_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:16:03 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No such experimenter: script_test_user
07:16:03 }
07:16:03 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5f326e87-9143-4773-bb48-c3b6ca8b5c16omero.api.IAdmin> lookupGroup(('rw_script',), {})
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:16:03 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:16:03 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_script
07:16:03 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor563.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupGroup(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor563.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.lookupGroup(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor589.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor588.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.lookupGroup_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:16:03 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No such group: rw_script
07:16:03 }
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=65a18050-5f8f-4537-92bc-e799d39c5547)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=12330792-083f-425c-93e9-b943119e99b2)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=5dc53f01-284c-437d-9b7e-caec06d5f787)
07:16:03 WARNING omero.gateway:__init__.py:4810 NoProcessorAvailable on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <93fc0a43-9c40-4dcd-a1cb-35d0024d4a4comero.api.IScript> runScript((5945, {'datasetId': object #0 (::omero::RLong)
07:16:03 {
07:16:03 _val = 1354
07:16:03 }}, None, <ServiceOptsDict: {'omero.client.uuid': '93fc0a43-9c40-4dcd-a1cb-35d0024d4a4c', 'omero.session.uuid': '5dc53f01-284c-437d-9b7e-caec06d5f787', 'omero.group': '3660'}>), {})
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:03 return self.f(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 935, in runScript
07:16:03 return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:03 omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 {
07:16:03 serverStackTrace =
07:16:03 serverExceptionClass =
07:16:03 message = No processor available! [0 response(s)]
07:16:03 processorCount = 0
07:16:03 }
07:16:03 --------------------------- Captured stderr teardown ---------------------------
07:16:03 **
07:16:03 ---------------------------- Captured log teardown -----------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=5f4247a9-6d67-4c93-847a-74bd9530cb2a)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=8817ea2c-602b-4e6c-a160-b1f1b036314d)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=7d6ab483-eb1c-42d5-87f2-96e3d47439c7)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ___________________ TestPerformance.testListFileAnnotations ____________________
07:16:03 self = <test.integration.gatewaytest.test_performance.TestPerformance object at 0x7f7a404dd6a0>
07:16:03 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c86feb0>
07:16:03 @pytest.mark.broken(ticket="11494")
07:16:03 def testListFileAnnotations(self, gatewaywrapper):
07:16:03 """
07:16:03 testListFileAnnotations: test speed of getObjects('FileAnnotation') vv
07:16:03 listFileAnnotations()
07:16:03 """
07:16:03 gatewaywrapper.loginAsAuthor()
07:16:03 updateService = gatewaywrapper.gateway.getUpdateService()
07:16:03 def createFileAnnotation(name, ns):
07:16:03 originalFile = omero.model.OriginalFileI()
07:16:03 originalFile.setName(rstring(name))
07:16:03 originalFile.setPath(rstring(name))
07:16:03 originalFile.setSize(rlong(0))
07:16:03 originalFile.setHash(rstring("Foo"))
07:16:03 originalFile = updateService.saveAndReturnObject(originalFile)
07:16:03 fa = omero.model.FileAnnotationI()
07:16:03 fa.setFile(originalFile)
07:16:03 fa.setNs(rstring(ns))
07:16:03 fa = updateService.saveAndReturnObject(fa)
07:16:03 return fa.id.val
07:16:03 ns = "omero.gatewaytest.PerformanceTest.testListFileAnnotations"
07:16:03 fileCount = 250
07:16:03 fileAnnIds = [createFileAnnotation("testListFileAnnotations%s" % i,
07:16:03 ns) for i in range(fileCount)]
07:16:03 # test speed of listFileAnnotations
07:16:03 startTime = time.time()
07:16:03 fileCount = 0
07:16:03 fileAnns = gatewaywrapper.gateway.listFileAnnotations(toInclude=[ns])
07:16:03 for fa in fileAnns:
07:16:03 fa.getFileName()
07:16:03 fileCount += 1
07:16:03 t1 = time.time() - startTime
07:16:03 print("listFileAnnotations for %d files = %s secs" % (fileCount, t1))
07:16:03 # Typically 1.4 secs
07:16:03 # test speed of getOjbects("Annotation") - lazy loading file names
07:16:03 startTime = time.time()
07:16:03 fileCount = 0
07:16:03 fileAnns = gatewaywrapper.gateway.getObjects(
07:16:03 "FileAnnotation", attributes={'ns': ns})
07:16:03 for fa in fileAnns:
07:16:03 fa.getFileName()
07:16:03 fileCount += 1
07:16:03 t2 = time.time() - startTime
07:16:03 print("getObjects, lazy loading file names for %d files = %s secs"
07:16:03 % (fileCount, t2)) # Typically 2.8 secs
07:16:03 # test speed of getOjbects("Annotation") - NO loading file names
07:16:03 startTime = time.time()
07:16:03 fileCount = 0
07:16:03 fileAnns = gatewaywrapper.gateway.getObjects(
07:16:03 "FileAnnotation", attributes={'ns': ns})
07:16:03 for fa in fileAnns:
07:16:03 fa.getId()
07:16:03 fileCount += 1
07:16:03 t3 = time.time() - startTime
07:16:03 print("getObjects, NO file names for %d files = %s secs"
07:16:03 % (fileCount, t3)) # Typically 0.4 secs
07:16:03 > assert t1 < t2, "Blitz listFileAnnotations() should be faster " \
07:16:03 "than getObjects('FileAnnotation')"
07:16:03 E AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:16:03 E assert 0.3212752342224121 < 0.16168785095214844
07:16:03 test/integration/gatewaytest/test_performance.py:91: AssertionError
07:16:03 ------------------------------ Captured log setup ------------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=404e6440-3a07-4469-8b04-b6460ee21443)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=b63f6848-ede2-4bc6-b227-3155aa7ae572)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=a6a17da0-a37f-4ac2-b2e1-7f1e9ea652ad)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=8293dbfb-c51f-414b-b96e-5225ef0a3217)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=e6c7a033-2df8-4819-842f-bd6191e8e0bf)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=9f2394fb-dcd0-405c-841e-08aacf0177ff)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ----------------------------- Captured stdout call -----------------------------
07:16:03 listFileAnnotations for 250 files = 0.3212752342224121 secs
07:16:03 getObjects, lazy loading file names for 250 files = 0.16168785095214844 secs
07:16:03 getObjects, NO file names for 250 files = 0.15201234817504883 secs
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=15a7cb8d-9491-4f70-b8fa-1118f5ba9e67)
07:16:03 --------------------------- Captured stderr teardown ---------------------------
07:16:03 **
07:16:03 ---------------------------- Captured log teardown -----------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=a8327c10-befa-4902-a47c-56b3c1723446)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=59075075-2813-42f4-93f9-301d94cada2b)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=3f9810e5-d36d-4d01-8e35-74745cc91ba4)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 _________________________ TestUser.testCrossGroupRead __________________________
07:16:03 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f7a404b5fa0>
07:16:03 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c9a12e0>
07:16:03 @pytest.mark.broken(ticket="11545")
07:16:03 def testCrossGroupRead(self, gatewaywrapper):
07:16:03 gatewaywrapper.loginAsAuthor()
07:16:03 p = gatewaywrapper.getTestProject()
07:16:03 assert str(p.getDetails().permissions)[4] == '-'
07:16:03 d = p.getDetails()
07:16:03 g = d.getGroup()
07:16:03 gatewaywrapper.loginAsUser()
07:16:03 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup('-1')
07:16:03 > assert not g.getId() in \
07:16:03 gatewaywrapper.gateway.getEventContext().memberOfGroups
07:16:03 E assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:16:03 E + where 2719 = getId()
07:16:03 E + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:16:03 E + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 9b756529-dc91-4678-b52c-11c942c2d2aa\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:16:03 E + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 9b756529-dc91-4678-b52c-11c942c2d2aa\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:16:03 E + where getEventContext = <omero.gateway._BlitzGateway object at 0x7f7a0a5e3a90>.getEventContext
07:16:03 E + where <omero.gateway._BlitzGateway object at 0x7f7a0a5e3a90> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c9a12e0>.gateway
07:16:03 test/integration/gatewaytest/test_user.py:127: AssertionError
07:16:03 ------------------------------ Captured log setup ------------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=a03f1047-adbd-4607-92a9-e06c17902217)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=1a5adfda-827c-415e-9194-0d0dc132906b)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=98bb1b98-aa7d-42c8-81ec-0783646c5825)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=60f25801-3dc5-4b60-abec-e3081f8163f7)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=1b4ebd6b-d3c1-47c5-ac4d-2338352150ee)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=0e16902f-b999-4013-a672-b3d201f1089a)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=dd421369-3a2b-4f13-8f62-3d38ee852803)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=9b756529-dc91-4678-b52c-11c942c2d2aa)
07:16:03 --------------------------- Captured stderr teardown ---------------------------
07:16:03 **
07:16:03 ---------------------------- Captured log teardown -----------------------------
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=fd26e80f-20dc-4ea4-b5f7-4a385b1c1f86)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=8dae1d58-0a0b-4088-9996-d11e9c0d5a74)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 INFO omero.gateway:__init__.py:2243 created connection (uuid=e0d8ad95-95da-4516-bea2-b13e1b871fe6)
07:16:03 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:03 _________________________ TestPing.testProcessCallback _________________________
07:16:03 self = <test.integration.scriptstest.test_ping.TestPing object at 0x7f7a403f03a0>
07:16:03 @pytest.mark.broken(ticket="11494")
07:16:03 def testProcessCallback(self):
07:16:03 callback = CallbackI()
07:16:03 id = self.client.getCommunicator().stringToIdentity(str(uuid.uuid4()))
07:16:03 cb = self.client.getAdapter().add(callback, id)
07:16:03 cb = omero.grid.ProcessCallbackPrx.uncheckedCast(cb)
07:16:03 p = self._getProcessor()
07:16:03 params = p.params()
07:16:03 assert params.stdoutFormat
07:16:03 process = p.execute(rmap({}))
07:16:03 process.registerCallback(cb)
07:16:03 self.assertSuccess(p, process)
07:16:03 > assert len(callback.finish) > 0
07:16:03 E assert 0 > 0
07:16:03 E + where 0 = len([])
07:16:03 E + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:16:03 test/integration/scriptstest/test_ping.py:214: AssertionError
07:16:03 ______________________ TestScriptRepo.testGetGroupScripts ______________________
07:16:03 self = <test.integration.scriptstest.test_repo.TestScriptRepo object at 0x7f7a403f9e80>
07:16:03 @pytest.mark.broken(ticket="11494")
07:16:03 def testGetGroupScripts(self):
07:16:03 scriptService = self.sf.getScriptService()
07:16:03 client = self.new_client(self.group)
07:16:03 sid = client.sf.getScriptService().uploadScript(
07:16:03 "/test/otheruser.py",
07:16:03 """if True:
07:16:03 import omero, omero.scripts as OS
07:16:03 OS.client("testGetGroupScripts")
07:16:03 """)
07:16:03 myGroupScripts = scriptService.getUserScripts(
07:16:03 [omero.model.ExperimenterGroupI(self.group.id.val, False)])
07:16:03 > assert sid in [x.id.val for x in myGroupScripts]
07:16:03 E assert 6201 in []
07:16:03 test/integration/scriptstest/test_repo.py:78: AssertionError
07:16:03 _____________________________ TestTables.test2098 ______________________________
07:16:03 self = <test_service.TestTables object at 0x7f7a3ba1d310>
07:16:03 @pytest.mark.broken(ticket="11534")
07:16:03 def test2098(self):
07:16:03 """
07:16:03 Creates and downloads an HDF file and checks
07:16:03 that its size and hash match whats in the db
07:16:03 """
07:16:03 grid = self.client.sf.sharedResources()
07:16:03 table = grid.newTable(1, "/test")
07:16:03 assert table
07:16:03 lc = columns.LongColumnI('lc', 'desc', [1])
07:16:03 file = None
07:16:03 try:
07:16:03 file = table.getOriginalFile()
07:16:03 assert file
07:16:03 table.initialize([lc])
07:16:03 table.addData([lc])
07:16:03 finally:
07:16:03 # Not deleting since queried
07:16:03 table.close()
07:16:03 # Reload the file
07:16:03 file = self.client.sf.getQueryService().get(
07:16:03 "OriginalFile", file.id.val)
07:16:03 # Check values
07:16:03 > p = path.path(self.tmpfile())
07:16:03 E AttributeError: type object 'path' has no attribute 'path'
07:16:03 test/integration/tablestest/test_service.py:154: AttributeError
07:16:03 _________________________ TestTables.testReadOnlyFile __________________________
07:16:03 self = <test_service.TestTables object at 0x7f7a3b9aa3a0>
07:16:03 @pytest.mark.broken(ticket="unimplemented")
07:16:03 def testReadOnlyFile(self):
07:16:03 """
07:16:03 Create an HDF5 file on the server, and then mark it read-only.
07:16:03 The server should still allow you to load & read that file.
07:16:03 """
07:16:03 self.testBlankTable() # ofile
07:16:03 > filename = self.unique_dir + "/file.txt"
07:16:03 E AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:16:03 test/integration/tablestest/test_service.py:661: AttributeError
07:16:03 ___________________________ TestTables.testReadEqual ___________________________
07:16:03 self = <test_service.TestTables object at 0x7f7a3b9b5580>
07:16:03 twoColumnFiveRowTable = 473bca6c-804b-4ae8-a75f-67988e0b80b1/Table-16c40e25-786d-4b28-a12e-e5e2b1128d6a -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 @pytest.mark.broken(reason="start=0,end=0 to be reviewed")
07:16:03 def testReadEqual(self, twoColumnFiveRowTable):
07:16:03 # start=0, end=0 has a special contract
07:16:03 data = twoColumnFiveRowTable.read([0], 0, 0)
07:16:03 assert 1 == len(data.columns)
07:16:03 > assert [1] == data.columns[0].values
07:16:03 E assert [1] == [1, 2, 3, 4, 5]
07:16:03 E
07:16:03 E Right contains 4 more items, first extra item: 2
07:16:03 E
07:16:03 E Full diff:
07:16:03 E [
07:16:03 E 1,
07:16:03 E - 2,
07:16:03 E - 3,
07:16:03 E - 4,
07:16:03 E - 5,
07:16:03 E ]
07:16:03 test/integration/tablestest/test_service.py:967: AssertionError
07:16:03 ________________________ TestTables.testReadOutOfRange _________________________
07:16:03 self = <test_service.TestTables object at 0x7f7a3b9b5d00>
07:16:03 twoColumnFiveRowTable = 473bca6c-804b-4ae8-a75f-67988e0b80b1/Table-22b94011-4a69-4b54-b389-94030e173e1d -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 @pytest.mark.broken(reason="need to be reviewed")
07:16:03 def testReadOutOfRange(self, twoColumnFiveRowTable):
07:16:03 # [1, 2, 3, 4, 5][-1:5] = [5]
07:16:03 data = twoColumnFiveRowTable.read([0], -1, 5)
07:16:03 assert 1 == len(data.columns)
07:16:03 assert [5] == data.columns[0].values
07:16:03 > assert [4] == data.rowNumbers
07:16:03 E assert [4] == [-1, 0, 1, 2, 3, 4]
07:16:03 E
07:16:03 E At index 0 diff: 4 != -1
07:16:03 E Right contains 5 more items, first extra item: 0
07:16:03 E
07:16:03 E Full diff:
07:16:03 E [
07:16:03 E - -1,
07:16:03 E - 0,
07:16:03 E - 1,
07:16:03 E - 2,
07:16:03 E - 3,
07:16:03 E 4,
07:16:03 E ]
07:16:03 test/integration/tablestest/test_service.py:1015: AssertionError
07:16:03 ____________________ TestAdmin.testChangePasswordWhenUnset _____________________
07:16:03 self = <test.integration.test_admin.TestAdmin object at 0x7f7a3b9c8850>
07:16:03 @pytest.mark.broken(reason="Empty password disabled by config",
07:16:03 ticket="3201")
07:16:03 def testChangePasswordWhenUnset(self):
07:16:03 """
07:16:03 Shows that it's possible to use the
07:16:03 changePasswordWithOldPassword when
07:16:03 previously no password was set.
07:16:03 See ticket:3201
07:16:03 """
07:16:03 client = self.new_client()
07:16:03 admin = client.sf.getAdminService()
07:16:03 # By setting the user's password to the empty string
07:16:03 # any password will be allowed as the old password
07:16:03 admin.changePassword(rstring(""))
07:16:03 > admin.changePasswordWithOldPassword(rstring("IGNORED"), rstring("ome"))
07:16:03 test/integration/test_admin.py:118:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 64797a2a-2e21-402c-82bc-1fa24e24cc2a/ef79ab4b-3c80-415a-8d92-dfdf99a84758omero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 oldPassword = object #0 (::omero::RString)
07:16:03 {
07:16:03 _val = IGNORED
07:16:03 }
07:16:03 newPassword = object #0 (::omero::RString)
07:16:03 {
07:16:03 _val = ome
07:16:03 }, _ctx = None
07:16:03 def changePasswordWithOldPassword(self, oldPassword, newPassword, _ctx=None):
07:16:03 > return _M_omero.api.IAdmin._op_changePasswordWithOldPassword.invoke(self, ((oldPassword, newPassword), _ctx))
07:16:03 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:16:03 E at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy96.changePasswordWithOldPassword(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy96.changePasswordWithOldPassword(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy97.changePasswordWithOldPassword_async(Unknown Source)
07:16:03 E at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:16:03 E at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:16:03 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 E message = Old password is invalid
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2460: SecurityViolation
07:16:03 ______________________________ TestAdmin.test9193 ______________________________
07:16:03 self = <test.integration.test_admin.TestAdmin object at 0x7f7a3b9cb790>
07:16:03 @pytest.mark.broken(reason="Is this test still valid?", ticket="11465")
07:16:03 def test9193(self):
07:16:03 # Test the removal of removing users
07:16:03 # from a group when the group in question
07:16:03 # may be their last (i.e. default) group
07:16:03 g = self.new_group()
07:16:03 u = self.new_user(group=g)
07:16:03 # Test removing the default group
07:16:03 > self.remove_experimenters(g, [u])
07:16:03 test/integration/test_admin.py:240:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:247: in remove_experimenters
07:16:03 admin.removeGroups(user, [group])
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 0e3eb9dc-a60a-41d0-8750-790a16d403fb/03052890-9845-4570-9952-7276a2e3275eomero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 user = object #0 (::omero::model::Experimenter)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 4726
07:16:03 }
07:16:03 _d...annotationLinksSeq =
07:16:03 {
07:16:03 }
07:16:03 _annotationLinksLoaded = False
07:16:03 _annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 }
07:16:03 groups = [object #0 (::omero::model::ExperimenterGroup)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 3667
07:16:03 }
07:16:03 ...{
07:16:03 }
07:16:03 _annotationLinksLoaded = False
07:16:03 _annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _description = <nil>
07:16:03 }]
07:16:03 _ctx = None
07:16:03 def removeGroups(self, user, groups, _ctx=None):
07:16:03 > return _M_omero.api.IAdmin._op_removeGroups.invoke(self, ((user, groups), _ctx))
07:16:03 E omero.ValidationException: exception ::omero::ValidationException
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:03 E at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor627.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy96.removeGroups(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor627.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy96.removeGroups(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3269.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3268.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy97.removeGroups_async(Unknown Source)
07:16:03 E at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:16:03 E at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:16:03 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.ValidationException
07:16:03 E message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2011: ValidationException
07:16:03 _________________ TestFiles.testUploadDifferentSizeTicket2337 __________________
07:16:03 self = <test.integration.test_files.TestFiles object at 0x7f7a3b960c70>
07:16:03 @pytest.mark.broken(ticket="11610")
07:16:03 def testUploadDifferentSizeTicket2337(self):
07:16:03 uploaded = tmpfile()
07:16:03 ofile = self.client.upload(str(uploaded), type="text/plain")
07:16:03 uploaded.write_lines(["abc", "def"]) # Shorten
07:16:03 > ofile = self.client.upload(
07:16:03 str(uploaded), type="text/plain", ofile=ofile)
07:16:03 test/integration/test_files.py:62:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/clients.py:878: in upload
07:16:03 ofile = up.saveAndReturnObject(ofile)
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = d07b75ee-9e98-4477-a1f4-bcd645352499/9c40b43c-4950-4032-af4f-df3170afb9b3omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 obj = object #0 (::omero::model::OriginalFile)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 6206
07:16:03 }
07:16:03 _d...ksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _name = object #60 (::omero::RString)
07:16:03 {
07:16:03 _val = omerok2jfbmsa.tmp
07:16:03 }
07:16:03 }
07:16:03 _ctx = None
07:16:03 def saveAndReturnObject(self, obj, _ctx=None):
07:16:03 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:03 E omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124677 to ome.model.meta.Event:Id_124676
07:16:03 E You may need to reload the object before continuing.
07:16:03 E at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:16:03 E at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:16:03 E at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:16:03 E at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:16:03 E at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:16:03 E at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:16:03 E at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:16:03 E at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:16:03 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:16:03 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:16:03 E at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:16:03 E at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:16:03 E at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.OptimisticLockException
07:16:03 E message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124677 to ome.model.meta.Event:Id_124676
07:16:03 E You may need to reload the object before continuing.
07:16:03 E backOff = 0
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: OptimisticLockException
07:16:03 _____________________________ TestIShare.test1172 ______________________________
07:16:03 self = <test.integration.test_ishare.TestIShare object at 0x7f7a3b8bc4c0>
07:16:03 @pytest.mark.broken(reason="shares are image-centric for now")
07:16:03 def test1172(self):
07:16:03 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:16:03 share = self.root.sf.getShareService()
07:16:03 query = self.root.sf.getQueryService()
07:16:03 # create user
07:16:03 client_share1, user1 = self.new_client_and_user()
07:16:03 # create dataset with image
07:16:03 ds = self.make_dataset(name="dataset-%s" % uuid, client=self.root)
07:16:03 img = self.new_image(name='test-img in dataset-%s' % uuid)
07:16:03 self.link(ds, img, client=self.root)
07:16:03 items = list()
07:16:03 p = omero.sys.Parameters()
07:16:03 p.map = {"oid": ds.id}
07:16:03 sql = (
07:16:03 "select ds from Dataset ds "
07:16:03 "join fetch ds.details.owner "
07:16:03 "join fetch ds.details.group "
07:16:03 "left outer join fetch ds.imageLinks dil "
07:16:03 "left outer join fetch dil.child i "
07:16:03 "where ds.id=:oid")
07:16:03 items.extend(query.findAllByQuery(sql, p))
07:16:03 assert 1 == len(items)
07:16:03 # members
07:16:03 p.map["eid"] = rlong(user1.id.val)
07:16:03 sql = ("select e from Experimenter e "
07:16:03 "where e.id =:eid order by e.omeName")
07:16:03 ms = query.findAllByQuery(sql, p)
07:16:03 sid = share.createShare(("test-share-%s" % uuid),
07:16:03 rtime(int(time.time() * 1000 + 86400)),
07:16:03 items, ms, [], True)
07:16:03 # USER RETRIEVAL
07:16:03 # login as user1
07:16:03 share1 = client_share1.sf.getShareService()
07:16:03 query1 = client_share1.sf.getQueryService()
07:16:03 content = share1.getContents(sid)
07:16:03 # Content now contains just the dataset with nothing loaded
07:16:03 assert 1 == len(content)
07:16:03 # get shared dataset and image when share is activated
07:16:03 share1.activate(sid)
07:16:03 # retrieve dataset
07:16:03 p = omero.sys.Parameters()
07:16:03 p.map = {"ids": rlist([ds.id])}
07:16:03 sql = (
07:16:03 "select ds from Dataset ds "
07:16:03 "join fetch ds.details.owner "
07:16:03 "join fetch ds.details.group "
07:16:03 "left outer join fetch ds.imageLinks dil "
07:16:03 "left outer join fetch dil.child i "
07:16:03 "where ds.id in (:ids) order by ds.name")
07:16:03 try:
07:16:03 res1 = query1.findAllByQuery(sql, p)
07:16:03 assert False, "This should throw an exception"
07:16:03 except Exception:
07:16:03 pass
07:16:03 # Now we add all the other elements to the share to prevent
07:16:03 # the security violation
07:16:03 #
07:16:03 # Not working imgs = cntar.getImages("Dataset",[ds.id.val], None)
07:16:03 img = query.findByQuery(
07:16:03 "select i from Image i join fetch i.datasetLinks dil "
07:16:03 "join dil.parent d where d.id = %s " % ds.id.val, None)
07:16:03 assert img
07:16:03 share.addObject(sid, img)
07:16:03 share.addObjects(sid, img.copyDatasetLinks())
07:16:03 assert 3 == len(share.getContents(sid))
07:16:03 # And try again to load them
07:16:03 share1.activate(sid)
07:16:03 res1 = query1.findAllByQuery(sql, p)
07:16:03 > assert len(res1) == 1
07:16:03 E assert 0 == 1
07:16:03 E + where 0 = len([])
07:16:03 test/integration/test_ishare.py:381: AssertionError
07:16:03 ____________________________ TestITimeline.test1225 ____________________________
07:16:03 self = <test.integration.test_itimeline.TestITimeline object at 0x7f7a3b8d2ac0>
07:16:03 @pytest.mark.broken(ticket="1225")
07:16:03 def test1225(self):
07:16:03 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:16:03 update = self.root.sf.getUpdateService()
07:16:03 timeline = self.root.sf.getTimelineService()
07:16:03 query = self.root.sf.getQueryService()
07:16:03 # create dataset
07:16:03 to_save = list()
07:16:03 for i in range(0, 10):
07:16:03 to_save.append(self.new_dataset(name="ds-%i-%s" % (i, uuid)))
07:16:03 dss = update.saveAndReturnArray(to_save)
07:16:03 # create tag
07:16:03 for i in range(0, 10):
07:16:03 ds1 = query.get("Dataset", dss[i].id.val)
07:16:03 ann = omero.model.TagAnnotationI()
07:16:03 ann.textValue = rstring('tag-%i-%s' % (i, uuid))
07:16:03 ann.setDescription(rstring('desc-%i-%s' % (i, uuid)))
07:16:03 t_ann = omero.model.DatasetAnnotationLinkI()
07:16:03 t_ann.setParent(ds1)
07:16:03 t_ann.setChild(ann)
07:16:03 update.saveObject(t_ann)
07:16:03 p = omero.sys.Parameters()
07:16:03 p.map = {}
07:16:03 f = omero.sys.Filter()
07:16:03 f.ownerId = rlong(0)
07:16:03 f.limit = rint(10)
07:16:03 p.theFilter = f
07:16:03 M = timeline.getMostRecentAnnotationLinks
07:16:03 tagids = set([e.child.id.val for e in
07:16:03 M(None, ['TagAnnotation'], None, p)])
07:16:03 assert len(tagids) == 10
07:16:03 # And under #9609
07:16:03 tagids = set([e.child.id.val for e in
07:16:03 M(None, ['TagAnnotation'], None, p,
07:16:03 {"omero.group": "-1"})])
07:16:03 > assert len(tagids) == 10
07:16:03 E assert 6 == 10
07:16:03 E + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:16:03 test/integration/test_itimeline.py:244: AssertionError
07:16:03 ___________________________ TestPermissions.test3136 ___________________________
07:16:03 self = <test.integration.test_permissions.TestPermissions object at 0x7f7a197b0a00>
07:16:03 @pytest.mark.broken(ticket="11494")
07:16:03 def test3136(self):
07:16:03 """
07:16:03 Calls to updateGroup were taking too long
07:16:03 because the default value of permissions
07:16:03 returned by the server was triggering a
07:16:03 full changePermissions event.
07:16:03 """
07:16:03 admin = self.root.sf.getAdminService()
07:16:03 group = self.new_group(perms="rw----")
07:16:03 # Change the name but not the permissions
07:16:03 group.name = rstring(self.uuid())
07:16:03 elapsed1, rv = self.timeit(admin.updateGroup, group)
07:16:03 # Now change the name and the permissions
07:16:03 group.name = rstring(self.uuid())
07:16:03 group.details.permissions = omero.model.PermissionsI("rwr---")
07:16:03 elapsed2, rv = self.timeit(admin.updateGroup, group)
07:16:03 # Locally this test always fails as the two times are
07:16:03 # the same order of magnitude. This may be an indication that
07:16:03 # the relevant ticket:
07:16:03 # https://trac.openmicroscopy.org/ome/ticket/3136
07:16:03 # is still valid. Does the ticket need re-opening
07:16:03 # or does the test condition need relaxing?
07:16:03 > assert elapsed1 < (0.1 * elapsed2), \
07:16:03 "elapsed1=%s, elapsed2=%s" % (elapsed1, elapsed2)
07:16:03 E AssertionError: elapsed1=0.03419137001037598, elapsed2=0.01781940460205078
07:16:03 E assert 0.03419137001037598 < (0.1 * 0.01781940460205078)
07:16:03 test/integration/test_permissions.py:488: AssertionError
07:16:03 __________________ TestPermissions.testSaveWithNegOneExplicit __________________
07:16:03 self = <test.integration.test_permissions.TestPermissions object at 0x7f7a1973b100>
07:16:03 @pytest.mark.broken(ticket="11374")
07:16:03 def testSaveWithNegOneExplicit(self):
07:16:03 # Get a user and services
07:16:03 client, user = self.new_client_and_user()
07:16:03 # Create a new object with an explicit group
07:16:03 admin = client.sf.getAdminService()
07:16:03 ec = admin.getEventContext()
07:16:03 grp = omero.model.ExperimenterGroupI(ec.groupId, False)
07:16:03 tag = omero.model.TagAnnotationI()
07:16:03 tag.details.group = grp
07:16:03 # Now try to save it in the -1 context
07:16:03 update = client.sf.getUpdateService()
07:16:03 all_context = {"omero.group": "-1"}
07:16:03 > update.saveAndReturnObject(tag, all_context)
07:16:03 test/integration/test_permissions.py:586:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = c4ae7add-91bd-41f8-81e8-c73cb3cc9fb5/9659cfad-c197-4483-99ce-c967234fa61bomero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 obj = object #0 (::omero::model::TagAnnotation)
07:16:03 {
07:16:03 _id = <nil>
07:16:03 _details = object #1 (::omero::model::Details)
07:16:03 {
07:16:03 ...nksSeq =
07:16:03 {
07:16:03 }
07:16:03 _annotationLinksLoaded = True
07:16:03 _annotationLinksCountPerOwner = {}
07:16:03 _textValue = <nil>
07:16:03 }
07:16:03 _ctx = {'omero.group': '-1'}
07:16:03 def saveAndReturnObject(self, obj, _ctx=None):
07:16:03 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:03 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:03 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:03 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:03 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:16:03 ____________________ TestPermissions.testSaveWithNegBadLink ____________________
07:16:03 self = <test.integration.test_permissions.TestPermissions object at 0x7f7a197b0af0>
07:16:03 @pytest.mark.broken(ticket="11374")
07:16:03 def testSaveWithNegBadLink(self): # ticket:8194
07:16:03 # Get a user and services
07:16:03 client, user = self.new_client_and_user()
07:16:03 admin = client.sf.getAdminService()
07:16:03 group1 = admin.getGroup(admin.getEventContext().groupId)
07:16:03 group2 = self.new_group(experimenters=[user])
07:16:03 for x in (group1, group2):
07:16:03 x.unload()
07:16:03 admin.getEventContext() # Refresh
07:16:03 # Create a new object with a bad link
07:16:03 image = self.new_image()
07:16:03 image.details.group = group1
07:16:03 tag = omero.model.TagAnnotationI()
07:16:03 tag.details.group = group2
07:16:03 link = image.linkAnnotation(tag)
07:16:03 link.details.group = group2
07:16:03 # Now try to save it in the -1 context
07:16:03 update = client.sf.getUpdateService()
07:16:03 all_context = {"omero.group": "-1"}
07:16:03 # Bad links should be detected and
07:16:03 # a security violation raised.
07:16:03 with pytest.raises(omero.GroupSecurityViolation):
07:16:03 > update.saveAndReturnObject(image, all_context)
07:16:03 test/integration/test_permissions.py:635:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = a57b0b50-8d9c-41c8-9c35-bff42ea83138/1c288436-cc49-4604-9bbe-cafc6daed01eomero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 obj = object #0 (::omero::model::Image)
07:16:03 {
07:16:03 _id = <nil>
07:16:03 _details = object #1 (::omero::model::Details)
07:16:03 {
07:16:03 _...bb6100-4aab-4b18-bc2d-b9dbf2ce12d2
07:16:03 }
07:16:03 _description = object #14 (::omero::RString)
07:16:03 {
07:16:03 _val =
07:16:03 }
07:16:03 }
07:16:03 _ctx = {'omero.group': '-1'}
07:16:03 def saveAndReturnObject(self, obj, _ctx=None):
07:16:03 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:03 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:03 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:03 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:03 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:16:03 _______________________ TestPermissions.testSaveBadLink ________________________
07:16:03 self = <test.integration.test_permissions.TestPermissions object at 0x7f7a197a16d0>
07:16:03 @pytest.mark.broken(ticket="11375")
07:16:03 def testSaveBadLink(self):
07:16:03 # Get a user and services
07:16:03 client, user = self.new_client_and_user()
07:16:03 admin = client.sf.getAdminService()
07:16:03 group1 = admin.getGroup(admin.getEventContext().groupId)
07:16:03 group2 = self.new_group(experimenters=[user])
07:16:03 for x in (group1, group2):
07:16:03 x.unload()
07:16:03 admin.getEventContext() # Refresh
07:16:03 # Create a new object with a bad link
07:16:03 image = self.new_image()
07:16:03 image.details.group = group1
07:16:03 tag = omero.model.TagAnnotationI()
07:16:03 tag.details.group = group2
07:16:03 link = image.linkAnnotation(tag)
07:16:03 link.details.group = group2
07:16:03 # Now try to save it
07:16:03 update = client.sf.getUpdateService()
07:16:03 # Bad links should be detected and
07:16:03 # a security violation raised.
07:16:03 with pytest.raises(omero.GroupSecurityViolation):
07:16:03 > update.saveAndReturnObject(image)
07:16:03 test/integration/test_permissions.py:664:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 2954c7cd-6edf-4fdc-afbf-2c148f070228/b03756b4-2c51-4a20-909d-50b2d7477d58omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 obj = object #0 (::omero::model::Image)
07:16:03 {
07:16:03 _id = <nil>
07:16:03 _details = object #1 (::omero::model::Details)
07:16:03 {
07:16:03 _...5d1f37-7d75-41dd-8fae-ef642b461aa0
07:16:03 }
07:16:03 _description = object #14 (::omero::RString)
07:16:03 {
07:16:03 _val =
07:16:03 }
07:16:03 }
07:16:03 _ctx = None
07:16:03 def saveAndReturnObject(self, obj, _ctx=None):
07:16:03 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:03 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:03 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:16:03 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:03 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:03 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:03 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:03 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:03 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:03 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:03 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:03 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 E at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:16:03 E at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:16:03 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:16:03 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:03 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 E message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: SecurityViolation
07:16:03 ______ TestPermissions.testUseOfRawFileBeanScriptReadCorrectGroupAndUser _______
07:16:03 self = <test.integration.test_permissions.TestPermissions object at 0x7f7a1973eac0>
07:16:03 @pytest.mark.broken(ticket="11539")
07:16:03 def testUseOfRawFileBeanScriptReadCorrectGroupAndUser(self):
07:16:03 > self.assertValidScript(lambda v: {
07:16:03 'omero.group': str(v.details.group.id.val),
07:16:03 'omero.user': str(v.details.owner.id.val)
07:16:03 })
07:16:03 test/integration/test_permissions.py:831:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 test/integration/test_permissions.py:813: in assertValidScript
07:16:03 store.setFileId(script.id.val, ctx)
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 0427e68d-3256-48b1-a35c-d872b24ee0e2/d1f4ca97-56e3-45d5-9fca-3d2656e1ca4domero.api.RawFileStore -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 fileId = 1
07:16:03 _ctx = {'omero.client.uuid': '158203bf-98d9-43e1-94cd-3b07935f302d', 'omero.group': '1', 'omero.session.uuid': '0427e68d-3256-48b1-a35c-d872b24ee0e2', 'omero.user': '0'}
07:16:03 def setFileId(self, fileId, _ctx=None):
07:16:03 > return _M_omero.api.RawFileStore._op_setFileId.invoke(self, ((fileId, ), _ctx))
07:16:03 E Ice.UnknownException: exception ::Ice::UnknownException
07:16:03 E {
07:16:03 E unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:16:03 E at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:16:03 E at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:16:03 E at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:16:03 E at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 E at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 E at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:16:03 E at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:16:03 E at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:16:03 E at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:16:03 E at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:16:03 E at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_RawFileStore_ice.py:200: UnknownException
07:16:03 _________________________ TestRFS.testTicket1961Basic __________________________
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fd400>
07:16:03 @pytest.mark.broken(ticket="11534")
07:16:03 def testTicket1961Basic(self):
07:16:03 ofile = self.file()
07:16:03 rfs = self.client.sf.createRawFileStore()
07:16:03 rfs.setFileId(ofile.id.val)
07:16:03 rfs.write([0, 1, 2, 3], 0, 4)
07:16:03 rfs.close()
07:16:03 > self.check_file(ofile)
07:16:03 test/integration/test_rawfilestore.py:49:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fd400>
07:16:03 ofile = object #0 (::omero::model::OriginalFile)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 6207
07:16:03 }
07:16:03 _d...annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _name = object #26 (::omero::RString)
07:16:03 {
07:16:03 _val = test
07:16:03 }
07:16:03 }
07:16:03 client = <omero.clients.BaseClient object at 0x7f7a07e51250>
07:16:03 def check_file(self, ofile, client=None):
07:16:03 if client is None:
07:16:03 client = self.client
07:16:03 query = client.sf.getQueryService()
07:16:03 ofile = query.get("OriginalFile", ofile.id.val)
07:16:03 assert ofile.size.val != -1
07:16:03 > assert ofile.hash.val != ""
07:16:03 E AssertionError: assert '' != ''
07:16:03 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059632\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 test/integration/test_rawfilestore.py:40: AssertionError
07:16:03 ____________________ TestRFS.testTicket1961WithKillSession _____________________
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fd7c0>
07:16:03 @pytest.mark.broken(ticket="11534")
07:16:03 def testTicket1961WithKillSession(self):
07:16:03 ofile = self.file()
07:16:03 grp = self.ctx.groupName
07:16:03 session = self.client.sf.getSessionService().createUserSession(
07:16:03 1 * 1000, 10000, grp)
07:16:03 properties = self.client.getPropertyMap()
07:16:03 c = omero.client(properties)
07:16:03 s = c.joinSession(session.uuid.val)
07:16:03 rfs = s.createRawFileStore()
07:16:03 rfs.setFileId(ofile.id.val)
07:16:03 rfs.write([0, 1, 2, 3], 0, 4)
07:16:03 c.killSession()
07:16:03 > self.check_file(ofile)
07:16:03 test/integration/test_rawfilestore.py:67:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fd7c0>
07:16:03 ofile = object #0 (::omero::model::OriginalFile)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 6208
07:16:03 }
07:16:03 _d...annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _name = object #26 (::omero::RString)
07:16:03 {
07:16:03 _val = test
07:16:03 }
07:16:03 }
07:16:03 client = <omero.clients.BaseClient object at 0x7f7a07e51250>
07:16:03 def check_file(self, ofile, client=None):
07:16:03 if client is None:
07:16:03 client = self.client
07:16:03 query = client.sf.getQueryService()
07:16:03 ofile = query.get("OriginalFile", ofile.id.val)
07:16:03 assert ofile.size.val != -1
07:16:03 > assert ofile.hash.val != ""
07:16:03 E AssertionError: assert '' != ''
07:16:03 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059714\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 test/integration/test_rawfilestore.py:40: AssertionError
07:16:03 __________________________ TestRFS.testTicket2161Save __________________________
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fdb80>
07:16:03 @pytest.mark.broken(ticket="11534")
07:16:03 def testTicket2161Save(self):
07:16:03 ofile = self.file()
07:16:03 rfs = self.client.sf.createRawFileStore()
07:16:03 rfs.setFileId(ofile.id.val)
07:16:03 rfs.write([0, 1, 2, 3], 0, 4)
07:16:03 ofile = rfs.save()
07:16:03 > self.check_file(ofile)
07:16:03 test/integration/test_rawfilestore.py:76:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fdb80>
07:16:03 ofile = object #0 (::omero::model::OriginalFile)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 6209
07:16:03 }
07:16:03 _d...annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _name = object #26 (::omero::RString)
07:16:03 {
07:16:03 _val = test
07:16:03 }
07:16:03 }
07:16:03 client = <omero.clients.BaseClient object at 0x7f7a07e51250>
07:16:03 def check_file(self, ofile, client=None):
07:16:03 if client is None:
07:16:03 client = self.client
07:16:03 query = client.sf.getQueryService()
07:16:03 ofile = query.get("OriginalFile", ofile.id.val)
07:16:03 assert ofile.size.val != -1
07:16:03 > assert ofile.hash.val != ""
07:16:03 E AssertionError: assert '' != ''
07:16:03 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059760\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 test/integration/test_rawfilestore.py:40: AssertionError
07:16:03 _____________________________ TestRFS.testNoWrite ______________________________
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fdf40>
07:16:03 @pytest.mark.broken(ticket="11534")
07:16:03 def testNoWrite(self):
07:16:03 group = self.new_group(perms="rwr---")
07:16:03 client1 = self.new_client(group=group)
07:16:03 client2 = self.new_client(group=group)
07:16:03 ofile = self.file(client=client1)
07:16:03 rfs = client1.sf.createRawFileStore()
07:16:03 rfs.setFileId(ofile.id.val)
07:16:03 rfs.write(b"0123", 0, 4)
07:16:03 rfs.close()
07:16:03 > self.check_file(ofile, client=client1)
07:16:03 test/integration/test_rawfilestore.py:94:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f7a196fdf40>
07:16:03 ofile = object #0 (::omero::model::OriginalFile)
07:16:03 {
07:16:03 _id = object #1 (::omero::RLong)
07:16:03 {
07:16:03 _val = 6210
07:16:03 }
07:16:03 _d...annotationLinksCountPerOwner =
07:16:03 {
07:16:03 }
07:16:03 _name = object #26 (::omero::RString)
07:16:03 {
07:16:03 _val = test
07:16:03 }
07:16:03 }
07:16:03 client = <omero.clients.BaseClient object at 0x7f7a0f3a3460>
07:16:03 def check_file(self, ofile, client=None):
07:16:03 if client is None:
07:16:03 client = self.client
07:16:03 query = client.sf.getQueryService()
07:16:03 ofile = query.get("OriginalFile", ofile.id.val)
07:16:03 assert ofile.size.val != -1
07:16:03 > assert ofile.hash.val != ""
07:16:03 E AssertionError: assert '' != ''
07:16:03 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754065593\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 test/integration/test_rawfilestore.py:40: AssertionError
07:16:03 __________________ TestRepoRawFileStore.testFailedWriteNoFile __________________
07:16:03 self = <test.integration.test_reporawfilestore.TestRepoRawFileStore object at 0x7f7a19724400>
07:16:03 @pytest.mark.broken(ticket="11610")
07:16:03 def testFailedWriteNoFile(self):
07:16:03 # Without a single write, no file is produced
07:16:03 rfs = self.repoPrx.file(self.repo_filename, "rw") # create empty file
07:16:03 rfs.close()
07:16:03 rfs = self.repoPrx.file(self.repo_filename, "r")
07:16:03 with pytest.raises(omero.ResourceError):
07:16:03 > rfs.size()
07:16:03 E Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:16:03 test/integration/test_reporawfilestore.py:68: Failed
07:16:03 ______________________ TestScripts.testAutoFillTicket2326 ______________________
07:16:03 self = <test.integration.test_scripts.TestScripts object at 0x7f7a19691af0>
07:16:03 @pytest.mark.broken(ticket="11539")
07:16:03 def testAutoFillTicket2326(self):
07:16:03 SCRIPT = """if True:
07:16:03 import omero.scripts
07:16:03 import omero.rtypes
07:16:03 client = omero.scripts.client(
07:16:03 "ticket2326", omero.scripts.Long("width", optional=True))
07:16:03 width = client.getInput("width")
07:16:03 print(width)
07:16:03 client.setOutput(
07:16:03 "noWidthKey",
07:16:03 omero.rtypes.rbool("width" not in client.getInputKeys()))
07:16:03 client.setOutput("widthIsNull", omero.rtypes.rbool(width is None))
07:16:03 """
07:16:03 impl = omero.processor.usermode_processor(self.client)
07:16:03 svc = self.client.sf.getScriptService()
07:16:03 try:
07:16:03 scriptID = svc.uploadScript("/test/testAutoFillTicket2326", SCRIPT)
07:16:03 > process = svc.runScript(scriptID, {}, None)
07:16:03 test/integration/test_scripts.py:378:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = b436a087-6105-440c-b1a9-a841e3186003/c8dc2414-6967-46e6-b946-25e3b022bdb1omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 scriptID = 6215, inputs = {}, waitSecs = None, _ctx = None
07:16:03 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:03 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:03 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 E {
07:16:03 E serverStackTrace =
07:16:03 E serverExceptionClass =
07:16:03 E message = No processor available! [0 response(s)]
07:16:03 E processorCount = 0
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.util.Resources:__init__.py:652 Starting
07:16:03 INFO omero.processor.ProcessorI:processor.py:814 Registering processor "4?!*d)kT%7RTBV@EBZhS/UsermodeProcessor-44947f69-a654-4e8c-970d-dbccea9497df" -t -e 1.1:tcp -h 127.0.0.1 -p 39915 -t 60000
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:03 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:03 ______________ TestScripts.testParamLoadingPerformanceTicket2285 _______________
07:16:03 self = <test.integration.test_scripts.TestScripts object at 0x7f7a19691eb0>
07:16:03 @pytest.mark.broken(reason="Minor performance failure", ticket="11539")
07:16:03 def testParamLoadingPerformanceTicket2285(self):
07:16:03 root_client = self.new_client(system=True)
07:16:03 svc = root_client.sf.getScriptService()
07:16:03 SCRIPT = """if True:
07:16:03 import omero.model as OM
07:16:03 import omero.rtypes as OR
07:16:03 import omero.scripts as OS
07:16:03 c = OS.client("perf test",
07:16:03 OS.Long("a", min=0, max=5),
07:16:03 OS.String("b", values=("a","b","c")),
07:16:03 OS.List("c").ofType(OM.ImageI))
07:16:03 """
07:16:03 upload_time, scriptID = self.timeit(
07:16:03 svc.uploadOfficialScript, "/test/perf%s.py" % self.uuid(), SCRIPT)
07:16:03 impl = omero.processor.usermode_processor(root_client)
07:16:03 try:
07:16:03 params_time, params = self.timeit(svc.getParams, scriptID)
07:16:03 assert params_time < (upload_time / 10), \
07:16:03 "upload_time(%s) <= 10 * params_time(%s)!" % \
07:16:03 (upload_time, params_time)
07:16:03 assert params_time < 0.1, "params_time(%s) >= 0.01 !" % params_time
07:16:03 > run_time, process = self.timeit(
07:16:03 svc.runScript, scriptID, wrap({"a": int(5)}).val, None)
07:16:03 test/integration/test_scripts.py:417:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:612: in timeit
07:16:03 rv = func(*args, **kwargs)
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = a03e0bf2-270e-4fda-8cbe-d819f2e448db/1c5b6717-5e25-405b-8727-afca2b3ff2f2omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 scriptID = 6216, inputs = {'a': object #0 (::omero::RInt)
07:16:03 {
07:16:03 _val = 5
07:16:03 }}
07:16:03 waitSecs = None, _ctx = None
07:16:03 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:03 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:03 E omero.ValidationException: exception ::omero::ValidationException
07:16:03 E {
07:16:03 E serverStackTrace =
07:16:03 E serverExceptionClass =
07:16:03 E message = Invalid parameters:
07:16:03 E WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
07:16:03 E
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: ValidationException
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4956
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:16:03 handle.close()
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:16:03 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:16:03 omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:16:03 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:16:03 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:03 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor527.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:03 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor558.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:16:03 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:16:03 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:16:03 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 message = User 4740 is not a member of group 3684 and cannot login
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:16:03 INFO omero.util.Resources:__init__.py:652 Starting
07:16:03 INFO omero.processor.ProcessorI:processor.py:814 Registering processor jrHWfd;[]\"]IZu$)Ck1M/UsermodeProcessor-3ae098f0-ddab-4fe3-8067-85c5ba120190 -t -e 1.1:tcp -h 127.0.0.1 -p 39915 -t 60000
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:16:03 handle.close()
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:16:03 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:16:03 omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:16:03 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:16:03 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:03 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor527.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:03 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor558.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:16:03 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:16:03 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:16:03 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 message = User 4740 is not a member of group 3684 and cannot login
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:16:03 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:03 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:03 _____________________________ TestScripts.test3527 _____________________________
07:16:03 self = <test.integration.test_scripts.TestScripts object at 0x7f7a196fd190>
07:16:03 @pytest.mark.broken(ticket="11610")
07:16:03 def test3527(self):
07:16:03 SCRIPT = """if True:
07:16:03 import omero.scripts
07:16:03 import omero.rtypes
07:16:03 client = omero.scripts.client("ticket3527", \
07:16:03 omero.scripts.Long("gid", out=True))
07:16:03 ec = client.sf.getAdminService().getEventContext()
07:16:03 gid = ec.groupId
07:16:03 client.setOutput("gid", omero.rtypes.rlong(gid))
07:16:03 """
07:16:03 impl = omero.processor.usermode_processor(self.client)
07:16:03 svc = self.client.sf.getScriptService()
07:16:03 try:
07:16:03 scriptID = svc.uploadScript("/test/test3527", SCRIPT)
07:16:03 > process = svc.runScript(scriptID, {}, None)
07:16:03 test/integration/test_scripts.py:521:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = b436a087-6105-440c-b1a9-a841e3186003/c8dc2414-6967-46e6-b946-25e3b022bdb1omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 scriptID = 6218, inputs = {}, waitSecs = None, _ctx = None
07:16:03 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:03 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:03 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 E {
07:16:03 E serverStackTrace =
07:16:03 E serverExceptionClass =
07:16:03 E message = No processor available! [0 response(s)]
07:16:03 E processorCount = 0
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:03 ------------------------------ Captured log call -------------------------------
07:16:03 INFO omero.util.Resources:__init__.py:652 Starting
07:16:03 INFO omero.processor.ProcessorI:processor.py:814 Registering processor "4?!*d)kT%7RTBV@EBZhS/UsermodeProcessor-9ce8d19a-594a-4539-a705-5687053b1e34" -t -e 1.1:tcp -h 127.0.0.1 -p 39915 -t 60000
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:03 Traceback (most recent call last):
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:03 file, handle = self.lookup(scriptContext)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:03 file = prx.validateScript(job, self.accepts_list)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:03 return func(*args, **kwargs)
07:16:03 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:03 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:03 omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:03 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:03 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:03 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor597.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:03 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:03 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:03 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = Found wrong number of files: []
07:16:03 }
07:16:03 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:03 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:03 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:03 _______________ TestThumbnailPerms.testPrivate10618RootWithNoCtx _______________
07:16:03 self = <test.integration.test_thumbnailPerms.TestThumbnailPerms object at 0x7f7a196473d0>
07:16:03 @pytest.mark.broken(reason="requires thumbnail work")
07:16:03 def testPrivate10618RootWithNoCtx(self):
07:16:03 """
07:16:03 This would require the server to try omero.group=-1
07:16:03 for the user.
07:16:03 """
07:16:03 group = self.new_group(perms="rw----")
07:16:03 > self.assert10618(group, self.root, True)
07:16:03 test/integration/test_thumbnailPerms.py:256:
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 test/integration/test_thumbnailPerms.py:217: in assert10618
07:16:03 s = tb_prx.getThumbnailByLongestSideSet(rint(16), [pId], *ctx)
07:16:03 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:03 self = 53fad1a3-6864-402b-8e17-7dc9c63f272b/5635ebfa-a5f1-4f55-8bb3-15cf85bac0bbomero.api.ThumbnailStore -t -e 1.1:tcp -h 172.18.0.10 -p 45809 -t 60000
07:16:03 size = object #0 (::omero::RInt)
07:16:03 {
07:16:03 _val = 16
07:16:03 }, pixelsIds = [2901]
07:16:03 _ctx = None
07:16:03 def getThumbnailByLongestSideSet(self, size, pixelsIds, _ctx=None):
07:16:03 > return _M_omero.api.ThumbnailStore._op_getThumbnailByLongestSideSet.invoke(self, ((size, pixelsIds), _ctx))
07:16:03 E omero.ResourceError: exception ::omero::ResourceError
07:16:03 E {
07:16:03 E serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:03 E at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:16:03 E at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:16:03 E at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3879.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:03 E at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3879.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3884.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 E at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:16:03 E at jdk.internal.reflect.GeneratedMethodAccessor3883.invoke(Unknown Source)
07:16:03 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 E at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:16:03 E at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:16:03 E at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:16:03 E at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:16:03 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 E
07:16:03 E serverExceptionClass = ome.conditions.ResourceError
07:16:03 E message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:03 E }
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_ThumbnailStore_ice.py:730: ResourceError
07:16:03 ___________________________ TestTickets2000.test1184 ___________________________
07:16:03 self = <test.integration.test_tickets2000.TestTickets2000 object at 0x7f7a1961a0a0>
07:16:03 @pytest.mark.broken(ticket="11543")
07:16:03 def test1184(self):
07:16:03 uuid = self.uuid()
07:16:03 client = self.new_client(perms="rw----")
07:16:03 query = client.sf.getQueryService()
07:16:03 update = client.sf.getUpdateService()
07:16:03 admin = client.sf.getAdminService()
07:16:03 cont = client.sf.getContainerService()
07:16:03 ds = self.new_dataset(name='test1184-ds-%s' % (uuid))
07:16:03 for i in range(1, 2001):
07:16:03 img = self.new_image(name='img1184-%s' % (uuid))
07:16:03 ds.linkImage(img)
07:16:03 ds = update.saveAndReturnObject(ds)
07:16:03 c = cont.getCollectionCount(
07:16:03 ds.__class__.__name__, ("imageLinks"), [ds.id.val], None)
07:16:03 assert c[ds.id.val] == 2000
07:16:03 page = 1
07:16:03 p = omero.sys.Parameters()
07:16:03 p.map = {}
07:16:03 p.map["eid"] = rlong(admin.getEventContext().userId)
07:16:03 p.map["oid"] = rlong(ds.id.val)
07:16:03 if page is not None:
07:16:03 f = omero.sys.Filter()
07:16:03 f.limit = rint(24)
07:16:03 f.offset = rint((int(page) - 1) * 24)
07:16:03 p.theFilter = f
07:16:03 sql = "select im from Image im join fetch im.details.owner " \
07:16:03 "join fetch im.details.group left outer join fetch " \
07:16:03 "im.datasetLinks dil left outer join fetch dil.parent d " \
07:16:03 "where d.id = :oid and im.details.owner.id=:eid " \
07:16:03 "order by im.id asc"
07:16:03 start = time.time()
07:16:03 res = query.findAllByQuery(sql, p)
07:16:03 assert 24 == len(res)
07:16:03 end = time.time()
07:16:03 elapsed = end - start
07:16:03 > assert elapsed < 3.0, \
07:16:03 "Expected the test to complete in < 3 seconds, took: %f" % elapsed
07:16:03 E AssertionError: Expected the test to complete in < 3 seconds, took: 11.561142
07:16:03 E assert 11.561142206192017 < 3.0
07:16:03 test/integration/test_tickets2000.py:370: AssertionError
07:16:03 =============================== warnings summary ===============================
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:16:03 import sys, string, imp, os, threading, warnings, datetime
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:16:03 warnings.warn(
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:16:03 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:16:03 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:16:03 from pkg_resources import DistributionNotFound, get_distribution
07:16:03 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d]
07:16:03 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r]
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
07:16:03 warnings.warn(
07:16:03 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:16:03 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:16:03 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:03 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:03 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:16:03 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:16:03 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx
07:16:03 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:16:03 converted_plane = byte_swapped_plane.tostring()
07:16:03 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:16:03 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken/junit-results.xml -
07:16:03 =========================== short test summary info ============================
07:16:03 FAILED test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly - AssertionError: assert False
07:16:03 + where False = <built-in method endswith of str object at 0x7f7a0cfc5260>('SecurityViolation: Admins only!\n')
07:16:03 + where <built-in method endswith of str object at 0x7f7a0cfc5260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:16:03 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] - omero.cli.NonZeroReturnCode: assert failed
07:16:03 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] - omero.cli.NonZeroReturnCode: assert failed
07:16:03 FAILED test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory - AssertionError: Logs count should match number of objects
07:16:03 assert 1 == 0
07:16:03 FAILED test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 {
07:16:03 serverStackTrace =
07:16:03 serverExceptionClass =
07:16:03 message = No processor available! [0 response(s)]
07:16:03 processorCount = 0
07:16:03 }
07:16:03 FAILED test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations - AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:16:03 assert 0.3212752342224121 < 0.16168785095214844
07:16:03 FAILED test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead - assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:16:03 + where 2719 = getId()
07:16:03 + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:16:03 + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 9b756529-dc91-4678-b52c-11c942c2d2aa\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:16:03 + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 9b756529-dc91-4678-b52c-11c942c2d2aa\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:16:03 + where getEventContext = <omero.gateway._BlitzGateway object at 0x7f7a0a5e3a90>.getEventContext
07:16:03 + where <omero.gateway._BlitzGateway object at 0x7f7a0a5e3a90> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f7a0c9a12e0>.gateway
07:16:03 FAILED test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback - assert 0 > 0
07:16:03 + where 0 = len([])
07:16:03 + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:16:03 FAILED test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts - assert 6201 in []
07:16:03 FAILED test/integration/tablestest/test_service.py::TestTables::test2098 - AttributeError: type object 'path' has no attribute 'path'
07:16:03 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile - AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:16:03 FAILED test/integration/tablestest/test_service.py::TestTables::testReadEqual - assert [1] == [1, 2, 3, 4, 5]
07:16:03 Right contains 4 more items, first extra item: 2
07:16:03 Full diff:
07:16:03 [
07:16:03 1,
07:16:03 - 2,
07:16:03 - 3,
07:16:03 - 4,
07:16:03 - 5,
07:16:03 ]
07:16:03 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange - assert [4] == [-1, 0, 1, 2, 3, 4]
07:16:03 At index 0 diff: 4 != -1
07:16:03 Right contains 5 more items, first extra item: 0
07:16:03 Full diff:
07:16:03 [
07:16:03 - -1,
07:16:03 - 0,
07:16:03 - 1,
07:16:03 - 2,
07:16:03 - 3,
07:16:03 4,
07:16:03 ]
07:16:03 FAILED test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset - omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:16:03 at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.changePasswordWithOldPassword(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.changePasswordWithOldPassword(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:03 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.changePasswordWithOldPassword_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:16:03 at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 message = Old password is invalid
07:16:03 }
07:16:03 FAILED test/integration/test_admin.py::TestAdmin::test9193 - omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:03 at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor627.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.removeGroups(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor627.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy96.removeGroups(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3269.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3268.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy97.removeGroups_async(Unknown Source)
07:16:03 at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:16:03 at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:16:03 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ValidationException
07:16:03 message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:03 }
07:16:03 FAILED test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 - omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124677 to ome.model.meta.Event:Id_124676
07:16:03 You may need to reload the object before continuing.
07:16:03 at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:16:03 at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:16:03 at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:16:03 at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:16:03 at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:16:03 at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:16:03 at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:16:03 at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:16:03 at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:16:03 at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:16:03 at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:16:03 at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:16:03 at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.OptimisticLockException
07:16:03 message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124677 to ome.model.meta.Event:Id_124676
07:16:03 You may need to reload the object before continuing.
07:16:03 backOff = 0
07:16:03 }
07:16:03 FAILED test/integration/test_ishare.py::TestIShare::test1172 - assert 0 == 1
07:16:03 + where 0 = len([])
07:16:03 FAILED test/integration/test_itimeline.py::TestITimeline::test1225 - assert 6 == 10
07:16:03 + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:16:03 FAILED test/integration/test_permissions.py::TestPermissions::test3136 - AssertionError: elapsed1=0.03419137001037598, elapsed2=0.01781940460205078
07:16:03 assert 0.03419137001037598 < (0.1 * 0.01781940460205078)
07:16:03 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit - omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:03 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:03 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:03 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 }
07:16:03 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink - omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:03 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:03 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:03 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ApiUsageException
07:16:03 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:03 }
07:16:03 FAILED test/integration/test_permissions.py::TestPermissions::testSaveBadLink - omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:03 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:16:03 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:03 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:03 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:03 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:03 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:03 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:03 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:03 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:03 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:16:03 at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:16:03 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:16:03 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:03 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:03 at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:03 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:03 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:03 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:03 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:03 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:03 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:03 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:03 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:03 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:03 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor609.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy101.saveAndReturnObject(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor683.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor682.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy102.saveAndReturnObject_async(Unknown Source)
07:16:03 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:03 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:03 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.SecurityViolation
07:16:03 message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:03 }
07:16:03 FAILED test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser - Ice.UnknownException: exception ::Ice::UnknownException
07:16:03 {
07:16:03 unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:16:03 at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:16:03 at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:16:03 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:16:03 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:03 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:03 at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:16:03 at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:16:03 at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:16:03 at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:16:03 at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:16:03 at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 }
07:16:03 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic - AssertionError: assert '' != ''
07:16:03 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059632\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession - AssertionError: assert '' != ''
07:16:03 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059714\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save - AssertionError: assert '' != ''
07:16:03 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754059760\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 FAILED test/integration/test_rawfilestore.py::TestRFS::testNoWrite - AssertionError: assert '' != ''
07:16:03 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:03 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729754065593\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:03 FAILED test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile - Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:16:03 FAILED test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 {
07:16:03 serverStackTrace =
07:16:03 serverExceptionClass =
07:16:03 message = No processor available! [0 response(s)]
07:16:03 processorCount = 0
07:16:03 }
07:16:03 FAILED test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 - omero.ValidationException: exception ::omero::ValidationException
07:16:03 {
07:16:03 serverStackTrace =
07:16:03 serverExceptionClass =
07:16:03 message = Invalid parameters:
07:16:03 WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
07:16:03 }
07:16:03 FAILED test/integration/test_scripts.py::TestScripts::test3527 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:03 {
07:16:03 serverStackTrace =
07:16:03 serverExceptionClass =
07:16:03 message = No processor available! [0 response(s)]
07:16:03 processorCount = 0
07:16:03 }
07:16:03 FAILED test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx - omero.ResourceError: exception ::omero::ResourceError
07:16:03 {
07:16:03 serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:03 at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:16:03 at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:16:03 at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3879.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:03 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:03 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:03 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3879.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3884.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:03 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:03 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:03 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:03 at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:16:03 at jdk.internal.reflect.GeneratedMethodAccessor3883.invoke(Unknown Source)
07:16:03 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:03 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:03 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:03 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:03 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:03 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:03 at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:16:03 at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:16:03 at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:16:03 at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:16:03 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:03 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:03 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:03 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:03 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:03 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:03 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:03 serverExceptionClass = ome.conditions.ResourceError
07:16:03 message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:03 }
07:16:03 FAILED test/integration/test_tickets2000.py::TestTickets2000::test1184 - AssertionError: Expected the test to complete in < 3 seconds, took: 11.561142
07:16:03 assert 11.561142206192017 < 3.0
07:16:03 ==== 33 failed, 3 passed, 2025 deselected, 12 warnings in 236.22s (0:03:56) ====
07:16:03 !! 10/24/24 08:16:03.777 error: 4 communicators not destroyed during global destruction.
07:16:03 Result: 1
07:16:03
07:16:03 BUILD SUCCESSFUL
07:16:03 Total time: 4 minutes 2 seconds
07:16:03 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/broken broken
07:16:03 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:16:03 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
07:16:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
07:16:04
07:16:04 testng-init:
07:16:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:16:04 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:16:37 07:16:37,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:16:37 07:16:37,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - No custom configurators were discovered as a service.
07:16:37 07:16:37,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:16:37 07:16:37,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:16:37 07:16:37,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:16:37 07:16:37,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:16:37 07:16:37,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:16:37 07:16:37,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:16:37 07:16:37,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:16:37 07:16:37,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:16:37 07:16:37,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:16:37 07:16:37,459 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6d5f4900 - Resource [logback.xml] occurs multiple times on the classpath.
07:16:37 07:16:37,459 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6d5f4900 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:16:37 07:16:37,459 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6d5f4900 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:16:37 07:16:37,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:16:37 07:16:37,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:16:37 07:16:37,820 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:16:37 07:16:37,822 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1e40fbb3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:16:37 07:16:37,822 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1e40fbb3 - Please move "immediateFlush" property into the enclosing appender.
07:16:37 07:16:37,886 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1e40fbb3 - Setting the "immediateFlush" property of the enclosing appender to true
07:16:37 07:16:37,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:16:37 07:16:37,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:16:37 07:16:37,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:16:37 07:16:37,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:16:37 07:16:37,887 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:16:37 07:16:37,888 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:16:37 07:16:37,889 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1b560eb0 - End of configuration.
07:16:37 07:16:37,891 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@9e02f84 - Registering current configuration as safe fallback point
07:16:37 07:16:37,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2416c658 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 434 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:16:37
07:16:37 lifecycle.test-compile:
07:16:37 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_771177678.tmp
07:16:38 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:16:38 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:16:38 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-75ed6e6d79-ice36-ice36 :: integration :: Thu Oct 24 07:16:04 UTC 2024
07:16:38 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:16:38 :: publishing :: omero#OmeroJava-test
07:16:38 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.jar
07:16:38 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-75ed6e6d79-ice36-ice36.xml
07:16:38
07:16:38 broken:
07:16:38 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:16:39 07:16:38,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:16:39 07:16:38,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
07:16:39 07:16:38,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:16:39 07:16:38,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:16:39 07:16:38,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:16:39 07:16:38,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:16:39 07:16:38,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:16:39 07:16:38,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:16:39 07:16:38,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:16:39 07:16:38,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:16:39 07:16:38,791 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:16:39 07:16:38,792 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
07:16:39 07:16:38,792 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:16:39 07:16:38,792 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:16:39 07:16:39,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:16:39 07:16:39,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:16:39 07:16:39,725 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:16:39 07:16:39,726 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:16:39 07:16:39,726 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
07:16:39 07:16:39,756 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:16:39 07:16:39,757 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
07:16:39 07:16:39,758 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
07:16:39 07:16:39,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 969 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:16:45 Oct 24, 2024 7:16:45 AM ome.system.OmeroContext prepareRefresh
07:16:45 INFO: Refreshing ome.system.OmeroContext@9fec931: startup date [Thu Oct 24 07:16:45 UTC 2024]; root of context hierarchy
07:16:45 Oct 24, 2024 7:16:45 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
07:16:45 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
07:18:41 ===============================================
07:18:41 OmeroJava.integration
07:18:41 Total tests run: 43, Passes: 2, Failures: 41, Skips: 0
07:18:41 ===============================================
07:18:42 The tests failed.
07:18:42
07:18:42 BUILD SUCCESSFUL
07:18:42 Total time: 2 minutes 38 seconds
07:18:42 + deactivate
07:18:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:18:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:18:42 + export PATH
07:18:42 + unset _OLD_VIRTUAL_PATH
07:18:42 + '[' -n '' ']'
07:18:42 + '[' -n /bin/bash -o -n '' ']'
07:18:42 + hash -r
07:18:42 + '[' -n '' ']'
07:18:42 + unset VIRTUAL_ENV
07:18:42 + '[' '!' '' = nondestructive ']'
07:18:42 + unset -f deactivate
07:18:42 Recording test results
07:18:43 [Checks API] No suitable checks publisher found.
07:18:43 Build step 'Publish JUnit test result report' changed build result to UNSTABLE
07:18:43 TestNG Reports Processing: START
07:18:43 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
07:18:44 Saving reports...
07:18:45 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/206/testng/testng-results-1.xml'
07:18:45 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/206/testng/testng-results.xml'
07:18:45 0.038625% of tests failed, which exceeded threshold of 0%. Marking build as UNSTABLE
07:18:45 TestNG Reports Processing: FINISH
07:18:45 Finished: UNSTABLE
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