01:03:52 Started by upstream project "Trigger" build number 259
01:03:52 originally caused by:
01:03:52 Started by timer
01:03:52 Running as SYSTEM
01:03:52 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
01:03:52 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins6949255743050701110.sh
01:03:52 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
01:03:52 + python3 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
01:03:56 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:03:56 ++ deactivate nondestructive
01:03:56 ++ '[' -n '' ']'
01:03:56 ++ '[' -n '' ']'
01:03:56 ++ '[' -n /bin/bash -o -n '' ']'
01:03:56 ++ hash -r
01:03:56 ++ '[' -n '' ']'
01:03:56 ++ unset VIRTUAL_ENV
01:03:56 ++ '[' '!' nondestructive = nondestructive ']'
01:03:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:03:56 ++ export VIRTUAL_ENV
01:03:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:56 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:56 ++ export PATH
01:03:56 ++ '[' -n '' ']'
01:03:56 ++ '[' -z '' ']'
01:03:56 ++ _OLD_VIRTUAL_PS1=
01:03:56 ++ PS1='(.venv3) '
01:03:56 ++ export PS1
01:03:56 ++ '[' -n /bin/bash -o -n '' ']'
01:03:56 ++ hash -r
01:03:56 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:03:56 Collecting zeroc-ice==3.6.5
01:03:57 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:04:01 Installing collected packages: zeroc-ice
01:04:02 Successfully installed zeroc-ice-3.6.5
01:04:02 + pip install -U pip future setuptools
01:04:02 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:04:02 Collecting pip
01:04:02 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
01:04:03 Collecting future
01:04:03 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:04:03 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
01:04:03 Collecting setuptools
01:04:03 Using cached setuptools-75.2.0-py3-none-any.whl (1.2 MB)
01:04:03 Installing collected packages: setuptools, pip, future
01:04:03 Attempting uninstall: setuptools
01:04:03 Found existing installation: setuptools 53.0.0
01:04:03 Uninstalling setuptools-53.0.0:
01:04:03 Successfully uninstalled setuptools-53.0.0
01:04:04 Attempting uninstall: pip
01:04:04 Found existing installation: pip 21.2.3
01:04:05 Uninstalling pip-21.2.3:
01:04:05 Successfully uninstalled pip-21.2.3
01:04:06 Successfully installed future-1.0.0 pip-24.2 setuptools-75.2.0
01:04:06 + pip install markdown
01:04:07 Collecting markdown
01:04:07 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:04:07 Collecting importlib-metadata>=4.4 (from markdown)
01:04:07 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:04:07 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:04:07 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
01:04:07 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:04:07 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:04:07 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
01:04:07 Installing collected packages: zipp, importlib-metadata, markdown
01:04:07 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
01:04:07 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
01:04:08 Collecting mox3
01:04:08 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
01:04:08 Collecting pytest
01:04:08 Using cached pytest-8.3.3-py3-none-any.whl.metadata (7.5 kB)
01:04:08 Collecting pytest-django
01:04:08 Using cached pytest_django-4.9.0-py3-none-any.whl.metadata (8.2 kB)
01:04:08 Collecting pytest-xdist
01:04:08 Using cached pytest_xdist-3.6.1-py3-none-any.whl.metadata (4.3 kB)
01:04:08 Collecting pytest-mock
01:04:09 Using cached pytest_mock-3.14.0-py3-none-any.whl.metadata (3.8 kB)
01:04:09 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
01:04:09 Using cached pbr-6.1.0-py2.py3-none-any.whl.metadata (3.4 kB)
01:04:09 Collecting fixtures>=3.0.0 (from mox3)
01:04:09 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
01:04:09 Collecting iniconfig (from pytest)
01:04:09 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
01:04:09 Collecting packaging (from pytest)
01:04:09 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
01:04:09 Collecting pluggy<2,>=1.5 (from pytest)
01:04:09 Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
01:04:09 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
01:04:09 Using cached exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)
01:04:09 Collecting tomli>=1 (from pytest)
01:04:09 Using cached tomli-2.0.2-py3-none-any.whl.metadata (10.0 kB)
01:04:09 Collecting execnet>=2.1 (from pytest-xdist)
01:04:09 Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
01:04:09 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
01:04:09 Using cached pytest-8.3.3-py3-none-any.whl (342 kB)
01:04:09 Using cached pytest_django-4.9.0-py3-none-any.whl (23 kB)
01:04:09 Using cached pytest_xdist-3.6.1-py3-none-any.whl (46 kB)
01:04:09 Using cached pytest_mock-3.14.0-py3-none-any.whl (9.9 kB)
01:04:09 Using cached exceptiongroup-1.2.2-py3-none-any.whl (16 kB)
01:04:09 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
01:04:09 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
01:04:09 Using cached pbr-6.1.0-py2.py3-none-any.whl (108 kB)
01:04:09 Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
01:04:09 Using cached tomli-2.0.2-py3-none-any.whl (13 kB)
01:04:09 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
01:04:09 Using cached packaging-24.1-py3-none-any.whl (53 kB)
01:04:09 Installing collected packages: tomli, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-xdist, pytest-mock, pytest-django, mox3
01:04:10 Successfully installed exceptiongroup-1.2.2 execnet-2.1.1 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.1 pbr-6.1.0 pluggy-1.5.0 pytest-8.3.3 pytest-django-4.9.0 pytest-mock-3.14.0 pytest-xdist-3.6.1 tomli-2.0.2
01:04:10 + pip install tables
01:04:11 Collecting tables
01:04:11 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:04:11 Collecting numpy>=1.19.0 (from tables)
01:04:11 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:04:11 Collecting numexpr>=2.6.2 (from tables)
01:04:11 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
01:04:11 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.1)
01:04:12 Collecting py-cpuinfo (from tables)
01:04:12 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:04:12 Collecting blosc2>=2.3.0 (from tables)
01:04:12 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:04:12 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:04:12 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:04:12 Collecting msgpack (from blosc2>=2.3.0->tables)
01:04:12 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:04:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:04:13 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:04:13 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
01:04:13 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:04:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:04:13 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:04:13 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:04:14 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:04:19 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 py-cpuinfo-9.0.0 tables-3.9.2
01:04:19 + pip install jinja2
01:04:20 Collecting jinja2
01:04:20 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
01:04:20 Collecting MarkupSafe>=2.0 (from jinja2)
01:04:20 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:04:20 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
01:04:20 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:04:20 Installing collected packages: MarkupSafe, jinja2
01:04:20 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.4
01:04:20 + pip install PyYAML
01:04:21 Collecting PyYAML
01:04:21 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:04:21 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:04:21 Installing collected packages: PyYAML
01:04:21 Successfully installed PyYAML-6.0.2
01:04:21 + pip install omero-py omero-web
01:04:22 Collecting omero-py
01:04:22 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:04:22 Collecting omero-web
01:04:22 Using cached omero_web-5.27.2-py3-none-any.whl.metadata (6.4 kB)
01:04:22 Collecting urllib3<2 (from omero-py)
01:04:22 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:04:22 Collecting appdirs (from omero-py)
01:04:22 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:04:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:04:23 Collecting numpy<2 (from omero-py)
01:04:23 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:04:23 Collecting Pillow>=10.0.0 (from omero-py)
01:04:23 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:04:23 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py) (6.0.2)
01:04:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:04:23 Collecting requests (from omero-py)
01:04:23 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:04:23 Collecting portalocker (from omero-py)
01:04:23 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
01:04:23 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
01:04:23 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:04:23 Collecting Django<4.3,>=4.2.3 (from omero-web)
01:04:23 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
01:04:23 Collecting django-pipeline==2.1.0 (from omero-web)
01:04:24 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:04:24 Collecting django-cors-headers==3.7.0 (from omero-web)
01:04:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:04:24 Collecting whitenoise>=5.3.0 (from omero-web)
01:04:24 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
01:04:24 Collecting gunicorn>=19.3 (from omero-web)
01:04:24 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:04:24 Collecting omero-marshal>=0.7.0 (from omero-web)
01:04:24 Using cached omero_marshal-0.9.0-py3-none-any.whl.metadata (2.2 kB)
01:04:24 Collecting pytz (from omero-web)
01:04:24 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:04:24 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web) (24.1)
01:04:24 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web)
01:04:24 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:04:25 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web)
01:04:25 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
01:04:25 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:04:25 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
01:04:25 Collecting idna<4,>=2.5 (from requests->omero-py)
01:04:25 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:04:25 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:04:25 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
01:04:25 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web)
01:04:25 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:04:25 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:04:25 Using cached omero_web-5.27.2-py3-none-any.whl (2.8 MB)
01:04:26 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:04:26 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:04:26 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:04:26 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
01:04:26 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:04:26 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:04:26 Using cached omero_marshal-0.9.0-py3-none-any.whl (88 kB)
01:04:26 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB)
01:04:27 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
01:04:27 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:04:27 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
01:04:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:04:27 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:04:27 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:04:27 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:04:27 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
01:04:27 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
01:04:27 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:04:27 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
01:04:27 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:04:27 Installing collected packages: pytz, django-pipeline, appdirs, whitenoise, urllib3, typing-extensions, sqlparse, portalocker, Pillow, omero-marshal, numpy, idna, gunicorn, charset-normalizer, certifi, requests, concurrent-log-handler, asgiref, omero-py, Django, django-cors-headers, omero-web
01:04:28 Attempting uninstall: numpy
01:04:28 Found existing installation: numpy 2.0.2
01:04:28 Uninstalling numpy-2.0.2:
01:04:28 Successfully uninstalled numpy-2.0.2
01:04:36 Successfully installed Django-4.2.16 Pillow-11.0.0 appdirs-1.4.4 asgiref-3.8.1 certifi-2024.8.30 charset-normalizer-3.4.0 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-pipeline-2.1.0 gunicorn-23.0.0 idna-3.10 numpy-1.26.4 omero-marshal-0.9.0 omero-py-5.19.5 omero-web-5.27.2 portalocker-2.10.1 pytz-2024.2 requests-2.32.3 sqlparse-0.5.1 typing-extensions-4.12.2 urllib3-1.26.20 whitenoise-6.7.0
01:04:37 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins7080161432934754778.sh
01:04:37 + source /home/settings.env
01:04:37 ++ OMERO_DB_HOST=pg
01:04:37 ++ OMERO_DB_USER=postgres
01:04:37 ++ OMERO_DB_PASS=
01:04:37 ++ OMERO_ROOT_PASS=omero
01:04:37 ++ OMERO_DATA_DIR=/OMERO
01:04:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:04:37 + OMERO_DB_NAME=OMERO-test-integration
01:04:37 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:04:37 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
01:04:37 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:04:37 ++ deactivate nondestructive
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -n /bin/bash -o -n '' ']'
01:04:37 ++ hash -r
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ unset VIRTUAL_ENV
01:04:37 ++ '[' '!' nondestructive = nondestructive ']'
01:04:37 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:04:37 ++ export VIRTUAL_ENV
01:04:37 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:37 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:37 ++ export PATH
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -z '' ']'
01:04:37 ++ _OLD_VIRTUAL_PS1=
01:04:37 ++ PS1='(.venv3) '
01:04:37 ++ export PS1
01:04:37 ++ '[' -n /bin/bash -o -n '' ']'
01:04:37 ++ hash -r
01:04:37 + omero admin stop
01:04:39 Waiting on shutdown. Use CTRL-C to exit
01:04:39 .+ deactivate
01:04:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:04:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:49 + export PATH
01:04:49 + unset _OLD_VIRTUAL_PATH
01:04:49 + '[' -n '' ']'
01:04:49 + '[' -n /bin/bash -o -n '' ']'
01:04:49 + hash -r
01:04:49 + '[' -n '' ']'
01:04:49 + unset VIRTUAL_ENV
01:04:49 + '[' '!' '' = nondestructive ']'
01:04:49 + unset -f deactivate
01:04:49 + sleep 5
01:04:54 + dropdb -f -h pg -U postgres OMERO-test-integration
01:04:55 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 Copied 1 artifact from "OMERO-build" build number 215
01:04:56 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 212
01:04:56 Copied 2 artifacts from "OMERO-build-build" build number 223
01:04:56 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins11554703226911584071.sh
01:04:56 + source /home/settings.env
01:04:56 ++ OMERO_DB_HOST=pg
01:04:56 ++ OMERO_DB_USER=postgres
01:04:56 ++ OMERO_DB_PASS=
01:04:56 ++ OMERO_ROOT_PASS=omero
01:04:56 ++ OMERO_DATA_DIR=/OMERO
01:04:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:04:56 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:04:56 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:04:56 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 + OMERO_DB_NAME=OMERO-test-integration
01:04:56 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
01:04:56 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
01:04:56 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:04:56 ++ ls openmicroscopy-5.6.3-513-edc8e2180c-ice36.zip
01:04:56 + ZIP_SRC=openmicroscopy-5.6.3-513-edc8e2180c-ice36.zip
01:04:56 + unzip openmicroscopy-5.6.3-513-edc8e2180c-ice36.zip
01:04:56 Archive: openmicroscopy-5.6.3-513-edc8e2180c-ice36.zip
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.classpath-template
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/Pull_Request_Template.md
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/workflows/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/workflows/docker_build.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/workflows/release.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/workflows/source_build.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.github/workflows/update.yaml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.mailmap
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/.project
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/CMakeLists.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/CONTRIBUTING.md
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/Dockerfile
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/LICENSE.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/README.md
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/SUPPORT.md
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/build.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/build.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/.classpath
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/.project
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/excludebugs.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/global.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/hibernate.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/lifecycle.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/version.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/scripts/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/scripts/parse_version
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/scripts/source-archive.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/README.md
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/plugins/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/plugins/robot.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/robot.template
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/annotation.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/login.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/thumbs.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/tree.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/web/webadmin.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/resources/well_sample_posXY.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/robot_setup.sh
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/annotate_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/create_scenario.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/delete_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/download_options_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/filter_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/forms_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/history_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/post_copy_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/post_cut_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/post_drag_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/post_manage_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/rdef_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/search.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/search_annotation_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/show_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/spw_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/tagging_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/view_image.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/webadmin_create_group_and_user.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/webadmin_login.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tests/ui/testcases/web/webadmin_user_settings.robot
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/CMakeLists.txt
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/FindIce.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/GTest.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/TemplateCmdConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/TemplateConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/TemplateShellConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/Version.cmake
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CMakeLists.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CONTRIBUTORS
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/LICENSE
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/README
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_pred_impl_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_test_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_ex_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_test_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.h
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/README.h
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPop.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPush.h
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/IcePortPop.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/IcePortPush.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ObjectFactory.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ObjectFactory.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ObjectFactoryRegistrar.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/ObjectFactoryRegistrar.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/RTypesI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/RTypesI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/all.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/callbacks.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/callbacks.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/client.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/client.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/clientF.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/clientF.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/conversions.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/conversions.h
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/internal/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/internal/fixes.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/min.h
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/DetailsI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/DetailsI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/ElectricPotentialI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/ElectricPotentialI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/FrequencyI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/FrequencyI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/LengthI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/LengthI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/ObjectFactory.h
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/src/omero/model/PermissionsI.cpp
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/test/omero/
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/drivers.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/integration/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/integration/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/integration/test_dbclient.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/records/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroFS/test/records/first.txt
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/chgrp/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/chgrp/AnnotationMoveTest.java
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01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/chown/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/BrowseFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/DataManagerFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/GatewayTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/GatewayUsageTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/LoadFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/MetadataFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/ROIFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/RawDataFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/SearchFacilityTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/gateway/TablesFacilityTest.java
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/thumbnail/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/thumbnail/SingleFileTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/bin/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/bin/omero
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/bin/setpythonpath.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/bin/winconfig.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/createSession.py
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/load.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/projection_1.py
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/submit.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/examples/upload.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/ice.config
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/ivy.xml
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/manualtests/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/manualtests/README.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/manualtests/populate_roi_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/setup.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/conftest.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/__init__.py
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/cli.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_admin.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_chgrp.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_chown.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_db.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_delete.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_duplicate.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_fs.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_ldap.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_metadata.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_obj.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_pyramids.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_script.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_search.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_tag.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_upload.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/clitest/test_user.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/fstest/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_annotation.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chgrp.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chmod.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chown.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_config_service.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_connection.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_delete.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_fs.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_get_objects.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_helpers.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image_wrapper.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_multi_group.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_performance.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_permissions.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_pixels.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_plate_wrapper.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_rdefs.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_search_objects.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_services.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_ticket10618.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_user.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_wrapper.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/helpers.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns.csv
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_empty.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_fail.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/test_metadata_mapannotations.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/test_populate.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/metadata/test_pydict_text.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.cfg
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.py
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.cfg
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptsharness/test_harness.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/script.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_cli.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_coverage.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_inputs.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_ping.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_rand.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_repo.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_script_utils.py
01:04:56 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_4_4_5.h5.bz2
01:04:56 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_5_3_4.h5.bz2
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/test_populate_metadata.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/test_service.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/tablestest/test_tables.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_admin.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_annotation.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_annotationPermissions.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_chgrp.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_chmod.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_chown.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_client_ctors.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_clientusage.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_cmdcallback.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_counts.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_delete.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_exporter.py
01:04:56 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroPy/test/integration/test_files.py
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01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__10/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__11/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__2/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__3/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__4/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__5/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__6/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__7/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__8/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__9/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__4/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__5/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__6/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__7/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.1__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.2__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.2__0/t/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.3__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.4__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.0__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.1__1/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.2__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__1/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__2/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__3/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:04:57 creating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/schema.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/sql/psql/OMERO5.4__0/views.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/test.xml
01:04:57 inflating: openmicroscopy-5.6.3-513-edc8e2180c-ice36/update_dependencies.sh
01:04:57 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/antlib/resources/gitversion.xml
01:04:57 extracting: openmicroscopy-5.6.3-513-edc8e2180c-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:04:57 + rm -f openmicroscopy-5.6.3-513-edc8e2180c-ice36.zip
01:04:57 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-513-edc8e2180c-ice36 /home/omero/workspace/OMERO-test-integration/src
01:04:57 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:04:57 ++ deactivate nondestructive
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -n /bin/bash -o -n '' ']'
01:04:57 ++ hash -r
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ unset VIRTUAL_ENV
01:04:57 ++ '[' '!' nondestructive = nondestructive ']'
01:04:57 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:04:57 ++ export VIRTUAL_ENV
01:04:57 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:57 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:57 ++ export PATH
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -z '' ']'
01:04:57 ++ _OLD_VIRTUAL_PS1=
01:04:57 ++ PS1='(.venv3) '
01:04:57 ++ export PS1
01:04:57 ++ '[' -n /bin/bash -o -n '' ']'
01:04:57 ++ hash -r
01:04:57 + for x in *.tar.gz
01:04:57 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:04:57 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:04:57 Installing build dependencies: started
01:04:59 Installing build dependencies: finished with status 'done'
01:04:59 Getting requirements to build wheel: started
01:05:00 Getting requirements to build wheel: finished with status 'done'
01:05:00 Preparing metadata (pyproject.toml): started
01:05:00 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:00 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:05:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:05:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:05:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:05:00 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:05:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0)
01:05:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:05:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:05:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:05:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
01:05:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0)
01:05:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:05:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
01:05:00 Building wheels for collected packages: omero-dropbox
01:05:00 Building wheel for omero-dropbox (pyproject.toml): started
01:05:00 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:05:00 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49058 sha256=369e81e52a1cdb5371cab2cf0c9dd41895626fc4dc027c5146fc4cd7bfc41f79
01:05:00 Stored in directory: /home/omero/.cache/pip/wheels/ef/93/2d/d44d5be6e4d9a58eecdbeb6e3385179e95ae7b80719377e781
01:05:00 Successfully built omero-dropbox
01:05:00 Installing collected packages: omero-dropbox
01:05:00 Successfully installed omero-dropbox-5.7.1.dev0
01:05:01 + for x in *.tar.gz
01:05:01 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:05:01 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:05:01 Installing build dependencies: started
01:05:04 Installing build dependencies: finished with status 'done'
01:05:04 Getting requirements to build wheel: started
01:05:04 Getting requirements to build wheel: finished with status 'done'
01:05:04 Preparing metadata (pyproject.toml): started
01:05:04 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:04 Building wheels for collected packages: omero_marshal
01:05:04 Building wheel for omero_marshal (pyproject.toml): started
01:05:04 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:05:04 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=9fddd1b2642db511213ef56f34f9a0aa73033360e822bd1d233323ce654aa441
01:05:04 Stored in directory: /home/omero/.cache/pip/wheels/1a/3a/cd/b39392f5c8ba80a35bab4a0f80f93c7c4729cce6868750f4f3
01:05:04 Successfully built omero_marshal
01:05:05 Installing collected packages: omero_marshal
01:05:05 Attempting uninstall: omero_marshal
01:05:05 Found existing installation: omero-marshal 0.9.0
01:05:05 Uninstalling omero-marshal-0.9.0:
01:05:05 Successfully uninstalled omero-marshal-0.9.0
01:05:05 Successfully installed omero_marshal-0.9.1.dev0
01:05:05 + for x in *.tar.gz
01:05:05 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:05:05 Processing ./omero_py-5.19.6.dev0.tar.gz
01:05:06 Installing build dependencies: started
01:05:07 Installing build dependencies: finished with status 'done'
01:05:07 Getting requirements to build wheel: started
01:05:08 Getting requirements to build wheel: finished with status 'done'
01:05:08 Preparing metadata (pyproject.toml): started
01:05:08 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:05:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:05:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:05:08 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:05:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0)
01:05:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:05:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:05:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:05:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
01:05:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0)
01:05:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:05:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
01:05:08 Building wheels for collected packages: omero-py
01:05:08 Building wheel for omero-py (pyproject.toml): started
01:05:09 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:05:09 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783246 sha256=0706bd30a3a28b69086c1abb3c2888c8f7dd21c5ae2d438b644dd636c456592b
01:05:09 Stored in directory: /home/omero/.cache/pip/wheels/0e/51/53/0205c66cdbe856d4da23e6b9c5d613133b733ef358e57fa643
01:05:09 Successfully built omero-py
01:05:09 Installing collected packages: omero-py
01:05:09 Attempting uninstall: omero-py
01:05:09 Found existing installation: omero-py 5.19.5
01:05:09 Uninstalling omero-py-5.19.5:
01:05:10 Successfully uninstalled omero-py-5.19.5
01:05:12 Successfully installed omero-py-5.19.6.dev0
01:05:12 + for x in *.tar.gz
01:05:12 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
01:05:12 Processing ./omero_scripts-5.8.4.dev0.tar.gz
01:05:12 Installing build dependencies: started
01:05:14 Installing build dependencies: finished with status 'done'
01:05:14 Getting requirements to build wheel: started
01:05:14 Getting requirements to build wheel: finished with status 'done'
01:05:14 Preparing metadata (pyproject.toml): started
01:05:15 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:15 Building wheels for collected packages: omero-scripts
01:05:15 Building wheel for omero-scripts (pyproject.toml): started
01:05:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:05:15 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116645 sha256=1c6d03cb439e80438938c54c2b5975a889f0d48ef2d16f3b7b1aa080302a9604
01:05:15 Stored in directory: /home/omero/.cache/pip/wheels/28/3e/92/6522b883548147569f7375ed3132e6964d3645235d0b7e283f
01:05:15 Successfully built omero-scripts
01:05:15 Installing collected packages: omero-scripts
01:05:15 Successfully installed omero-scripts-5.8.4.dev0
01:05:15 + for x in *.tar.gz
01:05:15 + pip install -U omero_web-5.27.3.dev0.tar.gz
01:05:16 Processing ./omero_web-5.27.3.dev0.tar.gz
01:05:16 Installing build dependencies: started
01:05:18 Installing build dependencies: finished with status 'done'
01:05:18 Getting requirements to build wheel: started
01:05:19 Getting requirements to build wheel: finished with status 'done'
01:05:19 Preparing metadata (pyproject.toml): started
01:05:19 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
01:05:19 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.25)
01:05:19 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (4.2.16)
01:05:19 Requirement already satisfied: django-pipeline==2.1.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.1.0)
01:05:19 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (3.7.0)
01:05:19 Collecting django-csp (from omero-web==5.27.3.dev0)
01:05:19 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:05:19 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (6.7.0)
01:05:19 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (23.0.0)
01:05:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
01:05:19 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (11.0.0)
01:05:19 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
01:05:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
01:05:19 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
01:05:19 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (3.8.1)
01:05:19 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (0.5.1)
01:05:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
01:05:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
01:05:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
01:05:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
01:05:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
01:05:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
01:05:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
01:05:19 Requirement already satisfied: typing-extensions>=4 in ./.venv3/lib/python3.9/site-packages (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (4.12.2)
01:05:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.4.0)
01:05:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
01:05:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
01:05:19 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:05:19 Building wheels for collected packages: omero-web
01:05:19 Building wheel for omero-web (pyproject.toml): started
01:05:20 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:05:20 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766670 sha256=961462097c5b20c44a29864ab8120c7a346b4147fb053bac2c483b64c224323a
01:05:20 Stored in directory: /home/omero/.cache/pip/wheels/f0/b3/64/dc77f8e1a2385b2f8ef248e63a59b8ba8d51c2c928e147e9d6
01:05:21 Successfully built omero-web
01:05:21 Installing collected packages: django-csp, omero-web
01:05:21 Attempting uninstall: omero-web
01:05:21 Found existing installation: omero-web 5.27.2
01:05:21 Uninstalling omero-web-5.27.2:
01:05:21 Successfully uninstalled omero-web-5.27.2
01:05:21 Successfully installed django-csp-3.8 omero-web-5.27.3.dev0
01:05:21 + pip install omero-certificates
01:05:22 Collecting omero-certificates
01:05:22 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:05:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6.dev0)
01:05:22 Collecting distro==1.8.0 (from omero-certificates)
01:05:22 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:05:22 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:05:22 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:05:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:05:22 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:05:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0)
01:05:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:05:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:05:22 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:05:22 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
01:05:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0)
01:05:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:05:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
01:05:22 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:05:22 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:05:22 Installing collected packages: distro, omero-certificates
01:05:22 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:05:22 + for x in omero-cli-duplicate
01:05:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:05:23 Collecting omero-cli-duplicate
01:05:23 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-0i7uqfvg/omero-cli-duplicate_0b00517755334ccc9a10fbbcea5be6c4
01:05:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-0i7uqfvg/omero-cli-duplicate_0b00517755334ccc9a10fbbcea5be6c4
01:05:23 Running command git checkout -b merge_ci --track origin/merge_ci
01:05:24 Switched to a new branch 'merge_ci'
01:05:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:05:24 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 603f441ce6063845fc04d4bd1d2a05a117e8c1f9
01:05:24 Installing build dependencies: started
01:05:26 Installing build dependencies: finished with status 'done'
01:05:26 Getting requirements to build wheel: started
01:05:26 Getting requirements to build wheel: finished with status 'done'
01:05:26 Preparing metadata (pyproject.toml): started
01:05:26 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:26 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6.dev0)
01:05:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:05:26 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:05:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:05:26 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:05:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0)
01:05:26 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:05:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:05:26 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:05:26 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
01:05:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0)
01:05:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:05:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
01:05:26 Building wheels for collected packages: omero-cli-duplicate
01:05:26 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:05:27 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:05:27 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=6c9218f930395e9d9015b6f3dbf55af3997a1858ed01775d58bbb6e10e13c309
01:05:27 Stored in directory: /tmp/pip-ephem-wheel-cache-pmj5ek31/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:05:27 Successfully built omero-cli-duplicate
01:05:27 Installing collected packages: omero-cli-duplicate
01:05:27 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:05:27 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
01:05:27 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
01:05:27 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:05:27 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
01:05:27
01:05:27 check-ivy:
01:05:27 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
01:05:28 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
01:05:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:28 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:28
01:05:28 build-scons:
01:05:28 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
01:05:28
01:05:28 build:
01:05:28 No sub-builds to iterate on
01:05:28 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:29 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:29 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:05:29 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:05:29
01:05:29 tools-init:
01:05:29 no-op
01:05:29
01:05:29 retrieve:
01:05:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:29 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:29 WARNING: An illegal reflective access operation has occurred
01:05:29 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-test-integration/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:05:29 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:05:29 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:05:29 WARNING: All illegal access operations will be denied in a future release
01:05:42
01:05:42 prepare:
01:05:42 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:42
01:05:42 pre-compile:
01:05:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:43 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:44 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:44 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:44
01:05:44 compile:
01:05:44 no-op
01:05:44
01:05:44 package:
01:05:44 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
01:05:44
01:05:44 install:
01:05:44 :: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-513-edc8e2180c-ice36-ice36 :: integration :: Fri Oct 25 01:05:29 UTC 2024
01:05:44 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
01:05:44 :: publishing :: omero#omero_client
01:05:45 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-edc8e2180c-ice36-ice36/omero_client-5.6.3-513-edc8e2180c-ice36-ice36.jar
01:05:45 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-edc8e2180c-ice36-ice36/omero_client-5.6.3-513-edc8e2180c-ice36-ice36.xml
01:05:45 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:45 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:45
01:05:45 retrieve:
01:05:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:45 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:45 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
01:05:45
01:05:45 dist:
01:05:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
01:05:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
01:05:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:05:45 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:05:45 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
01:05:45 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:45 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
01:05:45 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
01:05:45 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:05:45
01:05:45 copy-licenses:
01:05:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
01:05:45 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
01:05:45
01:05:45 copy-history:
01:05:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:45
01:05:45 copy-etc:
01:05:45 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:05:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
01:05:45
01:05:45 copy-sql:
01:05:45 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:49
01:05:49 copy-server:
01:05:49 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:05:49
01:05:49 copy-client:
01:05:49 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
01:05:50 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:05:50
01:05:50 update-version:
01:05:50 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:05:50
01:05:50 create-workdirs:
01:05:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
01:05:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
01:05:50
01:05:50 copy-luts:
01:05:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:05:50 Copying 39 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:05:50
01:05:50 test-compile:
01:05:50 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:05:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:05:51
01:05:51 testng-init:
01:05:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:51 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:54 01:05:54,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:05:54 01:05:54,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - No custom configurators were discovered as a service.
01:05:54 01:05:54,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:05:54 01:05:54,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:05:54 01:05:54,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:05:54 01:05:54,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:05:54 01:05:54,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:05:54 01:05:54,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:05:54 01:05:54,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:05:54 01:05:54,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:05:54 01:05:54,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:05:54 01:05:54,496 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs multiple times on the classpath.
01:05:54 01:05:54,496 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:05:54 01:05:54,496 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@373636f3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:05:54 01:05:54,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:05:54 01:05:54,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:05:54 01:05:54,792 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:05:54 01:05:54,794 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:05:54 01:05:54,794 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - Please move "immediateFlush" property into the enclosing appender.
01:05:54 01:05:54,857 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ca413f6 - Setting the "immediateFlush" property of the enclosing appender to true
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:05:54 01:05:54,858 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:05:54 01:05:54,859 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@66e478c7 - End of configuration.
01:05:54 01:05:54,861 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1a35f99a - Registering current configuration as safe fallback point
01:05:54 01:05:54,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@196ca821 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 366 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:05:54
01:05:54 lifecycle.test-compile:
01:05:54 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:54 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:55 warning: [options] bootstrap class path not set in conjunction with -source 8
01:05:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:56 import omero.grid.RawAccessRequest;
01:05:56 ^
01:05:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:56 import omero.grid.RawAccessRequest;
01:05:56 ^
01:05:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:57 import omero.grid.RawAccessRequest;
01:05:57 ^
01:05:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:57 import omero.model.ImportJob;
01:05:57 ^
01:05:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:05:57 import omero.model.ImportJobI;
01:05:57 ^
01:05:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:05:57 IObject link = (IObject) linkClass.newInstance();
01:05:57 ^
01:05:57 where T is a type-variable:
01:05:57 T extends Object declared in class Class
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:05:58 T copy = (T) obj.getClass().newInstance();
01:05:58 ^
01:05:58 where T is a type-variable:
01:05:58 T extends Object declared in class Class
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:58 RawAccessRequest raw = new RawAccessRequest();
01:05:58 ^
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:58 RawAccessRequest raw = new RawAccessRequest();
01:05:58 ^
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:58 raw.repoUuid = legacy.root().getHash().getValue();
01:05:58 ^
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:58 raw.command = "rm";
01:05:58 ^
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:58 raw.args = Arrays.asList(path);
01:05:58 ^
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:05:58 final IObject link = linkClass.newInstance();
01:05:58 ^
01:05:58 where T is a type-variable:
01:05:58 T extends Object declared in class Class
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:05:58 originalLink.setChild(annotationClass.newInstance());
01:05:58 ^
01:05:58 where T is a type-variable:
01:05:58 T extends Object declared in class Class
01:05:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:05:58 RoiResult r = svc.findByImage(id, new RoiOptions());
01:05:58 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:59 final RawAccessRequest request = new RawAccessRequest();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:59 final RawAccessRequest request = new RawAccessRequest();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:59 request.repoUuid = repo.root().getHash().getValue();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:59 request.command = "exists";
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:59 request.args = Collections.singletonList(dirPath);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:59 final RawAccessRequest request = new RawAccessRequest();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:59 final RawAccessRequest request = new RawAccessRequest();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:59 request.repoUuid = repo.root().getHash().getValue();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:59 request.command = "exists";
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:59 request.args = Collections.singletonList(dirName);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:59 final ImportJob importJob = new ImportJobI();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:05:59 final ImportJob importJob = new ImportJobI();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:05:59 importJob.setImageName(omero.rtypes.rstring(name));
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:05:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:05:59 final String savedName = sent.getImageName().getValue().toString();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:05:59 final String savedDesc = sent.getImageDescription().getValue().toString();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:05:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:05:59 ^
01:05:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:05:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:05:59 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 RoiResult r = svc.findByImage(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:06:00 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:06:00 table = svc.getTable(f.getId().getValue());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 RoiResult r = svc.findByImage(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:06:00 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:06:00 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:06:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:06:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:06:00 svc.getShapeStatsRestricted(
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:06:00 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:06:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:06:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:06:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:06:00 request.typesToIgnore = Collections.singletonList("Annotation");
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:06:00 request.typesToIgnore = Collections.singletonList("Annotation");
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:06:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:06:00 p2.setRelatedTo(p1);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:06:00 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:06:00 pixels1.setRelatedTo(pixels2);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:06:00 Pixels pixels = pixels1.getRelatedTo();
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:06:00 Assert.assertNull(pixels1.getRelatedTo());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:06:00 pixels1.setRelatedTo(pixels2);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:06:00 Pixels pixels = pixels1.getRelatedTo();
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:06:00 Assert.assertNull(pixels1.getRelatedTo());
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:06:00 ^
01:06:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:06:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:06:00 ^
01:06:00 Note: Some input files use unchecked or unsafe operations.
01:06:00 Note: Recompile with -Xlint:unchecked for details.
01:06:00 88 warnings
01:06:00 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_439505480.tmp
01:06:00 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:06:00 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:06:00 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-edc8e2180c-ice36-ice36 :: integration :: Fri Oct 25 01:05:50 UTC 2024
01:06:00 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:06:00 :: publishing :: omero#OmeroJava-test
01:06:00 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.jar
01:06:00 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.xml
01:06:00
01:06:00 BUILD SUCCESSFUL
01:06:00 Total time: 33 seconds
01:06:01 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:01 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:01 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:01 + omero config set omero.db.name OMERO-test-integration
01:06:02 + omero config set omero.db.host pg
01:06:03 + omero config set omero.db.user postgres
01:06:04 + omero config set omero.db.poolsize 50
01:06:05 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
01:06:06 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
01:06:08 + omero config set omero.ports.prefix 1
01:06:09 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
01:06:10 + omero certificates
01:06:11 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:06:12 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
01:06:12 + createdb -h pg -U postgres OMERO-test-integration
01:06:13 + omero db script -f dbsetup.sql '' '' omero
01:06:14 WARNING: Positional arguments are deprecated
01:06:14 Using OMERO5.4 for version
01:06:14 Using 0 for patch
01:06:14 Using password from commandline
01:06:15 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
01:06:15 BEGIN
01:06:15 CREATE FUNCTION
01:06:15 CREATE FUNCTION
01:06:15 assert_db_server_prerequisites
01:06:15 --------------------------------
01:06:15
01:06:15 (1 row)
01:06:15
01:06:15 DROP FUNCTION
01:06:15 DROP FUNCTION
01:06:15 CREATE DOMAIN
01:06:15 CREATE DOMAIN
01:06:15 CREATE DOMAIN
01:06:15 CREATE DOMAIN
01:06:15 CREATE DOMAIN
01:06:15 CREATE TYPE
01:06:15 CREATE TYPE
01:06:15 CREATE TYPE
01:06:15 CREATE TYPE
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01:06:15 CREATE TYPE
01:06:15 CREATE TYPE
01:06:15 CREATE TABLE
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01:06:16 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
01:06:16 ALTER TABLE
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01:06:16 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
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01:06:16 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
01:06:16 ALTER TABLE
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01:06:16 ALTER TABLE
01:06:16 CREATE TABLE
01:06:16 DROP TABLE
01:06:16 CREATE VIEW
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01:06:16 CREATE VIEW
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01:06:16 CREATE VIEW
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01:06:16 CREATE VIEW
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01:06:16 CREATE VIEW
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01:06:16 CREATE VIEW
01:06:16 DROP TABLE
01:06:16 CREATE VIEW
01:06:16 DROP TABLE
01:06:16 CREATE VIEW
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE FUNCTION
01:06:16 CREATE TRIGGER
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:16 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
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01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE FUNCTION
01:06:17 SET CONSTRAINTS
01:06:17 CREATE FUNCTION
01:06:17 CREATE SEQUENCE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE FUNCTION
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE SEQUENCE
01:06:17 INSERT 0 1
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 INSERT 0 1
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
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01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
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01:06:17 INSERT 0 1
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01:06:17 INSERT 0 1
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01:06:17 INSERT 0 1
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01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 UPDATE 1
01:06:17 ALTER TABLE
01:06:17 CREATE FUNCTION
01:06:17 CREATE TABLE
01:06:17 INSERT 0 1
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 CREATE INDEX
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 ALTER TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE TABLE
01:06:17 INSERT 0 1
01:06:17 INSERT 0 1
01:06:17 CREATE TABLE
01:06:17 INSERT 0 1
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE INDEX
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 DROP TABLE
01:06:17 DROP TABLE
01:06:17 DROP TABLE
01:06:17 DROP TABLE
01:06:17 DROP TABLE
01:06:17 CREATE VIEW
01:06:17 CREATE VIEW
01:06:17 CREATE VIEW
01:06:17 CREATE VIEW
01:06:17 CREATE VIEW
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 ALTER TABLE
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TABLE
01:06:17 CREATE INDEX
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE FUNCTION
01:06:17 CREATE FUNCTION
01:06:17 CREATE TRIGGER
01:06:17 CREATE TRIGGER
01:06:17 CREATE INDEX
01:06:17 UPDATE 1
01:06:17 COMMIT
01:06:17 + rm dbsetup.sql
01:06:17 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:06:17 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:06:17 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
01:06:17 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
01:06:17 + for f in $OMERO_PROFILE/blitz/*
01:06:17 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
01:06:17 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
01:06:17 + for f in $OMERO_PROFILE/blitz/*
01:06:17 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
01:06:17 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
01:06:17 + omero config set omero.mail.config true
01:06:18 + omero config set omero.mail.fake true
01:06:19 + omero config set omero.mail.port 2525
01:06:21 + BUILD_ID=DONT_KILL_ME
01:06:21 + omero admin start
01:06:31 No descriptor given. Using etc/grid/default.xml
01:06:54 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
01:06:54 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
01:06:54 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
01:06:54 Waiting on startup. Use CTRL-C to exit
01:06:54 + omero admin waitup
01:06:55 Waiting on startup. Use CTRL-C to exit
01:06:55 + omero admin diagnostics
01:07:02 ERROR:omero.util.UpgradeCheck:HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=5.19.6.dev0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7fe655f0d550>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
01:07:02
01:07:02 ================================================================================
01:07:02 OMERO Diagnostics (admin)
01:07:02 ================================================================================
01:07:02
01:07:02 Commands: java -version 11.0.24 (/usr/bin/java)
01:07:02 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
01:07:02 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:07:02 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:07:02 Commands: psql --version 16.4 (/usr/bin/psql)
01:07:02 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:07:02
01:07:02 Component: OMERO.py 5.19.6.dev0
01:07:02 Component: OMERO.server 5.6.3-513-edc8e2180c-ice36-ice36
01:07:02
01:07:02 Server: icegridnode running
01:07:02 Server: Blitz-0 active (pid = 707191, enabled)
01:07:02 Server: DropBox active (pid = 707233, enabled)
01:07:02 Server: FileServer active (pid = 707217, enabled)
01:07:02 Server: Indexer-0 active (pid = 707213, enabled)
01:07:02 Server: MonitorServer active (pid = 707284, enabled)
01:07:02 Server: OMERO.Glacier2 active (pid = 707238, enabled)
01:07:02 Server: OMERO.IceStorm active (pid = 707246, enabled)
01:07:02 Server: PixelData-0 active (pid = 707240, enabled)
01:07:02 Server: Processor-0 activating (enabled)
01:07:02 Server: Tables-0 activating (enabled)
01:07:03 Server: TestDropBox inactive (enabled)
01:07:03
01:07:03 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
01:07:03 Log files: Blitz-0.log 133.7 KB errors=1 warnings=2
01:07:03 Log files: DropBox.log 1.4 KB
01:07:03 Log files: FileServer.log 114 B
01:07:03 Log files: Indexer-0.log 2.9 KB errors=0 warnings=2
01:07:03 Log files: MonitorServer.log 1.2 KB
01:07:03 Log files: PixelData-0.log 3.7 KB errors=0 warnings=2
01:07:03 Log files: Processor-0.log 592 B
01:07:03 Log files: Tables-0.log 841 B
01:07:03 Log files: TestDropBox.log n/a
01:07:03 Log files: master.err 2.1 KB
01:07:03 Log files: master.out 41.5 KB
01:07:03 Log files: Total size 0.19 MB
01:07:03
01:07:03
01:07:03 Environment:OMERO_HOME=(unset)
01:07:03 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:07:03 Environment:OMERO_NODE=(unset)
01:07:03 Environment:OMERO_MASTER=(unset)
01:07:03 Environment:OMERO_USERDIR=(unset)
01:07:03 Environment:OMERO_TMPDIR=(unset)
01:07:03 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:03 Environment:PYTHONPATH=(unset)
01:07:03 Environment:ICE_HOME=/opt/ice-3.6.5
01:07:03 Environment:LD_LIBRARY_PATH=(unset)
01:07:03 Environment:DYLD_LIBRARY_PATH=(unset)
01:07:03
01:07:03 OMERO SSL port:14064
01:07:03 OMERO TCP port:14063
01:07:03 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
01:07:03 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 485861)
01:07:03
01:07:03 JVM settings: Blitz-${index} -Xmx9600m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:07:03 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:07:03 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:07:03 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:07:03
01:07:03 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 25 October 2024 acd014fd1e7336432e42783dc32370dc8f70166c
01:07:03 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 25 October 2024 acd014fd1e7336432e42783dc32370dc8f70166c
01:07:03 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 25 October 2024 acd014fd1e7336432e42783dc32370dc8f70166c
01:07:03 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 25 October 2024 4d30c2f7ddbd77feb366152447dc37e7ab91d7a7
01:07:03 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
01:07:03 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
01:07:03 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
01:07:03 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
01:07:03 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
01:07:03 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
01:07:03 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
01:07:03 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/207
01:07:03 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/207
01:07:03 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:07:03 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:07:03 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
01:07:03 Running the integration tests with -Dtestng.useDefaultListeners=true
01:07:03 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/integration integration
01:07:03 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:07:03 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
01:07:04 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:07:04
01:07:04 testng-init:
01:07:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:04 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:07 01:07:07,470 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:07:07 01:07:07,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - No custom configurators were discovered as a service.
01:07:07 01:07:07,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:07 01:07:07,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:07 01:07:07,478 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:07:07 01:07:07,478 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:07:07 01:07:07,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:07:07 01:07:07,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:07 01:07:07,481 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:07 01:07:07,482 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:07:07 01:07:07,482 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:07 01:07:07,483 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs multiple times on the classpath.
01:07:07 01:07:07,483 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:07 01:07:07,483 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:07:07 01:07:07,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:07:07 01:07:07,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:07:07 01:07:07,739 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:07:07 01:07:07,741 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:07:07 01:07:07,741 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Please move "immediateFlush" property into the enclosing appender.
01:07:07 01:07:07,805 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Setting the "immediateFlush" property of the enclosing appender to true
01:07:07 01:07:07,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:07:07 01:07:07,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:07:07 01:07:07,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:07:07 01:07:07,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:07:07 01:07:07,806 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:07:07 01:07:07,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:07:07 01:07:07,808 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1e6060f1 - End of configuration.
01:07:07 01:07:07,810 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7e49ded - Registering current configuration as safe fallback point
01:07:07 01:07:07,810 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 329 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:07:07
01:07:07 lifecycle.test-compile:
01:07:07 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_1478797364.tmp
01:07:07 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:07:07 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:07 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-edc8e2180c-ice36-ice36 :: integration :: Fri Oct 25 01:07:03 UTC 2024
01:07:07 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:07:07 :: publishing :: omero#OmeroJava-test
01:07:07 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.jar
01:07:07 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.xml
01:07:08
01:07:08 integration:
01:07:08 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:07:08 01:07:08,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:07:08 01:07:08,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
01:07:08 01:07:08,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:08 01:07:08,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:08 01:07:08,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:07:08 01:07:08,428 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:07:08 01:07:08,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:07:08 01:07:08,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:08 01:07:08,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:08 01:07:08,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:07:08 01:07:08,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:08 01:07:08,431 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
01:07:08 01:07:08,431 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:08 01:07:08,431 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:07:08 01:07:08,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:07:08 01:07:08,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:07:08 01:07:08,665 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:07:08 01:07:08,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:07:08 01:07:08,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
01:07:08 01:07:08,692 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:07:08 01:07:08,693 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:07:08 01:07:08,694 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
01:07:08 01:07:08,695 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
01:07:08 01:07:08,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:07:10 Oct 25, 2024 1:07:10 AM ome.system.OmeroContext prepareRefresh
01:07:10 INFO: Refreshing ome.system.OmeroContext@7f8633ae: startup date [Fri Oct 25 01:07:10 UTC 2024]; root of context hierarchy
01:07:10 Oct 25, 2024 1:07:10 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
01:07:10 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
01:07:27 de9e1ee9-a42a-4cfb-a5bc-e8787cce6dda
01:12:28 2024-10-25 01:12:28,659 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:12:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:28 Caused by: Ice.CommunicatorDestroyedException: null
01:12:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:28 ... 7 common frames omitted
01:12:50 2024-10-25 01:12:50,119 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:12:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:50 Caused by: Ice.CommunicatorDestroyedException: null
01:12:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:50 ... 7 common frames omitted
01:12:55 2024-10-25 01:12:55,467 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:12:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:55 Caused by: Ice.CommunicatorDestroyedException: null
01:12:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:55 ... 7 common frames omitted
01:13:27 2024-10-25 01:13:27,976 ERROR [ ome.formats.importer.ImportLibrary] (sDataset-1) Cannot link to target
01:13:41 2024-10-25 01:13:41,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:13:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:13:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:13:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:13:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:13:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:13:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:13:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:13:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:13:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:13:41 Caused by: Ice.CommunicatorDestroyedException: null
01:13:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:13:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:13:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:13:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:13:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:13:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:13:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:13:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:13:41 ... 7 common frames omitted
01:14:09 2024-10-25 01:14:09,234 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:14:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:14:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:14:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:14:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:14:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:14:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:14:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:14:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:14:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:14:09 Caused by: Ice.CommunicatorDestroyedException: null
01:14:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:14:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:14:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:14:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:14:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:14:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:14:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:14:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:14:09 ... 7 common frames omitted
01:17:35 2024-10-25 01:17:35,154 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:17:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:35 Caused by: Ice.CommunicatorDestroyedException: null
01:17:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:35 ... 7 common frames omitted
01:17:36 2024-10-25 01:17:36,664 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:36 Caused by: Ice.CommunicatorDestroyedException: null
01:17:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:36 ... 7 common frames omitted
01:17:38 2024-10-25 01:17:38,117 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:38 Caused by: Ice.CommunicatorDestroyedException: null
01:17:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:38 ... 7 common frames omitted
01:17:43 2024-10-25 01:17:43,424 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:43 Caused by: Ice.CommunicatorDestroyedException: null
01:17:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:43 ... 7 common frames omitted
01:17:44 2024-10-25 01:17:44,556 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:44 Caused by: Ice.CommunicatorDestroyedException: null
01:17:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:44 ... 7 common frames omitted
01:17:45 2024-10-25 01:17:45,386 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:45 Caused by: Ice.CommunicatorDestroyedException: null
01:17:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:45 ... 7 common frames omitted
01:17:46 2024-10-25 01:17:46,296 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:46 Caused by: Ice.CommunicatorDestroyedException: null
01:17:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:46 ... 7 common frames omitted
01:17:47 2024-10-25 01:17:47,111 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:47 Caused by: Ice.CommunicatorDestroyedException: null
01:17:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:47 ... 7 common frames omitted
01:17:47 2024-10-25 01:17:47,840 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:47 Caused by: Ice.CommunicatorDestroyedException: null
01:17:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:47 ... 7 common frames omitted
01:17:48 2024-10-25 01:17:48,805 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:48 Caused by: Ice.CommunicatorDestroyedException: null
01:17:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:48 ... 7 common frames omitted
01:17:49 2024-10-25 01:17:49,983 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:49 Caused by: Ice.CommunicatorDestroyedException: null
01:17:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:49 ... 7 common frames omitted
01:17:50 2024-10-25 01:17:50,807 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:50 Caused by: Ice.CommunicatorDestroyedException: null
01:17:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:50 ... 7 common frames omitted
01:17:51 2024-10-25 01:17:51,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:51 Caused by: Ice.CommunicatorDestroyedException: null
01:17:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:51 ... 7 common frames omitted
01:17:52 2024-10-25 01:17:52,540 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:52 Caused by: Ice.CommunicatorDestroyedException: null
01:17:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:52 ... 7 common frames omitted
01:17:53 2024-10-25 01:17:53,206 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:53 Caused by: Ice.CommunicatorDestroyedException: null
01:17:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:53 ... 7 common frames omitted
01:17:54 2024-10-25 01:17:54,163 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:54 Caused by: Ice.CommunicatorDestroyedException: null
01:17:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:54 ... 7 common frames omitted
01:17:54 2024-10-25 01:17:54,967 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:54 Caused by: Ice.CommunicatorDestroyedException: null
01:17:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:54 ... 7 common frames omitted
01:17:55 2024-10-25 01:17:55,655 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:55 Caused by: Ice.CommunicatorDestroyedException: null
01:17:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:55 ... 7 common frames omitted
01:17:56 2024-10-25 01:17:56,424 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:17:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:56 Caused by: Ice.CommunicatorDestroyedException: null
01:17:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:56 ... 7 common frames omitted
01:17:57 2024-10-25 01:17:57,192 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:57 Caused by: Ice.CommunicatorDestroyedException: null
01:17:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:57 ... 7 common frames omitted
01:17:57 2024-10-25 01:17:57,965 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:17:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:57 Caused by: Ice.CommunicatorDestroyedException: null
01:17:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:57 ... 7 common frames omitted
01:18:00 2024-10-25 01:18:00,420 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:18:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:00 Caused by: Ice.CommunicatorDestroyedException: null
01:18:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:00 ... 7 common frames omitted
01:18:01 2024-10-25 01:18:01,213 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:01 Caused by: Ice.CommunicatorDestroyedException: null
01:18:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:01 ... 7 common frames omitted
01:18:02 2024-10-25 01:18:02,094 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:18:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:02 Caused by: Ice.CommunicatorDestroyedException: null
01:18:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:02 ... 7 common frames omitted
01:18:02 2024-10-25 01:18:02,940 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:02 Caused by: Ice.CommunicatorDestroyedException: null
01:18:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:02 ... 7 common frames omitted
01:18:03 2024-10-25 01:18:03,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:18:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:03 Caused by: Ice.CommunicatorDestroyedException: null
01:18:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:03 ... 7 common frames omitted
01:18:05 2024-10-25 01:18:05,035 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:05 Caused by: Ice.CommunicatorDestroyedException: null
01:18:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:05 ... 7 common frames omitted
01:18:05 2024-10-25 01:18:05,856 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:18:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:05 Caused by: Ice.CommunicatorDestroyedException: null
01:18:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:05 ... 7 common frames omitted
01:18:06 2024-10-25 01:18:06,872 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:06 Caused by: Ice.CommunicatorDestroyedException: null
01:18:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:06 ... 7 common frames omitted
01:18:07 2024-10-25 01:18:07,818 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:18:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:07 Caused by: Ice.CommunicatorDestroyedException: null
01:18:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:07 ... 7 common frames omitted
01:18:08 2024-10-25 01:18:08,825 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:08 Caused by: Ice.CommunicatorDestroyedException: null
01:18:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:08 ... 7 common frames omitted
01:18:09 2024-10-25 01:18:09,849 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:18:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:09 Caused by: Ice.CommunicatorDestroyedException: null
01:18:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:09 ... 7 common frames omitted
01:18:10 2024-10-25 01:18:10,856 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:10 Caused by: Ice.CommunicatorDestroyedException: null
01:18:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:10 ... 7 common frames omitted
01:18:11 2024-10-25 01:18:11,839 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:18:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:11 Caused by: Ice.CommunicatorDestroyedException: null
01:18:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:11 ... 7 common frames omitted
01:18:12 2024-10-25 01:18:12,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:12 Caused by: Ice.CommunicatorDestroyedException: null
01:18:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:12 ... 7 common frames omitted
01:18:13 2024-10-25 01:18:13,829 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:18:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:13 Caused by: Ice.CommunicatorDestroyedException: null
01:18:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:13 ... 7 common frames omitted
01:18:14 2024-10-25 01:18:14,843 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:14 Caused by: Ice.CommunicatorDestroyedException: null
01:18:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:14 ... 7 common frames omitted
01:18:15 2024-10-25 01:18:15,970 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:18:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:15 Caused by: Ice.CommunicatorDestroyedException: null
01:18:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:15 ... 7 common frames omitted
01:18:17 2024-10-25 01:18:17,438 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:17 Caused by: Ice.CommunicatorDestroyedException: null
01:18:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:17 ... 7 common frames omitted
01:18:21 2024-10-25 01:18:21,384 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:18:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:21 Caused by: Ice.CommunicatorDestroyedException: null
01:18:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:21 ... 7 common frames omitted
01:18:22 2024-10-25 01:18:22,245 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:18:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:22 Caused by: Ice.CommunicatorDestroyedException: null
01:18:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:22 ... 7 common frames omitted
01:18:24 2024-10-25 01:18:24,124 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:18:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:24 Caused by: Ice.CommunicatorDestroyedException: null
01:18:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:24 ... 7 common frames omitted
01:18:25 2024-10-25 01:18:25,690 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:25 Caused by: Ice.CommunicatorDestroyedException: null
01:18:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:25 ... 7 common frames omitted
01:18:26 2024-10-25 01:18:26,708 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:26 Caused by: Ice.CommunicatorDestroyedException: null
01:18:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:26 ... 7 common frames omitted
01:18:27 2024-10-25 01:18:27,957 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:27 Caused by: Ice.CommunicatorDestroyedException: null
01:18:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:27 ... 7 common frames omitted
01:18:28 2024-10-25 01:18:28,502 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:28 Caused by: Ice.CommunicatorDestroyedException: null
01:18:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:28 ... 7 common frames omitted
01:18:31 2024-10-25 01:18:31,953 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:31 Caused by: Ice.CommunicatorDestroyedException: null
01:18:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:31 ... 7 common frames omitted
01:18:33 2024-10-25 01:18:33,513 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:33 Caused by: Ice.CommunicatorDestroyedException: null
01:18:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:33 ... 7 common frames omitted
01:18:36 2024-10-25 01:18:36,437 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:36 Caused by: Ice.CommunicatorDestroyedException: null
01:18:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:36 ... 7 common frames omitted
01:18:37 2024-10-25 01:18:37,637 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:37 Caused by: Ice.CommunicatorDestroyedException: null
01:18:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:37 ... 7 common frames omitted
01:18:38 2024-10-25 01:18:38,977 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:38 Caused by: Ice.CommunicatorDestroyedException: null
01:18:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:38 ... 7 common frames omitted
01:18:42 2024-10-25 01:18:42,407 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:42 Caused by: Ice.CommunicatorDestroyedException: null
01:18:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:42 ... 7 common frames omitted
01:18:46 2024-10-25 01:18:46,643 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:46 Caused by: Ice.CommunicatorDestroyedException: null
01:18:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:46 ... 7 common frames omitted
01:18:47 2024-10-25 01:18:47,457 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:47 Caused by: Ice.CommunicatorDestroyedException: null
01:18:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:47 ... 7 common frames omitted
01:18:48 2024-10-25 01:18:48,184 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:48 Caused by: Ice.CommunicatorDestroyedException: null
01:18:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:48 ... 7 common frames omitted
01:18:49 2024-10-25 01:18:49,586 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:49 Caused by: Ice.CommunicatorDestroyedException: null
01:18:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:49 ... 7 common frames omitted
01:20:30 2024-10-25 01:20:30,901 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:20:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:30 Caused by: Ice.CommunicatorDestroyedException: null
01:20:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:30 ... 7 common frames omitted
01:20:33 2024-10-25 01:20:33,224 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:20:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:33 Caused by: Ice.CommunicatorDestroyedException: null
01:20:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:33 ... 7 common frames omitted
01:20:35 2024-10-25 01:20:35,001 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:20:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:35 Caused by: Ice.CommunicatorDestroyedException: null
01:20:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:35 ... 7 common frames omitted
01:20:36 2024-10-25 01:20:36,905 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:20:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:36 Caused by: Ice.CommunicatorDestroyedException: null
01:20:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:36 ... 7 common frames omitted
01:20:39 2024-10-25 01:20:39,075 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:20:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:39 Caused by: Ice.CommunicatorDestroyedException: null
01:20:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:39 ... 7 common frames omitted
01:20:40 2024-10-25 01:20:40,927 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:20:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:40 Caused by: Ice.CommunicatorDestroyedException: null
01:20:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:40 ... 7 common frames omitted
01:20:42 2024-10-25 01:20:42,674 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:20:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:42 Caused by: Ice.CommunicatorDestroyedException: null
01:20:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:42 ... 7 common frames omitted
01:20:44 2024-10-25 01:20:44,763 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:20:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:44 Caused by: Ice.CommunicatorDestroyedException: null
01:20:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:44 ... 7 common frames omitted
01:24:16 2024-10-25 01:24:16,003 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:24:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:16 Caused by: Ice.CommunicatorDestroyedException: null
01:24:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:16 ... 7 common frames omitted
01:24:16 2024-10-25 01:24:16,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:24:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:16 Caused by: Ice.CommunicatorDestroyedException: null
01:24:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:16 ... 7 common frames omitted
01:24:18 2024-10-25 01:24:18,514 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:24:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:18 Caused by: Ice.CommunicatorDestroyedException: null
01:24:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:18 ... 7 common frames omitted
01:24:19 2024-10-25 01:24:19,858 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:24:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:19 Caused by: Ice.CommunicatorDestroyedException: null
01:24:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:19 ... 7 common frames omitted
01:24:20 2024-10-25 01:24:20,212 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:24:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:20 Caused by: Ice.CommunicatorDestroyedException: null
01:24:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:20 ... 7 common frames omitted
01:24:21 2024-10-25 01:24:21,602 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:24:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:21 Caused by: Ice.CommunicatorDestroyedException: null
01:24:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:21 ... 7 common frames omitted
01:24:23 2024-10-25 01:24:23,308 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:24:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:23 Caused by: Ice.CommunicatorDestroyedException: null
01:24:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:23 ... 7 common frames omitted
01:24:25 2024-10-25 01:24:25,007 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:24:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:25 Caused by: Ice.CommunicatorDestroyedException: null
01:24:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:25 ... 7 common frames omitted
01:24:27 2024-10-25 01:24:27,145 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:24:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:27 Caused by: Ice.CommunicatorDestroyedException: null
01:24:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:27 ... 7 common frames omitted
01:24:28 2024-10-25 01:24:28,560 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:24:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:28 Caused by: Ice.CommunicatorDestroyedException: null
01:24:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:28 ... 7 common frames omitted
01:24:30 2024-10-25 01:24:30,101 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:24:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:30 Caused by: Ice.CommunicatorDestroyedException: null
01:24:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:30 ... 7 common frames omitted
01:24:31 2024-10-25 01:24:31,820 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:24:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:31 Caused by: Ice.CommunicatorDestroyedException: null
01:24:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:31 ... 7 common frames omitted
01:25:16 2024-10-25 01:25:16,574 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:25:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:16 Caused by: Ice.CommunicatorDestroyedException: null
01:25:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:16 ... 7 common frames omitted
01:25:18 2024-10-25 01:25:18,886 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:25:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:18 Caused by: Ice.CommunicatorDestroyedException: null
01:25:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:18 ... 7 common frames omitted
01:25:20 2024-10-25 01:25:20,954 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:25:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:20 Caused by: Ice.CommunicatorDestroyedException: null
01:25:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:20 ... 7 common frames omitted
01:25:23 2024-10-25 01:25:23,183 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:25:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:23 Caused by: Ice.CommunicatorDestroyedException: null
01:25:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:23 ... 7 common frames omitted
01:25:25 2024-10-25 01:25:25,503 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:25:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:25 Caused by: Ice.CommunicatorDestroyedException: null
01:25:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:25 ... 7 common frames omitted
01:25:29 2024-10-25 01:25:29,560 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:25:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:29 Caused by: Ice.CommunicatorDestroyedException: null
01:25:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:29 ... 7 common frames omitted
01:25:33 2024-10-25 01:25:33,172 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:25:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:33 Caused by: Ice.CommunicatorDestroyedException: null
01:25:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:33 ... 7 common frames omitted
01:25:36 2024-10-25 01:25:36,567 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:25:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:36 Caused by: Ice.CommunicatorDestroyedException: null
01:25:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:36 ... 7 common frames omitted
01:25:39 2024-10-25 01:25:39,883 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:25:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:39 Caused by: Ice.CommunicatorDestroyedException: null
01:25:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:39 ... 7 common frames omitted
01:25:42 2024-10-25 01:25:42,691 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:25:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:42 Caused by: Ice.CommunicatorDestroyedException: null
01:25:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:42 ... 7 common frames omitted
01:25:45 2024-10-25 01:25:45,073 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:25:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:45 Caused by: Ice.CommunicatorDestroyedException: null
01:25:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:45 ... 7 common frames omitted
01:25:47 2024-10-25 01:25:47,581 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:25:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:47 Caused by: Ice.CommunicatorDestroyedException: null
01:25:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:47 ... 7 common frames omitted
01:25:49 2024-10-25 01:25:49,955 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:25:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:49 Caused by: Ice.CommunicatorDestroyedException: null
01:25:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:49 ... 7 common frames omitted
01:25:52 2024-10-25 01:25:52,297 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:25:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:52 Caused by: Ice.CommunicatorDestroyedException: null
01:25:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:52 ... 7 common frames omitted
01:25:54 2024-10-25 01:25:54,810 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:25:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:54 Caused by: Ice.CommunicatorDestroyedException: null
01:25:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:54 ... 7 common frames omitted
01:25:57 2024-10-25 01:25:57,619 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:25:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:57 Caused by: Ice.CommunicatorDestroyedException: null
01:25:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:57 ... 7 common frames omitted
01:26:00 2024-10-25 01:26:00,465 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:26:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:00 Caused by: Ice.CommunicatorDestroyedException: null
01:26:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:00 ... 7 common frames omitted
01:26:02 2024-10-25 01:26:02,969 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:26:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:02 Caused by: Ice.CommunicatorDestroyedException: null
01:26:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:02 ... 7 common frames omitted
01:26:05 2024-10-25 01:26:05,397 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:26:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:05 Caused by: Ice.CommunicatorDestroyedException: null
01:26:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:05 ... 7 common frames omitted
01:26:07 2024-10-25 01:26:07,962 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:26:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:07 Caused by: Ice.CommunicatorDestroyedException: null
01:26:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:07 ... 7 common frames omitted
01:26:10 2024-10-25 01:26:10,689 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:26:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:10 Caused by: Ice.CommunicatorDestroyedException: null
01:26:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:10 ... 7 common frames omitted
01:26:14 2024-10-25 01:26:14,580 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:26:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:14 Caused by: Ice.CommunicatorDestroyedException: null
01:26:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:14 ... 7 common frames omitted
01:26:18 2024-10-25 01:26:18,379 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:26:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:18 Caused by: Ice.CommunicatorDestroyedException: null
01:26:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:18 ... 7 common frames omitted
01:26:22 2024-10-25 01:26:22,209 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:26:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:22 Caused by: Ice.CommunicatorDestroyedException: null
01:26:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:22 ... 7 common frames omitted
01:26:26 2024-10-25 01:26:26,278 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:26:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:26 Caused by: Ice.CommunicatorDestroyedException: null
01:26:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:26 ... 7 common frames omitted
01:26:28 2024-10-25 01:26:28,606 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:26:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:28 Caused by: Ice.CommunicatorDestroyedException: null
01:26:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:28 ... 7 common frames omitted
01:26:31 2024-10-25 01:26:31,052 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:26:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:31 Caused by: Ice.CommunicatorDestroyedException: null
01:26:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:31 ... 7 common frames omitted
01:26:33 2024-10-25 01:26:33,843 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:26:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:33 Caused by: Ice.CommunicatorDestroyedException: null
01:26:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:33 ... 7 common frames omitted
01:26:36 2024-10-25 01:26:36,203 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:26:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:36 Caused by: Ice.CommunicatorDestroyedException: null
01:26:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:36 ... 7 common frames omitted
01:26:38 2024-10-25 01:26:38,564 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:26:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:38 Caused by: Ice.CommunicatorDestroyedException: null
01:26:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:38 ... 7 common frames omitted
01:26:41 2024-10-25 01:26:41,186 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:26:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:41 Caused by: Ice.CommunicatorDestroyedException: null
01:26:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:41 ... 7 common frames omitted
01:26:43 2024-10-25 01:26:43,471 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:26:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:43 Caused by: Ice.CommunicatorDestroyedException: null
01:26:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:43 ... 7 common frames omitted
01:26:46 2024-10-25 01:26:46,072 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:26:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:46 Caused by: Ice.CommunicatorDestroyedException: null
01:26:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:46 ... 7 common frames omitted
01:26:48 2024-10-25 01:26:48,691 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:26:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:48 Caused by: Ice.CommunicatorDestroyedException: null
01:26:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:48 ... 7 common frames omitted
01:26:51 2024-10-25 01:26:51,442 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:26:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:51 Caused by: Ice.CommunicatorDestroyedException: null
01:26:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:51 ... 7 common frames omitted
01:26:54 2024-10-25 01:26:54,071 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:26:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:54 Caused by: Ice.CommunicatorDestroyedException: null
01:26:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:54 ... 7 common frames omitted
01:26:56 2024-10-25 01:26:56,578 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:26:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:56 Caused by: Ice.CommunicatorDestroyedException: null
01:26:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:56 ... 7 common frames omitted
01:27:00 2024-10-25 01:27:00,760 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:27:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:00 Caused by: Ice.CommunicatorDestroyedException: null
01:27:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:00 ... 7 common frames omitted
01:27:04 2024-10-25 01:27:04,546 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:27:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:04 Caused by: Ice.CommunicatorDestroyedException: null
01:27:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:04 ... 7 common frames omitted
01:27:08 2024-10-25 01:27:08,639 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:27:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:08 Caused by: Ice.CommunicatorDestroyedException: null
01:27:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:08 ... 7 common frames omitted
01:27:13 2024-10-25 01:27:13,057 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:27:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:13 Caused by: Ice.CommunicatorDestroyedException: null
01:27:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:13 ... 7 common frames omitted
01:27:15 2024-10-25 01:27:15,825 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:27:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:15 Caused by: Ice.CommunicatorDestroyedException: null
01:27:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:15 ... 7 common frames omitted
01:27:18 2024-10-25 01:27:18,272 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:27:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:18 Caused by: Ice.CommunicatorDestroyedException: null
01:27:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:18 ... 7 common frames omitted
01:27:20 2024-10-25 01:27:20,896 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:27:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:20 Caused by: Ice.CommunicatorDestroyedException: null
01:27:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:20 ... 7 common frames omitted
01:27:23 2024-10-25 01:27:23,369 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:27:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:23 Caused by: Ice.CommunicatorDestroyedException: null
01:27:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:23 ... 7 common frames omitted
01:27:25 2024-10-25 01:27:25,939 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:27:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:25 Caused by: Ice.CommunicatorDestroyedException: null
01:27:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:25 ... 7 common frames omitted
01:27:28 2024-10-25 01:27:28,224 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:27:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:28 Caused by: Ice.CommunicatorDestroyedException: null
01:27:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:28 ... 7 common frames omitted
01:27:30 2024-10-25 01:27:30,684 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:27:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:30 Caused by: Ice.CommunicatorDestroyedException: null
01:27:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:30 ... 7 common frames omitted
01:27:58 2024-10-25 01:27:58,478 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:27:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:58 Caused by: Ice.CommunicatorDestroyedException: null
01:27:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:58 ... 7 common frames omitted
01:28:02 2024-10-25 01:28:02,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:28:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:02 Caused by: Ice.CommunicatorDestroyedException: null
01:28:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:02 ... 7 common frames omitted
01:28:06 2024-10-25 01:28:06,416 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:06 Caused by: Ice.CommunicatorDestroyedException: null
01:28:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:06 ... 7 common frames omitted
01:28:10 2024-10-25 01:28:10,144 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:10 Caused by: Ice.CommunicatorDestroyedException: null
01:28:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:10 ... 7 common frames omitted
01:28:13 2024-10-25 01:28:13,970 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:13 Caused by: Ice.CommunicatorDestroyedException: null
01:28:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:13 ... 7 common frames omitted
01:28:17 2024-10-25 01:28:17,637 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:17 Caused by: Ice.CommunicatorDestroyedException: null
01:28:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:17 ... 7 common frames omitted
01:28:21 2024-10-25 01:28:21,189 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:21 Caused by: Ice.CommunicatorDestroyedException: null
01:28:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:21 ... 7 common frames omitted
01:28:24 2024-10-25 01:28:24,879 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:24 Caused by: Ice.CommunicatorDestroyedException: null
01:28:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:24 ... 7 common frames omitted
01:28:28 2024-10-25 01:28:28,552 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:28:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:28 Caused by: Ice.CommunicatorDestroyedException: null
01:28:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:28 ... 7 common frames omitted
01:28:31 2024-10-25 01:28:31,112 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:28:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:31 Caused by: Ice.CommunicatorDestroyedException: null
01:28:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:31 ... 7 common frames omitted
01:28:33 2024-10-25 01:28:33,371 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:28:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:33 Caused by: Ice.CommunicatorDestroyedException: null
01:28:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:33 ... 7 common frames omitted
01:28:35 2024-10-25 01:28:35,531 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:28:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:35 Caused by: Ice.CommunicatorDestroyedException: null
01:28:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:35 ... 7 common frames omitted
01:28:40 2024-10-25 01:28:40,704 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:40 Caused by: Ice.CommunicatorDestroyedException: null
01:28:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:40 ... 7 common frames omitted
01:28:43 2024-10-25 01:28:43,373 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:43 Caused by: Ice.CommunicatorDestroyedException: null
01:28:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:43 ... 7 common frames omitted
01:28:46 2024-10-25 01:28:46,223 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:46 Caused by: Ice.CommunicatorDestroyedException: null
01:28:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:46 ... 7 common frames omitted
01:28:49 2024-10-25 01:28:49,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:49 Caused by: Ice.CommunicatorDestroyedException: null
01:28:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:49 ... 7 common frames omitted
01:28:51 2024-10-25 01:28:51,810 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:51 Caused by: Ice.CommunicatorDestroyedException: null
01:28:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:51 ... 7 common frames omitted
01:28:55 2024-10-25 01:28:55,992 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:55 Caused by: Ice.CommunicatorDestroyedException: null
01:28:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:55 ... 7 common frames omitted
01:29:00 2024-10-25 01:29:00,108 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:29:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:00 Caused by: Ice.CommunicatorDestroyedException: null
01:29:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:00 ... 7 common frames omitted
01:29:04 2024-10-25 01:29:04,281 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:29:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:04 Caused by: Ice.CommunicatorDestroyedException: null
01:29:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:04 ... 7 common frames omitted
01:29:08 2024-10-25 01:29:08,537 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:29:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:08 Caused by: Ice.CommunicatorDestroyedException: null
01:29:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:08 ... 7 common frames omitted
01:29:14 2024-10-25 01:29:14,014 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:29:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:14 Caused by: Ice.CommunicatorDestroyedException: null
01:29:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:14 ... 7 common frames omitted
01:29:18 2024-10-25 01:29:18,473 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:29:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:18 Caused by: Ice.CommunicatorDestroyedException: null
01:29:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:18 ... 7 common frames omitted
01:29:23 2024-10-25 01:29:23,031 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:29:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:23 Caused by: Ice.CommunicatorDestroyedException: null
01:29:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:23 ... 7 common frames omitted
01:30:48 2024-10-25 01:30:48,627 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:30:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:48 Caused by: Ice.CommunicatorDestroyedException: null
01:30:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:48 ... 7 common frames omitted
01:30:51 2024-10-25 01:30:51,666 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:30:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:51 Caused by: Ice.CommunicatorDestroyedException: null
01:30:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:51 ... 7 common frames omitted
01:30:54 2024-10-25 01:30:54,658 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:30:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:54 Caused by: Ice.CommunicatorDestroyedException: null
01:30:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:54 ... 7 common frames omitted
01:30:57 2024-10-25 01:30:57,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:30:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:57 Caused by: Ice.CommunicatorDestroyedException: null
01:30:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:57 ... 7 common frames omitted
01:31:00 2024-10-25 01:31:00,505 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:31:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:00 Caused by: Ice.CommunicatorDestroyedException: null
01:31:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:00 ... 7 common frames omitted
01:31:05 2024-10-25 01:31:05,731 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:31:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:05 Caused by: Ice.CommunicatorDestroyedException: null
01:31:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:05 ... 7 common frames omitted
01:31:10 2024-10-25 01:31:10,647 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:31:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:10 Caused by: Ice.CommunicatorDestroyedException: null
01:31:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:10 ... 7 common frames omitted
01:31:15 2024-10-25 01:31:15,311 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:31:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:15 Caused by: Ice.CommunicatorDestroyedException: null
01:31:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:15 ... 7 common frames omitted
01:31:19 2024-10-25 01:31:19,963 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:31:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:19 Caused by: Ice.CommunicatorDestroyedException: null
01:31:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:19 ... 7 common frames omitted
01:31:24 2024-10-25 01:31:24,644 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:31:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:24 Caused by: Ice.CommunicatorDestroyedException: null
01:31:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:24 ... 7 common frames omitted
01:31:29 2024-10-25 01:31:29,473 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:31:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:29 Caused by: Ice.CommunicatorDestroyedException: null
01:31:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:29 ... 7 common frames omitted
01:31:33 2024-10-25 01:31:33,805 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:31:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:33 Caused by: Ice.CommunicatorDestroyedException: null
01:31:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:33 ... 7 common frames omitted
01:31:38 2024-10-25 01:31:38,434 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:31:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:38 Caused by: Ice.CommunicatorDestroyedException: null
01:31:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:38 ... 7 common frames omitted
01:31:44 2024-10-25 01:31:44,515 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:31:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:44 Caused by: Ice.CommunicatorDestroyedException: null
01:31:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:44 ... 7 common frames omitted
01:31:50 2024-10-25 01:31:50,325 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:31:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:50 Caused by: Ice.CommunicatorDestroyedException: null
01:31:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:50 ... 7 common frames omitted
01:31:57 2024-10-25 01:31:57,964 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:31:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:57 Caused by: Ice.CommunicatorDestroyedException: null
01:31:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:57 ... 7 common frames omitted
01:32:03 2024-10-25 01:32:03,492 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:03 Caused by: Ice.CommunicatorDestroyedException: null
01:32:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:03 ... 7 common frames omitted
01:32:04 2024-10-25 01:32:04,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:04 Caused by: Ice.CommunicatorDestroyedException: null
01:32:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:04 ... 7 common frames omitted
01:32:06 2024-10-25 01:32:06,086 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:06 Caused by: Ice.CommunicatorDestroyedException: null
01:32:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:06 ... 7 common frames omitted
01:32:07 2024-10-25 01:32:07,438 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:07 Caused by: Ice.CommunicatorDestroyedException: null
01:32:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:07 ... 7 common frames omitted
01:32:08 2024-10-25 01:32:08,694 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:08 Caused by: Ice.CommunicatorDestroyedException: null
01:32:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:08 ... 7 common frames omitted
01:32:09 2024-10-25 01:32:09,904 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:09 Caused by: Ice.CommunicatorDestroyedException: null
01:32:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:09 ... 7 common frames omitted
01:32:11 2024-10-25 01:32:11,187 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:11 Caused by: Ice.CommunicatorDestroyedException: null
01:32:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:11 ... 7 common frames omitted
01:32:12 2024-10-25 01:32:12,469 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:12 Caused by: Ice.CommunicatorDestroyedException: null
01:32:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:12 ... 7 common frames omitted
01:32:13 2024-10-25 01:32:13,670 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:13 Caused by: Ice.CommunicatorDestroyedException: null
01:32:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:13 ... 7 common frames omitted
01:32:14 2024-10-25 01:32:14,857 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:14 Caused by: Ice.CommunicatorDestroyedException: null
01:32:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:14 ... 7 common frames omitted
01:32:16 2024-10-25 01:32:16,012 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:16 Caused by: Ice.CommunicatorDestroyedException: null
01:32:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:16 ... 7 common frames omitted
01:32:17 2024-10-25 01:32:17,116 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:17 Caused by: Ice.CommunicatorDestroyedException: null
01:32:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:17 ... 7 common frames omitted
01:32:18 2024-10-25 01:32:18,226 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:18 Caused by: Ice.CommunicatorDestroyedException: null
01:32:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:18 ... 7 common frames omitted
01:32:19 2024-10-25 01:32:19,985 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:19 Caused by: Ice.CommunicatorDestroyedException: null
01:32:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:19 ... 7 common frames omitted
01:32:21 2024-10-25 01:32:21,237 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:21 Caused by: Ice.CommunicatorDestroyedException: null
01:32:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:21 ... 7 common frames omitted
01:32:22 2024-10-25 01:32:22,424 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:22 Caused by: Ice.CommunicatorDestroyedException: null
01:32:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:22 ... 7 common frames omitted
01:32:23 2024-10-25 01:32:23,675 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:23 Caused by: Ice.CommunicatorDestroyedException: null
01:32:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:23 ... 7 common frames omitted
01:32:25 2024-10-25 01:32:25,098 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:25 Caused by: Ice.CommunicatorDestroyedException: null
01:32:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:25 ... 7 common frames omitted
01:32:27 2024-10-25 01:32:27,322 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:27 Caused by: Ice.CommunicatorDestroyedException: null
01:32:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:27 ... 7 common frames omitted
01:32:28 2024-10-25 01:32:28,600 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:28 Caused by: Ice.CommunicatorDestroyedException: null
01:32:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:28 ... 7 common frames omitted
01:32:29 2024-10-25 01:32:29,886 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:29 Caused by: Ice.CommunicatorDestroyedException: null
01:32:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:29 ... 7 common frames omitted
01:32:31 2024-10-25 01:32:31,293 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:31 Caused by: Ice.CommunicatorDestroyedException: null
01:32:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:31 ... 7 common frames omitted
01:32:32 2024-10-25 01:32:32,679 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:32 Caused by: Ice.CommunicatorDestroyedException: null
01:32:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:32 ... 7 common frames omitted
01:32:33 2024-10-25 01:32:33,955 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:33 Caused by: Ice.CommunicatorDestroyedException: null
01:32:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:33 ... 7 common frames omitted
01:32:35 2024-10-25 01:32:35,235 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:35 Caused by: Ice.CommunicatorDestroyedException: null
01:32:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:35 ... 7 common frames omitted
01:32:36 2024-10-25 01:32:36,459 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:36 Caused by: Ice.CommunicatorDestroyedException: null
01:32:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:36 ... 7 common frames omitted
01:32:37 2024-10-25 01:32:37,667 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:37 Caused by: Ice.CommunicatorDestroyedException: null
01:32:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:37 ... 7 common frames omitted
01:32:38 2024-10-25 01:32:38,941 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:38 Caused by: Ice.CommunicatorDestroyedException: null
01:32:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:38 ... 7 common frames omitted
01:32:40 2024-10-25 01:32:40,164 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:40 Caused by: Ice.CommunicatorDestroyedException: null
01:32:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:40 ... 7 common frames omitted
01:32:41 2024-10-25 01:32:41,375 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:41 Caused by: Ice.CommunicatorDestroyedException: null
01:32:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:41 ... 7 common frames omitted
01:32:42 2024-10-25 01:32:42,584 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:42 Caused by: Ice.CommunicatorDestroyedException: null
01:32:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:42 ... 7 common frames omitted
01:32:43 2024-10-25 01:32:43,886 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:43 Caused by: Ice.CommunicatorDestroyedException: null
01:32:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:43 ... 7 common frames omitted
01:32:45 2024-10-25 01:32:45,074 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:45 Caused by: Ice.CommunicatorDestroyedException: null
01:32:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:45 ... 7 common frames omitted
01:32:47 2024-10-25 01:32:47,617 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:47 Caused by: Ice.CommunicatorDestroyedException: null
01:32:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:47 ... 7 common frames omitted
01:32:52 2024-10-25 01:32:52,787 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:52 Caused by: Ice.CommunicatorDestroyedException: null
01:32:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:52 ... 7 common frames omitted
01:32:55 2024-10-25 01:32:55,210 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:55 Caused by: Ice.CommunicatorDestroyedException: null
01:32:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:55 ... 7 common frames omitted
01:32:57 2024-10-25 01:32:57,751 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:57 Caused by: Ice.CommunicatorDestroyedException: null
01:32:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:57 ... 7 common frames omitted
01:33:03 2024-10-25 01:33:02,999 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:33:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:03 Caused by: Ice.CommunicatorDestroyedException: null
01:33:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:03 ... 7 common frames omitted
01:33:07 2024-10-25 01:33:07,264 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:33:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:07 Caused by: Ice.CommunicatorDestroyedException: null
01:33:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:07 ... 7 common frames omitted
01:33:11 2024-10-25 01:33:11,400 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:11 Caused by: Ice.CommunicatorDestroyedException: null
01:33:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:11 ... 7 common frames omitted
01:33:26 2024-10-25 01:33:26,966 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:26 Caused by: Ice.CommunicatorDestroyedException: null
01:33:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:26 ... 7 common frames omitted
01:33:29 2024-10-25 01:33:29,583 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:33:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:29 Caused by: Ice.CommunicatorDestroyedException: null
01:33:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:29 ... 7 common frames omitted
01:33:31 2024-10-25 01:33:31,975 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:33:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:31 Caused by: Ice.CommunicatorDestroyedException: null
01:33:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:31 ... 7 common frames omitted
01:33:34 2024-10-25 01:33:34,386 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:33:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:34 Caused by: Ice.CommunicatorDestroyedException: null
01:33:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:34 ... 7 common frames omitted
01:38:04 2024-10-25 01:38:04,407 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:38:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:04 Caused by: Ice.CommunicatorDestroyedException: null
01:38:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:04 ... 7 common frames omitted
01:38:05 2024-10-25 01:38:05,920 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:38:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:05 Caused by: Ice.CommunicatorDestroyedException: null
01:38:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:05 ... 7 common frames omitted
01:38:06 2024-10-25 01:38:06,521 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:38:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:06 Caused by: Ice.CommunicatorDestroyedException: null
01:38:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:06 ... 7 common frames omitted
01:38:07 2024-10-25 01:38:07,078 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:38:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:07 Caused by: Ice.CommunicatorDestroyedException: null
01:38:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:07 ... 7 common frames omitted
01:38:07 2024-10-25 01:38:07,728 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:38:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:07 Caused by: Ice.CommunicatorDestroyedException: null
01:38:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:07 ... 7 common frames omitted
01:38:08 2024-10-25 01:38:08,977 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:38:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:08 Caused by: Ice.CommunicatorDestroyedException: null
01:38:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:08 ... 7 common frames omitted
01:38:09 2024-10-25 01:38:09,647 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:38:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:09 Caused by: Ice.CommunicatorDestroyedException: null
01:38:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:09 ... 7 common frames omitted
01:38:10 2024-10-25 01:38:10,875 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:38:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:10 Caused by: Ice.CommunicatorDestroyedException: null
01:38:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:10 ... 7 common frames omitted
01:38:11 2024-10-25 01:38:11,444 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:38:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:11 Caused by: Ice.CommunicatorDestroyedException: null
01:38:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:11 ... 7 common frames omitted
01:38:12 2024-10-25 01:38:12,115 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:38:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:12 Caused by: Ice.CommunicatorDestroyedException: null
01:38:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:12 ... 7 common frames omitted
01:38:12 2024-10-25 01:38:12,691 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:38:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:12 Caused by: Ice.CommunicatorDestroyedException: null
01:38:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:12 ... 7 common frames omitted
01:38:15 2024-10-25 01:38:15,149 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:38:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:15 Caused by: Ice.CommunicatorDestroyedException: null
01:38:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:15 ... 7 common frames omitted
01:40:24 2024-10-25 01:40:24,774 ERROR [ ome.system.UpgradeCheck] (Response-1) Error reading from url: http://upgrade.openmicroscopy.org.uk?version=test;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
01:41:07 2024-10-25 01:41:07,897 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:41:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:07 Caused by: Ice.CommunicatorDestroyedException: null
01:41:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:07 ... 7 common frames omitted
01:41:14 2024-10-25 01:41:14,388 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:41:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:14 Caused by: Ice.CommunicatorDestroyedException: null
01:41:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:14 ... 7 common frames omitted
01:41:24 2024-10-25 01:41:24,745 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:41:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:24 Caused by: Ice.CommunicatorDestroyedException: null
01:41:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:24 ... 7 common frames omitted
01:41:50 2024-10-25 01:41:50,375 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:41:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:50 Caused by: Ice.CommunicatorDestroyedException: null
01:41:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:50 ... 7 common frames omitted
01:41:52 2024-10-25 01:41:52,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:41:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:52 Caused by: Ice.CommunicatorDestroyedException: null
01:41:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:52 ... 7 common frames omitted
01:41:54 2024-10-25 01:41:54,848 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:41:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:54 Caused by: Ice.CommunicatorDestroyedException: null
01:41:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:54 ... 7 common frames omitted
01:41:57 2024-10-25 01:41:57,173 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:41:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:57 Caused by: Ice.CommunicatorDestroyedException: null
01:41:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:57 ... 7 common frames omitted
01:41:59 2024-10-25 01:41:59,683 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:41:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:59 Caused by: Ice.CommunicatorDestroyedException: null
01:41:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:59 ... 7 common frames omitted
01:42:01 2024-10-25 01:42:01,879 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:01 Caused by: Ice.CommunicatorDestroyedException: null
01:42:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:01 ... 7 common frames omitted
01:42:04 2024-10-25 01:42:04,053 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:04 Caused by: Ice.CommunicatorDestroyedException: null
01:42:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:04 ... 7 common frames omitted
01:42:06 2024-10-25 01:42:06,285 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:06 Caused by: Ice.CommunicatorDestroyedException: null
01:42:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:06 ... 7 common frames omitted
01:42:08 2024-10-25 01:42:08,441 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:42:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:08 Caused by: Ice.CommunicatorDestroyedException: null
01:42:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:08 ... 7 common frames omitted
01:42:10 2024-10-25 01:42:10,667 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:42:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:10 Caused by: Ice.CommunicatorDestroyedException: null
01:42:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:10 ... 7 common frames omitted
01:42:12 2024-10-25 01:42:12,688 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:12 Caused by: Ice.CommunicatorDestroyedException: null
01:42:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:12 ... 7 common frames omitted
01:42:14 2024-10-25 01:42:14,735 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:14 Caused by: Ice.CommunicatorDestroyedException: null
01:42:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:14 ... 7 common frames omitted
01:42:16 2024-10-25 01:42:16,040 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:16 Caused by: Ice.CommunicatorDestroyedException: null
01:42:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:16 ... 7 common frames omitted
01:49:07 2024-10-25 01:49:07,688 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:49:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:07 Caused by: Ice.CommunicatorDestroyedException: null
01:49:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:07 ... 7 common frames omitted
01:50:02 2024-10-25 01:50:02,173 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:50:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:50:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:50:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:50:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:50:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:50:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:50:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:50:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:50:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:50:02 Caused by: Ice.CommunicatorDestroyedException: null
01:50:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:50:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:50:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:50:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:50:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:50:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:50:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:50:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:50:02 ... 7 common frames omitted
01:50:05 2024-10-25 01:50:05,643 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:50:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:50:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:50:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:50:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:50:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:50:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:50:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:50:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:50:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:50:05 Caused by: Ice.CommunicatorDestroyedException: null
01:50:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:50:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:50:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:50:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:50:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:50:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:50:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:50:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:50:05 ... 7 common frames omitted
02:04:31 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:04:31 reason = "Password check failed for '9763c458-a056-4feb-970d-6b0d86bd7af1': [id=3014]"
02:04:31 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:04:31 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:04:31 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:04:32 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:04:32 at java.base/java.lang.Class.newInstance(Class.java:584)
02:04:32 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:04:32 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:04:32 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:04:32 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:04:32 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:04:32 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:04:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:04:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:04:32 at omero.client.createSession(client.java:776)
02:04:32 at omero.client.createSession(client.java:719)
02:04:32 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:04:32 at omero.gateway.Gateway.connect(Gateway.java:297)
02:04:32 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:04:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:32 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:32 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:32 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:32 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:32 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:04:32 reason = "Password check failed for '9763c458-a056-4feb-970d-6b0d86bd7af1': [id=3014]"
02:04:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:04:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:04:32 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:04:32 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:04:32 at java.base/java.lang.Class.newInstance(Class.java:584)
02:04:32 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:04:32 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:04:32 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:04:32 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:04:32 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:04:32 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:04:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:04:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:04:32 at omero.client.createSession(client.java:776)
02:04:32 at omero.client.createSession(client.java:719)
02:04:32 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:04:32 at omero.gateway.Gateway.connect(Gateway.java:297)
02:04:32 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:04:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:32 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:32 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:32 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:32 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:32 Exception in thread "TestNG-method=testLoginFallback-1"
02:04:46 Support for FileAnnotationData is deprecated. Use OriginalFile instead.
02:04:47 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:04:47 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:04:47 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:04:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:47 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:47 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:47 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:47 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:47 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:04:47 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:04:47 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:04:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:47 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:47 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:47 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:47 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:47 Exception in thread "TestNG-method=testInvalidParams-1"
02:04:48 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:04:48 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:04:48 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:04:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:48 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:48 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:48 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:48 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:48 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:04:48 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:04:48 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:04:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:48 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:48 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:48 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:48 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:48 Exception in thread "TestNG-method=testInvalidParams-1"
02:04:48 No concrete type specified for column 'column1', using Object.toString()
02:04:49 Request rows 1239 to 1322; columns [5, 3, 2, 7]
02:04:50 Request rows 1406 to 1451; columns [8, 1, 9, 4, 10, 7, 3, 2]
02:04:52 Request rows 1463 to 1463; columns [8, 6]
02:04:53 Request rows 569 to 646; columns [0, 10, 2]
02:04:54 Request rows 803 to 835; columns [4, 5, 10, 8, 2, 7, 1, 6]
02:05:05 2024-10-25 02:05:05,001 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:05:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:05:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:05:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:05:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:05:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:05:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:05:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:05 Caused by: Ice.CommunicatorDestroyedException: null
02:05:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:05:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:05:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:05:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:05:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:05:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:05:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:05:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:05:05 ... 7 common frames omitted
02:06:32 2024-10-25 02:06:32,911 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:32 Caused by: Ice.CommunicatorDestroyedException: null
02:06:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:32 ... 7 common frames omitted
02:06:37 2024-10-25 02:06:37,353 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:37 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:37 Caused by: Ice.CommunicatorDestroyedException: null
02:06:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:37 ... 7 common frames omitted
02:06:41 2024-10-25 02:06:41,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:41 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:41 Caused by: Ice.CommunicatorDestroyedException: null
02:06:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:41 ... 7 common frames omitted
02:06:45 2024-10-25 02:06:45,564 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:06:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:45 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:45 Caused by: Ice.CommunicatorDestroyedException: null
02:06:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:45 ... 7 common frames omitted
02:06:49 2024-10-25 02:06:49,267 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:06:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:49 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:49 Caused by: Ice.CommunicatorDestroyedException: null
02:06:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:49 ... 7 common frames omitted
02:06:52 2024-10-25 02:06:52,876 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:52 Caused by: Ice.CommunicatorDestroyedException: null
02:06:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:52 ... 7 common frames omitted
02:06:56 2024-10-25 02:06:56,538 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:06:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:56 Caused by: Ice.CommunicatorDestroyedException: null
02:06:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:56 ... 7 common frames omitted
02:06:59 2024-10-25 02:06:59,893 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:06:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:59 Caused by: Ice.CommunicatorDestroyedException: null
02:06:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:59 ... 7 common frames omitted
02:07:03 2024-10-25 02:07:03,277 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:03 Caused by: Ice.CommunicatorDestroyedException: null
02:07:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:03 ... 7 common frames omitted
02:07:05 2024-10-25 02:07:05,087 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:05 Caused by: Ice.CommunicatorDestroyedException: null
02:07:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:05 ... 7 common frames omitted
02:07:06 2024-10-25 02:07:06,744 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:06 Caused by: Ice.CommunicatorDestroyedException: null
02:07:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:06 ... 7 common frames omitted
02:07:08 2024-10-25 02:07:08,498 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:08 Caused by: Ice.CommunicatorDestroyedException: null
02:07:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:08 ... 7 common frames omitted
02:07:10 2024-10-25 02:07:10,993 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:10 Caused by: Ice.CommunicatorDestroyedException: null
02:07:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:10 ... 7 common frames omitted
02:07:14 2024-10-25 02:07:14,098 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:14 Caused by: Ice.CommunicatorDestroyedException: null
02:07:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:14 ... 7 common frames omitted
02:07:17 2024-10-25 02:07:17,270 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:17 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:17 Caused by: Ice.CommunicatorDestroyedException: null
02:07:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:17 ... 7 common frames omitted
02:07:20 2024-10-25 02:07:20,629 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:20 Caused by: Ice.CommunicatorDestroyedException: null
02:07:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:20 ... 7 common frames omitted
02:07:22 2024-10-25 02:07:22,964 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:22 Caused by: Ice.CommunicatorDestroyedException: null
02:07:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:22 ... 7 common frames omitted
02:07:25 2024-10-25 02:07:25,356 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:25 Caused by: Ice.CommunicatorDestroyedException: null
02:07:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:25 ... 7 common frames omitted
02:07:27 2024-10-25 02:07:27,811 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:27 Caused by: Ice.CommunicatorDestroyedException: null
02:07:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:27 ... 7 common frames omitted
02:07:30 2024-10-25 02:07:30,333 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:30 Caused by: Ice.CommunicatorDestroyedException: null
02:07:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:30 ... 7 common frames omitted
02:07:32 2024-10-25 02:07:32,918 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:32 Caused by: Ice.CommunicatorDestroyedException: null
02:07:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:32 ... 7 common frames omitted
02:07:34 2024-10-25 02:07:34,653 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:34 Caused by: Ice.CommunicatorDestroyedException: null
02:07:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:34 ... 7 common frames omitted
02:07:36 2024-10-25 02:07:36,170 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:36 Caused by: Ice.CommunicatorDestroyedException: null
02:07:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:36 ... 7 common frames omitted
02:07:37 2024-10-25 02:07:37,665 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:37 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:37 Caused by: Ice.CommunicatorDestroyedException: null
02:07:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:37 ... 7 common frames omitted
02:07:40 2024-10-25 02:07:40,391 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:40 Caused by: Ice.CommunicatorDestroyedException: null
02:07:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:40 ... 7 common frames omitted
02:07:44 2024-10-25 02:07:44,643 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:44 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:44 Caused by: Ice.CommunicatorDestroyedException: null
02:07:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:44 ... 7 common frames omitted
02:07:48 2024-10-25 02:07:48,728 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:48 Caused by: Ice.CommunicatorDestroyedException: null
02:07:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:48 ... 7 common frames omitted
02:07:52 2024-10-25 02:07:52,958 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:52 Caused by: Ice.CommunicatorDestroyedException: null
02:07:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:52 ... 7 common frames omitted
02:07:57 2024-10-25 02:07:57,179 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:57 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:57 Caused by: Ice.CommunicatorDestroyedException: null
02:07:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:57 ... 7 common frames omitted
02:07:59 2024-10-25 02:07:59,426 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:59 Caused by: Ice.CommunicatorDestroyedException: null
02:07:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:59 ... 7 common frames omitted
02:08:01 2024-10-25 02:08:01,099 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:01 Caused by: Ice.CommunicatorDestroyedException: null
02:08:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:01 ... 7 common frames omitted
02:08:04 2024-10-25 02:08:04,771 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:04 Caused by: Ice.CommunicatorDestroyedException: null
02:08:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:04 ... 7 common frames omitted
02:08:08 2024-10-25 02:08:08,081 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:08 Caused by: Ice.CommunicatorDestroyedException: null
02:08:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:08 ... 7 common frames omitted
02:08:11 2024-10-25 02:08:11,851 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:11 Caused by: Ice.CommunicatorDestroyedException: null
02:08:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:11 ... 7 common frames omitted
02:08:15 2024-10-25 02:08:15,253 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:15 Caused by: Ice.CommunicatorDestroyedException: null
02:08:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:15 ... 7 common frames omitted
02:08:16 2024-10-25 02:08:16,978 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:16 Caused by: Ice.CommunicatorDestroyedException: null
02:08:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:16 ... 7 common frames omitted
02:08:18 2024-10-25 02:08:18,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:18 Caused by: Ice.CommunicatorDestroyedException: null
02:08:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:18 ... 7 common frames omitted
02:08:20 2024-10-25 02:08:20,506 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:20 Caused by: Ice.CommunicatorDestroyedException: null
02:08:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:20 ... 7 common frames omitted
02:08:59 2024-10-25 02:08:59,640 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:59 Caused by: Ice.CommunicatorDestroyedException: null
02:08:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:59 ... 7 common frames omitted
02:09:04 2024-10-25 02:09:04,473 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:09:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:04 Caused by: Ice.CommunicatorDestroyedException: null
02:09:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:04 ... 7 common frames omitted
02:09:09 2024-10-25 02:09:09,069 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:09:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:09 Caused by: Ice.CommunicatorDestroyedException: null
02:09:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:09 ... 7 common frames omitted
02:09:34 2024-10-25 02:09:34,532 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:09:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:34 Caused by: Ice.CommunicatorDestroyedException: null
02:09:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:34 ... 7 common frames omitted
02:10:16 2024-10-25 02:10:16,198 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:16 Caused by: Ice.CommunicatorDestroyedException: null
02:10:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:16 ... 7 common frames omitted
02:10:27 2024-10-25 02:10:27,190 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:27 Caused by: Ice.CommunicatorDestroyedException: null
02:10:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:27 ... 7 common frames omitted
02:10:28 2024-10-25 02:10:28,466 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:28 Caused by: Ice.CommunicatorDestroyedException: null
02:10:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:28 ... 7 common frames omitted
02:10:31 2024-10-25 02:10:31,202 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:31 Caused by: Ice.CommunicatorDestroyedException: null
02:10:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:31 ... 7 common frames omitted
02:10:32 2024-10-25 02:10:32,549 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:32 Caused by: Ice.CommunicatorDestroyedException: null
02:10:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:32 ... 7 common frames omitted
02:10:34 2024-10-25 02:10:34,092 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:34 Caused by: Ice.CommunicatorDestroyedException: null
02:10:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:34 ... 7 common frames omitted
02:10:36 2024-10-25 02:10:36,187 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:36 Caused by: Ice.CommunicatorDestroyedException: null
02:10:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:36 ... 7 common frames omitted
02:10:37 2024-10-25 02:10:37,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:37 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:37 Caused by: Ice.CommunicatorDestroyedException: null
02:10:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:37 ... 7 common frames omitted
02:10:38 2024-10-25 02:10:38,969 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:38 Caused by: Ice.CommunicatorDestroyedException: null
02:10:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:38 ... 7 common frames omitted
02:10:40 2024-10-25 02:10:40,451 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:40 Caused by: Ice.CommunicatorDestroyedException: null
02:10:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:40 ... 7 common frames omitted
02:10:43 2024-10-25 02:10:43,114 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:43 Caused by: Ice.CommunicatorDestroyedException: null
02:10:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:43 ... 7 common frames omitted
02:10:43 2024-10-25 02:10:43,961 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:43 Caused by: Ice.CommunicatorDestroyedException: null
02:10:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:43 ... 7 common frames omitted
02:10:45 2024-10-25 02:10:45,321 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:45 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:45 Caused by: Ice.CommunicatorDestroyedException: null
02:10:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:45 ... 7 common frames omitted
02:10:46 2024-10-25 02:10:46,163 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:46 Caused by: Ice.CommunicatorDestroyedException: null
02:10:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:46 ... 7 common frames omitted
02:10:47 2024-10-25 02:10:47,553 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:47 Caused by: Ice.CommunicatorDestroyedException: null
02:10:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:47 ... 7 common frames omitted
02:10:48 2024-10-25 02:10:48,384 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:10:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:48 Caused by: Ice.CommunicatorDestroyedException: null
02:10:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:48 ... 7 common frames omitted
02:10:49 2024-10-25 02:10:49,681 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:49 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:49 Caused by: Ice.CommunicatorDestroyedException: null
02:10:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:49 ... 7 common frames omitted
02:10:50 2024-10-25 02:10:50,477 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:10:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:50 Caused by: Ice.CommunicatorDestroyedException: null
02:10:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:50 ... 7 common frames omitted
02:10:51 2024-10-25 02:10:51,762 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:51 Caused by: Ice.CommunicatorDestroyedException: null
02:10:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:51 ... 7 common frames omitted
02:10:52 2024-10-25 02:10:52,601 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:10:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:52 Caused by: Ice.CommunicatorDestroyedException: null
02:10:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:52 ... 7 common frames omitted
02:10:53 2024-10-25 02:10:53,848 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:10:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:53 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:53 Caused by: Ice.CommunicatorDestroyedException: null
02:10:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:53 ... 7 common frames omitted
02:10:54 2024-10-25 02:10:54,710 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:54 Caused by: Ice.CommunicatorDestroyedException: null
02:10:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:54 ... 7 common frames omitted
02:10:56 2024-10-25 02:10:56,345 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:56 Caused by: Ice.CommunicatorDestroyedException: null
02:10:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:56 ... 7 common frames omitted
02:10:57 2024-10-25 02:10:57,140 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:10:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:57 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:57 Caused by: Ice.CommunicatorDestroyedException: null
02:10:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:57 ... 7 common frames omitted
02:10:58 2024-10-25 02:10:58,297 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:58 Caused by: Ice.CommunicatorDestroyedException: null
02:10:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:58 ... 7 common frames omitted
02:10:59 2024-10-25 02:10:59,071 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:59 Caused by: Ice.CommunicatorDestroyedException: null
02:10:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:59 ... 7 common frames omitted
02:11:00 2024-10-25 02:11:00,492 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:00 Caused by: Ice.CommunicatorDestroyedException: null
02:11:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:00 ... 7 common frames omitted
02:11:01 2024-10-25 02:11:01,357 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:01 Caused by: Ice.CommunicatorDestroyedException: null
02:11:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:01 ... 7 common frames omitted
02:11:02 2024-10-25 02:11:02,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:02 Caused by: Ice.CommunicatorDestroyedException: null
02:11:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:02 ... 7 common frames omitted
02:11:03 2024-10-25 02:11:03,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:03 Caused by: Ice.CommunicatorDestroyedException: null
02:11:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:03 ... 7 common frames omitted
02:11:05 2024-10-25 02:11:05,162 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:05 Caused by: Ice.CommunicatorDestroyedException: null
02:11:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:05 ... 7 common frames omitted
02:11:05 2024-10-25 02:11:05,945 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:05 Caused by: Ice.CommunicatorDestroyedException: null
02:11:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:05 ... 7 common frames omitted
02:11:07 2024-10-25 02:11:07,410 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:07 Caused by: Ice.CommunicatorDestroyedException: null
02:11:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:07 ... 7 common frames omitted
02:11:08 2024-10-25 02:11:08,246 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:08 Caused by: Ice.CommunicatorDestroyedException: null
02:11:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:08 ... 7 common frames omitted
02:11:09 2024-10-25 02:11:09,621 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:09 Caused by: Ice.CommunicatorDestroyedException: null
02:11:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:09 ... 7 common frames omitted
02:11:10 2024-10-25 02:11:10,417 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:10 Caused by: Ice.CommunicatorDestroyedException: null
02:11:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:10 ... 7 common frames omitted
02:11:11 2024-10-25 02:11:11,774 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:11 Caused by: Ice.CommunicatorDestroyedException: null
02:11:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:11 ... 7 common frames omitted
02:11:12 2024-10-25 02:11:12,584 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:12 Caused by: Ice.CommunicatorDestroyedException: null
02:11:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:12 ... 7 common frames omitted
02:11:14 2024-10-25 02:11:14,006 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:14 Caused by: Ice.CommunicatorDestroyedException: null
02:11:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:14 ... 7 common frames omitted
02:11:14 2024-10-25 02:11:14,833 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:14 Caused by: Ice.CommunicatorDestroyedException: null
02:11:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:14 ... 7 common frames omitted
02:11:16 2024-10-25 02:11:16,187 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:16 Caused by: Ice.CommunicatorDestroyedException: null
02:11:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:16 ... 7 common frames omitted
02:11:16 2024-10-25 02:11:16,992 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:16 Caused by: Ice.CommunicatorDestroyedException: null
02:11:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:16 ... 7 common frames omitted
02:11:28 2024-10-25 02:11:28,523 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:28 Caused by: Ice.CommunicatorDestroyedException: null
02:11:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:28 ... 7 common frames omitted
02:11:29 2024-10-25 02:11:29,319 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:29 Caused by: Ice.CommunicatorDestroyedException: null
02:11:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:29 ... 7 common frames omitted
02:11:35 2024-10-25 02:11:35,710 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:35 Caused by: Ice.CommunicatorDestroyedException: null
02:11:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:35 ... 7 common frames omitted
02:11:36 2024-10-25 02:11:36,556 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:36 Caused by: Ice.CommunicatorDestroyedException: null
02:11:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:36 ... 7 common frames omitted
02:11:43 2024-10-25 02:11:43,108 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:43 Caused by: Ice.CommunicatorDestroyedException: null
02:11:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:43 ... 7 common frames omitted
02:11:44 2024-10-25 02:11:44,028 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:44 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:44 Caused by: Ice.CommunicatorDestroyedException: null
02:11:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:44 ... 7 common frames omitted
02:11:51 2024-10-25 02:11:51,572 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:51 Caused by: Ice.CommunicatorDestroyedException: null
02:11:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:51 ... 7 common frames omitted
02:11:52 2024-10-25 02:11:52,414 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:52 Caused by: Ice.CommunicatorDestroyedException: null
02:11:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:52 ... 7 common frames omitted
02:11:58 2024-10-25 02:11:58,988 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:58 Caused by: Ice.CommunicatorDestroyedException: null
02:11:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:58 ... 7 common frames omitted
02:11:59 2024-10-25 02:11:59,919 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:59 Caused by: Ice.CommunicatorDestroyedException: null
02:11:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:59 ... 7 common frames omitted
02:12:06 2024-10-25 02:12:06,393 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:12:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:06 Caused by: Ice.CommunicatorDestroyedException: null
02:12:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:06 ... 7 common frames omitted
02:12:07 2024-10-25 02:12:07,261 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:07 Caused by: Ice.CommunicatorDestroyedException: null
02:12:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:07 ... 7 common frames omitted
02:12:10 2024-10-25 02:12:10,781 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:12:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:10 Caused by: Ice.CommunicatorDestroyedException: null
02:12:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:10 ... 7 common frames omitted
02:12:11 2024-10-25 02:12:11,686 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:12:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:11 Caused by: Ice.CommunicatorDestroyedException: null
02:12:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:11 ... 7 common frames omitted
02:12:19 2024-10-25 02:12:19,239 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:12:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:19 Caused by: Ice.CommunicatorDestroyedException: null
02:12:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:19 ... 7 common frames omitted
02:12:20 2024-10-25 02:12:20,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:12:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:20 Caused by: Ice.CommunicatorDestroyedException: null
02:12:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:20 ... 7 common frames omitted
02:12:30 2024-10-25 02:12:30,769 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:30 Caused by: Ice.CommunicatorDestroyedException: null
02:12:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:30 ... 7 common frames omitted
02:12:31 2024-10-25 02:12:31,601 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:12:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:31 Caused by: Ice.CommunicatorDestroyedException: null
02:12:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:31 ... 7 common frames omitted
02:12:35 2024-10-25 02:12:35,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:12:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:35 Caused by: Ice.CommunicatorDestroyedException: null
02:12:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:35 ... 7 common frames omitted
02:12:36 2024-10-25 02:12:36,025 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:12:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:36 Caused by: Ice.CommunicatorDestroyedException: null
02:12:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:36 ... 7 common frames omitted
02:12:42 2024-10-25 02:12:42,545 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:12:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:42 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:42 Caused by: Ice.CommunicatorDestroyedException: null
02:12:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:42 ... 7 common frames omitted
02:12:43 2024-10-25 02:12:43,377 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:12:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:43 Caused by: Ice.CommunicatorDestroyedException: null
02:12:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:43 ... 7 common frames omitted
02:12:46 2024-10-25 02:12:46,867 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:12:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:46 Caused by: Ice.CommunicatorDestroyedException: null
02:12:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:46 ... 7 common frames omitted
02:12:47 2024-10-25 02:12:47,649 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:47 Caused by: Ice.CommunicatorDestroyedException: null
02:12:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:47 ... 7 common frames omitted
02:12:55 2024-10-25 02:12:55,243 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:55 Caused by: Ice.CommunicatorDestroyedException: null
02:12:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:55 ... 7 common frames omitted
02:12:56 2024-10-25 02:12:56,086 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:12:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:56 Caused by: Ice.CommunicatorDestroyedException: null
02:12:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:56 ... 7 common frames omitted
02:13:02 2024-10-25 02:13:02,667 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:13:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:02 Caused by: Ice.CommunicatorDestroyedException: null
02:13:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:02 ... 7 common frames omitted
02:13:03 2024-10-25 02:13:03,533 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:03 Caused by: Ice.CommunicatorDestroyedException: null
02:13:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:03 ... 7 common frames omitted
02:13:07 2024-10-25 02:13:07,122 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:13:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:07 Caused by: Ice.CommunicatorDestroyedException: null
02:13:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:07 ... 7 common frames omitted
02:13:08 2024-10-25 02:13:08,005 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:08 Caused by: Ice.CommunicatorDestroyedException: null
02:13:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:08 ... 7 common frames omitted
02:13:14 2024-10-25 02:13:14,311 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:14 Caused by: Ice.CommunicatorDestroyedException: null
02:13:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:14 ... 7 common frames omitted
02:13:15 2024-10-25 02:13:15,149 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:13:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:15 Caused by: Ice.CommunicatorDestroyedException: null
02:13:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:15 ... 7 common frames omitted
02:13:18 2024-10-25 02:13:18,581 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:18 Caused by: Ice.CommunicatorDestroyedException: null
02:13:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:18 ... 7 common frames omitted
02:13:19 2024-10-25 02:13:19,516 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:13:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:19 Caused by: Ice.CommunicatorDestroyedException: null
02:13:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:19 ... 7 common frames omitted
02:13:22 2024-10-25 02:13:22,819 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:13:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:22 Caused by: Ice.CommunicatorDestroyedException: null
02:13:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:22 ... 7 common frames omitted
02:13:23 2024-10-25 02:13:23,673 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:13:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:23 Caused by: Ice.CommunicatorDestroyedException: null
02:13:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:23 ... 7 common frames omitted
02:13:26 2024-10-25 02:13:26,987 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:13:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:26 Caused by: Ice.CommunicatorDestroyedException: null
02:13:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:26 ... 7 common frames omitted
02:13:27 2024-10-25 02:13:27,885 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:27 Caused by: Ice.CommunicatorDestroyedException: null
02:13:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:27 ... 7 common frames omitted
02:13:35 2024-10-25 02:13:35,464 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:13:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:35 Caused by: Ice.CommunicatorDestroyedException: null
02:13:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:35 ... 7 common frames omitted
02:13:36 2024-10-25 02:13:36,298 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:36 Caused by: Ice.CommunicatorDestroyedException: null
02:13:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:36 ... 7 common frames omitted
02:13:42 2024-10-25 02:13:42,967 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:42 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:42 Caused by: Ice.CommunicatorDestroyedException: null
02:13:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:42 ... 7 common frames omitted
02:13:43 2024-10-25 02:13:43,815 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:13:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:43 Caused by: Ice.CommunicatorDestroyedException: null
02:13:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:43 ... 7 common frames omitted
02:13:50 2024-10-25 02:13:50,293 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:50 Caused by: Ice.CommunicatorDestroyedException: null
02:13:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:50 ... 7 common frames omitted
02:13:51 2024-10-25 02:13:51,214 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:13:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:51 Caused by: Ice.CommunicatorDestroyedException: null
02:13:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:51 ... 7 common frames omitted
02:13:54 2024-10-25 02:13:54,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:13:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:54 Caused by: Ice.CommunicatorDestroyedException: null
02:13:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:54 ... 7 common frames omitted
02:13:55 2024-10-25 02:13:55,768 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:13:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:55 Caused by: Ice.CommunicatorDestroyedException: null
02:13:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:55 ... 7 common frames omitted
02:14:03 2024-10-25 02:14:03,290 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:03 Caused by: Ice.CommunicatorDestroyedException: null
02:14:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:03 ... 7 common frames omitted
02:14:04 2024-10-25 02:14:04,250 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:14:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:04 Caused by: Ice.CommunicatorDestroyedException: null
02:14:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:04 ... 7 common frames omitted
02:14:10 2024-10-25 02:14:10,780 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:14:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:10 Caused by: Ice.CommunicatorDestroyedException: null
02:14:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:10 ... 7 common frames omitted
02:14:11 2024-10-25 02:14:11,731 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:14:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:11 Caused by: Ice.CommunicatorDestroyedException: null
02:14:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:11 ... 7 common frames omitted
02:14:19 2024-10-25 02:14:19,261 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:14:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:19 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:19 Caused by: Ice.CommunicatorDestroyedException: null
02:14:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:19 ... 7 common frames omitted
02:14:20 2024-10-25 02:14:20,063 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:14:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:20 Caused by: Ice.CommunicatorDestroyedException: null
02:14:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:20 ... 7 common frames omitted
02:14:26 2024-10-25 02:14:26,499 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:14:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:26 Caused by: Ice.CommunicatorDestroyedException: null
02:14:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:26 ... 7 common frames omitted
02:14:27 2024-10-25 02:14:27,324 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:27 Caused by: Ice.CommunicatorDestroyedException: null
02:14:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:27 ... 7 common frames omitted
02:14:30 2024-10-25 02:14:30,872 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:14:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:30 Caused by: Ice.CommunicatorDestroyedException: null
02:14:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:30 ... 7 common frames omitted
02:14:31 2024-10-25 02:14:31,919 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:14:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:31 Caused by: Ice.CommunicatorDestroyedException: null
02:14:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:31 ... 7 common frames omitted
02:14:38 2024-10-25 02:14:38,785 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:14:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:38 Caused by: Ice.CommunicatorDestroyedException: null
02:14:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:38 ... 7 common frames omitted
02:14:39 2024-10-25 02:14:39,658 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:14:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:39 Caused by: Ice.CommunicatorDestroyedException: null
02:14:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:39 ... 7 common frames omitted
02:14:47 2024-10-25 02:14:47,379 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:14:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:47 Caused by: Ice.CommunicatorDestroyedException: null
02:14:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:47 ... 7 common frames omitted
02:14:48 2024-10-25 02:14:48,262 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:14:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:48 Caused by: Ice.CommunicatorDestroyedException: null
02:14:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:48 ... 7 common frames omitted
02:14:54 2024-10-25 02:14:54,805 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:14:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:54 Caused by: Ice.CommunicatorDestroyedException: null
02:14:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:54 ... 7 common frames omitted
02:14:55 2024-10-25 02:14:55,757 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:14:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:55 Caused by: Ice.CommunicatorDestroyedException: null
02:14:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:55 ... 7 common frames omitted
02:15:03 2024-10-25 02:15:03,405 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:15:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:03 Caused by: Ice.CommunicatorDestroyedException: null
02:15:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:03 ... 7 common frames omitted
02:15:04 2024-10-25 02:15:04,244 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:15:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:04 Caused by: Ice.CommunicatorDestroyedException: null
02:15:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:04 ... 7 common frames omitted
02:15:11 2024-10-25 02:15:11,205 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:15:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:11 Caused by: Ice.CommunicatorDestroyedException: null
02:15:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:11 ... 7 common frames omitted
02:15:12 2024-10-25 02:15:12,083 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:15:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:12 Caused by: Ice.CommunicatorDestroyedException: null
02:15:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:12 ... 7 common frames omitted
02:15:20 2024-10-25 02:15:20,943 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:15:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:20 Caused by: Ice.CommunicatorDestroyedException: null
02:15:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:20 ... 7 common frames omitted
02:15:21 2024-10-25 02:15:21,907 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:15:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:21 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:21 Caused by: Ice.CommunicatorDestroyedException: null
02:15:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:21 ... 7 common frames omitted
02:15:26 2024-10-25 02:15:26,614 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:15:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:26 Caused by: Ice.CommunicatorDestroyedException: null
02:15:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:26 ... 7 common frames omitted
02:15:27 2024-10-25 02:15:27,467 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:15:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:27 Caused by: Ice.CommunicatorDestroyedException: null
02:15:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:27 ... 7 common frames omitted
02:15:31 2024-10-25 02:15:31,286 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:15:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:31 Caused by: Ice.CommunicatorDestroyedException: null
02:15:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:31 ... 7 common frames omitted
02:15:32 2024-10-25 02:15:32,227 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:15:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:32 Caused by: Ice.CommunicatorDestroyedException: null
02:15:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:32 ... 7 common frames omitted
02:15:39 2024-10-25 02:15:39,913 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:15:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:39 Caused by: Ice.CommunicatorDestroyedException: null
02:15:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:39 ... 7 common frames omitted
02:15:40 2024-10-25 02:15:40,784 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:15:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:40 Caused by: Ice.CommunicatorDestroyedException: null
02:15:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:40 ... 7 common frames omitted
02:15:47 2024-10-25 02:15:47,419 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:15:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:47 Caused by: Ice.CommunicatorDestroyedException: null
02:15:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:47 ... 7 common frames omitted
02:15:47 ===============================================
02:15:47 OmeroJava.integration
02:15:47 Total tests run: 2589, Passes: 2587, Failures: 2, Skips: 0
02:15:47 ===============================================
02:15:48 2024-10-25 02:15:48,404 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:15:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:48 Caused by: Ice.CommunicatorDestroyedException: null
02:15:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:48 ... 7 common frames omitted
02:15:49 The tests failed.
02:15:50
02:15:50 BUILD SUCCESSFUL
02:15:50 Total time: 68 minutes 46 seconds
02:15:50 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -Dtestreports.dir=target/reports/integration
02:15:50 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
02:15:51 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
02:15:52 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:15:52 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:15:52
02:15:52 python-integration:
02:15:52 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration
02:16:02 ============================= test session starts ==============================
02:16:02 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
02:16:02 cachedir: .pytest_cache
02:16:02 django: version: 4.2.16, settings: omeroweb.settings (from ini)
02:16:02 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
02:16:02 configfile: pytest.ini
02:16:02 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
02:16:12 collecting ... collected 2061 items / 36 deselected / 2025 selected
02:16:20 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 FAILED [ 0%]
02:16:26 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 FAILED [ 0%]
02:16:28 test/integration/clitest/test_admin.py::TestAdmin::test_log PASSED [ 0%]
02:16:31 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_log PASSED [ 0%]
02:16:37 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 FAILED [ 0%]
02:16:43 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 FAILED [ 0%]
02:16:45 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Image] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Dataset] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Project] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Plate] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Screen] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Image] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Dataset] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Project] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Plate] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Screen] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Image] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Dataset] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Project] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Plate] PASSED [ 0%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Screen] PASSED [ 1%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Image] PASSED [ 1%]
02:16:46 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Dataset] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Project] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Plate] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Screen] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Image] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Dataset] PASSED [ 1%]
02:16:47 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Project] PASSED [ 1%]
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02:23:37 test/integration/clitest/test_download.py::TestDownload::testNonExistingImage PASSED [ 16%]
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02:23:57 test/integration/clitest/test_download.py::TestDownload::testValidPolicy PASSED [ 16%]
02:24:12 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image] PASSED [ 16%]
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02:24:26 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image] PASSED [ 17%]
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02:24:56 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,+write,+image,-plate] PASSED [ 17%]
02:25:10 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,-plate] PASSED [ 17%]
02:25:24 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,+plate] PASSED [ 17%]
02:25:26 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Image-] PASSED [ 17%]
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02:27:36 test/integration/clitest/test_group.py::TestGroup::testInfoInvalidGroup PASSED [ 19%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersNoArgument PASSED [ 19%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[id] PASSED [ 19%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[name] PASSED [ 19%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-id] PASSED [ 19%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-name] PASSED [ 20%]
02:27:36 test/integration/clitest/test_group.py::TestGroup::testListUsersInvalidArgument PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddDefaults PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rw----] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwr---] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwra--] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwrw--] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-private] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-only] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-annotate] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-write] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddSameNamefails PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testAddIgnoreExisting PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------id] PASSED [ 20%]
02:27:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------name] PASSED [ 20%]
02:27:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------id] PASSED [ 20%]
02:27:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------name] PASSED [ 20%]
02:27:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----id] PASSED [ 20%]
02:27:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----name] PASSED [ 20%]
02:27:43 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----id] PASSED [ 20%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----name] PASSED [ 20%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------id] PASSED [ 21%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------name] PASSED [ 21%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------id] PASSED [ 21%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------name] PASSED [ 21%]
02:27:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----id] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----name] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----id] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----name] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------id] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------name] PASSED [ 21%]
02:27:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------id] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------name] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----id] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----name] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----id] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----name] PASSED [ 21%]
02:27:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------id] PASSED [ 21%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------name] PASSED [ 21%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------id] PASSED [ 21%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------name] PASSED [ 21%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----id] PASSED [ 22%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----name] PASSED [ 22%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----id] PASSED [ 22%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----name] PASSED [ 22%]
02:27:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------id] PASSED [ 22%]
02:27:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------name] PASSED [ 22%]
02:27:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------id] PASSED [ 22%]
02:27:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------name] PASSED [ 22%]
02:27:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----id] PASSED [ 22%]
02:27:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----name] PASSED [ 22%]
02:27:52 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----id] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----name] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------id] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------name] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------id] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------name] PASSED [ 22%]
02:27:53 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----id] PASSED [ 22%]
02:27:54 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----name] PASSED [ 22%]
02:27:54 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----id] PASSED [ 22%]
02:27:54 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----name] PASSED [ 22%]
02:27:54 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------id] PASSED [ 23%]
02:27:54 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------name] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------id] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------name] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----id] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----name] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----id] PASSED [ 23%]
02:27:55 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----name] PASSED [ 23%]
02:27:56 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------id] PASSED [ 23%]
02:27:56 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------name] PASSED [ 23%]
02:27:56 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------id] PASSED [ 23%]
02:27:56 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------name] PASSED [ 23%]
02:27:56 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----id] PASSED [ 23%]
02:27:57 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----name] PASSED [ 23%]
02:27:57 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----id] PASSED [ 23%]
02:27:57 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----name] PASSED [ 23%]
02:27:59 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---id] PASSED [ 23%]
02:28:01 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---name] PASSED [ 23%]
02:28:02 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---id] PASSED [ 23%]
02:28:04 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---name] PASSED [ 23%]
02:28:06 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---id] PASSED [ 24%]
02:28:08 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---name] PASSED [ 24%]
02:28:10 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---id] PASSED [ 24%]
02:28:12 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---name] PASSED [ 24%]
02:28:14 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---id] PASSED [ 24%]
02:28:16 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---name] PASSED [ 24%]
02:28:18 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---id] PASSED [ 24%]
02:28:20 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---name] PASSED [ 24%]
02:28:21 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---id] PASSED [ 24%]
02:28:23 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---name] PASSED [ 24%]
02:28:25 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---id] PASSED [ 24%]
02:28:27 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---name] PASSED [ 24%]
02:28:29 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---id] PASSED [ 24%]
02:28:31 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---name] PASSED [ 24%]
02:28:33 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---id] PASSED [ 24%]
02:28:35 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---name] PASSED [ 24%]
02:28:37 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---id] PASSED [ 24%]
02:28:38 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---name] PASSED [ 24%]
02:28:40 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---id] PASSED [ 24%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---name] PASSED [ 24%]
02:28:44 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---id] PASSED [ 24%]
02:28:46 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---name] PASSED [ 25%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---id] PASSED [ 25%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---name] PASSED [ 25%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---id] PASSED [ 25%]
02:28:53 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---name] PASSED [ 25%]
02:28:55 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---id] PASSED [ 25%]
02:28:57 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---name] PASSED [ 25%]
02:28:59 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---id] PASSED [ 25%]
02:29:00 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---name] PASSED [ 25%]
02:29:03 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---id] PASSED [ 25%]
02:29:04 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---name] PASSED [ 25%]
02:29:06 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---id] PASSED [ 25%]
02:29:08 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---name] PASSED [ 25%]
02:29:10 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---id] PASSED [ 25%]
02:29:12 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---name] PASSED [ 25%]
02:29:14 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---id] PASSED [ 25%]
02:29:16 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---name] PASSED [ 25%]
02:29:18 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---id] PASSED [ 25%]
02:29:19 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---name] PASSED [ 25%]
02:29:21 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---id] PASSED [ 25%]
02:29:23 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---name] PASSED [ 26%]
02:29:25 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---id] PASSED [ 26%]
02:29:27 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---name] PASSED [ 26%]
02:29:34 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-id] PASSED [ 26%]
02:29:42 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-name] PASSED [ 26%]
02:29:49 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-id] PASSED [ 26%]
02:29:57 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-name] PASSED [ 26%]
02:30:04 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-id] PASSED [ 26%]
02:30:12 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-name] PASSED [ 26%]
02:30:19 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-id] PASSED [ 26%]
02:30:27 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-name] PASSED [ 26%]
02:30:41 test/integration/clitest/test_import.py::TestImport::testAutoClose PASSED [ 26%]
02:30:54 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-legacy] PASSED [ 26%]
02:31:07 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-underscore] PASSED [ 26%]
02:31:19 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[CRC-32-underscore] PASSED [ 26%]
02:31:32 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[File-Size-64-underscore] PASSED [ 26%]
02:31:45 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[MD5-128-underscore] PASSED [ 26%]
02:31:58 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-32-underscore] PASSED [ 26%]
02:32:10 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-128-underscore] PASSED [ 26%]
02:32:23 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[SHA1-160-underscore] PASSED [ 26%]
02:32:36 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-True] PASSED [ 27%]
02:32:48 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-False] PASSED [ 27%]
02:33:01 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-True] PASSED [ 27%]
02:33:14 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-False] PASSED [ 27%]
02:33:26 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-True] PASSED [ 27%]
02:33:39 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-False] PASSED [ 27%]
02:33:52 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-True] PASSED [ 27%]
02:34:05 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-False] PASSED [ 27%]
02:34:17 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-True] PASSED [ 27%]
02:34:30 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-False] PASSED [ 27%]
02:34:42 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-True] PASSED [ 27%]
02:34:55 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-False] PASSED [ 27%]
02:35:08 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Official] PASSED [ 27%]
02:35:20 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Deprecated] PASSED [ 27%]
02:35:33 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Official] PASSED [ 27%]
02:35:45 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Deprecated] PASSED [ 27%]
02:35:58 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Official] PASSED [ 27%]
02:36:10 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Deprecated] PASSED [ 27%]
02:36:23 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Official] PASSED [ 27%]
02:36:35 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Deprecated] PASSED [ 27%]
02:36:47 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Official] PASSED [ 28%]
02:37:00 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Deprecated] PASSED [ 28%]
02:37:13 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Official] PASSED [ 28%]
02:37:25 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Deprecated] PASSED [ 28%]
02:37:54 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-True] PASSED [ 28%]
02:38:21 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-False] PASSED [ 28%]
02:38:50 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-True] PASSED [ 28%]
02:39:17 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-False] PASSED [ 28%]
02:39:45 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-True] PASSED [ 28%]
02:40:11 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-False] PASSED [ 28%]
02:40:38 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-True] PASSED [ 28%]
02:41:04 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-False] PASSED [ 28%]
02:41:31 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-True] PASSED [ 28%]
02:41:56 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-False] PASSED [ 28%]
02:42:23 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-True] PASSED [ 28%]
02:42:49 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-False] PASSED [ 28%]
02:43:17 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-True] PASSED [ 28%]
02:43:43 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-False] PASSED [ 28%]
02:44:10 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-True] PASSED [ 28%]
02:44:37 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-False] PASSED [ 28%]
02:45:03 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--True] PASSED [ 28%]
02:45:30 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--False] PASSED [ 29%]
02:45:57 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-True] PASSED [ 29%]
02:46:23 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-False] PASSED [ 29%]
02:46:49 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-True] PASSED [ 29%]
02:47:15 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-False] PASSED [ 29%]
02:47:42 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-True] PASSED [ 29%]
02:48:07 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-False] PASSED [ 29%]
02:48:34 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-True] PASSED [ 29%]
02:49:00 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-False] PASSED [ 29%]
02:49:25 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--True] PASSED [ 29%]
02:49:51 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--False] PASSED [ 29%]
02:50:17 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-True] PASSED [ 29%]
02:50:42 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-False] PASSED [ 29%]
02:51:08 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-True] PASSED [ 29%]
02:51:33 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-False] PASSED [ 29%]
02:51:46 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-True] PASSED [ 29%]
02:51:59 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-False] PASSED [ 29%]
02:52:14 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-True] PASSED [ 29%]
02:52:27 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-False] PASSED [ 29%]
02:52:41 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--True] PASSED [ 29%]
02:52:54 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--False] PASSED [ 30%]
02:53:06 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[True] PASSED [ 30%]
02:53:19 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[False] PASSED [ 30%]
02:53:32 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[True] PASSED [ 30%]
02:53:45 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[False] PASSED [ 30%]
02:53:59 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-True] PASSED [ 30%]
02:54:12 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-False] PASSED [ 30%]
02:54:24 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-True] PASSED [ 30%]
02:54:37 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-False] PASSED [ 30%]
02:54:51 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--True] PASSED [ 30%]
02:55:03 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--False] PASSED [ 30%]
02:55:16 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-True] PASSED [ 30%]
02:55:29 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-False] PASSED [ 30%]
02:55:42 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[True] PASSED [ 30%]
02:55:55 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[False] PASSED [ 30%]
02:56:11 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-False] PASSED [ 30%]
02:56:28 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-True] PASSED [ 30%]
02:56:45 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-False] PASSED [ 30%]
02:57:01 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-True] PASSED [ 30%]
02:57:14 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Project] PASSED [ 30%]
02:57:25 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Plate] PASSED [ 31%]
02:57:37 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Image] PASSED [ 31%]
02:57:49 test/integration/clitest/test_import.py::TestImport::testBadModelTargetDiscriminator[Dataset] PASSED [ 31%]
02:58:02 test/integration/clitest/test_import.py::TestImport::testBadModelTargetDiscriminator[Screen] PASSED [ 31%]
02:58:15 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ALL] PASSED [ 31%]
02:58:27 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-TRACE] PASSED [ 31%]
02:58:39 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-DEBUG] PASSED [ 31%]
02:58:52 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-INFO] PASSED [ 31%]
02:59:05 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-WARN] PASSED [ 31%]
02:59:17 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ERROR] PASSED [ 31%]
02:59:29 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ALL] PASSED [ 31%]
02:59:42 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---TRACE] PASSED [ 31%]
02:59:54 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---DEBUG] PASSED [ 31%]
03:00:07 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---INFO] PASSED [ 31%]
03:00:19 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---WARN] PASSED [ 31%]
03:00:32 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ERROR] PASSED [ 31%]
03:00:45 test/integration/clitest/test_import.py::TestImport::testImportOutputDefault PASSED [ 31%]
03:00:58 test/integration/clitest/test_import.py::TestImport::testImportOutputYaml PASSED [ 31%]
03:01:23 test/integration/clitest/test_import.py::TestImport::testImportOutputLegacy PASSED [ 31%]
03:01:36 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[1] PASSED [ 31%]
03:01:49 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[2] PASSED [ 32%]
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03:02:17 test/integration/clitest/test_import.py::TestImport::testImportAsRoot PASSED [ 32%]
03:02:32 test/integration/clitest/test_import.py::TestImport::testImportMultiGroup PASSED [ 32%]
03:02:46 test/integration/clitest/test_import.py::TestImport::testImportAsRootMultiGroup PASSED [ 32%]
03:02:59 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image] PASSED [ 32%]
03:03:11 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-x] PASSED [ 32%]
03:03:24 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--description] PASSED [ 32%]
03:03:36 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-n] PASSED [ 32%]
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03:04:14 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--name] PASSED [ 32%]
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03:05:18 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--description] PASSED [ 32%]
03:05:31 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_description] PASSED [ 32%]
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03:06:22 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate-n--plate_description] PASSED [ 33%]
03:06:36 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--name] PASSED [ 33%]
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03:07:02 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--name--description] PASSED [ 33%]
03:07:14 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--name--plate_description] PASSED [ 33%]
03:07:27 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name] PASSED [ 33%]
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03:07:52 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name--description] PASSED [ 33%]
03:08:05 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name--plate_description] PASSED [ 33%]
03:08:17 test/integration/clitest/test_import.py::TestImport::testNoThumbnails[--no-thumbnails] PASSED [ 33%]
03:08:29 test/integration/clitest/test_import.py::TestImport::testNoThumbnails[--no_thumbnails] PASSED [ 33%]
03:08:42 test/integration/clitest/test_import.py::TestImport::testSkipArguments[] PASSED [ 33%]
03:08:45 test/integration/clitest/test_import.py::TestImport::testSkipArguments[all] PASSED [ 33%]
03:08:58 test/integration/clitest/test_import.py::TestImport::testSkipArguments[checksum] PASSED [ 33%]
03:09:10 test/integration/clitest/test_import.py::TestImport::testSkipArguments[minmax] PASSED [ 33%]
03:09:22 test/integration/clitest/test_import.py::TestImport::testSkipArguments[thumbnails] PASSED [ 33%]
03:09:25 test/integration/clitest/test_import.py::TestImport::testSkipArguments[upgrade] PASSED [ 33%]
03:09:37 test/integration/clitest/test_import.py::TestImport::testSymlinkImport PASSED [ 33%]
03:09:50 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Dataset-test.fake--d] PASSED [ 33%]
03:10:02 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] PASSED [ 33%]
03:10:14 test/integration/clitest/test_import.py::TestImport::testEncryption[] PASSED [ 34%]
03:10:27 test/integration/clitest/test_import.py::TestImport::testEncryption[--encrypted=false] PASSED [ 34%]
03:10:39 test/integration/clitest/test_import.py::TestImport::testEncryption[--encrypted=true] PASSED [ 34%]
03:10:39 test/integration/clitest/test_import.py::TestImport::testBulk PASSED [ 34%]
03:10:53 test/integration/clitest/test_import.py::TestImport::testParallelUpload PASSED [ 34%]
03:11:07 test/integration/clitest/test_import.py::TestImport::testParallelFileset PASSED [ 34%]
03:11:32 test/integration/clitest/test_import.py::TestImport::testBulkImportLogs PASSED [ 34%]
03:11:51 test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk PASSED [ 34%]
03:11:53 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[active] PASSED [ 34%]
03:11:53 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[discover] PASSED [ 34%]
03:11:53 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[create] PASSED [ 34%]
03:11:53 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[getdn] PASSED [ 34%]
03:11:53 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[setdn] PASSED [ 34%]
03:11:58 test/integration/clitest/test_metadata.py::TestMetadata::test_get_identifiers PASSED [ 34%]
03:12:02 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[False] PASSED [ 34%]
03:12:05 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[True] PASSED [ 34%]
03:12:08 test/integration/clitest/test_metadata.py::TestMetadata::test_get_roi_count[0] PASSED [ 34%]
03:12:12 test/integration/clitest/test_metadata.py::TestMetadata::test_get_roi_count[1] PASSED [ 34%]
03:12:16 test/integration/clitest/test_metadata.py::TestMetadata::test_get_original PASSED [ 34%]
03:12:20 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[False] PASSED [ 34%]
03:12:23 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[True] PASSED [ 35%]
03:12:26 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[False] PASSED [ 35%]
03:12:30 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[True] PASSED [ 35%]
03:12:33 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[False] PASSED [ 35%]
03:12:37 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[True] PASSED [ 35%]
03:12:42 test/integration/clitest/test_metadata.py::TestMetadataControl::test_original PASSED [ 35%]
03:12:45 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[False] PASSED [ 35%]
03:12:49 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[True] PASSED [ 35%]
03:12:53 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[False] PASSED [ 35%]
03:12:56 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[True] PASSED [ 35%]
03:13:00 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[False] PASSED [ 35%]
03:13:03 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[True] PASSED [ 35%]
03:13:07 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[False] PASSED [ 35%]
03:13:10 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[True] PASSED [ 35%]
03:13:14 test/integration/clitest/test_metadata.py::TestMetadataControl::test_pixelsize PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_create_from_file PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_create_from_args PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_linkage PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_linkage_via_variables PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_required[input0] PASSED [ 35%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_required[input1] PASSED [ 36%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_required[input2] PASSED [ 36%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_link_annotation PASSED [ 36%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_new_get_and_update PASSED [ 36%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_fail_leading_numbers_argument PASSED [ 36%]
03:13:16 test/integration/clitest/test_obj.py::TestObj::test_argument_with_letters_and_numbers PASSED [ 36%]
03:13:17 test/integration/clitest/test_obj.py::TestObj::test_new_and_get_obj PASSED [ 36%]
03:13:20 test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value PASSED [ 36%]
03:13:20 test/integration/clitest/test_obj.py::TestObj::test_get_unknown_and_empty_field PASSED [ 36%]
03:13:20 test/integration/clitest/test_obj.py::TestObj::test_get_fields PASSED [ 36%]
03:13:20 test/integration/clitest/test_obj.py::TestObj::test_get_list_field PASSED [ 36%]
03:13:21 test/integration/clitest/test_obj.py::TestObj::test_list_get PASSED [ 36%]
03:13:21 test/integration/clitest/test_obj.py::TestObj::test_map_mods PASSED [ 36%]
03:13:21 test/integration/clitest/test_obj.py::TestObj::test_nulling PASSED [ 36%]
03:13:21 test/integration/clitest/test_obj.py::TestObj::test_newlines PASSED [ 36%]
03:13:23 test/integration/clitest/test_pyramids.py::TestRemovePyramids::test_removepyramids_admin_only PASSED [ 36%]
03:13:25 test/integration/clitest/test_pyramids.py::TestRemovePyramidsRestrictedAdmin::test_removepyramids_restricted_admin PASSED [ 36%]
03:13:36 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_little_endian PASSED [ 36%]
03:13:42 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_imported_after_future PASSED [ 36%]
03:13:57 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_limit PASSED [ 36%]
03:14:14 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_not_valid_limit PASSED [ 36%]
03:14:14 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_manual SKIPPED [ 37%]
03:14:32 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove__pre_fs_pyramids PASSED [ 37%]
03:14:49 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_big_endian PASSED [ 37%]
03:15:21 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids PASSED [ 37%]
03:15:41 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_check_thumbnails PASSED [ 37%]
03:15:45 test/integration/clitest/test_script.py::TestScript::testList PASSED [ 37%]
03:15:58 test/integration/clitest/test_script.py::TestScript::testDemo PASSED [ 37%]
03:16:09 test/integration/clitest/test_script.py::TestScript::testFullSession PASSED [ 37%]
03:16:29 test/integration/clitest/test_script.py::TestScript::testReplace PASSED [ 37%]
03:16:30 test/integration/clitest/test_script.py::TestScript::testReplaceOfficial PASSED [ 37%]
03:16:38 test/integration/clitest/test_search.py::TestSearch::test_search_basic PASSED [ 37%]
03:16:44 test/integration/clitest/test_search.py::TestSearch::test_search_wildcard PASSED [ 37%]
03:16:50 test/integration/clitest/test_search.py::TestSearch::test_search_name_field PASSED [ 37%]
03:16:56 test/integration/clitest/test_search.py::TestSearch::test_search_description_field PASSED [ 37%]
03:17:02 test/integration/clitest/test_search.py::TestSearch::test_search_style PASSED [ 37%]
03:17:08 test/integration/clitest/test_search.py::TestSearch::test_search_ids_only PASSED [ 37%]
03:17:14 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data0] PASSED [ 37%]
03:17:20 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data1] PASSED [ 37%]
03:17:26 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data0] PASSED [ 37%]
03:17:32 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data1] PASSED [ 37%]
03:17:38 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data2] PASSED [ 38%]
03:17:44 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data3] PASSED [ 38%]
03:17:50 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data4] PASSED [ 38%]
03:17:56 test/integration/clitest/test_search.py::TestSearch::test_search_no_parse PASSED [ 38%]
03:17:58 test/integration/clitest/test_search.py::TestSearch::test_search_dataset_acquisition PASSED [ 38%]
03:18:04 test/integration/clitest/test_search.py::TestSearch::test_search_index_by_user PASSED [ 38%]
03:18:08 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True] PASSED [ 38%]
03:18:10 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False] PASSED [ 38%]
03:18:12 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True] PASSED [ 38%]
03:18:15 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False] PASSED [ 38%]
03:18:23 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----] PASSED [ 38%]
03:18:33 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---] PASSED [ 38%]
03:18:42 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--] PASSED [ 38%]
03:18:51 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--] PASSED [ 38%]
03:18:53 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True] PASSED [ 38%]
03:18:55 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False] PASSED [ 38%]
03:18:57 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True] PASSED [ 38%]
03:18:59 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False] PASSED [ 38%]
03:19:01 test/integration/clitest/test_sessions.py::TestSessions::testGroup PASSED [ 38%]
03:19:03 test/integration/clitest/test_sessions.py::TestSessions::testTimeout PASSED [ 38%]
03:19:03 test/integration/clitest/test_sessions.py::TestSessions::testFile PASSED [ 39%]
03:19:05 test/integration/clitest/test_sessions.py::TestSessions::testKey PASSED [ 39%]
03:19:07 test/integration/clitest/test_sessions.py::TestSessions::testWho[user] PASSED [ 39%]
03:19:08 test/integration/clitest/test_sessions.py::TestSessions::testWho[root] PASSED [ 39%]
03:19:10 test/integration/clitest/test_sessions.py::TestSessions::test_open PASSED [ 39%]
03:19:12 test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id PASSED [ 39%]
03:19:16 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo PASSED [ 39%]
03:19:20 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo PASSED [ 39%]
03:19:22 test/integration/clitest/test_sessions.py::TestSessions::test_close PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None-None] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None---name] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description-None] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description---name] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None-None] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None---name] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc-None] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc---name] PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testLoadTag PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testLoadTagset PASSED [ 39%]
03:19:24 test/integration/clitest/test_tag.py::TestTag::testLink[Image] PASSED [ 39%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLink[Dataset] PASSED [ 40%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLink[Project] PASSED [ 40%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLink[Screen] PASSED [ 40%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLink[Plate] PASSED [ 40%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidObject PASSED [ 40%]
03:19:25 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidTag PASSED [ 40%]
03:19:31 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-admin] PASSED [ 40%]
03:19:35 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-owner] PASSED [ 40%]
03:19:38 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-member] PASSED [ 40%]
03:19:42 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-admin] PASSED [ 40%]
03:19:46 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-owner] PASSED [ 40%]
03:19:50 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-member] PASSED [ 40%]
03:19:54 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-admin] PASSED [ 40%]
03:19:58 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-owner] PASSED [ 40%]
03:20:02 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-member] PASSED [ 40%]
03:20:05 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-admin] PASSED [ 40%]
03:20:09 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-owner] PASSED [ 40%]
03:20:13 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-member] PASSED [ 40%]
03:20:17 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-admin] PASSED [ 40%]
03:20:21 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-owner] PASSED [ 40%]
03:20:25 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-member] PASSED [ 40%]
03:20:29 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-admin] PASSED [ 41%]
03:20:33 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-owner] PASSED [ 41%]
03:20:37 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-member] PASSED [ 41%]
03:20:41 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-admin] PASSED [ 41%]
03:20:45 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-owner] PASSED [ 41%]
03:20:49 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-member] PASSED [ 41%]
03:20:53 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-admin] PASSED [ 41%]
03:20:57 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-owner] PASSED [ 41%]
03:21:01 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-member] PASSED [ 41%]
03:21:04 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-admin] PASSED [ 41%]
03:21:08 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-owner] PASSED [ 41%]
03:21:12 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-member] PASSED [ 41%]
03:21:16 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-admin] PASSED [ 41%]
03:21:20 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-owner] PASSED [ 41%]
03:21:24 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-member] PASSED [ 41%]
03:21:28 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-admin] PASSED [ 41%]
03:21:32 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-owner] PASSED [ 41%]
03:21:36 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-member] PASSED [ 41%]
03:21:40 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-admin] PASSED [ 41%]
03:21:44 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-owner] PASSED [ 41%]
03:21:48 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-member] PASSED [ 42%]
03:21:50 test/integration/clitest/test_tag.py::TestTagList::testList[] PASSED [ 42%]
03:21:50 test/integration/clitest/test_tag.py::TestTagList::testList[--nopage] PASSED [ 42%]
03:21:50 test/integration/clitest/test_tag.py::TestTagList::testListSets[] PASSED [ 42%]
03:21:50 test/integration/clitest/test_tag.py::TestTagList::testListSets[--nopage] PASSED [ 42%]
03:21:52 test/integration/clitest/test_upload.py::TestUpload::testUploadSingleFile PASSED [ 42%]
03:21:52 test/integration/clitest/test_upload.py::TestUpload::testUploadMultipleFiles PASSED [ 42%]
03:21:52 test/integration/clitest/test_upload.py::TestUpload::testUploadBadFile PASSED [ 42%]
03:22:07 test/integration/clitest/test_user.py::TestUser::testList[None-None] PASSED [ 42%]
03:22:17 test/integration/clitest/test_user.py::TestUser::testList[None-id] PASSED [ 42%]
03:22:26 test/integration/clitest/test_user.py::TestUser::testList[None-login] PASSED [ 42%]
03:22:36 test/integration/clitest/test_user.py::TestUser::testList[None-first-name] PASSED [ 42%]
03:22:46 test/integration/clitest/test_user.py::TestUser::testList[None-last-name] PASSED [ 42%]
03:22:55 test/integration/clitest/test_user.py::TestUser::testList[None-email] PASSED [ 42%]
03:23:05 test/integration/clitest/test_user.py::TestUser::testList[count-None] PASSED [ 42%]
03:23:15 test/integration/clitest/test_user.py::TestUser::testList[count-id] PASSED [ 42%]
03:23:24 test/integration/clitest/test_user.py::TestUser::testList[count-login] PASSED [ 42%]
03:23:34 test/integration/clitest/test_user.py::TestUser::testList[count-first-name] PASSED [ 42%]
03:23:44 test/integration/clitest/test_user.py::TestUser::testList[count-last-name] PASSED [ 42%]
03:23:53 test/integration/clitest/test_user.py::TestUser::testList[count-email] PASSED [ 42%]
03:24:03 test/integration/clitest/test_user.py::TestUser::testList[long-None] PASSED [ 43%]
03:24:13 test/integration/clitest/test_user.py::TestUser::testList[long-id] PASSED [ 43%]
03:24:23 test/integration/clitest/test_user.py::TestUser::testList[long-login] PASSED [ 43%]
03:24:32 test/integration/clitest/test_user.py::TestUser::testList[long-first-name] PASSED [ 43%]
03:24:42 test/integration/clitest/test_user.py::TestUser::testList[long-last-name] PASSED [ 43%]
03:24:51 test/integration/clitest/test_user.py::TestUser::testList[long-email] PASSED [ 43%]
03:24:55 test/integration/clitest/test_user.py::TestUser::testListWithStyles[None] PASSED [ 43%]
03:24:58 test/integration/clitest/test_user.py::TestUser::testListWithStyles[sql] PASSED [ 43%]
03:25:02 test/integration/clitest/test_user.py::TestUser::testListWithStyles[csv] PASSED [ 43%]
03:25:05 test/integration/clitest/test_user.py::TestUser::testListWithStyles[plain] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testListWithStyles[json] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoNoArgument PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoArgument[id] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoArgument[omeName] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-id] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-name] PASSED [ 43%]
03:25:08 test/integration/clitest/test_user.py::TestUser::testInfoInvalidUser PASSED [ 43%]
03:25:11 test/integration/clitest/test_user.py::TestUser::testListGroupsNoArgument PASSED [ 43%]
03:25:14 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[id] PASSED [ 43%]
03:25:17 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[omeName] PASSED [ 43%]
03:25:20 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-id] PASSED [ 44%]
03:25:22 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-name] PASSED [ 44%]
03:25:22 test/integration/clitest/test_user.py::TestUser::testListGroupsInvalidArgument PASSED [ 44%]
03:25:26 test/integration/clitest/test_user.py::TestUser::testEmail[None] PASSED [ 44%]
03:25:29 test/integration/clitest/test_user.py::TestUser::testEmail[-1] PASSED [ 44%]
03:25:32 test/integration/clitest/test_user.py::TestUser::testEmail[--one] PASSED [ 44%]
03:25:38 test/integration/clitest/test_user.py::TestUser::testPassword[True] PASSED [ 44%]
03:25:38 test/integration/clitest/test_user.py::TestUser::testPassword[False] PASSED [ 44%]
03:25:39 test/integration/clitest/test_user.py::TestUser::testAddAdminOnly PASSED [ 44%]
03:25:45 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---id] PASSED [ 44%]
03:25:47 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---name] PASSED [ 44%]
03:25:49 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---id] PASSED [ 44%]
03:25:51 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---name] PASSED [ 44%]
03:25:53 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---id] PASSED [ 44%]
03:25:55 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---name] PASSED [ 44%]
03:25:57 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---id] PASSED [ 44%]
03:25:59 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---name] PASSED [ 44%]
03:26:01 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---id] PASSED [ 44%]
03:26:03 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---name] PASSED [ 44%]
03:26:05 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---id] PASSED [ 44%]
03:26:07 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---name] PASSED [ 44%]
03:26:09 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---id] PASSED [ 45%]
03:26:11 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---name] PASSED [ 45%]
03:26:13 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---id] PASSED [ 45%]
03:26:14 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---name] PASSED [ 45%]
03:26:17 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---id] PASSED [ 45%]
03:26:18 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---name] PASSED [ 45%]
03:26:21 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---id] PASSED [ 45%]
03:26:22 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---name] PASSED [ 45%]
03:26:24 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---id] PASSED [ 45%]
03:26:26 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---name] PASSED [ 45%]
03:26:29 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---id] PASSED [ 45%]
03:26:30 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---name] PASSED [ 45%]
03:26:32 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---id] PASSED [ 45%]
03:26:34 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---name] PASSED [ 45%]
03:26:36 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---id] PASSED [ 45%]
03:26:38 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---name] PASSED [ 45%]
03:26:40 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---id] PASSED [ 45%]
03:26:42 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---name] PASSED [ 45%]
03:26:44 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---id] PASSED [ 45%]
03:26:46 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---name] PASSED [ 45%]
03:26:48 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---id] PASSED [ 46%]
03:26:50 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---name] PASSED [ 46%]
03:26:52 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---id] PASSED [ 46%]
03:26:54 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---name] PASSED [ 46%]
03:26:56 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---id] PASSED [ 46%]
03:26:58 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---name] PASSED [ 46%]
03:27:01 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---id] PASSED [ 46%]
03:27:02 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---name] PASSED [ 46%]
03:27:04 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---id] PASSED [ 46%]
03:27:06 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---name] PASSED [ 46%]
03:27:08 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---id] PASSED [ 46%]
03:27:10 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---name] PASSED [ 46%]
03:27:12 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---id] PASSED [ 46%]
03:27:14 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---name] PASSED [ 46%]
03:27:16 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---id] PASSED [ 46%]
03:27:18 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---name] PASSED [ 46%]
03:27:18 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None-None] PASSED [ 46%]
03:27:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None--m] PASSED [ 46%]
03:27:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None---middlename] PASSED [ 46%]
03:27:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e-None] PASSED [ 46%]
03:27:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e--m] PASSED [ 47%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e---middlename] PASSED [ 47%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email-None] PASSED [ 47%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email--m] PASSED [ 47%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email---middlename] PASSED [ 47%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None-None] PASSED [ 47%]
03:27:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None--m] PASSED [ 47%]
03:27:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None---middlename] PASSED [ 47%]
03:27:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e-None] PASSED [ 47%]
03:27:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e--m] PASSED [ 47%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e---middlename] PASSED [ 47%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email-None] PASSED [ 47%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email--m] PASSED [ 47%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email---middlename] PASSED [ 47%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None-None] PASSED [ 47%]
03:27:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None--m] PASSED [ 47%]
03:27:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None---middlename] PASSED [ 47%]
03:27:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e-None] PASSED [ 47%]
03:27:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e--m] PASSED [ 47%]
03:27:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e---middlename] PASSED [ 47%]
03:27:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email-None] PASSED [ 48%]
03:27:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email--m] PASSED [ 48%]
03:27:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email---middlename] PASSED [ 48%]
03:27:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None-None] PASSED [ 48%]
03:27:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None--m] PASSED [ 48%]
03:27:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None---middlename] PASSED [ 48%]
03:27:27 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e-None] PASSED [ 48%]
03:27:28 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e--m] PASSED [ 48%]
03:27:29 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e---middlename] PASSED [ 48%]
03:27:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email-None] PASSED [ 48%]
03:27:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email--m] PASSED [ 48%]
03:27:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email---middlename] PASSED [ 48%]
03:27:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None-None] PASSED [ 48%]
03:27:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None--m] PASSED [ 48%]
03:27:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None---middlename] PASSED [ 48%]
03:27:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e-None] PASSED [ 48%]
03:27:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e--m] PASSED [ 48%]
03:27:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e---middlename] PASSED [ 48%]
03:27:37 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email-None] PASSED [ 48%]
03:27:37 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email--m] PASSED [ 48%]
03:27:38 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email---middlename] PASSED [ 48%]
03:27:39 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None-None] PASSED [ 49%]
03:27:40 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None--m] PASSED [ 49%]
03:27:41 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None---middlename] PASSED [ 49%]
03:27:42 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e-None] PASSED [ 49%]
03:27:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e--m] PASSED [ 49%]
03:27:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e---middlename] PASSED [ 49%]
03:27:44 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email-None] PASSED [ 49%]
03:27:45 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email--m] PASSED [ 49%]
03:27:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email---middlename] PASSED [ 49%]
03:27:47 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None-None] PASSED [ 49%]
03:27:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None--m] PASSED [ 49%]
03:27:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None---middlename] PASSED [ 49%]
03:27:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e-None] PASSED [ 49%]
03:27:50 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e--m] PASSED [ 49%]
03:27:51 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e---middlename] PASSED [ 49%]
03:27:52 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email-None] PASSED [ 49%]
03:27:53 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email--m] PASSED [ 49%]
03:27:54 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email---middlename] PASSED [ 49%]
03:27:55 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None-None] PASSED [ 49%]
03:27:56 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None--m] PASSED [ 49%]
03:27:57 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None---middlename] PASSED [ 50%]
03:27:58 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e-None] PASSED [ 50%]
03:27:58 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e--m] PASSED [ 50%]
03:27:59 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e---middlename] PASSED [ 50%]
03:28:01 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email-None] PASSED [ 50%]
03:28:01 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email--m] PASSED [ 50%]
03:28:02 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email---middlename] PASSED [ 50%]
03:28:03 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None-None] PASSED [ 50%]
03:28:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None--m] PASSED [ 50%]
03:28:05 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None---middlename] PASSED [ 50%]
03:28:06 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e-None] PASSED [ 50%]
03:28:07 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e--m] PASSED [ 50%]
03:28:09 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e---middlename] PASSED [ 50%]
03:28:09 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email-None] PASSED [ 50%]
03:28:10 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email--m] PASSED [ 50%]
03:28:11 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email---middlename] PASSED [ 50%]
03:28:12 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[id] PASSED [ 50%]
03:28:12 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[name] PASSED [ 50%]
03:28:13 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-id] PASSED [ 50%]
03:28:14 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-name] PASSED [ 50%]
03:28:14 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True-None] PASSED [ 51%]
03:28:15 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True--P] PASSED [ 51%]
03:28:15 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True---userpassword] PASSED [ 51%]
03:28:16 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False-None] PASSED [ 51%]
03:28:17 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False--P] PASSED [ 51%]
03:28:17 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False---userpassword] PASSED [ 51%]
03:28:17 test/integration/clitest/test_user.py::TestUserRoot::testAddNoPassword PASSED [ 51%]
03:28:26 test/integration/clitest/test_user.py::TestUserRoot::testPassword[True] PASSED [ 51%]
03:28:28 test/integration/clitest/test_user.py::TestUserRoot::testPassword[False] PASSED [ 51%]
03:28:30 test/integration/fstest/test_rename.py::TestRename::test_dir PASSED [ 51%]
03:28:39 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data0] PASSED [ 51%]
03:28:48 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data1] PASSED [ 51%]
03:28:57 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data2] PASSED [ 51%]
03:29:06 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data3] PASSED [ 51%]
03:29:16 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data4] PASSED [ 51%]
03:29:21 test/integration/fstest/test_rename.py::TestRename::test_rename_annotation PASSED [ 51%]
03:29:22 test/integration/fstest/test_rename.py::TestRename::test_prep_and_delete PASSED [ 51%]
03:29:27 test/integration/gatewaytest/test_annotation.py::testSameOwner PASSED [ 51%]
03:29:28 test/integration/gatewaytest/test_annotation.py::testCommentAnnotation PASSED [ 51%]
03:29:29 test/integration/gatewaytest/test_annotation.py::testNonDefGroupAnnotation PASSED [ 51%]
03:29:31 test/integration/gatewaytest/test_annotation.py::testTimestampAnnotation PASSED [ 52%]
03:29:32 test/integration/gatewaytest/test_annotation.py::testBooleanAnnotation PASSED [ 52%]
03:29:34 test/integration/gatewaytest/test_annotation.py::testLongAnnotation PASSED [ 52%]
03:29:35 test/integration/gatewaytest/test_annotation.py::testMapAnnotation PASSED [ 52%]
03:29:37 test/integration/gatewaytest/test_annotation.py::testDualLinkedAnnotation PASSED [ 52%]
03:29:38 test/integration/gatewaytest/test_annotation.py::testListAnnotations PASSED [ 52%]
03:29:40 test/integration/gatewaytest/test_annotation.py::testFileAnnotation PASSED [ 52%]
03:29:41 test/integration/gatewaytest/test_annotation.py::testFileAnnotationNoName PASSED [ 52%]
03:29:44 test/integration/gatewaytest/test_annotation.py::testFileAnnotationSpeed PASSED [ 52%]
03:29:45 test/integration/gatewaytest/test_annotation.py::testFileAnnNonDefaultGroup PASSED [ 52%]
03:29:47 test/integration/gatewaytest/test_annotation.py::testUnlinkAnnotation PASSED [ 52%]
03:29:48 test/integration/gatewaytest/test_annotation.py::testAnnotationCount PASSED [ 52%]
03:29:49 test/integration/gatewaytest/test_chgrp.py::testImageChgrp PASSED [ 52%]
03:29:51 test/integration/gatewaytest/test_chgrp.py::testDatasetChgrp PASSED [ 52%]
03:29:53 test/integration/gatewaytest/test_chgrp.py::testPDIChgrp PASSED [ 52%]
03:29:54 test/integration/gatewaytest/test_chgrp.py::testTwoDatasetsChgrpToProject PASSED [ 52%]
03:29:56 test/integration/gatewaytest/test_chgrp.py::testMultiDatasetDoAll PASSED [ 52%]
03:29:58 test/integration/gatewaytest/test_chmod.py::TestChmodGroup::testChmod PASSED [ 52%]
03:30:08 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadOnly PASSED [ 52%]
03:30:10 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadAnnotate PASSED [ 52%]
03:30:11 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testGroupMinusOne PASSED [ 52%]
03:30:13 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadWrite PASSED [ 53%]
03:30:15 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testDelete8723 PASSED [ 53%]
03:30:18 test/integration/gatewaytest/test_chmod.py::TestManualCreateEdit::testReadOnly PASSED [ 53%]
03:30:20 test/integration/gatewaytest/test_chmod.py::Test8800::testWithBlitzWrappers PASSED [ 53%]
03:30:21 test/integration/gatewaytest/test_chmod.py::Test8800::testWithoutWrappers PASSED [ 53%]
03:30:25 test/integration/gatewaytest/test_chmod.py::TestDefaultSetup::testAuthorCanEdit PASSED [ 53%]
03:30:32 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_project PASSED [ 53%]
03:30:37 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_pdi PASSED [ 53%]
03:30:40 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[foo] PASSED [ 53%]
03:30:42 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[False] PASSED [ 53%]
03:30:44 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[false] PASSED [ 53%]
03:30:46 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[True] PASSED [ 53%]
03:30:48 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[true] PASSED [ 53%]
03:30:51 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[] PASSED [ 53%]
03:30:54 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[None] PASSED [ 53%]
03:31:02 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMultiProcessSession PASSED [ 53%]
03:33:11 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose ERROR [ 53%]
03:35:21 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects ERROR [ 53%]
03:35:21 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testCloseSession PASSED [ 53%]
03:35:21 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMiscellaneous PASSED [ 53%]
03:35:22 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClient PASSED [ 54%]
03:35:23 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientNoSessionWithIdentity PASSED [ 54%]
03:35:23 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientSessionWithoutIdentity PASSED [ 54%]
03:35:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSessionId PASSED [ 54%]
03:35:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectWithSessionId PASSED [ 54%]
03:35:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithSecureClient PASSED [ 54%]
03:35:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUnsecureClient PASSED [ 54%]
03:35:24 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[None] PASSED [ 54%]
03:35:25 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[False] PASSED [ 54%]
03:35:25 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[True] PASSED [ 54%]
03:35:25 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureMisMatch PASSED [ 54%]
03:35:25 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testHost PASSED [ 54%]
03:35:27 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsUnwrapped PASSED [ 54%]
03:35:27 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjects PASSED [ 54%]
03:35:27 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsWait PASSED [ 54%]
03:35:27 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsDryRun PASSED [ 54%]
03:35:27 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteAnnotatedFileAnnotation PASSED [ 54%]
03:35:28 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect PASSED [ 54%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testCountArchivedFiles PASSED [ 54%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testCountFilesetFiles PASSED [ 54%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testCountImportedImageFiles PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfo PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfoWithAnnotations PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFiles PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFilesInfo PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfo PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoWithAnnotations PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultiple PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultipleWithAnnotations PASSED [ 55%]
03:35:30 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFileset PASSED [ 55%]
03:35:31 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFilePaths PASSED [ 55%]
03:35:32 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountArchivedFiles PASSED [ 55%]
03:35:32 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountFilesetFiles PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountImportedImageFiles PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedFilesInfo PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFiles PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFilesInfo PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfo PASSED [ 55%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfoMultiple PASSED [ 56%]
03:35:33 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFileset PASSED [ 56%]
03:35:34 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFilePaths PASSED [ 56%]
03:35:35 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteAnnotation PASSED [ 56%]
03:35:36 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteImage PASSED [ 56%]
03:35:38 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testIllegalObjTypeInt PASSED [ 56%]
03:35:38 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeUnicode PASSED [ 56%]
03:35:38 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeString PASSED [ 56%]
03:35:38 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindProject PASSED [ 56%]
03:37:49 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter ERROR [ 56%]
03:37:50 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindAnnotation PASSED [ 56%]
03:37:54 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testSearchObjects PASSED [ 56%]
03:37:54 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListProjects PASSED [ 56%]
03:37:54 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testPagination PASSED [ 56%]
03:37:54 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetDatasetsByProject PASSED [ 56%]
03:37:59 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[True] PASSED [ 56%]
03:38:02 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[False] PASSED [ 56%]
03:38:02 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListColleagues PASSED [ 56%]
03:38:05 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testFindExperimenterWithGroups PASSED [ 56%]
03:38:10 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[True] PASSED [ 56%]
03:38:15 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[False] PASSED [ 56%]
03:38:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimenter PASSED [ 57%]
03:40:25 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations ERROR [ 57%]
03:42:35 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage ERROR [ 57%]
03:44:47 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] ERROR [ 57%]
03:46:58 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] ERROR [ 57%]
03:49:09 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] ERROR [ 57%]
03:51:20 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] ERROR [ 57%]
03:51:20 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetProject PASSED [ 57%]
03:53:31 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal ERROR [ 57%]
03:53:32 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-True] PASSED [ 57%]
03:53:32 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-False] PASSED [ 57%]
03:53:33 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-True] PASSED [ 57%]
03:53:33 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-False] PASSED [ 57%]
03:53:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testOrderById PASSED [ 57%]
03:53:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] FAILED [ 57%]
03:53:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] FAILED [ 57%]
03:53:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] FAILED [ 57%]
03:53:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] FAILED [ 57%]
03:53:36 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] FAILED [ 57%]
03:53:39 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsLeader PASSED [ 57%]
03:53:40 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsMember PASSED [ 58%]
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03:53:44 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated PASSED [ 58%]
03:53:46 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated PASSED [ 58%]
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05:49:42 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testExperimenterWrapper PASSED [ 63%]
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05:51:54 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOther PASSED [ 63%]
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05:52:59 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Project2Datasets] PASSED [ 65%]
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05:53:33 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[None] PASSED [ 65%]
05:53:46 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:53:58 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/mapr/gene] PASSED [ 65%]
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05:55:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-True] PASSED [ 66%]
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05:55:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-True] PASSED [ 66%]
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05:55:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[json] PASSED [ 66%]
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05:55:29 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition PASSED [ 66%]
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05:56:43 test/integration/scriptstest/test_ping.py::TestPing::testProcessorExpires PASSED [ 67%]
05:56:44 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetJob PASSED [ 67%]
05:56:45 test/integration/scriptstest/test_ping.py::TestPing::testProcessorStop PASSED [ 67%]
05:56:46 test/integration/scriptstest/test_ping.py::TestPing::testProcessorDetach PASSED [ 67%]
05:57:04 test/integration/scriptstest/test_rand.py::TestRand::testRand PASSED [ 67%]
05:57:06 test/integration/scriptstest/test_repo.py::TestScriptRepo::testScriptRepo PASSED [ 67%]
05:57:07 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetOfficialScripts PASSED [ 67%]
05:57:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetUserScripts PASSED [ 67%]
05:57:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testCantUndulyLoadScriptRepoFromUuid PASSED [ 67%]
05:57:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testMultipleScriptPathsNotSupported PASSED [ 68%]
05:57:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaOfficialScriptShowsUpInRepo PASSED [ 68%]
05:57:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaNonOfficialScriptDoesntShowUpInRepo PASSED [ 68%]
05:57:22 test/integration/scriptstest/test_roi_handling_utils.py::TestRoiHandlingUtils::test_get_line_data PASSED [ 68%]
05:57:29 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_split_image PASSED [ 68%]
05:57:32 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_to_image PASSED [ 68%]
05:57:34 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_convert_numpy_array PASSED [ 68%]
05:57:38 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0f0693fa60>
05:57:38 Traceback (most recent call last):
05:57:38 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:57:38 self.close()
05:57:38 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:57:38 unlink(self.name)
05:57:38 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmptk8jksdn.tiff'
05:57:38 PASSED [ 68%]
05:57:40 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0f0693fa60>
05:57:40 Traceback (most recent call last):
05:57:40 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:57:40 self.close()
05:57:40 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:57:40 unlink(self.name)
05:57:40 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp908amuq1.foo'
05:57:40 PASSED [ 68%]
05:57:43 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-tiff] PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-foo] PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[] PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[text/x-python] PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_calc_sha1 PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_file PASSED [ 68%]
05:57:46 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_file PASSED [ 68%]
05:57:48 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_get_objects PASSED [ 68%]
05:57:51 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_plane PASSED [ 68%]
05:57:53 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane_by_row PASSED [ 68%]
05:57:56 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane PASSED [ 68%]
05:57:59 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testCreateAllColumns_4_4_5 PASSED [ 68%]
05:58:00 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testAllColumns_4_4_5 PASSED [ 69%]
05:58:02 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testMetadataException PASSED [ 69%]
05:58:04 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testCreateAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
05:58:05 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
05:58:08 test/integration/tablestest/test_populate_metadata.py::TestPopulateMetadata::testPopulateMetadataPlate PASSED [ 69%]
05:58:10 test/integration/tablestest/test_service.py::TestTables::testBlankTable PASSED [ 69%]
05:58:10 test/integration/tablestest/test_service.py::TestTables::testUpdate PASSED [ 69%]
05:58:10 test/integration/tablestest/test_service.py::TestTables::testTicket2175 PASSED [ 69%]
05:58:10 test/integration/tablestest/test_service.py::TestTables::testMask PASSED [ 69%]
05:58:10 test/integration/tablestest/test_service.py::TestTables::test2855MetadataMethods PASSED [ 69%]
05:58:15 test/integration/tablestest/test_service.py::TestTables::test2910 PASSED [ 69%]
05:58:18 test/integration/tablestest/test_service.py::TestTables::testDelete PASSED [ 69%]
05:58:18 test/integration/tablestest/test_service.py::TestTables::test3714GetWhereListVars PASSED [ 69%]
05:58:18 test/integration/tablestest/test_service.py::TestTables::test4000TableRead PASSED [ 69%]
05:58:20 test/integration/tablestest/test_service.py::TestTables::testCallContext PASSED [ 69%]
05:58:20 test/integration/tablestest/test_service.py::TestTables::testGetHeaders PASSED [ 69%]
05:58:24 test/integration/tablestest/test_service.py::TestTables::test10049openTableUnreadable PASSED [ 69%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::test9971checkStringLength PASSED [ 69%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testArrayColumn PASSED [ 69%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testArrayColumnSize1 PASSED [ 69%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable PASSED [ 70%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::test10431uninitialisedTableReadWrite PASSED [ 70%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::test12606fileSizeCheck PASSED [ 70%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testCantWriteInternalMetadata[data0] PASSED [ 70%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testCantWriteInternalMetadata[data1] PASSED [ 70%]
05:58:25 test/integration/tablestest/test_service.py::TestTables::testCanWriteAlmostInternalMetadata[data0] PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testCanWriteAlmostInternalMetadata[data1] PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testCanReadInternalMetadata PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testColumnSpaceNames PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersSlice PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersReadCoordinates PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersRead PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testSliceOrdering PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testReadCoordinatesOrdering PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testSliceEmptyInput PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testReadCoordinatesInvalidInput PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testReadInvalidInput PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testSliceInvalidInput PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testReadStartEnd PASSED [ 70%]
05:58:26 test/integration/tablestest/test_service.py::TestTables::testReadStartGreaterThanEnd PASSED [ 70%]
05:58:27 test/integration/tablestest/test_service.py::TestTables::testAddData PASSED [ 71%]
05:58:27 test/integration/tablestest/test_service.py::TestTables::testUpdateFirstRow PASSED [ 71%]
05:58:27 test/integration/tablestest/test_service.py::TestTables::testUpdateMultipleRows PASSED [ 71%]
05:58:27 test/integration/tablestest/test_service.py::TestTables::testUpdateAllows PASSED [ 71%]
05:58:27 test/integration/tablestest/test_service.py::TestTables::testCannotUpdateOutOfRange PASSED [ 71%]
05:58:30 test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata PASSED [ 71%]
05:58:36 test/integration/test_admin.py::TestAdmin::testGetGroup PASSED [ 71%]
05:58:36 test/integration/test_admin.py::TestAdmin::testSetGroup PASSED [ 71%]
05:58:39 test/integration/test_admin.py::TestAdmin::testChangePassword PASSED [ 71%]
05:58:39 test/integration/test_admin.py::TestAdmin::testGetEventContext4011 PASSED [ 71%]
05:58:41 test/integration/test_admin.py::TestAdmin::testUserRoles4056 PASSED [ 71%]
05:58:43 test/integration/test_admin.py::TestAdmin::testSetSecurityPassword PASSED [ 71%]
05:58:46 test/integration/test_annotation.py::TestFigureExportScripts::testAddAnnotations PASSED [ 71%]
05:58:57 test/integration/test_annotationPermissions.py::TestPrivateGroup::testAddTag PASSED [ 71%]
05:58:58 test/integration/test_annotationPermissions.py::TestPrivateGroup::testReadTag PASSED [ 71%]
05:58:58 test/integration/test_annotationPermissions.py::TestPrivateGroup::testRemoveTag PASSED [ 71%]
05:59:09 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testAddTag PASSED [ 71%]
05:59:10 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testReadTag PASSED [ 71%]
05:59:11 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testRemoveTag PASSED [ 71%]
05:59:22 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testAddTag PASSED [ 71%]
05:59:23 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testReadTag PASSED [ 72%]
05:59:23 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testRemoveTag PASSED [ 72%]
05:59:36 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[root] PASSED [ 72%]
05:59:36 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[admin] PASSED [ 72%]
05:59:37 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[owner] PASSED [ 72%]
05:59:48 test/integration/test_chgrp.py::TestChgrp::testChgrpImportedImage PASSED [ 72%]
05:59:51 test/integration/test_chgrp.py::TestChgrp::testChgrpImage PASSED [ 72%]
05:59:53 test/integration/test_chgrp.py::TestChgrp::testChgrpPDI PASSED [ 72%]
06:00:02 test/integration/test_chgrp.py::TestChgrp::testChgrpRdef7825 PASSED [ 72%]
06:00:08 test/integration/test_chgrp.py::TestChgrp::testChgrpOneImageFilesetErr PASSED [ 72%]
06:00:14 test/integration/test_chgrp.py::TestChgrp::testChgrpAllImagesFilesetOK PASSED [ 72%]
06:00:21 test/integration/test_chgrp.py::TestChgrp::testChgrpAllImagesFilesetTwoCommandsErr PASSED [ 72%]
06:00:27 test/integration/test_chgrp.py::TestChgrp::testChgrpOneDatasetFilesetErr PASSED [ 72%]
06:00:32 test/integration/test_chgrp.py::TestChgrp::testChgrpAllDatasetsFilesetOK PASSED [ 72%]
06:00:38 test/integration/test_chgrp.py::TestChgrp::testChgrpOneDatasetFilesetOK PASSED [ 72%]
06:00:48 test/integration/test_chgrp.py::TestChgrp::testChgrpImagesTwoFilesetsErr PASSED [ 72%]
06:01:00 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetTwoFilesetsErr PASSED [ 72%]
06:01:07 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetCheckFsGroup PASSED [ 72%]
06:01:13 test/integration/test_chgrp.py::TestChgrp::testChgrpFilesetOK PASSED [ 72%]
06:01:18 test/integration/test_chgrp.py::TestChgrp::testChgrp11000 PASSED [ 72%]
06:01:21 test/integration/test_chgrp.py::TestChgrp::testChgrp11109 PASSED [ 72%]
06:01:23 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetWithImage PASSED [ 73%]
06:01:26 test/integration/test_chgrp.py::TestChgrp::testChgrpPDIReverseLinkOrder PASSED [ 73%]
06:01:28 test/integration/test_chgrp.py::TestChgrp::testChgrpTwoDatasetsLinkedToSingleImageDefault PASSED [ 73%]
06:01:31 test/integration/test_chgrp.py::TestChgrp::testChgrpTwoDatasetsLinkedToSingleImageHard PASSED [ 73%]
06:01:33 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectWithDatasetLinkedToImageWithOtherDatasetDefault PASSED [ 73%]
06:01:35 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectWithDatasetLinkedToImageWithOtherDatasetHard PASSED [ 73%]
06:01:38 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetWithImageLinkedToTwoProjects PASSED [ 73%]
06:01:40 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetAndImageDefault PASSED [ 73%]
06:01:43 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetAndImageHard PASSED [ 73%]
06:01:45 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetDefault PASSED [ 73%]
06:01:48 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetHard PASSED [ 73%]
06:01:50 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToTwoDatasetsAndImage PASSED [ 73%]
06:02:07 test/integration/test_chgrp.py::TestChgrp::testIntergroupLinks PASSED [ 73%]
06:02:17 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpImageToTargetDataset PASSED [ 73%]
06:02:24 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpMifImagesToTargetDataset PASSED [ 73%]
06:02:31 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpImageToTargetDatasetAndBackNoDS PASSED [ 73%]
06:02:37 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpImageToTargetDatasetAndBackDS PASSED [ 73%]
06:02:39 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpDatasetToTargetProject[user] PASSED [ 73%]
06:02:42 test/integration/test_chgrp.py::TestChgrpTarget::testChgrpDatasetToTargetProject[admin] PASSED [ 73%]
06:02:49 test/integration/test_chmod.py::TestChmodEasy::test_chmod_rw_rwr PASSED [ 73%]
06:02:58 test/integration/test_chown.py::TestChown::test_chown_project PASSED [ 74%]
06:03:03 test/integration/test_chown.py::TestChown::test_chown_pdi PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testHostConstructor PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testEmptyInitializationDataConstructor PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testInitializationDataConstructor PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testMainArgsConstructor PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testMapConstructor PASSED [ 74%]
06:03:05 test/integration/test_client_ctors.py::TestClientConstructors::testMainArgsGetsIcePrefix PASSED [ 74%]
06:03:06 test/integration/test_client_ctors.py::TestClientConstructors::testMainArgsGetsIceConfig PASSED [ 74%]
06:03:09 test/integration/test_client_ctors.py::TestClientConstructors::testTwoDifferentHosts PASSED [ 74%]
06:03:09 test/integration/test_client_ctors.py::TestClientConstructors::testPorts PASSED [ 74%]
06:03:09 test/integration/test_client_ctors.py::TestClientConstructors::testBlockSize PASSED [ 74%]
06:03:09 test/integration/test_client_ctors.py::TestClientConstructors::testPythonCtorRepair PASSED [ 74%]
06:03:14 test/integration/test_clientusage.py::TestClientUsage::testClientClosedAutomatically PASSED [ 74%]
06:03:17 test/integration/test_clientusage.py::TestClientUsage::testClientClosedManually PASSED [ 74%]
06:03:19 test/integration/test_clientusage.py::TestClientUsage::testUseSharedMemory PASSED [ 74%]
06:03:21 test/integration/test_clientusage.py::TestClientUsage::testCreateInsecureClientTicket2099 PASSED [ 74%]
06:03:21 test/integration/test_clientusage.py::TestClientUsage::testGetStatefulServices PASSED [ 74%]
06:03:27 test/integration/test_cmdcallback.py::TestCmdCallback::testTimingFinishesOnLatch PASSED [ 74%]
06:03:31 test/integration/test_cmdcallback.py::TestCmdCallback::testTimingFinishesOnBlock PASSED [ 74%]
06:03:35 test/integration/test_cmdcallback.py::TestCmdCallback::testTimingFinishesOnLoop PASSED [ 75%]
06:03:37 test/integration/test_cmdcallback.py::TestCmdCallback::testDoNothingFinishesOnLatch PASSED [ 75%]
06:03:39 test/integration/test_cmdcallback.py::TestCmdCallback::testDoNothingFinishesOnLoop PASSED [ 75%]
06:03:41 test/integration/test_cmdcallback.py::TestCmdCallback::testDoAllTimingFinishesOnLoop PASSED [ 75%]
06:03:44 test/integration/test_counts.py::TestCounts::testBasicUsage PASSED [ 75%]
06:03:46 test/integration/test_delete.py::TestDelete::testBasicUsage PASSED [ 75%]
06:03:47 test/integration/test_delete.py::TestDelete::testDeleteMany PASSED [ 75%]
06:03:47 test/integration/test_delete.py::TestDelete::testDeleteProjectWithoutContent PASSED [ 75%]
06:03:47 test/integration/test_delete.py::TestDelete::testCheckIfDeleted PASSED [ 75%]
06:03:48 test/integration/test_delete.py::TestDelete::testCheckIfDeleted2 PASSED [ 75%]
06:03:49 test/integration/test_delete.py::TestDelete::testOddMessage PASSED [ 75%]
06:03:49 test/integration/test_delete.py::TestDelete::testDeleteComment PASSED [ 75%]
06:03:51 test/integration/test_delete.py::TestDelete::test3639 PASSED [ 75%]
06:03:51 test/integration/test_delete.py::TestDelete::test5793 PASSED [ 75%]
06:03:51 test/integration/test_delete.py::TestDelete::test7314 PASSED [ 75%]
06:03:55 test/integration/test_delete.py::TestDelete::testDeleteOneDatasetFilesetErr PASSED [ 75%]
06:03:59 test/integration/test_delete.py::TestDelete::testDeleteOneImageFilesetErr PASSED [ 75%]
06:04:02 test/integration/test_delete.py::TestDelete::testDeleteDatasetFilesetOK PASSED [ 75%]
06:04:06 test/integration/test_delete.py::TestDelete::testDeleteAllDatasetsFilesetOK PASSED [ 75%]
06:04:09 test/integration/test_delete.py::TestDelete::testDeleteAllImagesFilesetOK PASSED [ 75%]
06:04:12 test/integration/test_delete.py::TestDelete::testDeleteFilesetOK PASSED [ 76%]
06:04:19 test/integration/test_delete.py::TestDelete::testDeleteImagesTwoFilesetsErr PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteDatasetTwoFilesetsErr PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteProjectWithOneEmptyDataset PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteProjectWithEmptyDatasetLinkedToAnotherProjectDefault PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteProjectWithEmptyDatasetLinkedToAnotherProjectHard PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteProjectWithDatasetLinkedToAnotherProject PASSED [ 76%]
06:04:29 test/integration/test_delete.py::TestDelete::testDeleteDatasetLinkedToTwoProjects PASSED [ 76%]
06:04:30 test/integration/test_delete.py::TestDelete::testDeleteDatasetWithImageLinkedToAnotherDatasetDefault PASSED [ 76%]
06:04:30 test/integration/test_delete.py::TestDelete::testDeleteDatasetWithImageLinkedToAnotherDatasetHard PASSED [ 76%]
06:04:30 test/integration/test_delete.py::TestDelete::testStepsDuringDelete PASSED [ 76%]
06:04:33 test/integration/test_exporter.py::TestExporter::testBasic PASSED [ 76%]
06:04:37 test/integration/test_exporter.py::TestExporter::test6713 PASSED [ 76%]
06:04:39 test/integration/test_files.py::TestFiles::testUploadDownload PASSED [ 76%]
06:04:40 test/integration/test_files.py::TestFiles::test_download_null_size PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testValuesRegex[data0] PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testValuesRegex[data1] PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testValuesRegex[data2] PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testValuesRegex[data3] PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testDefaults PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testRootDefaults PASSED [ 76%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testClientDefaults PASSED [ 77%]
06:04:42 test/integration/test_iconfig.py::TestConfig::testClientValues PASSED [ 77%]
06:04:44 test/integration/test_icontainer.py::TestIContainer::testFindAnnotations PASSED [ 77%]
06:04:49 test/integration/test_icontainer.py::TestIContainer::testFindAndCountAnnotationsForSharedData PASSED [ 77%]
06:04:49 test/integration/test_icontainer.py::TestIContainer::testCreateAfterBlitzPort PASSED [ 77%]
06:04:55 test/integration/test_icontainer.py::TestSplitFilesets::testFilesetSplitByImage PASSED [ 77%]
06:04:58 test/integration/test_icontainer.py::TestSplitFilesets::testFilesetNotSplitByImage PASSED [ 77%]
06:05:01 test/integration/test_icontainer.py::TestSplitFilesets::testFilesetSplitByDatasetAndProject PASSED [ 77%]
06:05:04 test/integration/test_icontainer.py::TestSplitFilesets::testFilesetNotSplitByDatasets PASSED [ 77%]
06:05:05 test/integration/test_icontainer.py::TestSplitFilesets::testGetImagesBySplitFilesetsManyCases PASSED [ 77%]
06:05:08 test/integration/test_ildap.py::TestILdap::testLookupLdapExperimentersViaAdmin PASSED [ 77%]
06:05:10 test/integration/test_imetadata.py::TestIMetadata::testLoadAnnotations3671 PASSED [ 77%]
06:05:10 test/integration/test_imetadata.py::TestIMetadata::testLoadAnnotationsUsedNotOwned3671 PASSED [ 77%]
06:05:10 test/integration/test_imetadata.py::TestIMetadata::testCountAnnotationsUsedNotOwned3671 PASSED [ 77%]
06:05:10 test/integration/test_imetadata.py::TestIMetadata::testCountSpecifiedAnnotations3671 PASSED [ 77%]
06:05:10 test/integration/test_imetadata.py::TestIMetadata::testLoadSpecifiedAnnotations3671 PASSED [ 77%]
06:05:23 test/integration/test_iquery.py::TestQuery::testGetPixelsCount PASSED [ 77%]
06:05:23 test/integration/test_iquery.py::TestQuery::testQueryTaggedUnique PASSED [ 77%]
06:05:23 test/integration/test_iquery.py::TestQuery::testClassType PASSED [ 77%]
06:05:25 test/integration/test_isession.py::TestISession::testBasicUsage PASSED [ 77%]
06:05:28 test/integration/test_isession.py::TestISession::testManuallyClosingOwnSession PASSED [ 78%]
06:05:28 test/integration/test_isession.py::TestISession::testCreateSessionForUser PASSED [ 78%]
06:05:30 test/integration/test_isession.py::TestISession::testJoinSession_Helper PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testJoinSession PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testUpdateSessions[who0] PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testUpdateSessions[who1] PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testUpdateSessions[who2] PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testUpdateSessions[who3] PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testUpdateSessionsNonAdminDisabling PASSED [ 78%]
06:05:33 test/integration/test_isession.py::TestISession::testCreateSessionForGuest PASSED [ 78%]
06:05:35 test/integration/test_isession.py::TestISession::test1018CreationDestructionClosing PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testSimpleDestruction PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testGetMySessionsTicket1975 PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testTicket2196SetSecurityContext PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testManageMySessions PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testSessionWithIP[127.0.0.1] PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testSessionWithIP[2400:cb00:2048:1::6814:55] PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testSessionWithIP[1234:5678:1234:5678:1234:5678:121.212.121.212] PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testCreateUserSession PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testCreateUserSessionFromSudo[True] PASSED [ 78%]
06:05:38 test/integration/test_isession.py::TestISession::testCreateUserSessionFromSudo[False] PASSED [ 79%]
06:05:40 test/integration/test_ishare.py::TestIShare::test_that_permissions_are_default_private PASSED [ 79%]
06:05:43 test/integration/test_ishare.py::TestIShare::test_basic_usage PASSED [ 79%]
06:05:46 test/integration/test_ishare.py::TestIShare::test_canDoAction[canEdit] PASSED [ 79%]
06:05:48 test/integration/test_ishare.py::TestIShare::test_canDoAction[canAnnotate] PASSED [ 79%]
06:05:50 test/integration/test_ishare.py::TestIShare::test_canDoAction[canDelete] PASSED [ 79%]
06:05:53 test/integration/test_ishare.py::TestIShare::test_canDoAction[canLink] PASSED [ 79%]
06:05:55 test/integration/test_ishare.py::TestIShare::test8118 PASSED [ 79%]
06:06:00 test/integration/test_ishare.py::TestIShare::test1154 PASSED [ 79%]
06:06:05 test/integration/test_ishare.py::TestIShare::testCanAnnotate PASSED [ 79%]
06:06:10 test/integration/test_ishare.py::TestIShare::test1157 PASSED [ 79%]
06:06:10 test/integration/test_ishare.py::TestIShare::test1179 PASSED [ 79%]
06:06:15 test/integration/test_ishare.py::TestIShare::test1201 PASSED [ 79%]
06:06:17 test/integration/test_ishare.py::TestIShare::test1201b PASSED [ 79%]
06:06:25 test/integration/test_ishare.py::TestIShare::test1207 PASSED [ 79%]
06:06:27 test/integration/test_ishare.py::TestIShare::test1227 PASSED [ 79%]
06:06:32 test/integration/test_ishare.py::TestIShare::test2327 PASSED [ 79%]
06:06:37 test/integration/test_ishare.py::TestIShare::test2733 PASSED [ 79%]
06:06:51 test/integration/test_ishare.py::TestIShare::test2733Access PASSED [ 79%]
06:06:58 test/integration/test_ishare.py::TestIShare::test3214 PASSED [ 79%]
06:06:58 test/integration/test_ishare.py::TestIShare::test5711 PASSED [ 80%]
06:07:01 test/integration/test_ishare.py::TestIShare::test5756Raw PASSED [ 80%]
06:07:04 test/integration/test_ishare.py::TestIShare::test5756Wrapped PASSED [ 80%]
06:07:10 test/integration/test_ishare.py::TestIShare::test5851 PASSED [ 80%]
06:07:10 test/integration/test_ishare.py::TestIShare::test2513 PASSED [ 80%]
06:07:14 test/integration/test_ishare.py::TestIShare::test_OS_regular_user PASSED [ 80%]
06:07:22 test/integration/test_ishare.py::TestIShare::test_OS_non_member PASSED [ 80%]
06:07:27 test/integration/test_ishare.py::TestIShare::test_OS_admin_user PASSED [ 80%]
06:07:27 test/integration/test_ishare.py::TestIShare::test_bad_share PASSED [ 80%]
06:07:32 test/integration/test_ishare.py::TestIShare::test8513 PASSED [ 80%]
06:07:38 test/integration/test_ishare.py::TestIShare::test8704 PASSED [ 80%]
06:07:43 test/integration/test_ishare.py::TestIShare::test13018 PASSED [ 80%]
06:07:46 test/integration/test_itimeline.py::TestITimeline::testGeneral PASSED [ 80%]
06:07:48 test/integration/test_itimeline.py::TestITimeline::testCollaborativeTimeline PASSED [ 80%]
06:07:50 test/integration/test_itimeline.py::TestITimeline::test1173 PASSED [ 80%]
06:07:51 test/integration/test_itimeline.py::TestITimeline::test1175 PASSED [ 80%]
06:07:51 test/integration/test_itimeline.py::TestITimeline::test3234 PASSED [ 80%]
06:07:53 test/integration/test_itypes.py::TestTypes::testGetEnumerationTypes PASSED [ 80%]
06:07:54 test/integration/test_itypes.py::TestTypes::testAllEnumerations PASSED [ 80%]
06:07:54 test/integration/test_itypes.py::TestTypes::testGetEnumerationWithEntries PASSED [ 80%]
06:07:54 test/integration/test_itypes.py::TestTypes::testManageEnumeration PASSED [ 80%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testSaveArray PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testSaveCollection PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoOnCreation PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationTransient PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationManaged PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNewInstance PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNullInstance PASSED [ 81%]
06:07:56 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoUpdateInstance PASSED [ 81%]
06:07:57 test/integration/test_iupdate.py::TestIUpdate::testCannotSaveDeleted PASSED [ 81%]
06:08:00 test/integration/test_librarytest.py::TestLibrary::test9188 PASSED [ 81%]
06:08:04 test/integration/test_mail.py::TestMail::testEveryone PASSED [ 81%]
06:08:06 test/integration/test_mail.py::TestMail::testUserAdd PASSED [ 81%]
06:08:12 test/integration/test_mail.py::TestMail::testComment PASSED [ 81%]
06:08:14 test/integration/test_mapannotation.py::TestMapAnnotation::testMapStringField PASSED [ 81%]
06:08:14 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data0] PASSED [ 81%]
06:08:14 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data1] PASSED [ 81%]
06:08:15 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigEdit PASSED [ 81%]
06:08:15 test/integration/test_mapannotation.py::TestMapAnnotation::testEmptyItem PASSED [ 81%]
06:08:15 test/integration/test_mapannotation.py::TestMapAnnotation::testBigKeys PASSED [ 81%]
06:08:17 test/integration/test_metadatastore.py::TestMetadataStore::testBasicUsage PASSED [ 81%]
06:08:17 test/integration/test_metadatastore.py::TestMetadataStore::testMetadataService PASSED [ 82%]
06:08:23 test/integration/test_model51.py::TestModel51::testExposureTime PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testPhysicalSize PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[YOTTAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[ZETTAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[EXAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[PETAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[TERAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[GIGAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[MEGAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[KILOMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[HECTOMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[DECAMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[METER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[DECIMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[CENTIMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[MILLIMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[MICROMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[NANOMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[PICOMETER] PASSED [ 82%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[FEMTOMETER] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[ATTOMETER] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[ZEPTOMETER] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[YOCTOMETER] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[ANGSTROM] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[ASTRONOMICALUNIT] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[LIGHTYEAR] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[PARSEC] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[THOU] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[LINE] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[INCH] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[FOOT] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[YARD] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[MILE] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[POINT] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[PIXEL] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAllLengths[REFERENCEFRAME] PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testAsMapMethod PASSED [ 83%]
06:08:26 test/integration/test_model51.py::TestModel51::testMapEagerFetch PASSED [ 83%]
06:08:31 test/integration/test_model51.py::TestModel51::testMapSecurity PASSED [ 83%]
06:08:35 test/integration/test_model51.py::TestModel51::testUnitProjections PASSED [ 84%]
06:08:37 test/integration/test_permissions.py::TestPermissions::testLoginToPublicGroupTicket1940 PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testLinkingInPrivateGroup PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePrivateGroup PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadOnly PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadAnnotate PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroup PASSED [ 84%]
06:08:40 test/integration/test_permissions.py::TestPermissions::testCreatGroupAndchangePermissions PASSED [ 84%]
06:08:43 test/integration/test_permissions.py::TestPermissions::testGroupOwners PASSED [ 84%]
06:08:43 test/integration/test_permissions.py::TestPermissions::testSearchAllGroups PASSED [ 84%]
06:08:45 test/integration/test_permissions.py::TestPermissions::testOGContextParameter PASSED [ 84%]
06:08:48 test/integration/test_permissions.py::TestPermissions::testOGSetImplicitContext PASSED [ 84%]
06:08:50 test/integration/test_permissions.py::TestPermissions::testOGSetProxyContext PASSED [ 84%]
06:08:53 test/integration/test_permissions.py::TestPermissions::testOGSetSecurityContext PASSED [ 84%]
06:08:55 test/integration/test_permissions.py::TestPermissions::testOGArg PASSED [ 84%]
06:08:58 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneNotExplicit PASSED [ 84%]
06:09:03 test/integration/test_permissions.py::TestPermissions::testPrivateGroupCallContext PASSED [ 84%]
06:09:03 test/integration/test_permissions.py::TestPermissions::testAdminCanQueryWithGroupMinusOneTicket9632 PASSED [ 84%]
06:09:08 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsAdmin PASSED [ 84%]
06:09:13 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsNonAdmin PASSED [ 84%]
06:09:13 test/integration/test_permissions.py::TestPermissions::testImmutablePermissions PASSED [ 84%]
06:09:13 test/integration/test_permissions.py::TestPermissions::testDisallow PASSED [ 85%]
06:09:13 test/integration/test_permissions.py::TestPermissions::testClientSet PASSED [ 85%]
06:09:16 test/integration/test_permissions.py::TestPermissions::testAdminUseOfRawPixelsBean PASSED [ 85%]
06:09:19 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadGroupMinusOne PASSED [ 85%]
06:09:21 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroup PASSED [ 85%]
06:09:29 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-admin] PASSED [ 85%]
06:09:33 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-owner] PASSED [ 85%]
06:09:38 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-member] PASSED [ 85%]
06:09:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-admin] PASSED [ 85%]
06:09:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-owner] PASSED [ 85%]
06:09:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-member] PASSED [ 85%]
06:09:57 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-admin] PASSED [ 85%]
06:10:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-owner] PASSED [ 85%]
06:10:07 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-member] PASSED [ 85%]
06:10:12 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-admin] PASSED [ 85%]
06:10:17 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-owner] PASSED [ 85%]
06:10:22 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-member] PASSED [ 85%]
06:10:27 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-admin] PASSED [ 85%]
06:10:31 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-owner] PASSED [ 85%]
06:10:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-member] PASSED [ 85%]
06:10:41 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-admin] PASSED [ 86%]
06:10:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-owner] PASSED [ 86%]
06:10:52 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-member] PASSED [ 86%]
06:10:56 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-admin] PASSED [ 86%]
06:11:02 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-owner] PASSED [ 86%]
06:11:07 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-member] PASSED [ 86%]
06:11:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-admin] PASSED [ 86%]
06:11:17 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-owner] PASSED [ 86%]
06:11:22 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-member] PASSED [ 86%]
06:11:27 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-admin] PASSED [ 86%]
06:11:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-owner] PASSED [ 86%]
06:11:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-member] PASSED [ 86%]
06:11:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-admin] PASSED [ 86%]
06:11:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-owner] PASSED [ 86%]
06:11:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-member] PASSED [ 86%]
06:11:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-admin] PASSED [ 86%]
06:12:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-owner] PASSED [ 86%]
06:12:09 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-member] PASSED [ 86%]
06:12:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-admin] PASSED [ 86%]
06:12:19 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-owner] PASSED [ 86%]
06:12:24 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-member] PASSED [ 87%]
06:12:29 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-admin] PASSED [ 87%]
06:12:34 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-owner] PASSED [ 87%]
06:12:39 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-member] PASSED [ 87%]
06:12:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-admin] PASSED [ 87%]
06:12:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-owner] PASSED [ 87%]
06:12:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-member] PASSED [ 87%]
06:12:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-admin] PASSED [ 87%]
06:13:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-owner] PASSED [ 87%]
06:13:08 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-member] PASSED [ 87%]
06:13:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-admin] PASSED [ 87%]
06:13:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-owner] PASSED [ 87%]
06:13:24 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-member] PASSED [ 87%]
06:13:28 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-admin] PASSED [ 87%]
06:13:34 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-owner] PASSED [ 87%]
06:13:38 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-member] PASSED [ 87%]
06:13:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-admin] PASSED [ 87%]
06:13:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-owner] PASSED [ 87%]
06:13:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-member] PASSED [ 87%]
06:13:58 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-admin] PASSED [ 87%]
06:14:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-owner] PASSED [ 88%]
06:14:08 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-member] PASSED [ 88%]
06:14:12 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-admin] PASSED [ 88%]
06:14:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-owner] PASSED [ 88%]
06:14:23 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-member] PASSED [ 88%]
06:14:27 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-admin] PASSED [ 88%]
06:14:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-owner] PASSED [ 88%]
06:14:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-member] PASSED [ 88%]
06:14:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-admin] PASSED [ 88%]
06:14:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-owner] PASSED [ 88%]
06:14:51 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-member] PASSED [ 88%]
06:14:56 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-admin] PASSED [ 88%]
06:15:01 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-owner] PASSED [ 88%]
06:15:06 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-member] PASSED [ 88%]
06:15:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-admin] PASSED [ 88%]
06:15:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-owner] PASSED [ 88%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-member] PASSED [ 88%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[PlateI] SKIPPED [ 88%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[WellI] SKIPPED [ 88%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[ImageI] SKIPPED [ 88%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[FileAnnotationI] SKIPPED [ 88%]
06:15:24 test/integration/test_pixelsService.py::TestPixelsService::test9655 PASSED [ 89%]
06:15:27 test/integration/test_rawfilestore.py::TestRFS::testNullSize11743 PASSED [ 89%]
06:15:27 test/integration/test_rawfilestore.py::TestRFS::testGetFileId PASSED [ 89%]
06:15:32 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithClose PASSED [ 89%]
06:15:35 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithSave PASSED [ 89%]
06:15:37 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithForEachTile PASSED [ 89%]
06:15:43 test/integration/test_rawpixelsstore.py::TestRPS::testBigPlane PASSED [ 89%]
06:15:56 test/integration/test_rawpixelsstore.py::TestRPS::testRomioToPyramid PASSED [ 89%]
06:16:08 test/integration/test_rawpixelsstore.py::TestRPS::test2RomioToPyramidWithNegOne PASSED [ 89%]
06:16:31 test/integration/test_rawpixelsstore.py::TestRPS::testPyramidConcurrentAccess PASSED [ 89%]
06:16:40 test/integration/test_rawpixelsstore.py::TestTiles::testTiles PASSED [ 89%]
06:16:59 test/integration/test_reimport.py::TestReimportArchivedFiles::testConvertSynthetic PASSED [ 89%]
06:17:02 test/integration/test_render.py::TestRendering::test_render_region PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testCreate PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWrite PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWrite PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWriteRead PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testAppend PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testTruncateToZero PASSED [ 89%]
06:17:05 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testClose PASSED [ 90%]
06:17:06 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testImportLogFilenameSetting PASSED [ 90%]
06:17:09 test/integration/test_repository.py::TestRepository::test_dir PASSED [ 90%]
06:17:09 test/integration/test_repository.py::TestRepository::testBasicUsage PASSED [ 90%]
06:17:09 test/integration/test_repository.py::TestRepository::testSanityCheckRepos PASSED [ 90%]
06:17:09 test/integration/test_repository.py::TestRepository::testManagedRepoAsPubliRepo PASSED [ 90%]
06:17:12 test/integration/test_repository.py::TestFileExists::test_dir PASSED [ 90%]
06:17:12 test/integration/test_repository.py::TestFileExists::testFileExistsForDirectory PASSED [ 90%]
06:17:12 test/integration/test_repository.py::TestFileExists::testFileExistsForFile PASSED [ 90%]
06:17:15 test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir PASSED [ 90%]
06:17:20 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testTopPrivateGroup PASSED [ 90%]
06:17:25 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirPrivateGroup PASSED [ 90%]
06:17:32 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadOnlyGroup PASSED [ 90%]
06:17:37 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadWriteGroup PASSED [ 90%]
06:17:43 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadAnnotateGroup PASSED [ 90%]
06:17:45 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testMultiGroup PASSED [ 90%]
06:17:48 test/integration/test_repository.py::TestPythonImporter::test_dir PASSED [ 90%]
06:17:52 test/integration/test_repository.py::TestPythonImporter::testImportFileset PASSED [ 90%]
06:17:55 test/integration/test_repository.py::TestPythonImporter::testImportPaths PASSED [ 90%]
06:17:58 test/integration/test_repository.py::TestPythonImporter::testReopenRawFileStoresPR2542 PASSED [ 90%]
06:18:02 test/integration/test_repository.py::TestPythonImporter::testImportsFrom2Groups PASSED [ 91%]
06:18:05 test/integration/test_repository.py::TestRawAccess::test_dir PASSED [ 91%]
06:18:05 test/integration/test_repository.py::TestRawAccess::testAsNonAdmin PASSED [ 91%]
06:18:05 test/integration/test_repository.py::TestRawAccess::testAsAdmin PASSED [ 91%]
06:18:08 test/integration/test_repository.py::TestDbSync::test_dir PASSED [ 91%]
06:18:08 test/integration/test_repository.py::TestDbSync::testMtime PASSED [ 91%]
06:18:08 test/integration/test_repository.py::TestDbSync::testFileExists PASSED [ 91%]
06:18:08 test/integration/test_repository.py::TestDbSync::testNonDbFileNotReturned PASSED [ 91%]
06:18:11 test/integration/test_repository.py::TestRecursiveDelete::test_dir PASSED [ 91%]
06:18:11 test/integration/test_repository.py::TestRecursiveDelete::testCmdDeleteCantDeleteDirectories PASSED [ 91%]
06:18:12 test/integration/test_repository.py::TestRecursiveDelete::testRecursiveDeleteMethodAvailable PASSED [ 91%]
06:18:12 test/integration/test_repository.py::TestRecursiveDelete::testDoubleDot PASSED [ 91%]
06:18:15 test/integration/test_repository.py::TestDeleteLog::test_dir PASSED [ 91%]
06:18:15 test/integration/test_repository.py::TestDeleteLog::testSimpleDelete PASSED [ 91%]
06:18:17 test/integration/test_repository.py::TestUserTemplate::test_dir PASSED [ 91%]
06:18:17 test/integration/test_repository.py::TestUserTemplate::testCreateUuidFails PASSED [ 91%]
06:18:17 test/integration/test_repository.py::TestUserTemplate::testCreateUserDirPasses PASSED [ 91%]
06:18:17 test/integration/test_repository.py::TestUserTemplate::testCreateUuidUnderUserDirPasses PASSED [ 91%]
06:18:18 test/integration/test_repository.py::TestUserTemplate::testUserDirShouldBeGloballyWriteable PASSED [ 91%]
06:18:20 test/integration/test_repository.py::TestFilesetQueries::test_dir PASSED [ 91%]
06:18:20 test/integration/test_repository.py::TestFilesetQueries::testDeleteQuery PASSED [ 92%]
06:18:20 test/integration/test_repository.py::TestFilesetQueries::testCountFilesetFiles PASSED [ 92%]
06:18:20 test/integration/test_repository.py::TestFilesetQueries::testImportedImageFiles PASSED [ 92%]
06:18:23 test/integration/test_repository.py::TestOriginalMetadata::test_dir PASSED [ 92%]
06:18:26 test/integration/test_repository.py::TestOriginalMetadata::testFakeImport PASSED [ 92%]
06:18:29 test/integration/test_repository.py::TestDeletePerformance::test_dir PASSED [ 92%]
06:18:37 test/integration/test_repository.py::TestDeletePerformance::testImport PASSED [ 92%]
06:18:39 test/integration/test_rois.py::TestRois::teststats1 PASSED [ 92%]
06:18:39 test/integration/test_rois.py::TestRois::test3703 PASSED [ 92%]
06:18:45 test/integration/test_rois.py::TestRois::testGetROICount PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::test8990 PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color0] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color1] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color2] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color3] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color4] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color5] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color6] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color7] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color8] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testShapeColors[color9] PASSED [ 92%]
06:18:50 test/integration/test_rois.py::TestRois::testGetShapeStatsRestricted PASSED [ 93%]
06:18:53 test/integration/test_scripts.py::TestScripts::testBasicUsage PASSED [ 93%]
06:18:53 test/integration/test_scripts.py::TestScripts::testTicket1036 PASSED [ 93%]
06:18:55 test/integration/test_scripts.py::TestScripts::testUploadAndPing PASSED [ 93%]
06:18:56 test/integration/test_scripts.py::TestScripts::testUpload2562 PASSED [ 93%]
06:18:58 test/integration/test_scripts.py::TestScripts::testDelete6905 PASSED [ 93%]
06:19:01 test/integration/test_scripts.py::TestScripts::testDelete11371 PASSED [ 93%]
06:19:04 test/integration/test_scripts.py::TestScripts::testUploadOfficialScript PASSED [ 93%]
06:19:10 test/integration/test_scripts.py::TestScripts::testRunScript PASSED [ 93%]
06:19:13 test/integration/test_scripts.py::TestScripts::testEditScript PASSED [ 93%]
06:19:18 test/integration/test_scripts.py::TestScripts::testScriptValidation PASSED [ 93%]
06:19:21 test/integration/test_scripts.py::TestScripts::testSpeedOfThumbnailFigure PASSED [ 93%]
06:19:28 test/integration/test_scripts.py::TestScripts::test6066 PASSED [ 93%]
06:19:32 test/integration/test_scripts.py::TestScripts::testDynamicTime PASSED [ 93%]
06:19:41 test/integration/test_scripts.py::TestScripts::testDynamicUpdate PASSED [ 93%]
06:19:50 test/integration/test_search.py::TestSearch::test2541 PASSED [ 93%]
06:20:03 test/integration/test_search.py::TestSearch::test3164Private PASSED [ 93%]
06:20:17 test/integration/test_search.py::TestSearch::test3164ReadOnlySelf PASSED [ 93%]
06:20:33 test/integration/test_search.py::TestSearch::test3164ReadOnlyOther PASSED [ 93%]
06:20:47 test/integration/test_search.py::TestSearch::test3164CollabSelf PASSED [ 93%]
06:21:03 test/integration/test_search.py::TestSearch::test3164CollabOther PASSED [ 94%]
06:21:09 test/integration/test_search.py::TestSearch::test3721Ordering PASSED [ 94%]
06:21:41 test/integration/test_search.py::TestSearch::test8692 PASSED [ 94%]
06:21:45 test/integration/test_search.py::TestSearch::test8846 PASSED [ 94%]
06:21:55 test/integration/test_search.py::TestSearch::testClientPath PASSED [ 94%]
06:22:03 test/integration/test_search.py::TestSearch::testFilename PASSED [ 94%]
06:22:13 test/integration/test_search.py::TestSearch::test_csv_attachment PASSED [ 94%]
06:22:23 test/integration/test_search.py::TestSearch::test_txt_attachment PASSED [ 94%]
06:22:31 test/integration/test_search.py::TestSearch::test_word_portions PASSED [ 94%]
06:22:33 test/integration/test_search.py::TestSearch::test_empty_query_string PASSED [ 94%]
06:22:39 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very small] PASSED [ 94%]
06:22:43 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very-small] PASSED [ 94%]
06:22:49 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very_small] PASSED [ 94%]
06:22:53 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-small very] PASSED [ 94%]
06:23:00 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very small] PASSED [ 94%]
06:23:04 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very-small] PASSED [ 94%]
06:23:10 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very_small] PASSED [ 94%]
06:23:14 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-small very] PASSED [ 94%]
06:23:20 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very small] PASSED [ 94%]
06:23:24 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very-small] PASSED [ 94%]
06:23:28 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very_small] PASSED [ 95%]
06:23:34 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-small very] PASSED [ 95%]
06:23:38 test/integration/test_search.py::TestSearch::test_map_annotations PASSED [ 95%]
06:23:40 test/integration/test_simple.py::TestSimple::testUserId PASSED [ 95%]
06:23:40 test/integration/test_simple.py::TestSimple::testGroupId PASSED [ 95%]
06:23:40 test/integration/test_simple.py::TestSimple::testGroupPermissions PASSED [ 95%]
06:23:53 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs PASSED [ 95%]
06:23:58 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test9070 PASSED [ 95%]
06:24:01 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithGrpCtx PASSED [ 95%]
06:24:04 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithGrpCtxButNoLoad PASSED [ 95%]
06:24:06 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618RootWithGrpCtx PASSED [ 95%]
06:24:09 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618RootWithGrpCtxButNoLoad PASSED [ 95%]
06:24:15 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618MemberWithGrpCtxButNoLoad PASSED [ 95%]
06:24:20 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsThumbs PASSED [ 95%]
06:24:25 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsThumbsReadOnly PASSED [ 95%]
06:24:31 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-saveCurrent] PASSED [ 95%]
06:24:36 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-saveAs] PASSED [ 95%]
06:24:42 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-request] PASSED [ 95%]
06:24:47 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-resetDefault] PASSED [ 95%]
06:24:52 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-resetDefaultNoSave] PASSED [ 95%]
06:24:57 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-saveCurrent] PASSED [ 96%]
06:25:03 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-saveAs] PASSED [ 96%]
06:25:08 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-request] PASSED [ 96%]
06:25:13 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-resetDefault] PASSED [ 96%]
06:25:18 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-resetDefaultNoSave] PASSED [ 96%]
06:25:24 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-saveCurrent] PASSED [ 96%]
06:25:29 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-saveAs] PASSED [ 96%]
06:25:34 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-request] PASSED [ 96%]
06:25:39 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-resetDefault] PASSED [ 96%]
06:25:44 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-resetDefaultNoSave] PASSED [ 96%]
06:25:50 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-saveCurrent] PASSED [ 96%]
06:25:55 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-saveAs] PASSED [ 96%]
06:26:00 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-request] PASSED [ 96%]
06:26:05 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-resetDefault] PASSED [ 96%]
06:26:11 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-resetDefaultNoSave] PASSED [ 96%]
06:26:16 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-saveCurrent] PASSED [ 96%]
06:26:21 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-saveAs] PASSED [ 96%]
06:26:26 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-request] PASSED [ 96%]
06:26:32 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-resetDefault] PASSED [ 96%]
06:26:37 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-resetDefaultNoSave] PASSED [ 96%]
06:26:42 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-saveCurrent] PASSED [ 96%]
06:26:47 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-saveAs] PASSED [ 97%]
06:26:52 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-request] PASSED [ 97%]
06:26:58 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-resetDefault] PASSED [ 97%]
06:27:03 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-resetDefaultNoSave] PASSED [ 97%]
06:27:08 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readOnly-owner] PASSED [ 97%]
06:27:13 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readOnly-admin] PASSED [ 97%]
06:27:19 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readAnnotate-owner] PASSED [ 97%]
06:27:24 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readAnnotate-admin] PASSED [ 97%]
06:27:29 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readWrite-owner] PASSED [ 97%]
06:27:35 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readWrite-admin] PASSED [ 97%]
06:27:40 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readOnly-owner] PASSED [ 97%]
06:27:46 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readOnly-admin] PASSED [ 97%]
06:27:51 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readAnnotate-owner] PASSED [ 97%]
06:27:56 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readAnnotate-admin] PASSED [ 97%]
06:28:01 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readWrite-owner] PASSED [ 97%]
06:28:07 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readWrite-admin] PASSED [ 97%]
06:28:09 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testGetThumbnailSetAfterApplySettings PASSED [ 97%]
06:28:16 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnails PASSED [ 97%]
06:28:20 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnails64x64 PASSED [ 97%]
06:28:27 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnailsByLongestSideSet64x64 PASSED [ 97%]
06:28:31 test/integration/test_thumbs.py::TestThumbs::testThumbnailExists PASSED [ 98%]
06:28:38 test/integration/test_thumbs.py::TestThumbs::testThumbnailVersion[one] PASSED [ 98%]
06:28:46 test/integration/test_thumbs.py::TestThumbs::testThumbnailVersion[set] PASSED [ 98%]
06:28:49 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailx64x64 PASSED [ 98%]
06:28:53 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSidex64 PASSED [ 98%]
06:28:56 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailDirectx64x64 PASSED [ 98%]
06:29:00 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailForSectionDirectx0x0x64x64 PASSED [ 98%]
06:29:03 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailx64x60 PASSED [ 98%]
06:29:07 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSidex60 PASSED [ 98%]
06:29:11 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailDirectx64x60 PASSED [ 98%]
06:29:14 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailForSectionDirectx0x0x64x60 PASSED [ 98%]
06:29:21 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailSetx64x64 PASSED [ 98%]
06:29:29 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSideSetx64 PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test711 PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test843 PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test880 PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test883WithoutClose PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test883WithClose PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test883Upload PASSED [ 98%]
06:29:32 test/integration/test_tickets1000.py::TestTicket1000::test985 PASSED [ 98%]
06:29:34 test/integration/test_tickets2000.py::TestTickets2000::test1064 PASSED [ 99%]
06:29:39 test/integration/test_tickets2000.py::TestTickets2000::test1067 PASSED [ 99%]
06:29:39 test/integration/test_tickets2000.py::TestTickets2000::test1027 PASSED [ 99%]
06:29:42 test/integration/test_tickets2000.py::TestTickets2000::test1069 PASSED [ 99%]
06:29:42 test/integration/test_tickets2000.py::TestTickets2000::test1071 PASSED [ 99%]
06:29:47 test/integration/test_tickets2000.py::TestTickets2000::test1071_1 PASSED [ 99%]
06:29:52 test/integration/test_tickets2000.py::TestTickets2000::test1072 PASSED [ 99%]
06:29:53 test/integration/test_tickets2000.py::TestTickets2000::test1088 PASSED [ 99%]
06:29:58 test/integration/test_tickets2000.py::TestTickets2000::test1109 PASSED [ 99%]
06:30:03 test/integration/test_tickets2000.py::TestTickets2000::test1163 PASSED [ 99%]
06:30:03 test/integration/test_tickets2000.py::TestTickets2000::test1183 PASSED [ 99%]
06:30:06 test/integration/test_tickets3000.py::TestTickets3000::test2396 PASSED [ 99%]
06:30:15 test/integration/test_tickets3000.py::TestTickets3000::test2547 PASSED [ 99%]
06:30:15 test/integration/test_tickets3000.py::TestTickets3000::test2628 PASSED [ 99%]
06:30:17 test/integration/test_tickets3000.py::TestTickets3000::test2952 PASSED [ 99%]
06:30:47 test/integration/test_tickets3000.py::TestTickets3000::test2762 PASSED [ 99%]
06:30:52 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroup PASSED [ 99%]
06:30:55 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroupWhenConnectionLost PASSED [ 99%]
06:30:57 test/integration/test_tickets4000.py::TestTickets4000::test3201 PASSED [ 99%]
06:30:57 test/integration/test_tickets4000.py::TestTickets4000::test3131 PASSED [ 99%]
06:31:04 test/integration/test_util.py::TestUpgradeCheck::testReal FAILED [100%]
06:31:04 ==================================== ERRORS ====================================
06:31:04 ______________ ERROR at setup of TestConnectionMethods.testClose _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0392b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e91312b20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testClose>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e8c2ce5b0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0392b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e91312b20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:31:02,442 INFO [ omero.gateway] (MainThread) created connection (uuid=0327e88b-9bb1-4f45-8982-577052b0d6bd)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=0327e88b-9bb1-4f45-8982-577052b0d6bd)
06:31:04 _________ ERROR at setup of TestConnectionMethods.testTopLevelObjects __________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8efacb80>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8efac3d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testTopLevelObjects>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e8c2ce5b0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8efacb80>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8efac3d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:33:11,118 INFO [ omero.gateway] (MainThread) created connection (uuid=220f2659-e5e5-4a33-bccb-c72f334d5c59)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=220f2659-e5e5-4a33-bccb-c72f334d5c59)
06:31:04 ____________ ERROR at setup of TestFindObject.testFindExperimenter _____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f107ca0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e912751c0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testFindExperimenter>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e8f1942b0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f107ca0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e912751c0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:35:38,387 INFO [ omero.gateway] (MainThread) created connection (uuid=6a0edd7d-f8a6-47ea-a878-4918d4fbe045)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=6a0edd7d-f8a6-47ea-a878-4918d4fbe045)
06:31:04 ______________ ERROR at setup of TestGetObject.testGetAnnotations ______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89fa83a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb93eff70>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetAnnotations>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89fa83a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb93eff70>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:38:17,251 INFO [ omero.gateway] (MainThread) created connection (uuid=d0787ef7-9979-4ccd-b140-3ad525263cb1)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=d0787ef7-9979-4ccd-b140-3ad525263cb1)
06:31:04 _________________ ERROR at setup of TestGetObject.testGetImage _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e87712d30>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8eb82070>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetImage>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e87712d30>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8eb82070>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:40:25,417 INFO [ omero.gateway] (MainThread) created connection (uuid=99b7fc1d-ffdc-45fb-b2f0-1b3940b888c9)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=99b7fc1d-ffdc-45fb-b2f0-1b3940b888c9)
06:31:04 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-True] _______
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89eca6d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e89eca550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-True]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89eca6d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e89eca550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:42:36,007 INFO [ omero.gateway] (MainThread) created connection (uuid=72eb63c6-4392-4982-ad4a-355edd3c737d)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=72eb63c6-4392-4982-ad4a-355edd3c737d)
06:31:04 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-False] ______
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0151c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a0158b0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-False]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0151c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a0158b0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:44:47,092 INFO [ omero.gateway] (MainThread) created connection (uuid=c7e2515d-daaf-4dbf-a146-33f2c233b47b)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c7e2515d-daaf-4dbf-a146-33f2c233b47b)
06:31:04 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-True] ______
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1def9c40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1def9a90>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-True]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1def9c40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1def9a90>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:46:58,153 INFO [ omero.gateway] (MainThread) created connection (uuid=d961e0c9-d5a2-41f7-8c7d-549b4f3e7360)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=d961e0c9-d5a2-41f7-8c7d-549b4f3e7360)
06:31:04 _____ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-False] ______
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c625bb0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f3189d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-False]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c625bb0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f3189d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:49:09,222 INFO [ omero.gateway] (MainThread) created connection (uuid=a3e73c96-7848-4f49-9913-70e2aadde33b)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=a3e73c96-7848-4f49-9913-70e2aadde33b)
06:31:04 ________________ ERROR at setup of TestGetObject.testTraversal _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f335f10>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f335670>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg_tiny' for <Function testTraversal>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e00045b80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg_tiny(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f335f10>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f335670>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:51:20,329 INFO [ omero.gateway] (MainThread) created connection (uuid=7e57bc5a-b3e9-48e4-8ac2-a71c8c99a4ad)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=7e57bc5a-b3e9-48e4-8ac2-a71c8c99a4ad)
06:31:04 __________________ ERROR at setup of TestImage.testThumbnail ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c97e3a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb449dac0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testThumbnail>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c97e3a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb449dac0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:53:55,917 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:55,923 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:55,970 INFO [ omero.gateway] (MainThread) created connection (uuid=118e31b2-9619-4472-b4ec-9b2bd5de623f)
06:31:04 2024-10-25 04:53:56,521 INFO [ omero.gateway] (MainThread) created connection (uuid=da4b27d2-0aa1-4cf7-9785-ce1879d88db6)
06:31:04 2024-10-25 04:53:56,558 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:56,597 INFO [ omero.gateway] (MainThread) created connection (uuid=728b8f1c-7e26-439c-8b94-5758db4f233e)
06:31:04 2024-10-25 04:53:56,635 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:56,675 INFO [ omero.gateway] (MainThread) created connection (uuid=eab5b656-0349-4229-a174-b55048abb1fd)
06:31:04 2024-10-25 04:53:56,722 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:56,761 INFO [ omero.gateway] (MainThread) created connection (uuid=641b317b-1b7a-414e-9250-1599d2fa5fc0)
06:31:04 2024-10-25 04:53:56,804 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:56,842 INFO [ omero.gateway] (MainThread) created connection (uuid=f4b72895-5089-453a-ba9f-4930612205d1)
06:31:04 2024-10-25 04:53:56,883 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:56,923 INFO [ omero.gateway] (MainThread) created connection (uuid=8d7688f5-ba7a-4f10-aaa6-1d5d04e46385)
06:31:04 2024-10-25 04:53:56,964 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:57,005 INFO [ omero.gateway] (MainThread) created connection (uuid=cccf0ce6-c561-4780-b9c6-8bbbca1e171a)
06:31:04 2024-10-25 04:53:57,056 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:57,094 INFO [ omero.gateway] (MainThread) created connection (uuid=29717620-aeba-431c-bb66-42545a1f1189)
06:31:04 2024-10-25 04:53:57,163 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:57,202 INFO [ omero.gateway] (MainThread) created connection (uuid=2a622ff9-be8a-4132-9c4d-aaad931ea623)
06:31:04 2024-10-25 04:53:57,252 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:57,255 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:57,294 INFO [ omero.gateway] (MainThread) created connection (uuid=4a7bcf64-9469-4253-b813-a068279ec0df)
06:31:04 2024-10-25 04:53:57,367 INFO [ omero.gateway] (MainThread) created connection (uuid=21397af5-ed35-426d-94df-c0f22cc1e201)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=118e31b2-9619-4472-b4ec-9b2bd5de623f)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=da4b27d2-0aa1-4cf7-9785-ce1879d88db6)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=728b8f1c-7e26-439c-8b94-5758db4f233e)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=eab5b656-0349-4229-a174-b55048abb1fd)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=641b317b-1b7a-414e-9250-1599d2fa5fc0)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f4b72895-5089-453a-ba9f-4930612205d1)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=8d7688f5-ba7a-4f10-aaa6-1d5d04e46385)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=cccf0ce6-c561-4780-b9c6-8bbbca1e171a)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=29717620-aeba-431c-bb66-42545a1f1189)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=2a622ff9-be8a-4132-9c4d-aaad931ea623)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=4a7bcf64-9469-4253-b813-a068279ec0df)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=21397af5-ed35-426d-94df-c0f22cc1e201)
06:31:04 _________________ ERROR at setup of TestImage.testThumbnailSet _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e74abb0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e74a4f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testThumbnailSet>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e74abb0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e74a4f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:56:07,807 INFO [ omero.gateway] (MainThread) created connection (uuid=6c4539d0-cb54-49fc-8355-2802fdeb758c)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=6c4539d0-cb54-49fc-8355-2802fdeb758c)
06:31:04 _______________ ERROR at setup of TestImage.testRenderingModels ________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e29c100>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8ef6d190>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderingModels>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e29c100>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8ef6d190>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 04:58:18,190 INFO [ omero.gateway] (MainThread) created connection (uuid=72342771-7474-4afb-8915-cb2899eb1e5a)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=72342771-7474-4afb-8915-cb2899eb1e5a)
06:31:04 _________________ ERROR at setup of TestImage.testSplitChannel _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8ea73b50>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8f0e9fa0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testSplitChannel>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8ea73b50>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8f0e9fa0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:00:29,172 INFO [ omero.gateway] (MainThread) created connection (uuid=cf2d0a71-1589-4cd6-923b-796f0cc996cd)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=cf2d0a71-1589-4cd6-923b-796f0cc996cd)
06:31:04 __________________ ERROR at setup of TestImage.testLinePlots ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89f50c40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c40e880>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testLinePlots>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89f50c40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c40e880>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:02:40,254 INFO [ omero.gateway] (MainThread) created connection (uuid=defafc2b-4381-4887-aabd-79edaf350ce3)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=defafc2b-4381-4887-aabd-79edaf350ce3)
06:31:04 _________________ ERROR at setup of TestImage.testProjections __________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89f568e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbe06910>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testProjections>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e89f568e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbe06910>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:04:51,329 INFO [ omero.gateway] (MainThread) created connection (uuid=9b8be108-79da-46d2-b339-e0ff5cf23eaa)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9b8be108-79da-46d2-b339-e0ff5cf23eaa)
06:31:04 __________________ ERROR at setup of TestImage.testProperties __________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f193070>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1deeba00>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testProperties>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f193070>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1deeba00>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:07:02,440 INFO [ omero.gateway] (MainThread) created connection (uuid=3134bc31-0793-491d-87ea-2ab5ca8f0b13)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=3134bc31-0793-491d-87ea-2ab5ca8f0b13)
06:31:04 ________________ ERROR at setup of TestImage.testPixelSizeUnits ________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c55a700>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe23d700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testPixelSizeUnits>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c55a700>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe23d700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:09:13,448 INFO [ omero.gateway] (MainThread) created connection (uuid=13aa1704-523a-441b-8ff1-80423f0740a2)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=13aa1704-523a-441b-8ff1-80423f0740a2)
06:31:04 ________________ ERROR at setup of TestImage.testUnitsGetValue _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e912d30a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c35f1f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testUnitsGetValue>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e912d30a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c35f1f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:11:24,570 INFO [ omero.gateway] (MainThread) created connection (uuid=9256a2a5-0191-4e76-a836-8253d9774466)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9256a2a5-0191-4e76-a836-8253d9774466)
06:31:04 ____________ ERROR at setup of TestImage.testChannelWavelengthUnits ____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c6310d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c631dc0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testChannelWavelengthUnits>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c6310d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c631dc0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:13:36,040 INFO [ omero.gateway] (MainThread) created connection (uuid=8a35ec63-6639-445f-aacf-2ec76b154c40)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=8a35ec63-6639-445f-aacf-2ec76b154c40)
06:31:04 ______________ ERROR at setup of TestImage.testExposureTimeUnits _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbe0e040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbe0e550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testExposureTimeUnits>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbe0e040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbe0e550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:15:46,688 INFO [ omero.gateway] (MainThread) created connection (uuid=7c37e86a-d9eb-46f5-9651-11772bb7a2c4)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=7c37e86a-d9eb-46f5-9651-11772bb7a2c4)
06:31:04 __________________ ERROR at setup of TestImage.testShortname ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8efbd430>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e89e4a250>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testShortname>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8efbd430>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e89e4a250>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:17:57,742 INFO [ omero.gateway] (MainThread) created connection (uuid=168cd4ae-a09f-4601-8b41-9f7b9a3ada86)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=168cd4ae-a09f-4601-8b41-9f7b9a3ada86)
06:31:04 __________________ ERROR at setup of TestImage.testImageDate ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1ff95280>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a1aab20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testImageDate>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1ff95280>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a1aab20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:20:08,802 INFO [ omero.gateway] (MainThread) created connection (uuid=5aa24abd-fc15-4b62-84eb-89786863298b)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=5aa24abd-fc15-4b62-84eb-89786863298b)
06:31:04 ________________ ERROR at setup of TestImage.testSimpleMarshal _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e2de460>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e2de700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testSimpleMarshal>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1e2de460>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e2de700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:22:19,883 INFO [ omero.gateway] (MainThread) created connection (uuid=ddde83a0-bd9c-42d0-b293-9abd6b64ffe4)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=ddde83a0-bd9c-42d0-b293-9abd6b64ffe4)
06:31:04 ____________________ ERROR at setup of TestImage.testExport ____________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebe390ac0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe3903d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testExport>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebe390ac0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe3903d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:24:30,956 INFO [ omero.gateway] (MainThread) created connection (uuid=ea448fe8-c686-4e06-8c9e-c54d32944c4e)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=ea448fe8-c686-4e06-8c9e-c54d32944c4e)
06:31:04 _______________ ERROR at setup of TestImage.testRenderJpegRegion _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8434a970>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8434aeb0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8434a970>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8434aeb0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:26:42,014 INFO [ omero.gateway] (MainThread) created connection (uuid=98bdc05f-b689-42d4-86b5-4382ad07911c)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=98bdc05f-b689-42d4-86b5-4382ad07911c)
06:31:04 _________ ERROR at setup of TestImage.testRenderJpegRegion_resolution __________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb6e1d8e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8ecd6580>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_resolution>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb6e1d8e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8ecd6580>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:28:53,540 INFO [ omero.gateway] (MainThread) created connection (uuid=e3b05b38-fcc1-4384-8672-5d899ff4a370)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e3b05b38-fcc1-4384-8672-5d899ff4a370)
06:31:04 _____ ERROR at setup of TestImage.testRenderJpegRegion_invalid_resolution ______
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf895af0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf895850>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_invalid_resolution>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf895af0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf895850>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:31:04,232 INFO [ omero.gateway] (MainThread) created connection (uuid=f81f0c9e-ca66-4f2c-8864-e0cd277352fb)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f81f0c9e-ca66-4f2c-8864-e0cd277352fb)
06:31:04 ______________ ERROR at setup of TestImage.testRenderBirdsEyeView ______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb710f700>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb710f190>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb710f700>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb710f190>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:33:15,247 INFO [ omero.gateway] (MainThread) created connection (uuid=27e64929-062e-4ec6-83b7-9d57088785e0)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=27e64929-062e-4ec6-83b7-9d57088785e0)
06:31:04 ___________ ERROR at setup of TestImage.testRenderBirdsEyeView_Size ____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebc12d0a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e740cbaf0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView_Size>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb449b9a0>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebc12d0a0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e740cbaf0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:35:26,313 INFO [ omero.gateway] (MainThread) created connection (uuid=b9324978-71a6-4299-b783-3a0fd1c7fbbd)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=b9324978-71a6-4299-b783-3a0fd1c7fbbd)
06:31:04 _____________ ERROR at setup of TestPixels.testReuseRawPixelsStore _____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb6e06730>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6e06e50>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testReuseRawPixelsStore>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb6e06730>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6e06e50>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:37:56,990 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:56,996 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,039 INFO [ omero.gateway] (MainThread) created connection (uuid=0f62dbcf-c888-4dea-93d6-bb08f7bebcad)
06:31:04 2024-10-25 05:37:57,526 INFO [ omero.gateway] (MainThread) created connection (uuid=755e6286-3397-4d81-9168-ef993f4c2e7d)
06:31:04 2024-10-25 05:37:57,567 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,610 INFO [ omero.gateway] (MainThread) created connection (uuid=07feea8e-21d6-4a24-9cd3-8fe2e9bac315)
06:31:04 2024-10-25 05:37:57,647 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,689 INFO [ omero.gateway] (MainThread) created connection (uuid=c9e3e483-fe69-444f-8a3e-980816856368)
06:31:04 2024-10-25 05:37:57,732 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,775 INFO [ omero.gateway] (MainThread) created connection (uuid=e5a3643a-1e53-4c36-895c-9513034165d7)
06:31:04 2024-10-25 05:37:57,819 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,862 INFO [ omero.gateway] (MainThread) created connection (uuid=5debedad-da13-4ab2-919c-7e0f2b254154)
06:31:04 2024-10-25 05:37:57,906 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:57,952 INFO [ omero.gateway] (MainThread) created connection (uuid=1489b26d-8d35-4769-af57-85eac7e745f2)
06:31:04 2024-10-25 05:37:57,996 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:58,040 INFO [ omero.gateway] (MainThread) created connection (uuid=0d7970d0-69ce-4f8f-bf45-6f94e03ca4d9)
06:31:04 2024-10-25 05:37:58,106 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:58,147 INFO [ omero.gateway] (MainThread) created connection (uuid=c4472079-1072-4b28-ad24-a056b642b071)
06:31:04 2024-10-25 05:37:58,200 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:58,243 INFO [ omero.gateway] (MainThread) created connection (uuid=c29009a9-5edf-43ae-b7ac-fc963fd27d3b)
06:31:04 2024-10-25 05:37:58,291 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:58,295 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:37:58,340 INFO [ omero.gateway] (MainThread) created connection (uuid=9997d7b2-dccb-4003-8f8f-bffd7876e6f5)
06:31:04 2024-10-25 05:37:58,416 INFO [ omero.gateway] (MainThread) created connection (uuid=f9faec1f-2555-4d6e-9804-d5923b408623)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=0f62dbcf-c888-4dea-93d6-bb08f7bebcad)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=755e6286-3397-4d81-9168-ef993f4c2e7d)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=07feea8e-21d6-4a24-9cd3-8fe2e9bac315)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c9e3e483-fe69-444f-8a3e-980816856368)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e5a3643a-1e53-4c36-895c-9513034165d7)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=5debedad-da13-4ab2-919c-7e0f2b254154)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=1489b26d-8d35-4769-af57-85eac7e745f2)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=0d7970d0-69ce-4f8f-bf45-6f94e03ca4d9)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c4472079-1072-4b28-ad24-a056b642b071)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c29009a9-5edf-43ae-b7ac-fc963fd27d3b)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9997d7b2-dccb-4003-8f8f-bffd7876e6f5)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f9faec1f-2555-4d6e-9804-d5923b408623)
06:31:04 __________________ ERROR at setup of TestPixels.testPlaneInfo __________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8421b790>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c2bb760>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testPlaneInfo>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8421b790>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c2bb760>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:40:08,944 INFO [ omero.gateway] (MainThread) created connection (uuid=75d39184-65a3-4928-b302-ad9bbb5375f9)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=75d39184-65a3-4928-b302-ad9bbb5375f9)
06:31:04 _________________ ERROR at setup of TestPixels.testPixelsType __________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdfd100>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbdfd580>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testPixelsType>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdfd100>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbdfd580>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:42:20,000 INFO [ omero.gateway] (MainThread) created connection (uuid=df1b6c7f-5c31-4519-ae23-c260dc97291c)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=df1b6c7f-5c31-4519-ae23-c260dc97291c)
06:31:04 ___________________ ERROR at setup of TestPixels.testGetTile ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbd61460>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbd61e20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetTile>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbd61460>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebbd61e20>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:44:31,095 INFO [ omero.gateway] (MainThread) created connection (uuid=28ecd757-153f-40cd-bf02-8de1aebf7337)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=28ecd757-153f-40cd-bf02-8de1aebf7337)
06:31:04 __________________ ERROR at setup of TestPixels.testGetPlane ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbeeec40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebc045b50>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetPlane>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbeeec40>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebc045b50>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:46:42,158 INFO [ omero.gateway] (MainThread) created connection (uuid=a6529485-9632-4993-bc59-08c32ab31b9e)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=a6529485-9632-4993-bc59-08c32ab31b9e)
06:31:04 ________ ERROR at setup of TestPixels.testGetPlanesExceptionOnGetPlane _________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0a42b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a0a4dc0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnGetPlane>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a0a42b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a0a4dc0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:48:53,223 INFO [ omero.gateway] (MainThread) created connection (uuid=13b4fb30-e19d-4e9f-a88e-931d3a59aab3)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=13b4fb30-e19d-4e9f-a88e-931d3a59aab3)
06:31:04 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnClose __________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdb86d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe7ebdf0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnClose>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdb86d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0ebe7ebdf0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:51:04,377 INFO [ omero.gateway] (MainThread) created connection (uuid=1942f1cd-4014-459b-b2b5-ae80e597f7e9)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=1942f1cd-4014-459b-b2b5-ae80e597f7e9)
06:31:04 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnBoth ___________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a13fcd0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1fef3280>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnBoth>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a13fcd0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1fef3280>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:53:15,367 INFO [ omero.gateway] (MainThread) created connection (uuid=9358edf3-b81f-4c45-95cd-fb6822aa8d28)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9358edf3-b81f-4c45-95cd-fb6822aa8d28)
06:31:04 ________________ ERROR at setup of TestPixels.testGetHistogram _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1ff548b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb93fda30>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetHistogram>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0eb6e06310>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1ff548b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb93fda30>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:55:26,432 INFO [ omero.gateway] (MainThread) created connection (uuid=908c7282-abef-4e66-b21d-5ddc0d1ace68)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=908c7282-abef-4e66-b21d-5ddc0d1ace68)
06:31:04 ___________________ ERROR at setup of TestRDefs.testDefault ____________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f335040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf92a9a0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testDefault>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f335040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf92a9a0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:57:41,084 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,089 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,129 INFO [ omero.gateway] (MainThread) created connection (uuid=a6229d4d-9265-4f14-b9e5-6fa609ed414b)
06:31:04 2024-10-25 05:57:41,613 INFO [ omero.gateway] (MainThread) created connection (uuid=460290db-6bef-4a99-ac11-07d66356dcf2)
06:31:04 2024-10-25 05:57:41,652 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,691 INFO [ omero.gateway] (MainThread) created connection (uuid=e52ee7bb-e377-4735-9004-08a99daaf858)
06:31:04 2024-10-25 05:57:41,730 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,769 INFO [ omero.gateway] (MainThread) created connection (uuid=c893dce3-9a7a-4b9d-9663-dc67e7f05053)
06:31:04 2024-10-25 05:57:41,812 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,853 INFO [ omero.gateway] (MainThread) created connection (uuid=c1ca83ec-d367-4519-abc4-5a60b91033a5)
06:31:04 2024-10-25 05:57:41,898 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:41,937 INFO [ omero.gateway] (MainThread) created connection (uuid=9ec0718b-d50f-4d1a-a9ba-d6c247ece270)
06:31:04 2024-10-25 05:57:41,979 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,017 INFO [ omero.gateway] (MainThread) created connection (uuid=b40c39c1-cc64-439e-80a5-d7bd1f2b1e4d)
06:31:04 2024-10-25 05:57:42,059 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,098 INFO [ omero.gateway] (MainThread) created connection (uuid=3c6b5619-ec81-4b78-8ee2-b7aa09a76682)
06:31:04 2024-10-25 05:57:42,150 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,191 INFO [ omero.gateway] (MainThread) created connection (uuid=4fc05cfe-9283-456b-b45f-c68d8a5037bf)
06:31:04 2024-10-25 05:57:42,249 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,290 INFO [ omero.gateway] (MainThread) created connection (uuid=8e153f29-1672-4995-bd7f-e8877294ae0e)
06:31:04 2024-10-25 05:57:42,342 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,345 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 05:57:42,385 INFO [ omero.gateway] (MainThread) created connection (uuid=51c39485-a2db-47a8-8ccb-e6bbdcc295cc)
06:31:04 2024-10-25 05:57:42,465 INFO [ omero.gateway] (MainThread) created connection (uuid=d1402480-1282-4bd9-9542-0d0d3c90a2ea)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=a6229d4d-9265-4f14-b9e5-6fa609ed414b)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=460290db-6bef-4a99-ac11-07d66356dcf2)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e52ee7bb-e377-4735-9004-08a99daaf858)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c893dce3-9a7a-4b9d-9663-dc67e7f05053)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c1ca83ec-d367-4519-abc4-5a60b91033a5)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9ec0718b-d50f-4d1a-a9ba-d6c247ece270)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=b40c39c1-cc64-439e-80a5-d7bd1f2b1e4d)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=3c6b5619-ec81-4b78-8ee2-b7aa09a76682)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=4fc05cfe-9283-456b-b45f-c68d8a5037bf)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=8e153f29-1672-4995-bd7f-e8877294ae0e)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=51c39485-a2db-47a8-8ccb-e6bbdcc295cc)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=d1402480-1282-4bd9-9542-0d0d3c90a2ea)
06:31:04 __________________ ERROR at setup of TestRDefs.testCustomized __________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf951040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf951250>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testCustomized>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf951040>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf951250>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 05:59:52,695 INFO [ omero.gateway] (MainThread) created connection (uuid=43498548-c5b8-424d-b25d-a59a3a98ef9b)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=43498548-c5b8-424d-b25d-a59a3a98ef9b)
06:31:04 ________________ ERROR at setup of TestRDefs.testChannelWindows ________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbe0eb20>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1ff4dee0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testChannelWindows>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbe0eb20>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1ff4dee0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:02:03,752 INFO [ omero.gateway] (MainThread) created connection (uuid=f7752d9d-907f-4040-b14d-77eb80defa97)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f7752d9d-907f-4040-b14d-77eb80defa97)
06:31:04 ______________ ERROR at setup of TestRDefs.testFloatDefaultMinMax ______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e917c94c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e917c9610>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testFloatDefaultMinMax>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e917c94c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e917c9610>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:04:14,971 INFO [ omero.gateway] (MainThread) created connection (uuid=19256cbb-8cfb-4f6d-85fb-059f0069e647)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=19256cbb-8cfb-4f6d-85fb-059f0069e647)
06:31:04 _________________ ERROR at setup of TestRDefs.testEmissionWave _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8780ad00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6ec0370>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testEmissionWave>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8780ad00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6ec0370>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:06:25,895 INFO [ omero.gateway] (MainThread) created connection (uuid=621624d4-5553-4b2e-b73c-665fef0c35ff)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=621624d4-5553-4b2e-b73c-665fef0c35ff)
06:31:04 __________________ ERROR at setup of TestRDefs.testBatchCopy ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdbe4c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb9516700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testBatchCopy>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdbe4c0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb9516700>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:08:37,008 INFO [ omero.gateway] (MainThread) created connection (uuid=60cc5a0b-2402-4402-b5c4-4c7f804deb64)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=60cc5a0b-2402-4402-b5c4-4c7f804deb64)
06:31:04 ____________ ERROR at setup of TestRDefs.testGroupBasedPermissions _____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f0e7d00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf672550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGroupBasedPermissions>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f0e7d00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf672550>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:10:48,033 INFO [ omero.gateway] (MainThread) created connection (uuid=d7538df4-b8c2-4a86-8a1f-e7901dd6ec61)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=d7538df4-b8c2-4a86-8a1f-e7901dd6ec61)
06:31:04 ___________________ ERROR at setup of TestRDefs.testGetRdefs ___________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f86cdc0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f86c430>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetRdefs>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e1f86cdc0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1f86c430>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:12:59,506 INFO [ omero.gateway] (MainThread) created connection (uuid=80c83060-9af3-4e10-8ba3-5dfbfa316dcd)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=80c83060-9af3-4e10-8ba3-5dfbfa316dcd)
06:31:04 ________________ ERROR at setup of TestRDefs.testResetDefaults _________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e000b7dc0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e000649d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testResetDefaults>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e000b7dc0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e000649d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:15:10,179 INFO [ omero.gateway] (MainThread) created connection (uuid=e904f202-6f51-4f53-8a77-c4270c6cbb9c)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e904f202-6f51-4f53-8a77-c4270c6cbb9c)
06:31:04 _____________ ERROR at setup of TestRDefs.testQuantizationSettings _____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c583910>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c5830d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testQuantizationSettings>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8c583910>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8c5830d0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:17:21,251 INFO [ omero.gateway] (MainThread) created connection (uuid=f98aec3a-4186-4a4a-b61b-48389a54c228)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f98aec3a-4186-4a4a-b61b-48389a54c228)
06:31:04 _________ ERROR at setup of TestRDefs.testQuantizationSettingsInvalid __________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbd61f10>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a117970>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsInvalid>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbd61f10>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a117970>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:19:32,331 INFO [ omero.gateway] (MainThread) created connection (uuid=f031afad-4f89-43aa-98f3-c8af1535ac5a)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f031afad-4f89-43aa-98f3-c8af1535ac5a)
06:31:04 ___________ ERROR at setup of TestRDefs.testQuantizationSettingsBulk ___________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdea3d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a1b9460>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsBulk>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0ebbdea3d0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8a1b9460>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:21:43,393 INFO [ omero.gateway] (MainThread) created connection (uuid=cf6b2f0d-4140-4f8a-9729-8805fd946ef7)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=cf6b2f0d-4140-4f8a-9729-8805fd946ef7)
06:31:04 _______________ ERROR at setup of TestRDefs.testGetChannelsNoRE ________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf89b160>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf89ba90>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testGetChannelsNoRE>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf89b160>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf89ba90>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:23:54,455 INFO [ omero.gateway] (MainThread) created connection (uuid=af714308-d331-4e7b-8398-f5f8d4afbc35)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=af714308-d331-4e7b-8398-f5f8d4afbc35)
06:31:04 ____________ ERROR at setup of TestRDefs.testSetActiveChannelsNoRE _____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb435c340>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e860fd0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsNoRE>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb435c340>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e1e860fd0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:26:05,543 INFO [ omero.gateway] (MainThread) created connection (uuid=0e7af7fe-bb01-4954-a5f7-a5352b3cc8e4)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=0e7af7fe-bb01-4954-a5f7-a5352b3cc8e4)
06:31:04 ___________ ERROR at setup of TestRDefs.testSetActiveChannelsWithRE ____________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf91c340>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf91cc40>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsWithRE>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf91c340>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eaf91cc40>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:28:16,599 INFO [ omero.gateway] (MainThread) created connection (uuid=b4130113-69f5-4117-bb53-caaec6b99c68)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=b4130113-69f5-4117-bb53-caaec6b99c68)
06:31:04 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[True] ____
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8eb8fa00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e912e7d30>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[True]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8eb8fa00>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e912e7d30>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:30:28,092 INFO [ omero.gateway] (MainThread) created connection (uuid=9f5ad9a9-47bf-453d-89f3-30b01012889e)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9f5ad9a9-47bf-453d-89f3-30b01012889e)
06:31:04 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[False] ___
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a028e50>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e00073400>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[False]>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8a028e50>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e00073400>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:32:38,799 INFO [ omero.gateway] (MainThread) created connection (uuid=879676e0-66d8-4f32-8bd1-d55953305431)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=879676e0-66d8-4f32-8bd1-d55953305431)
06:31:04 ______________ ERROR at setup of TestRDefs.testUnregisterService _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb98b24f0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6eff4f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testUnregisterService>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb98b24f0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6eff4f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:34:49,823 INFO [ omero.gateway] (MainThread) created connection (uuid=c7f0af2d-65e7-49fe-8327-0b2504584589)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c7f0af2d-65e7-49fe-8327-0b2504584589)
06:31:04 _______________ ERROR at setup of TestRDefs.testRegisterService ________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f1c2070>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e91257cd0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testRegisterService>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e8f1c2070>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e91257cd0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:37:00,915 INFO [ omero.gateway] (MainThread) created connection (uuid=4cd4963c-47b0-4e4b-a64f-8ef2b4bcb7ab)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=4cd4963c-47b0-4e4b-a64f-8ef2b4bcb7ab)
06:31:04 ___________________ ERROR at setup of TestRDefs.testCloseRE ____________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf9515e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8429b2b0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testCloseRE>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e912f0f70>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eaf9515e0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e8429b2b0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:39:11,968 INFO [ omero.gateway] (MainThread) created connection (uuid=16776b83-44b4-4ca7-8e22-8b7e891c2676)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=16776b83-44b4-4ca7-8e22-8b7e891c2676)
06:31:04 _____________ ERROR at setup of TestWrapper.testAllObjectsWrapped ______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb70788b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6ad6370>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testAllObjectsWrapped>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e9153de80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0eb70788b0>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb6ad6370>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:45:22,095 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:22,101 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:22,144 INFO [ omero.gateway] (MainThread) created connection (uuid=6b271886-f1d2-4fc9-8aa1-c410fe916fa0)
06:31:04 2024-10-25 06:45:22,651 INFO [ omero.gateway] (MainThread) created connection (uuid=70d74b26-f808-47fd-a89b-0a4f1b36f14c)
06:31:04 2024-10-25 06:45:22,690 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:22,735 INFO [ omero.gateway] (MainThread) created connection (uuid=c2ade768-625b-4986-8038-bb5f8f92052d)
06:31:04 2024-10-25 06:45:22,776 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:22,822 INFO [ omero.gateway] (MainThread) created connection (uuid=ec659487-06ab-4aab-b4e3-ed2af03521a8)
06:31:04 2024-10-25 06:45:22,870 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:22,913 INFO [ omero.gateway] (MainThread) created connection (uuid=79b4c642-adc8-4d30-9350-b4df2d23cddb)
06:31:04 2024-10-25 06:45:22,960 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,003 INFO [ omero.gateway] (MainThread) created connection (uuid=e4f9ca6f-7958-484c-940c-f63efdeb16c4)
06:31:04 2024-10-25 06:45:23,048 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,091 INFO [ omero.gateway] (MainThread) created connection (uuid=47e36d8d-be00-49ca-9e39-503ebc247a5c)
06:31:04 2024-10-25 06:45:23,131 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,172 INFO [ omero.gateway] (MainThread) created connection (uuid=2ad56f79-ba73-45b7-aab8-8cb4d7d38772)
06:31:04 2024-10-25 06:45:23,224 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,265 INFO [ omero.gateway] (MainThread) created connection (uuid=9cc1cda2-5b87-47dc-b33f-a3b894011228)
06:31:04 2024-10-25 06:45:23,319 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,360 INFO [ omero.gateway] (MainThread) created connection (uuid=3981cc35-55f9-47dd-874d-6391e5a7a8ba)
06:31:04 2024-10-25 06:45:23,409 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,413 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:45:23,460 INFO [ omero.gateway] (MainThread) created connection (uuid=6e9c0921-995c-46cb-b4ee-482f48fa2e30)
06:31:04 2024-10-25 06:45:23,541 INFO [ omero.gateway] (MainThread) created connection (uuid=bd93c382-e21a-43c9-b2ea-c7a309ea4edb)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=6b271886-f1d2-4fc9-8aa1-c410fe916fa0)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=70d74b26-f808-47fd-a89b-0a4f1b36f14c)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c2ade768-625b-4986-8038-bb5f8f92052d)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=ec659487-06ab-4aab-b4e3-ed2af03521a8)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=79b4c642-adc8-4d30-9350-b4df2d23cddb)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e4f9ca6f-7958-484c-940c-f63efdeb16c4)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=47e36d8d-be00-49ca-9e39-503ebc247a5c)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=2ad56f79-ba73-45b7-aab8-8cb4d7d38772)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=9cc1cda2-5b87-47dc-b33f-a3b894011228)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=3981cc35-55f9-47dd-874d-6391e5a7a8ba)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=6e9c0921-995c-46cb-b4ee-482f48fa2e30)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=bd93c382-e21a-43c9-b2ea-c7a309ea4edb)
06:31:04 _______________ ERROR at setup of TestWrapper.testDatasetWrapper _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e9153c670>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e9153c6a0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testDatasetWrapper>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e9153de80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e9153c670>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e9153c6a0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:47:32,577 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:47:32,627 INFO [ omero.gateway] (MainThread) created connection (uuid=581b29eb-9755-4773-91c2-1c4fb4b1ffc1)
06:31:04 2024-10-25 06:47:32,726 INFO [ omero.gateway] (MainThread) created connection (uuid=69ddff4a-5879-43c0-9def-17d5c2ab0f51)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=581b29eb-9755-4773-91c2-1c4fb4b1ffc1)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=69ddff4a-5879-43c0-9def-17d5c2ab0f51)
06:31:04 _______________ ERROR at setup of TestWrapper.testDetailsWrapper _______________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e91533640>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e915337c0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 request = <SubRequest 'author_testimg' for <Function testDetailsWrapper>>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e9153de80>
06:31:04 @pytest.fixture(scope='function')
06:31:04 def author_testimg(request, gatewaywrapper):
06:31:04 """
06:31:04 logs in as Author and returns the test image, creating it first if needed.
06:31:04 """
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e91533640>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0e915337c0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ---------------------------- Captured stderr setup -----------------------------
06:31:04 2024-10-25 06:49:42,798 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:49:42,849 INFO [ omero.gateway] (MainThread) created connection (uuid=7f820b43-4686-4fec-9670-6313ee9967eb)
06:31:04 2024-10-25 06:49:42,939 INFO [ omero.gateway] (MainThread) created connection (uuid=68205728-0ed6-4626-9952-9e65ae1bf173)
06:31:04 I<
06:31:04 ------------------------------ Captured log setup ------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=7f820b43-4686-4fec-9670-6313ee9967eb)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=68205728-0ed6-4626-9952-9e65ae1bf173)
06:31:04 =================================== FAILURES ===================================
06:31:04 _________________________ TestAdmin.test_checkupgrade0 _________________________
06:31:04 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f0f01ca1730>
06:31:04 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f0ecd9acfd0>
06:31:04 def test_checkupgrade0(self, monkeypatch):
06:31:04 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:31:04 createUpgradeCheckClass("999999999.0.0"))
06:31:04 self.args.append("checkupgrade")
06:31:04 > self.go()
06:31:04 test/integration/clitest/test_admin.py:66:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 test/integration/clitest/test_admin.py:60: in go
06:31:04 self.cli.invoke(self.args, strict=True)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:31:04 self.assertRC()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <omero.cli.CLI object at 0x7f0f071e9be0>
06:31:04 def assertRC(self):
06:31:04 if self.rv != 0:
06:31:04 > raise NonZeroReturnCode(self.rv, "assert failed")
06:31:04 E omero.cli.NonZeroReturnCode: assert failed
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:31:04 ----------------------------- Captured stdout call -----------------------------
06:31:04 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ecd982070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 Error printing text
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ecd982070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 _________________________ TestAdmin.test_checkupgrade1 _________________________
06:31:04 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f0f01ca1a90>
06:31:04 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f0ec6107df0>
06:31:04 def test_checkupgrade1(self, monkeypatch):
06:31:04 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:31:04 createUpgradeCheckClass("0.0.0"))
06:31:04 self.args.append("checkupgrade")
06:31:04 with pytest.raises(NonZeroReturnCode) as exc:
06:31:04 self.go()
06:31:04 > assert exc.value.rv == 1
06:31:04 E AssertionError: assert 2 == 1
06:31:04 E + where 2 = NonZeroReturnCode('assert failed').rv
06:31:04 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:31:04 test/integration/clitest/test_admin.py:74: AssertionError
06:31:04 ----------------------------- Captured stdout call -----------------------------
06:31:04 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ecd73d130>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 Error printing text
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ecd73d130>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 _________________ TestAdminRestrictedAdmin.test_checkupgrade0 __________________
06:31:04 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f0f01cae940>
06:31:04 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f0ed265eb20>
06:31:04 def test_checkupgrade0(self, monkeypatch):
06:31:04 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:31:04 createUpgradeCheckClass("999999999.0.0"))
06:31:04 self.args.append("checkupgrade")
06:31:04 > self.cli.invoke(self.args, strict=True)
06:31:04 test/integration/clitest/test_admin.py:134:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:31:04 self.assertRC()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <omero.cli.CLI object at 0x7f0f0184f730>
06:31:04 def assertRC(self):
06:31:04 if self.rv != 0:
06:31:04 > raise NonZeroReturnCode(self.rv, "assert failed")
06:31:04 E omero.cli.NonZeroReturnCode: assert failed
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:31:04 ----------------------------- Captured stdout call -----------------------------
06:31:04 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ed2604f70>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 Error printing text
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ed2604f70>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 _________________ TestAdminRestrictedAdmin.test_checkupgrade1 __________________
06:31:04 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f0f01caed00>
06:31:04 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f0ed26571c0>
06:31:04 def test_checkupgrade1(self, monkeypatch):
06:31:04 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:31:04 createUpgradeCheckClass("0.0.0"))
06:31:04 self.args.append("checkupgrade")
06:31:04 with pytest.raises(NonZeroReturnCode) as exc:
06:31:04 self.cli.invoke(self.args, strict=True)
06:31:04 > assert exc.value.rv == 1
06:31:04 E AssertionError: assert 2 == 1
06:31:04 E + where 2 = NonZeroReturnCode('assert failed').rv
06:31:04 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:31:04 test/integration/clitest/test_admin.py:142: AssertionError
06:31:04 ----------------------------- Captured stdout call -----------------------------
06:31:04 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ed261dd60>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 Error printing text
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0ed261dd60>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 _____________ TestGetObject.testGetObjectsByMapAnnotations[Image] ______________
06:31:04 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0f0190a8e0>
06:31:04 datatype = 'Image'
06:31:04 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:31:04 'Screen', 'Plate'])
06:31:04 def testGetObjectsByMapAnnotations(self, datatype):
06:31:04 > client, exp = self.new_client_and_user()
06:31:04 test/integration/gatewaytest/test_get_objects.py:767:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:31:04 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:31:04 admin_service = cls.root.getSession().getAdminService()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = session-c3ea95fb-6a9c-4c4a-9f94-78c953e1a68a/a964b812-3e2c-4821-b0f7-f86369ab8287 -t -e 1.1 @ BlitzAdapters
06:31:04 _ctx = None
06:31:04 def getAdminService(self, _ctx=None):
06:31:04 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:31:04 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 E recv() returned zero
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:31:04 ____________ TestGetObject.testGetObjectsByMapAnnotations[Dataset] _____________
06:31:04 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0f01335640>
06:31:04 datatype = 'Dataset'
06:31:04 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:31:04 'Screen', 'Plate'])
06:31:04 def testGetObjectsByMapAnnotations(self, datatype):
06:31:04 > client, exp = self.new_client_and_user()
06:31:04 test/integration/gatewaytest/test_get_objects.py:767:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:31:04 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:31:04 admin_service = cls.root.getSession().getAdminService()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = session-c3ea95fb-6a9c-4c4a-9f94-78c953e1a68a/a964b812-3e2c-4821-b0f7-f86369ab8287 -t -e 1.1 @ BlitzAdapters
06:31:04 _ctx = None
06:31:04 def getAdminService(self, _ctx=None):
06:31:04 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:31:04 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 E recv() returned zero
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:31:04 ____________ TestGetObject.testGetObjectsByMapAnnotations[Project] _____________
06:31:04 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0f00e3e550>
06:31:04 datatype = 'Project'
06:31:04 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:31:04 'Screen', 'Plate'])
06:31:04 def testGetObjectsByMapAnnotations(self, datatype):
06:31:04 > client, exp = self.new_client_and_user()
06:31:04 test/integration/gatewaytest/test_get_objects.py:767:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:31:04 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:31:04 admin_service = cls.root.getSession().getAdminService()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = session-c3ea95fb-6a9c-4c4a-9f94-78c953e1a68a/a964b812-3e2c-4821-b0f7-f86369ab8287 -t -e 1.1 @ BlitzAdapters
06:31:04 _ctx = None
06:31:04 def getAdminService(self, _ctx=None):
06:31:04 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:31:04 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 E recv() returned zero
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:31:04 _____________ TestGetObject.testGetObjectsByMapAnnotations[Screen] _____________
06:31:04 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0f00e3e790>
06:31:04 datatype = 'Screen'
06:31:04 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:31:04 'Screen', 'Plate'])
06:31:04 def testGetObjectsByMapAnnotations(self, datatype):
06:31:04 > client, exp = self.new_client_and_user()
06:31:04 test/integration/gatewaytest/test_get_objects.py:767:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:31:04 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:31:04 admin_service = cls.root.getSession().getAdminService()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = session-c3ea95fb-6a9c-4c4a-9f94-78c953e1a68a/a964b812-3e2c-4821-b0f7-f86369ab8287 -t -e 1.1 @ BlitzAdapters
06:31:04 _ctx = None
06:31:04 def getAdminService(self, _ctx=None):
06:31:04 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:31:04 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 E recv() returned zero
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:31:04 _____________ TestGetObject.testGetObjectsByMapAnnotations[Plate] ______________
06:31:04 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f0f00e3e910>
06:31:04 datatype = 'Plate'
06:31:04 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:31:04 'Screen', 'Plate'])
06:31:04 def testGetObjectsByMapAnnotations(self, datatype):
06:31:04 > client, exp = self.new_client_and_user()
06:31:04 test/integration/gatewaytest/test_get_objects.py:767:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:31:04 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:31:04 admin_service = cls.root.getSession().getAdminService()
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = session-c3ea95fb-6a9c-4c4a-9f94-78c953e1a68a/a964b812-3e2c-4821-b0f7-f86369ab8287 -t -e 1.1 @ BlitzAdapters
06:31:04 _ctx = None
06:31:04 def getAdminService(self, _ctx=None):
06:31:04 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:31:04 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 E recv() returned zero
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:31:04 --------------------------- Captured stderr teardown ---------------------------
06:31:04 2024-10-25 04:53:35,074 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 *2024-10-25 04:53:35,136 INFO [ omero.gateway] (MainThread) created connection (uuid=f4fe4439-a244-4f17-bbb7-0fe6da93f0ad)
06:31:04 *2024-10-25 04:53:35,283 INFO [ omero.gateway] (MainThread) created connection (uuid=bad9ed6a-a2df-4a07-9a1a-c1f869bcb7af)
06:31:04 *2024-10-25 04:53:35,597 INFO [ omero.gateway] (MainThread) created connection (uuid=fc100e07-4b62-49b1-9956-4202790ae5d4)
06:31:04 *2024-10-25 04:53:35,709 INFO [ omero.gateway] (MainThread) created connection (uuid=3cc7d01f-2f88-4791-abbb-d6a02871c9fa)
06:31:04 *2024-10-25 04:53:35,815 INFO [ omero.gateway] (MainThread) created connection (uuid=e2c9617b-ed88-470b-a3c0-49b94990a42d)
06:31:04 *2024-10-25 04:53:35,912 INFO [ omero.gateway] (MainThread) created connection (uuid=41322efa-4535-445a-b4a8-63b6cd89d507)
06:31:04 2024-10-25 04:53:35,964 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:35,971 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:36,018 INFO [ omero.gateway] (MainThread) created connection (uuid=3acc91c5-0063-46fa-8eb9-caaa9706fd55)
06:31:04 2024-10-25 04:53:36,314 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 04:53:36,318 WARNI [ omero.client] (MainThread) Cannot get session service for killSession. Using closeSession
06:31:04 ---------------------------- Captured log teardown -----------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=f4fe4439-a244-4f17-bbb7-0fe6da93f0ad)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=bad9ed6a-a2df-4a07-9a1a-c1f869bcb7af)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=fc100e07-4b62-49b1-9956-4202790ae5d4)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=3cc7d01f-2f88-4791-abbb-d6a02871c9fa)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=e2c9617b-ed88-470b-a3c0-49b94990a42d)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=41322efa-4535-445a-b4a8-63b6cd89d507)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=3acc91c5-0063-46fa-8eb9-caaa9706fd55)
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 WARNING omero.client:clients.py:1095 Cannot get session service for killSession. Using closeSession
06:31:04 _____________________________ TestUser.testSaveAs ______________________________
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e849c1d60>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb44fa1f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 > h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 /usr/lib64/python3.9/urllib/request.py:1346:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 /usr/lib64/python3.9/http/client.py:1285: in request
06:31:04 self._send_request(method, url, body, headers, encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:31:04 self.endheaders(body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:31:04 self._send_output(message_body, encode_chunked=encode_chunked)
06:31:04 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:31:04 self.send(msg)
06:31:04 /usr/lib64/python3.9/http/client.py:980: in send
06:31:04 self.connect()
06:31:04 /usr/lib64/python3.9/http/client.py:1447: in connect
06:31:04 super().connect()
06:31:04 /usr/lib64/python3.9/http/client.py:946: in connect
06:31:04 self.sock = self._create_connection(
06:31:04 /usr/lib64/python3.9/socket.py:844: in create_connection
06:31:04 raise err
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 address = ('downloads.openmicroscopy.org', 443)
06:31:04 timeout = <object object at 0x7f0f06366b40>, source_address = None
06:31:04 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:31:04 source_address=None):
06:31:04 """Connect to *address* and return the socket object.
06:31:04 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:31:04 port)``) and return the socket object. Passing the optional
06:31:04 *timeout* parameter will set the timeout on the socket instance
06:31:04 before attempting to connect. If no *timeout* is supplied, the
06:31:04 global default timeout setting returned by :func:`getdefaulttimeout`
06:31:04 is used. If *source_address* is set it must be a tuple of (host, port)
06:31:04 for the socket to bind as a source address before making the connection.
06:31:04 A host of '' or port 0 tells the OS to use the default.
06:31:04 """
06:31:04 host, port = address
06:31:04 err = None
06:31:04 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:31:04 af, socktype, proto, canonname, sa = res
06:31:04 sock = None
06:31:04 try:
06:31:04 sock = socket(af, socktype, proto)
06:31:04 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:31:04 sock.settimeout(timeout)
06:31:04 if source_address:
06:31:04 sock.bind(source_address)
06:31:04 > sock.connect(sa)
06:31:04 E TimeoutError: [Errno 110] Connection timed out
06:31:04 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:31:04 During handling of the above exception, another exception occurred:
06:31:04 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f0f00fc2e20>
06:31:04 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0e91567490>
06:31:04 def testSaveAs(self, gatewaywrapper):
06:31:04 for u in (gatewaywrapper.AUTHOR, gatewaywrapper.ADMIN):
06:31:04 # Test image should be owned by author
06:31:04 gatewaywrapper.loginAsAuthor()
06:31:04 > image = gatewaywrapper.getTestImage(autocreate=True)
06:31:04 test/integration/gatewaytest/test_user.py:34:
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:31:04 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:31:04 i = IMAGES[alias].create()
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:31:04 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:31:04 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:31:04 return opener.open(url, data, timeout)
06:31:04 /usr/lib64/python3.9/urllib/request.py:517: in open
06:31:04 response = self._open(req, data)
06:31:04 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:31:04 result = self._call_chain(self.handle_open, protocol, protocol +
06:31:04 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:31:04 result = func(*args)
06:31:04 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:31:04 return self.do_open(http.client.HTTPSConnection, req,
06:31:04 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:31:04 self = <urllib.request.HTTPSHandler object at 0x7f0e91312fd0>
06:31:04 http_class = <class 'http.client.HTTPSConnection'>
06:31:04 req = <urllib.request.Request object at 0x7f0e849c1d60>
06:31:04 http_conn_args = {'check_hostname': None, 'context': None}
06:31:04 host = 'downloads.openmicroscopy.org'
06:31:04 h = <http.client.HTTPSConnection object at 0x7f0eb44fa1f0>
06:31:04 def do_open(self, http_class, req, **http_conn_args):
06:31:04 """Return an HTTPResponse object for the request, using http_class.
06:31:04 http_class must implement the HTTPConnection API from http.client.
06:31:04 """
06:31:04 host = req.host
06:31:04 if not host:
06:31:04 raise URLError('no host given')
06:31:04 # will parse host:port
06:31:04 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:31:04 h.set_debuglevel(self._debuglevel)
06:31:04 headers = dict(req.unredirected_hdrs)
06:31:04 headers.update({k: v for k, v in req.headers.items()
06:31:04 if k not in headers})
06:31:04 # TODO(jhylton): Should this be redesigned to handle
06:31:04 # persistent connections?
06:31:04 # We want to make an HTTP/1.1 request, but the addinfourl
06:31:04 # class isn't prepared to deal with a persistent connection.
06:31:04 # It will try to read all remaining data from the socket,
06:31:04 # which will block while the server waits for the next request.
06:31:04 # So make sure the connection gets closed after the (only)
06:31:04 # request.
06:31:04 headers["Connection"] = "close"
06:31:04 headers = {name.title(): val for name, val in headers.items()}
06:31:04 if req._tunnel_host:
06:31:04 tunnel_headers = {}
06:31:04 proxy_auth_hdr = "Proxy-Authorization"
06:31:04 if proxy_auth_hdr in headers:
06:31:04 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:31:04 # Proxy-Authorization should not be sent to origin
06:31:04 # server.
06:31:04 del headers[proxy_auth_hdr]
06:31:04 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:31:04 try:
06:31:04 try:
06:31:04 h.request(req.get_method(), req.selector, req.data, headers,
06:31:04 encode_chunked=req.has_header('Transfer-encoding'))
06:31:04 except OSError as err: # timeout error
06:31:04 > raise URLError(err)
06:31:04 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 2024-10-25 06:42:57,991 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:31:04 2024-10-25 06:42:58,026 INFO [ omero.gateway] (MainThread) created connection (uuid=c2d16d4f-fe40-4842-a3e8-37bbbb0843b0)
06:31:04 2024-10-25 06:42:58,095 INFO [ omero.gateway] (MainThread) created connection (uuid=2f4f651a-e2bd-4940-a4cb-0f9ef422332e)
06:31:04 I<
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=c2d16d4f-fe40-4842-a3e8-37bbbb0843b0)
06:31:04 INFO omero.gateway:__init__.py:2243 created connection (uuid=2f4f651a-e2bd-4940-a4cb-0f9ef422332e)
06:31:04 __________________________ TestUpgradeCheck.testReal ___________________________
06:31:04 self = <test.integration.test_util.TestUpgradeCheck object at 0x7f0efa32d5b0>
06:31:04 def testReal(self):
06:31:04 uc = UpgradeCheck("test", version="test")
06:31:04 uc.run()
06:31:04 > assert uc.isUpgradeNeeded() is True
06:31:04 E assert False is True
06:31:04 E + where False = isUpgradeNeeded()
06:31:04 E + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f0e8eb627c0>.isUpgradeNeeded
06:31:04 test/integration/test_util.py:35: AssertionError
06:31:04 ----------------------------- Captured stderr call -----------------------------
06:31:04 2024-10-25 07:31:03,850 ERROR [ omero.util.UpgradeCheck] (MainThread) HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0e87714f40>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 ------------------------------ Captured log call -------------------------------
06:31:04 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f0e87714f40>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:31:04 =============================== warnings summary ===============================
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:31:04 import sys, string, imp, os, threading, warnings, datetime
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:31:04 warnings.warn(
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:31:04 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:31:04 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:31:04 from pkg_resources import DistributionNotFound, get_distribution
06:31:04 OmeroPy/test/integration/clitest/test_admin.py: 2 warnings
06:31:04 OmeroPy/test/integration/clitest/test_chgrp.py: 116 warnings
06:31:04 OmeroPy/test/integration/clitest/test_chown.py: 76 warnings
06:31:04 OmeroPy/test/integration/clitest/test_cleanse.py: 7 warnings
06:31:04 OmeroPy/test/integration/clitest/test_delete.py: 81 warnings
06:31:04 OmeroPy/test/integration/clitest/test_download.py: 91 warnings
06:31:04 OmeroPy/test/integration/clitest/test_duplicate.py: 18 warnings
06:31:04 OmeroPy/test/integration/clitest/test_fs.py: 26 warnings
06:31:04 OmeroPy/test/integration/clitest/test_group.py: 154 warnings
06:31:04 OmeroPy/test/integration/clitest/test_import.py: 189 warnings
06:31:04 OmeroPy/test/integration/clitest/test_import_bulk.py: 1 warning
06:31:04 OmeroPy/test/integration/clitest/test_ldap.py: 5 warnings
06:31:04 OmeroPy/test/integration/clitest/test_metadata.py: 10 warnings
06:31:04 OmeroPy/test/integration/clitest/test_obj.py: 56 warnings
06:31:04 OmeroPy/test/integration/clitest/test_pyramids.py: 10 warnings
06:31:04 OmeroPy/test/integration/clitest/test_script.py: 10 warnings
06:31:04 OmeroPy/test/integration/clitest/test_search.py: 16 warnings
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py: 121 warnings
06:31:04 OmeroPy/test/integration/clitest/test_tag.py: 57 warnings
06:31:04 OmeroPy/test/integration/clitest/test_upload.py: 6 warnings
06:31:04 OmeroPy/test/integration/clitest/test_user.py: 183 warnings
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1]
06:31:04 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2]
06:31:04 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/cli.py:2105: DeprecationWarning:
06:31:04 Using '--dry-run'. Future versions will switch to '--force'. Explicitly set the parameter for portability
06:31:04 warnings.warn("\nUsing '--dry-run'.\
06:31:04 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
06:31:04 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
06:31:04 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
06:31:04 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/clients.py:1019: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 self.__logger.warn(
06:31:04 OmeroPy/test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py:131: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testBulk1') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_PixelsI.py:37: DeprecationWarning: Pixels.relatedTo is deprecated
06:31:04 warnings.warn(item + " is deprecated", DeprecationWarning)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLogin_None_True_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLogin_None_False_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLogin_300_True_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLogin_300_False_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginAs_rw_____0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginAs_rwr____0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginAs_rwra___0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginAs_rwrw___0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginMultiGroup_True_True_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginMultiGroup_True_False0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginMultiGroup_False_True0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testLoginMultiGroup_False_Fals0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testGroup
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testGroup0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testTimeout
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testTimeout0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testFile
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testFile0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testKey
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testKey0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[user]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testWho_user_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[root]
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/testWho_root_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/test_open0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/test_open_with_id0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/test_open_restricted_admin_no_0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/test_open_restricted_admin_sud0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_close
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-21/test_close0') (type: LocalPath); converted to str implicitly
06:31:04 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:31:04 OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir returned '5f122b86-ffc5-40c3-9429-4e769cea0395_3717/497800fd-a883-4912-bd2a-507cb0d38472', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/gatewaytest/test_annotation.py: 4 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_chmod.py: 28 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_connection.py: 10 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 3 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_image_wrapper.py: 3 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_user.py: 1 warning
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 logger.warn("%s on %s to <%s> %s(%r, %r)",
06:31:04 OmeroPy/test/integration/gatewaytest/test_annotation.py: 13 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_chgrp.py: 4 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_chmod.py: 3 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 25 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py: 5 warnings
06:31:04 OmeroPy/test/integration/gatewaytest/test_services.py: 2 warnings
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3824: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:31:04 convertedPlane = byteSwappedPlane.tostring()
06:31:04 OmeroPy/test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4381: DeprecationWarning: Deprecated. Use deleteObject() or deleteObjects()
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:31:04 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:31:04 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:31:04 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:10236: DeprecationWarning: Deprecated. Use getImportedImageFiles()
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:31:04 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3048: DeprecationWarning: Deprecated. Use ExperimenterGroupWrapper.groupSummary()
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/gatewaytest/test_ticket10618.py: 24 warnings
06:31:04 OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py: 1 warning
06:31:04 OmeroPy/test/integration/scriptstest/test_script_utils.py: 150 warnings
06:31:04 OmeroPy/test/integration/test_exporter.py: 1 warning
06:31:04 OmeroPy/test/integration/test_ishare.py: 3 warnings
06:31:04 OmeroPy/test/integration/test_librarytest.py: 31 warnings
06:31:04 OmeroPy/test/integration/test_permissions.py: 2 warnings
06:31:04 OmeroPy/test/integration/test_render.py: 1 warning
06:31:04 OmeroPy/test/integration/test_rois.py: 2 warnings
06:31:04 OmeroPy/test/integration/test_scripts.py: 1 warning
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py: 55 warnings
06:31:04 OmeroPy/test/integration/test_tickets1000.py: 1 warning
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:31:04 converted_plane = byte_swapped_plane.tostring()
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:905: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 log.warn("PlateColumn is unimplemented")
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:955: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 log.warn(
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:31:04 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:1389: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 log.warn("Invalid Id:%d found in row %s", row[n], row)
06:31:04 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:31:04 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:31:04 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:31:04 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:31:04 <string>:77: DeprecationWarning: This plugin is deprecated as of OMERO 5.5.0. Use the upload CLI plugin available from https://pypi.org/project/omero-upload/ instead.
06:31:04 OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript returned 4958, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0f0693fa60>
06:31:04 Traceback (most recent call last):
06:31:04 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:31:04 self.close()
06:31:04 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:31:04 unlink(self.name)
06:31:04 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpwocbahco.tiff'
06:31:04 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:31:04 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0f0693fa60>
06:31:04 Traceback (most recent call last):
06:31:04 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:31:04 self.close()
06:31:04 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:31:04 unlink(self.name)
06:31:04 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpyuy_poc0.foo'
06:31:04 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:31:04 OmeroPy/test/integration/scriptstest/test_script_utils.py: 200 warnings
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1131: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:31:04 converted_row = row.tostring()
06:31:04 OmeroPy/test/integration/tablestest/test_backwards_compatibility.py: 12 warnings
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py:84: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:31:04 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable returned object #0 (::omero::model::OriginalFile)
06:31:04 {
06:31:04 _id = object #1 (::omero::RLong)
06:31:04 {
06:31:04 _val = 5014
06:31:04 }
06:31:04 _details = object #2 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = object #3 (::omero::model::Experimenter)
06:31:04 {
06:31:04 _id = object #4 (::omero::RLong)
06:31:04 {
06:31:04 _val = 3847
06:31:04 }
06:31:04 _details = object #5 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #6 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = True
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #7 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #8 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = object #9 (::omero::RInt)
06:31:04 {
06:31:04 _val = 0
06:31:04 }
06:31:04 _groupExperimenterMapSeq =
06:31:04 {
06:31:04 }
06:31:04 _groupExperimenterMapLoaded = False
06:31:04 _omeName = object #10 (::omero::RString)
06:31:04 {
06:31:04 _val = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 }
06:31:04 _firstName = object #11 (::omero::RString)
06:31:04 {
06:31:04 _val = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 }
06:31:04 _middleName = <nil>
06:31:04 _lastName = object #12 (::omero::RString)
06:31:04 {
06:31:04 _val = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 }
06:31:04 _institution = <nil>
06:31:04 _ldap = object #13 (::omero::RBool)
06:31:04 {
06:31:04 _val = False
06:31:04 }
06:31:04 _email = object #14 (::omero::RString)
06:31:04 {
06:31:04 _val =
06:31:04 }
06:31:04 _config =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 }
06:31:04 _group = object #15 (::omero::model::ExperimenterGroup)
06:31:04 {
06:31:04 _id = object #16 (::omero::RLong)
06:31:04 {
06:31:04 _val = 2824
06:31:04 }
06:31:04 _details = object #17 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #18 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = True
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #19 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #20 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = <object #9>
06:31:04 _name = object #21 (::omero::RString)
06:31:04 {
06:31:04 _val = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 }
06:31:04 _ldap = <object #13>
06:31:04 _groupExperimenterMapSeq =
06:31:04 {
06:31:04 }
06:31:04 _groupExperimenterMapLoaded = False
06:31:04 _config =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _description = <nil>
06:31:04 }
06:31:04 _creationEvent = object #22 (::omero::model::Event)
06:31:04 {
06:31:04 _id = object #23 (::omero::RLong)
06:31:04 {
06:31:04 _val = 80630
06:31:04 }
06:31:04 _details = object #24 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #25 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = True
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #26 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #27 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _status = <nil>
06:31:04 _time = object #28 (::omero::RTime)
06:31:04 {
06:31:04 _val = 1729835890632
06:31:04 }
06:31:04 _experimenter = <object #3>
06:31:04 _experimenterGroup = <object #15>
06:31:04 _type = object #29 (::omero::model::EventType)
06:31:04 {
06:31:04 _id = object #30 (::omero::RLong)
06:31:04 {
06:31:04 _val = 4
06:31:04 }
06:31:04 _details = object #31 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #32 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = False
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #33 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #34 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _value = object #35 (::omero::RString)
06:31:04 {
06:31:04 _val = User
06:31:04 }
06:31:04 }
06:31:04 _containingEvent = <nil>
06:31:04 _logsSeq =
06:31:04 {
06:31:04 }
06:31:04 _logsLoaded = True
06:31:04 _session = object #36 (::omero::model::Session)
06:31:04 {
06:31:04 _id = object #37 (::omero::RLong)
06:31:04 {
06:31:04 _val = 8772
06:31:04 }
06:31:04 _details = object #38 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #39 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = False
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #40 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #41 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = <object #9>
06:31:04 _node = object #42 (::omero::model::Node)
06:31:04 {
06:31:04 _id = object #43 (::omero::RLong)
06:31:04 {
06:31:04 _val = 1
06:31:04 }
06:31:04 _details = <nil>
06:31:04 _loaded = False
06:31:04 _version = <nil>
06:31:04 _sessionsSeq =
06:31:04 {
06:31:04 }
06:31:04 _sessionsLoaded = False
06:31:04 _uuid = <nil>
06:31:04 _conn = <nil>
06:31:04 _up = <nil>
06:31:04 _down = <nil>
06:31:04 _scale = <nil>
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 }
06:31:04 _uuid = object #44 (::omero::RString)
06:31:04 {
06:31:04 _val = ********
06:31:04 }
06:31:04 _owner = <object #3>
06:31:04 _sudoer = <nil>
06:31:04 _timeToIdle = object #45 (::omero::RLong)
06:31:04 {
06:31:04 _val = 600000
06:31:04 }
06:31:04 _timeToLive = object #46 (::omero::RLong)
06:31:04 {
06:31:04 _val = 0
06:31:04 }
06:31:04 _started = object #47 (::omero::RTime)
06:31:04 {
06:31:04 _val = 1729835890598
06:31:04 }
06:31:04 _closed = <nil>
06:31:04 _message = object #48 (::omero::RString)
06:31:04 {
06:31:04 _val = Initial message.
06:31:04 }
06:31:04 _defaultEventType = object #49 (::omero::RString)
06:31:04 {
06:31:04 _val = User
06:31:04 }
06:31:04 _userAgent = object #50 (::omero::RString)
06:31:04 {
06:31:04 _val = OMERO.py.test
06:31:04 }
06:31:04 _userIP = <nil>
06:31:04 _eventsSeq =
06:31:04 {
06:31:04 }
06:31:04 _eventsLoaded = False
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = True
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _updateEvent = <object #22>
06:31:04 _permissions = object #51 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = False
06:31:04 [2] = False
06:31:04 [3] = False
06:31:04 [4] = False
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 5db39891-2680-4684-b894-89753fd447a8
06:31:04 key = omero.session.uuid
06:31:04 value = e2147637-41f8-448a-bdbf-b97aa4a87037
06:31:04 }
06:31:04 _event = object #52 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 8772
06:31:04 sessionUuid = *********
06:31:04 userId = 3847
06:31:04 userName = 73bacd39-6dae-47ea-9d3b-d3bc006f9c74
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 2824
06:31:04 groupName = 345b9a3f-c7b4-4a32-8c20-4b4874420100
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = 80630
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 2824
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #53 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = <nil>
06:31:04 _pixelsFileMapsSeq =
06:31:04 {
06:31:04 }
06:31:04 _pixelsFileMapsLoaded = True
06:31:04 _pixelsFileMapsCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _path = object #54 (::omero::RString)
06:31:04 {
06:31:04 _val = /test
06:31:04 }
06:31:04 _repo = <nil>
06:31:04 _size = <nil>
06:31:04 _atime = object #55 (::omero::RTime)
06:31:04 {
06:31:04 _val = 1729835890631
06:31:04 }
06:31:04 _mtime = object #56 (::omero::RTime)
06:31:04 {
06:31:04 _val = 1729835890631
06:31:04 }
06:31:04 _ctime = object #57 (::omero::RTime)
06:31:04 {
06:31:04 _val = 1729835890631
06:31:04 }
06:31:04 _hasher = <nil>
06:31:04 _hash = <nil>
06:31:04 _mimetype = object #58 (::omero::RString)
06:31:04 {
06:31:04 _val = OMERO.tables
06:31:04 }
06:31:04 _filesetEntriesSeq =
06:31:04 {
06:31:04 }
06:31:04 _filesetEntriesLoaded = True
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = True
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _name = object #59 (::omero::RString)
06:31:04 {
06:31:04 _val = /test
06:31:04 }
06:31:04 }, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:31:04 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_service.py:54: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:31:04 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:31:04 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_tables.py:55: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:31:04 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:31:04 OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper returned '3aab9f78-279b-4e6d-b9c6-75d6d532b794', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_isession.py::TestISession::testSessionWithIP[127.0.0.1]
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_SessionI.py:37: DeprecationWarning: Session.userIP is deprecated
06:31:04 warnings.warn(item + " is deprecated", DeprecationWarning)
06:31:04 OmeroPy/test/integration/test_ishare.py::TestIShare::test1201
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test1201 returned (<omero.clients.BaseClient object at 0x7f0e874d86d0>, 8987, 1729836461797), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user returned (object #0 (::omero::model::Image)
06:31:04 {
06:31:04 _id = object #1 (::omero::RLong)
06:31:04 {
06:31:04 _val = 6287
06:31:04 }
06:31:04 _details = <nil>
06:31:04 _loaded = False
06:31:04 _version = <nil>
06:31:04 _series = <nil>
06:31:04 _acquisitionDate = <nil>
06:31:04 _archived = <nil>
06:31:04 _partial = <nil>
06:31:04 _format = <nil>
06:31:04 _imagingEnvironment = <nil>
06:31:04 _objectiveSettings = <nil>
06:31:04 _instrument = <nil>
06:31:04 _stageLabel = <nil>
06:31:04 _experiment = <nil>
06:31:04 _pixelsSeq = {}
06:31:04 _pixelsLoaded = False
06:31:04 _wellSamplesSeq = {}
06:31:04 _wellSamplesLoaded = False
06:31:04 _roisSeq = {}
06:31:04 _roisLoaded = False
06:31:04 _datasetLinksSeq = {}
06:31:04 _datasetLinksLoaded = False
06:31:04 _datasetLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _folderLinksSeq = {}
06:31:04 _folderLinksLoaded = False
06:31:04 _folderLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _fileset = <nil>
06:31:04 _annotationLinksSeq = {}
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _name = <nil>
06:31:04 _description = <nil>
06:31:04 }, 9022), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir returned '304391bd-74c9-415d-9c1d-b7c7b04005d4_4195/4e4e461b-5a6d-4375-80d9-ed8523fc5dc0', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestRepository::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRepository::test_dir returned 'dce114e0-5632-4c53-9070-e5ff544396b7_4196/af58de2b-95bf-4065-beb4-0ce7caebc1d6', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir returned '638cae83-f1cb-4830-ae25-797b79ea14fc_4197/092d4281-4e09-48c9-8521-905a39b99c15', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir returned 'c997fed4-5aed-4db3-9496-60443b415aa7_4198/5acd187f-25ff-4ad5-a4ef-62f0307e2802', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir returned 'f8e61e05-ede0-4a72-9d1d-9ef3972cc530_4210/7070fd25-177a-4962-83c4-22673cf7936e', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir returned 'd7485d87-83c8-453a-8096-e552fa0da748_4215/edefc13b-ab32-49d3-837a-864106c7c571', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir returned 'f4e9a0c0-f850-4be0-a849-560acc028198_4216/e42e9f96-fbcf-4c7c-978a-b2690d3085bf', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir returned 'bf894683-7956-442e-8c82-bd5f2e5bed85_4217/d179ebe8-aab8-461c-a7a1-e039b52eb058', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir returned 'a49dea80-6ee0-495d-9707-eff3d1fdc83a_4218/22558871-c9aa-421f-b33d-ad4dcb931f64', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir returned '000eee62-99b4-4254-8086-5dc213d23d72_4219/092b79b0-fef0-4ae4-9c2d-112f6f27c944', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir returned '68822454-0467-41f5-8dc9-4eaf8d02ee60_4220/8fa2e746-1363-4e96-8cbe-ff85173b004e', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir returned '4ab1a2dc-890f-434d-9865-1b2d7f4acefc_4221/4bf7d7bc-b3f7-4dda-b0fc-a5e152680bdd', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir returned 'c71969dc-8558-40da-912a-c373fd0255d4_4223/3f62535a-35f7-45e7-a83d-79df54c5dd30', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage returned 50a16ad9-ad74-4c04-b7ae-379e04c75dc3/3129839d-27ab-4962-ba6d-c3c588b304b2omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562 returned (2e974317-9252-4149-b7c0-8224c1ac8235/4d7e4881-6ff3-4abf-ae51-30aad65eb4b5omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000, object #0 (::omero::model::OriginalFile)
06:31:04 {
06:31:04 _id = object #1 (::omero::RLong)
06:31:04 {
06:31:04 _val = 5702
06:31:04 }
06:31:04 _details = object #2 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = object #3 (::omero::model::Experimenter)
06:31:04 {
06:31:04 _id = object #4 (::omero::RLong)
06:31:04 {
06:31:04 _val = 0
06:31:04 }
06:31:04 _details = <nil>
06:31:04 _loaded = False
06:31:04 _version = <nil>
06:31:04 _groupExperimenterMapSeq =
06:31:04 {
06:31:04 }
06:31:04 _groupExperimenterMapLoaded = False
06:31:04 _omeName = <nil>
06:31:04 _firstName = <nil>
06:31:04 _middleName = <nil>
06:31:04 _lastName = <nil>
06:31:04 _institution = <nil>
06:31:04 _ldap = <nil>
06:31:04 _email = <nil>
06:31:04 _config =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 }
06:31:04 _group = object #5 (::omero::model::ExperimenterGroup)
06:31:04 {
06:31:04 _id = object #6 (::omero::RLong)
06:31:04 {
06:31:04 _val = 1
06:31:04 }
06:31:04 _details = object #7 (::omero::model::Details)
06:31:04 {
06:31:04 _owner = <nil>
06:31:04 _group = <nil>
06:31:04 _creationEvent = <nil>
06:31:04 _updateEvent = <nil>
06:31:04 _permissions = object #8 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = False
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -52
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 3129839d-27ab-4962-ba6d-c3c588b304b2
06:31:04 key = omero.session.uuid
06:31:04 value = 50a16ad9-ad74-4c04-b7ae-379e04c75dc3
06:31:04 }
06:31:04 _event = object #9 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 9290
06:31:04 sessionUuid = *********
06:31:04 userId = 4230
06:31:04 userName = aba4950f-8592-4e58-af12-911ede400d35
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 3148
06:31:04 groupName = 5d381a95-c9c3-4765-a54e-b1289dc05074
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = -1
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 3148
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #10 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = object #11 (::omero::RInt)
06:31:04 {
06:31:04 _val = 0
06:31:04 }
06:31:04 _name = object #12 (::omero::RString)
06:31:04 {
06:31:04 _val = user
06:31:04 }
06:31:04 _ldap = object #13 (::omero::RBool)
06:31:04 {
06:31:04 _val = False
06:31:04 }
06:31:04 _groupExperimenterMapSeq =
06:31:04 {
06:31:04 }
06:31:04 _groupExperimenterMapLoaded = False
06:31:04 _config =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _description = <nil>
06:31:04 }
06:31:04 _creationEvent = object #14 (::omero::model::Event)
06:31:04 {
06:31:04 _id = object #15 (::omero::RLong)
06:31:04 {
06:31:04 _val = 99438
06:31:04 }
06:31:04 _details = <nil>
06:31:04 _loaded = False
06:31:04 _status = <nil>
06:31:04 _time = <nil>
06:31:04 _experimenter = <nil>
06:31:04 _experimenterGroup = <nil>
06:31:04 _type = <nil>
06:31:04 _containingEvent = <nil>
06:31:04 _logsSeq =
06:31:04 {
06:31:04 }
06:31:04 _logsLoaded = False
06:31:04 _session = <nil>
06:31:04 }
06:31:04 _updateEvent = <object #14>
06:31:04 _permissions = object #16 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 [0] = False
06:31:04 [1] = True
06:31:04 [2] = True
06:31:04 [3] = False
06:31:04 [4] = True
06:31:04 [5] = True
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 _externalInfo = <nil>
06:31:04 _call =
06:31:04 {
06:31:04 key = omero.client.uuid
06:31:04 value = 3129839d-27ab-4962-ba6d-c3c588b304b2
06:31:04 key = omero.session.uuid
06:31:04 value = 50a16ad9-ad74-4c04-b7ae-379e04c75dc3
06:31:04 }
06:31:04 _event = object #17 (::omero::sys::EventContext)
06:31:04 {
06:31:04 shareId = -1
06:31:04 sessionId = 9290
06:31:04 sessionUuid = *********
06:31:04 userId = 4230
06:31:04 userName = aba4950f-8592-4e58-af12-911ede400d35
06:31:04 sudoerId = <nil>
06:31:04 sudoerName = <nil>
06:31:04 groupId = 3148
06:31:04 groupName = 5d381a95-c9c3-4765-a54e-b1289dc05074
06:31:04 isAdmin = False
06:31:04 adminPrivileges =
06:31:04 {
06:31:04 }
06:31:04 eventId = -1
06:31:04 eventType = User
06:31:04 memberOfGroups =
06:31:04 {
06:31:04 [0] = 3148
06:31:04 [1] = 1
06:31:04 }
06:31:04 leaderOfGroups =
06:31:04 {
06:31:04 }
06:31:04 groupPermissions = object #18 (::omero::model::Permissions)
06:31:04 {
06:31:04 _restrictions =
06:31:04 {
06:31:04 }
06:31:04 _extendedRestrictions =
06:31:04 {
06:31:04 }
06:31:04 _perm1 = -120
06:31:04 }
06:31:04 }
06:31:04 }
06:31:04 _loaded = True
06:31:04 _version = <object #11>
06:31:04 _pixelsFileMapsSeq =
06:31:04 {
06:31:04 }
06:31:04 _pixelsFileMapsLoaded = False
06:31:04 _pixelsFileMapsCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _path = object #19 (::omero::RString)
06:31:04 {
06:31:04 _val = /
06:31:04 }
06:31:04 _repo = object #20 (::omero::RString)
06:31:04 {
06:31:04 _val = ScriptRepo
06:31:04 }
06:31:04 _size = object #21 (::omero::RLong)
06:31:04 {
06:31:04 _val = 168
06:31:04 }
06:31:04 _atime = <nil>
06:31:04 _mtime = <nil>
06:31:04 _ctime = <nil>
06:31:04 _hasher = object #22 (::omero::model::ChecksumAlgorithm)
06:31:04 {
06:31:04 _id = object #23 (::omero::RLong)
06:31:04 {
06:31:04 _val = 6
06:31:04 }
06:31:04 _details = <nil>
06:31:04 _loaded = False
06:31:04 _value = <nil>
06:31:04 }
06:31:04 _hash = object #24 (::omero::RString)
06:31:04 {
06:31:04 _val = 5b78d4faeafd77d48917bbac4223ce6b92afd35f
06:31:04 }
06:31:04 _mimetype = object #25 (::omero::RString)
06:31:04 {
06:31:04 _val = text/x-python
06:31:04 }
06:31:04 _filesetEntriesSeq =
06:31:04 {
06:31:04 }
06:31:04 _filesetEntriesLoaded = True
06:31:04 _annotationLinksSeq =
06:31:04 {
06:31:04 }
06:31:04 _annotationLinksLoaded = False
06:31:04 _annotationLinksCountPerOwner =
06:31:04 {
06:31:04 }
06:31:04 _name = object #26 (::omero::RString)
06:31:04 {
06:31:04 _val = 635bc5f1-3308-481b-8311-d1772085d7c2.py
06:31:04 }
06:31:04 }), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:31:04 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/decorators.py:82: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:31:04 log.warn(
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1313: DeprecationWarning: This method is deprecated as of OMERO 5.3.0
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1074: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use upload_plane instead
06:31:04 warnings.warn(
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:31:04 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:31:04 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1259: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use reset_rendering_settings
06:31:04 warnings.warn(
06:31:04 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:31:04 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration/junit-results.xml -
06:31:04 =========================== short test summary info ============================
06:31:04 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:31:04 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:31:04 + where 2 = NonZeroReturnCode('assert failed').rv
06:31:04 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:31:04 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:31:04 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:31:04 + where 2 = NonZeroReturnCode('assert failed').rv
06:31:04 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:31:04 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 recv() returned zero
06:31:04 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 recv() returned zero
06:31:04 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 recv() returned zero
06:31:04 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 recv() returned zero
06:31:04 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:31:04 recv() returned zero
06:31:04 FAILED test/integration/gatewaytest/test_user.py::TestUser::testSaveAs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 FAILED test/integration/test_util.py::TestUpgradeCheck::testReal - assert False is True
06:31:04 + where False = isUpgradeNeeded()
06:31:04 + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f0e8eb627c0>.isUpgradeNeeded
06:31:04 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnail - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testLinePlots - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProjections - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProperties - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testShortname - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testImageDate - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExport - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:31:04 = 11 failed, 1943 passed, 9 skipped, 36 deselected, 1928 warnings, 62 errors in 15302.25s (4:15:02) =
06:31:07 !! 10/25/24 07:31:06.701 error: 257 communicators not destroyed during global destruction.
06:31:07 Result: 1
06:31:07
06:31:07 BUILD SUCCESSFUL
06:31:07 Total time: 255 minutes 16 seconds
06:31:08 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroFS/build.xml integration -Dtestreports.dir=target/reports/integration
06:31:08 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:31:08 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/build.xml
06:31:11 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
06:31:11
06:31:11 python-integration:
06:31:11 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration
06:31:19 ============================= test session starts ==============================
06:31:19 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:31:19 cachedir: .pytest_cache
06:31:19 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:31:19 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:31:19 configfile: pytest.ini
06:31:19 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:31:19 collecting ... collected 1 item
06:31:19 test/integration/test_dbclient.py::TestDropBoxClient::test1 PASSED [100%]
06:31:19 =============================== warnings summary ===============================
06:31:19 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:31:19 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:31:19 import sys, string, imp, os, threading, warnings, datetime
06:31:19 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:31:19 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:31:19 warnings.warn(
06:31:19 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:31:19 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:31:19 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:31:19 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:31:19 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:31:19 from pkg_resources import DistributionNotFound, get_distribution
06:31:19 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:31:19 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration/junit-results.xml -
06:31:19 ======================== 1 passed, 4 warnings in 0.13s =========================
06:31:19
06:31:19 BUILD SUCCESSFUL
06:31:19 Total time: 11 seconds
06:31:19 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroWeb/build.xml integration -Dtestreports.dir=target/reports/integration
06:31:19 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:31:20 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/build.xml
06:31:20 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:31:20 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:31:20
06:31:20 python-integration:
06:31:20 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration
06:31:21 ============================= test session starts ==============================
06:31:21 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:31:21 cachedir: .pytest_cache
06:31:21 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:31:21 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:31:21 configfile: pytest.ini
06:31:21 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:31:25 collecting ... collected 430 items
06:31:50 test/integration/test_annotate.py::TestMapAnnotations::test_annotate_map PASSED [ 0%]
06:32:13 test/integration/test_annotate.py::TestTagging::test_create_tag PASSED [ 0%]
06:32:26 test/integration/test_annotate.py::TestTagging::test_annotate_tag PASSED [ 0%]
06:32:50 test/integration/test_annotate.py::TestBatchAnnotate::test_batch_annotate_tag PASSED [ 0%]
06:33:14 test/integration/test_annotate.py::TestFileAnnotations::test_add_fileannotations_form PASSED [ 1%]
06:33:23 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[1] PASSED [ 1%]
06:33:32 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[2] PASSED [ 1%]
06:33:55 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Plate] PASSED [ 1%]
06:34:04 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Image] PASSED [ 2%]
06:34:12 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Well] PASSED [ 2%]
06:34:21 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Channel] PASSED [ 2%]
06:34:30 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-foo] PASSED [ 2%]
06:34:38 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Plate] PASSED [ 3%]
06:34:47 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Image] PASSED [ 3%]
06:34:56 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Well] PASSED [ 3%]
06:35:04 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Channel] PASSED [ 3%]
06:35:13 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-foo] PASSED [ 3%]
06:35:22 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Plate] PASSED [ 4%]
06:35:30 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Image] PASSED [ 4%]
06:35:39 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Well] PASSED [ 4%]
06:35:40 test/integration/test_api_containers.py::TestContainers::test_container_crud[Project] PASSED [ 4%]
06:35:41 test/integration/test_api_containers.py::TestContainers::test_container_crud[Dataset] PASSED [ 5%]
06:35:42 test/integration/test_api_containers.py::TestContainers::test_container_crud[Screen] PASSED [ 5%]
06:35:53 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-True] PASSED [ 5%]
06:36:04 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-False] PASSED [ 5%]
06:36:14 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-True] PASSED [ 6%]
06:36:24 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-False] PASSED [ 6%]
06:36:33 test/integration/test_api_containers.py::TestContainers::test_screens PASSED [ 6%]
06:36:42 test/integration/test_api_containers.py::TestContainers::test_screen_plates_update PASSED [ 6%]
06:36:50 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype0] PASSED [ 6%]
06:36:59 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype1] PASSED [ 7%]
06:37:08 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype2] PASSED [ 7%]
06:37:17 test/integration/test_api_containers.py::TestContainers::test_spw_urls PASSED [ 7%]
06:37:26 test/integration/test_api_containers.py::TestContainers::test_spw_parent_urls PASSED [ 7%]
06:37:36 test/integration/test_api_containers.py::TestContainers::test_pdi_urls PASSED [ 8%]
06:37:47 test/integration/test_api_containers.py::TestContainers::test_pdi_parent_urls PASSED [ 8%]
06:38:02 test/integration/test_api_errors.py::TestErrors::test_save_post_no_id PASSED [ 8%]
06:38:02 test/integration/test_api_errors.py::TestErrors::test_save_put_id PASSED [ 8%]
06:38:02 test/integration/test_api_errors.py::TestErrors::test_marshal_type PASSED [ 9%]
06:38:02 test/integration/test_api_errors.py::TestErrors::test_invalid_parameter PASSED [ 9%]
06:38:02 test/integration/test_api_errors.py::TestErrors::test_marshal_validation PASSED [ 9%]
06:38:11 test/integration/test_api_errors.py::TestErrors::test_security_violation PASSED [ 9%]
06:38:20 test/integration/test_api_errors.py::TestErrors::test_validation_exception PASSED [ 10%]
06:38:22 test/integration/test_api_errors.py::TestErrors::test_project_validation PASSED [ 10%]
06:38:46 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-Experimenter] PASSED [ 10%]
06:38:55 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-ExperimenterGroup] PASSED [ 10%]
06:39:03 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-Experimenter] PASSED [ 10%]
06:39:12 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-ExperimenterGroup] PASSED [ 11%]
06:39:21 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[Experimenter] PASSED [ 11%]
06:39:29 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[ExperimenterGroup] PASSED [ 11%]
06:39:44 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_experimenters_groups PASSED [ 11%]
06:39:53 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_groups_experimenters PASSED [ 12%]
06:40:02 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_groups PASSED [ 12%]
06:40:11 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_experimenters PASSED [ 12%]
06:40:35 test/integration/test_api_images.py::TestImages::test_dataset_images PASSED [ 12%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_versions PASSED [ 13%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_base_url PASSED [ 13%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_base_url_versions_404 PASSED [ 13%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_login_get PASSED [ 13%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_login_csrf PASSED [ 13%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 14%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 14%]
06:40:50 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 14%]
06:40:51 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 14%]
06:40:59 test/integration/test_api_login.py::TestLogin::test_login_example PASSED [ 15%]
06:41:14 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_not_logged_in PASSED [ 15%]
06:41:23 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_no_results PASSED [ 15%]
06:41:31 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_user PASSED [ 15%]
06:41:43 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_user PASSED [ 16%]
06:41:51 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_group PASSED [ 16%]
06:42:00 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_groups PASSED [ 16%]
06:42:12 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_users PASSED [ 16%]
06:42:23 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_pagination PASSED [ 16%]
06:42:34 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_params PASSED [ 17%]
06:42:35 test/integration/test_api_projects.py::TestProjects::test_project_create_read PASSED [ 17%]
06:42:43 test/integration/test_api_projects.py::TestProjects::test_project_create_other_group PASSED [ 17%]
06:42:52 test/integration/test_api_projects.py::TestProjects::test_project_update PASSED [ 17%]
06:43:01 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Project] PASSED [ 18%]
06:43:10 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Dataset] PASSED [ 18%]
06:43:19 test/integration/test_api_projects.py::TestProjects::test_project_delete PASSED [ 18%]
06:43:43 test/integration/test_api_rois.py::TestContainers::test_image_rois PASSED [ 18%]
06:43:52 test/integration/test_api_rois.py::TestContainers::test_roi_delete PASSED [ 19%]
06:44:01 test/integration/test_api_rois.py::TestContainers::test_shapes PASSED [ 19%]
06:44:27 test/integration/test_api_wells.py::TestWells::test_plate_wells PASSED [ 19%]
06:44:38 test/integration/test_api_wells.py::TestWells::test_plate_index_wells PASSED [ 19%]
06:44:47 test/integration/test_api_wells.py::TestWells::test_well PASSED [ 20%]
06:45:09 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[user] PASSED [ 20%]
06:45:09 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[admin] PASSED [ 20%]
06:45:11 test/integration/test_chgrp.py::TestChgrp::test_chgrp_dry_run[user] PASSED [ 20%]
06:45:11 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[user] PASSED [ 20%]
06:45:12 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[admin] PASSED [ 21%]
06:45:13 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[user] PASSED [ 21%]
06:45:14 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[admin] PASSED [ 21%]
06:45:39 test/integration/test_chown.py::TestChown::test_chown_dry_run[admin] PASSED [ 21%]
06:45:39 test/integration/test_config.py::test_flattenProperties PASSED [ 22%]
06:45:44 test/integration/test_config.py::TestConfig::testDefaultConfig PASSED [ 22%]
06:45:47 test/integration/test_config.py::TestConfig::testDefaultConfigConversion PASSED [ 22%]
06:45:50 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-colleagues.label] PASSED [ 22%]
06:45:52 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-leaders.label] PASSED [ 23%]
06:45:55 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-everyone.label] PASSED [ 23%]
06:46:10 test/integration/test_containers.py::TestContainers::test_add_and_rename_container PASSED [ 23%]
06:46:12 test/integration/test_containers.py::TestContainers::test_add_owned_container PASSED [ 23%]
06:46:13 test/integration/test_containers.py::TestContainers::test_paste_move_remove_deletamany_image PASSED [ 23%]
06:46:16 test/integration/test_containers.py::TestContainers::test_edit_share PASSED [ 24%]
06:46:31 test/integration/test_csrf.py::TestCsrf::test_csrf_middleware_enabled PASSED [ 24%]
06:46:31 test/integration/test_csrf.py::TestCsrf::test_forgot_password PASSED [ 24%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_move_data PASSED [ 24%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_add_and_remove_comment PASSED [ 25%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_attach_file PASSED [ 25%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_edit_channel_names PASSED [ 25%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_copy_past_rendering_settings PASSED [ 25%]
06:46:32 test/integration/test_csrf.py::TestCsrf::test_reset_rendering_settings PASSED [ 26%]
06:46:33 test/integration/test_csrf.py::TestCsrf::test_apply_owners_rendering_settings PASSED [ 26%]
06:46:34 test/integration/test_csrf.py::TestCsrf::test_ome_tiff_script PASSED [ 26%]
06:46:34 test/integration/test_csrf.py::TestCsrf::test_script PASSED [ 26%]
06:46:34 test/integration/test_csrf.py::TestCsrf::test_myaccount PASSED [ 26%]
06:46:36 test/integration/test_csrf.py::TestCsrf::test_avatar PASSED [ 27%]
06:46:44 test/integration/test_csrf.py::TestCsrf::test_create_group PASSED [ 27%]
06:46:48 test/integration/test_csrf.py::TestCsrf::test_create_user PASSED [ 27%]
06:46:56 test/integration/test_csrf.py::TestCsrf::test_edit_group PASSED [ 27%]
06:47:02 test/integration/test_csrf.py::TestCsrf::test_edit_user PASSED [ 28%]
06:47:09 test/integration/test_csrf.py::TestCsrf::test_edit_group_by_owner PASSED [ 28%]
06:47:12 test/integration/test_csrf.py::TestCsrf::test_change_password PASSED [ 28%]
06:47:15 test/integration/test_csrf.py::TestCsrf::test_su PASSED [ 28%]
06:47:30 test/integration/test_decorators.py::TestShow::test_conn_cleanup PASSED [ 29%]
06:47:45 test/integration/test_download.py::TestDownload::test_spw_download PASSED [ 29%]
06:47:49 test/integration/test_download.py::TestDownload::test_orphaned_image_direct_download PASSED [ 29%]
06:47:52 test/integration/test_download.py::TestDownload::test_orphaned_image_download PASSED [ 29%]
06:47:55 test/integration/test_download.py::TestDownload::test_image_in_dataset_download PASSED [ 30%]
06:47:59 test/integration/test_download.py::TestDownload::test_image_in_dataset_in_project_download PASSED [ 30%]
06:47:59 test/integration/test_download.py::TestDownload::test_well_download PASSED [ 30%]
06:48:02 test/integration/test_download.py::TestDownload::test_attachment_download PASSED [ 30%]
06:48:17 test/integration/test_download.py::TestDownloadAs::test_download_image_as[jpeg] PASSED [ 30%]
06:48:18 test/integration/test_download.py::TestDownloadAs::test_download_image_as[png] PASSED [ 31%]
06:48:18 test/integration/test_download.py::TestDownloadAs::test_download_image_as[tif] PASSED [ 31%]
06:48:18 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[jpeg] PASSED [ 31%]
06:48:19 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[png] PASSED [ 31%]
06:48:19 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[tif] PASSED [ 32%]
06:48:54 test/integration/test_groups_users.py::TestGroupsUsers::test_group_users_menu PASSED [ 32%]
06:49:09 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[None] PASSED [ 32%]
06:49:10 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[10] PASSED [ 32%]
06:49:28 test/integration/test_history.py::TestHistory::test_history PASSED [ 33%]
06:49:28 test/integration/test_history.py::TestHistory::test_calendar_default PASSED [ 33%]
06:49:28 test/integration/test_history.py::TestHistory::test_calendar_month PASSED [ 33%]
06:49:43 test/integration/test_links.py::TestLinks::test_link_project_datasets PASSED [ 33%]
06:49:43 test/integration/test_links.py::TestLinks::test_link_datasets_images PASSED [ 33%]
06:49:44 test/integration/test_links.py::TestLinks::test_link_unlink_tagset_tags PASSED [ 34%]
06:49:44 test/integration/test_links.py::TestLinks::test_unlink_screen_plate PASSED [ 34%]
06:49:59 test/integration/test_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 34%]
06:49:59 test/integration/test_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 34%]
06:49:59 test/integration/test_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 35%]
06:49:59 test/integration/test_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 35%]
06:49:59 test/integration/test_login.py::TestLogin::test_get_login_page PASSED [ 35%]
06:50:05 test/integration/test_login.py::TestLogin::test_login_redirect[] PASSED [ 35%]
06:50:11 test/integration/test_login.py::TestLogin::test_login_redirect[/webclient/usertags/] PASSED [ 36%]
06:50:18 test/integration/test_login.py::TestLogin::test_login_view PASSED [ 36%]
06:50:36 test/integration/test_marshal.py::TestImgDetail::test_image_detail PASSED [ 36%]
06:50:52 test/integration/test_metadata.py::TestCoreMetadata::test_pixel_size_units PASSED [ 36%]
06:50:52 test/integration/test_metadata.py::TestCoreMetadata::test_none_pixel_size PASSED [ 36%]
06:51:07 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True] PASSED [ 37%]
06:51:07 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False] PASSED [ 37%]
06:51:07 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file PASSED [ 37%]
06:51:31 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[shrink] PASSED [ 37%]
06:51:40 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[trim] PASSED [ 38%]
06:51:48 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[expand] PASSED [ 38%]
06:51:57 test/integration/test_plategrid.py::TestPlateGrid::test_well_images PASSED [ 38%]
06:52:00 test/integration/test_plategrid.py::TestPlateGrid::test_instantiation PASSED [ 38%]
06:52:03 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_grid_size PASSED [ 39%]
06:52:05 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_thumbnail_url PASSED [ 39%]
06:52:08 test/integration/test_plategrid.py::TestPlateGrid::test_full_grid PASSED [ 39%]
06:52:11 test/integration/test_plategrid.py::TestPlateGrid::test_acquisition_date PASSED [ 39%]
06:52:13 test/integration/test_plategrid.py::TestPlateGrid::test_creation_date PASSED [ 40%]
06:52:16 test/integration/test_plategrid.py::TestPlateGrid::test_description PASSED [ 40%]
06:52:25 test/integration/test_plategrid.py::TestScreenPlateTables::test_get_plate_table PASSED [ 40%]
06:52:41 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_image PASSED [ 40%]
06:52:42 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url PASSED [ 40%]
06:52:43 test/integration/test_rendering.py::TestRendering::test_all_rendering_defs PASSED [ 41%]
06:53:01 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request PASSED [ 41%]
06:53:04 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_tile_argument PASSED [ 41%]
06:53:07 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_region_argument PASSED [ 41%]
06:53:13 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params PASSED [ 42%]
06:53:16 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_large_image PASSED [ 42%]
06:53:19 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_negative_resolution PASSED [ 42%]
06:53:22 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_invalid_resolution PASSED [ 42%]
06:53:32 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_big_image PASSED [ 43%]
06:53:38 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params PASSED [ 43%]
06:53:49 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params_big_image PASSED [ 43%]
06:54:01 test/integration/test_rendering.py::TestRenderImageRegion::test_render_birds_eye_view_big_image PASSED [ 43%]
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06:54:31 test/integration/test_scripts.py::TestScripts::test_script_ui_defaults PASSED [ 44%]
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06:54:59 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[SplitView] PASSED [ 45%]
06:55:00 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[Thumbnail] PASSED [ 45%]
06:55:01 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[MakeMovie] PASSED [ 45%]
06:55:16 test/integration/test_show.py::TestShow::test_empty_path PASSED [ 45%]
06:55:16 test/integration/test_show.py::TestShow::test_project_legacy_path PASSED [ 46%]
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06:55:16 test/integration/test_show.py::TestShow::test_project_dataset_legacy_path PASSED [ 46%]
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06:55:16 test/integration/test_show.py::TestShow::test_tag_redirect[1] PASSED [ 46%]
06:55:16 test/integration/test_show.py::TestShow::test_tag_redirect[2] PASSED [ 47%]
06:55:16 test/integration/test_show.py::TestShow::test_tagset_redirect[1] PASSED [ 47%]
06:55:16 test/integration/test_show.py::TestShow::test_tagset_redirect[2] PASSED [ 47%]
06:55:16 test/integration/test_show.py::TestShow::test_tag_legacy_path[1] PASSED [ 47%]
06:55:16 test/integration/test_show.py::TestShow::test_tag_legacy_path[2] PASSED [ 48%]
06:55:16 test/integration/test_show.py::TestShow::test_tagset_tag_legacy_path PASSED [ 48%]
06:55:16 test/integration/test_show.py::TestShow::test_image_legacy_path PASSED [ 48%]
06:55:16 test/integration/test_show.py::TestShow::test_screen_legacy_path PASSED [ 48%]
06:55:16 test/integration/test_show.py::TestShow::test_screen_plate_legacy_path PASSED [ 49%]
06:55:16 test/integration/test_show.py::TestShow::test_screen_plate_well_show PASSED [ 49%]
06:55:16 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[0] PASSED [ 49%]
06:55:16 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[1] PASSED [ 49%]
06:55:16 test/integration/test_show.py::TestShow::test_project_dataset_image_show PASSED [ 50%]
06:55:16 test/integration/test_show.py::TestShow::test_project_dataset_image_roi_show PASSED [ 50%]
06:55:16 test/integration/test_show.py::TestShow::test_project_by_id PASSED [ 50%]
06:55:16 test/integration/test_show.py::TestShow::test_project_by_name PASSED [ 50%]
06:55:16 test/integration/test_show.py::TestShow::test_tag_by_value[1] PASSED [ 50%]
06:55:16 test/integration/test_show.py::TestShow::test_tag_by_value[2] PASSED [ 51%]
06:55:16 test/integration/test_show.py::TestShow::test_tagset_tag_by_id PASSED [ 51%]
06:55:16 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 51%]
06:55:16 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 51%]
06:55:17 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:55:17 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:55:17 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:55:17 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:55:17 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 53%]
06:55:17 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 53%]
06:55:17 test/integration/test_show.py::TestShow::test_well_by_name[A10] PASSED [ 53%]
06:55:17 test/integration/test_show.py::TestShow::test_well_by_name[1J] PASSED [ 53%]
06:55:17 test/integration/test_show.py::TestShow::test_screen_plate_run_illegal_run PASSED [ 53%]
06:55:17 test/integration/test_show.py::TestShow::test_path_to_no_objects PASSED [ 54%]
06:55:17 test/integration/test_show.py::TestShow::test_project_dataset_image PASSED [ 54%]
06:55:17 test/integration/test_show.py::TestShow::test_project_dataset_images_pagination PASSED [ 54%]
06:55:17 test/integration/test_show.py::TestShow::test_orphaned_pagination PASSED [ 54%]
06:55:17 test/integration/test_show.py::TestShow::test_get_image_ids_dataset PASSED [ 55%]
06:55:17 test/integration/test_show.py::TestShow::test_image PASSED [ 55%]
06:55:17 test/integration/test_show.py::TestShow::test_roi PASSED [ 55%]
06:55:17 test/integration/test_show.py::TestShow::test_shape PASSED [ 55%]
06:55:17 test/integration/test_show.py::TestShow::test_well_image_shape PASSED [ 56%]
06:55:17 test/integration/test_show.py::TestShow::test_image_orphan PASSED [ 56%]
06:55:17 test/integration/test_show.py::TestShow::test_image_multi_link PASSED [ 56%]
06:55:17 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset PASSED [ 56%]
06:55:17 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset_project PASSED [ 56%]
06:55:17 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_project PASSED [ 57%]
06:55:17 test/integration/test_show.py::TestShow::test_dataset PASSED [ 57%]
06:55:17 test/integration/test_show.py::TestShow::test_dataset_multi_link PASSED [ 57%]
06:55:18 test/integration/test_show.py::TestShow::test_dataset_multi_link_restrict_project PASSED [ 57%]
06:55:18 test/integration/test_show.py::TestShow::test_dataset_orphan PASSED [ 58%]
06:55:18 test/integration/test_show.py::TestShow::test_project PASSED [ 58%]
06:55:18 test/integration/test_show.py::TestShow::test_acquisition PASSED [ 58%]
06:55:18 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate PASSED [ 58%]
06:55:18 test/integration/test_show.py::TestShow::test_acquisition_restrict_screen PASSED [ 59%]
06:55:18 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate_screen PASSED [ 59%]
06:55:18 test/integration/test_show.py::TestShow::test_well PASSED [ 59%]
06:55:18 test/integration/test_show.py::TestShow::test_well_multi PASSED [ 59%]
06:55:18 test/integration/test_show.py::TestShow::test_well_image PASSED [ 60%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_multi PASSED [ 60%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_plate_multi PASSED [ 60%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_screen_multi PASSED [ 60%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_multi PASSED [ 60%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_screen_multi PASSED [ 61%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_screen_multi PASSED [ 61%]
06:55:18 test/integration/test_show.py::TestShow::test_well_restrict_plate_screen_multi PASSED [ 61%]
06:55:18 test/integration/test_show.py::TestShow::test_plate PASSED [ 61%]
06:55:18 test/integration/test_show.py::TestShow::test_plate_restrict_screen PASSED [ 62%]
06:55:18 test/integration/test_show.py::TestShow::test_screen PASSED [ 62%]
06:55:21 test/integration/test_simple.py::TestSimple::testCurrentUser PASSED [ 62%]
06:55:24 test/integration/test_simple.py::TestSimple::testImport PASSED [ 62%]
06:55:49 test/integration/test_table.py::TestOmeroTables::test_table_html PASSED [ 63%]
06:55:58 test/integration/test_table.py::TestOmeroTables::test_table_pagination PASSED [ 63%]
06:56:08 test/integration/test_table.py::TestOmeroTables::test_table_query PASSED [ 63%]
06:56:17 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result0] PASSED [ 63%]
06:56:26 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result1] PASSED [ 63%]
06:56:35 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result2] PASSED [ 64%]
06:56:44 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result3] PASSED [ 64%]
06:56:53 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result4] PASSED [ 64%]
06:57:02 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result5] PASSED [ 64%]
06:57:11 test/integration/test_table.py::TestOmeroTables::test_table_metadata PASSED [ 65%]
06:57:20 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result0] PASSED [ 65%]
06:57:29 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result1] PASSED [ 65%]
06:57:38 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result0] PASSED [ 65%]
06:57:47 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result1] PASSED [ 66%]
06:57:56 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result2] PASSED [ 66%]
06:58:05 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity0] PASSED [ 66%]
06:58:14 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity1] PASSED [ 66%]
06:58:23 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity2] PASSED [ 66%]
06:58:32 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity3] PASSED [ 67%]
06:58:41 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity4] PASSED [ 67%]
06:58:50 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity5] PASSED [ 67%]
06:58:59 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity6] PASSED [ 67%]
06:59:08 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity7] PASSED [ 68%]
06:59:17 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity8] PASSED [ 68%]
06:59:27 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity9] PASSED [ 68%]
06:59:42 test/integration/test_tags.py::TestTags::test_create_tag_and_tagset PASSED [ 68%]
06:59:42 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tagset] PASSED [ 69%]
06:59:42 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tag] PASSED [ 69%]
06:59:42 test/integration/test_tags.py::TestTags::test_add_edit_and_remove_tag PASSED [ 69%]
06:59:58 test/integration/test_tags.py::TestTags::test_add_remove_tags PASSED [ 69%]
07:00:13 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[None] PASSED [ 70%]
07:00:13 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[100] PASSED [ 70%]
07:00:14 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[None] PASSED [ 70%]
07:00:14 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[100] PASSED [ 70%]
07:00:15 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb_set PASSED [ 70%]
07:00:30 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-1] PASSED [ 71%]
07:00:31 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-0] PASSED [ 71%]
07:00:32 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-1] PASSED [ 71%]
07:00:33 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-0] PASSED [ 71%]
07:00:43 test/integration/test_tree.py::TestTree::test_marshal_experimenter PASSED [ 72%]
07:00:46 test/integration/test_tree.py::TestTree::test_marshal_projects_no_results PASSED [ 72%]
07:00:48 test/integration/test_tree.py::TestTree::test_marshal_projects_user PASSED [ 72%]
07:00:54 test/integration/test_tree.py::TestTree::test_marshal_projects_another_user PASSED [ 72%]
07:00:56 test/integration/test_tree.py::TestTree::test_marshal_projects_another_group PASSED [ 73%]
07:00:59 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups PASSED [ 73%]
07:01:04 test/integration/test_tree.py::TestTree::test_marshal_projects_all_users PASSED [ 73%]
07:01:09 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups_all_users PASSED [ 73%]
07:01:12 test/integration/test_tree.py::TestTree::test_marshal_datasets_no_results PASSED [ 73%]
07:01:15 test/integration/test_tree.py::TestTree::test_marshal_datasets_user PASSED [ 74%]
07:01:20 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_user PASSED [ 74%]
07:01:23 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_group PASSED [ 74%]
07:01:26 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups PASSED [ 74%]
07:01:31 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_users PASSED [ 75%]
07:01:36 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups_all_users PASSED [ 75%]
07:01:39 test/integration/test_tree.py::TestTree::test_marshal_datasets_project PASSED [ 75%]
07:01:44 test/integration/test_tree.py::TestTree::test_marshal_datasets_project_crosslink PASSED [ 75%]
07:01:47 test/integration/test_tree.py::TestTree::test_marshal_images_no_results PASSED [ 76%]
07:01:49 test/integration/test_tree.py::TestTree::test_marshal_images_user PASSED [ 76%]
07:01:52 test/integration/test_tree.py::TestTree::test_marshal_images_user_pixels PASSED [ 76%]
07:01:55 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb0] PASSED [ 76%]
07:01:58 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb1] PASSED [ 76%]
07:02:03 test/integration/test_tree.py::TestTree::test_marshal_images_another_user PASSED [ 77%]
07:02:06 test/integration/test_tree.py::TestTree::test_marshal_images_another_group PASSED [ 77%]
07:02:08 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups PASSED [ 77%]
07:02:14 test/integration/test_tree.py::TestTree::test_marshal_images_all_users PASSED [ 77%]
07:02:19 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups_all_users PASSED [ 78%]
07:02:22 test/integration/test_tree.py::TestTree::test_marshal_images_dataset PASSED [ 78%]
07:02:24 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_no_pixels PASSED [ 78%]
07:02:27 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_date PASSED [ 78%]
07:02:32 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_crosslink PASSED [ 79%]
07:02:38 test/integration/test_tree.py::TestTree::test_marshal_images_share PASSED [ 79%]
07:02:40 test/integration/test_tree.py::TestTree::test_marshal_screens_no_results PASSED [ 79%]
07:02:43 test/integration/test_tree.py::TestTree::test_marshal_screens_user PASSED [ 79%]
07:02:48 test/integration/test_tree.py::TestTree::test_marshal_screens_another_user PASSED [ 80%]
07:02:51 test/integration/test_tree.py::TestTree::test_marshal_screens_another_group PASSED [ 80%]
07:02:53 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups PASSED [ 80%]
07:02:59 test/integration/test_tree.py::TestTree::test_marshal_screens_all_users PASSED [ 80%]
07:03:04 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups_all_users PASSED [ 80%]
07:03:06 test/integration/test_tree.py::TestTree::test_marshal_plates_no_results PASSED [ 81%]
07:03:09 test/integration/test_tree.py::TestTree::test_marshal_plates_user PASSED [ 81%]
07:03:14 test/integration/test_tree.py::TestTree::test_marshal_plates_another_user PASSED [ 81%]
07:03:17 test/integration/test_tree.py::TestTree::test_marshal_plates_another_group PASSED [ 81%]
07:03:20 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups PASSED [ 82%]
07:03:25 test/integration/test_tree.py::TestTree::test_marshal_plates_all_users PASSED [ 82%]
07:03:30 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups_all_users PASSED [ 82%]
07:03:33 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_no_results PASSED [ 82%]
07:03:35 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_user PASSED [ 83%]
07:03:40 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_user PASSED [ 83%]
07:03:43 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_group PASSED [ 83%]
07:03:46 test/integration/test_tree.py::TestTree::test_marshal_orphaned_no_results PASSED [ 83%]
07:03:49 test/integration/test_tree.py::TestTree::test_marshal_orphaned PASSED [ 83%]
07:03:54 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_user PASSED [ 84%]
07:03:56 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_group PASSED [ 84%]
07:03:59 test/integration/test_tree.py::TestTree::test_marshal_orphaned_all_groups PASSED [ 84%]
07:04:02 test/integration/test_tree.py::TestTree::test_marshal_tags_no_results PASSED [ 84%]
07:04:07 test/integration/test_tree.py::TestTree::test_marshal_tags_user PASSED [ 85%]
07:04:12 test/integration/test_tree.py::TestTree::test_marshal_tags_another_user PASSED [ 85%]
07:04:15 test/integration/test_tree.py::TestTree::test_marshal_tags_another_group PASSED [ 85%]
07:04:20 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups PASSED [ 85%]
07:04:25 test/integration/test_tree.py::TestTree::test_marshal_tags_all_users PASSED [ 86%]
07:04:31 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups_all_users PASSED [ 86%]
07:04:36 test/integration/test_tree.py::TestTree::test_marshal_tags_orphaned PASSED [ 86%]
07:04:41 test/integration/test_tree.py::TestTree::test_marshal_tags_tagset PASSED [ 86%]
07:04:44 test/integration/test_tree.py::TestTree::test_marshal_tagged_no_results PASSED [ 86%]
07:04:50 test/integration/test_tree.py::TestTree::test_marshal_tagged_user PASSED [ 87%]
07:04:55 test/integration/test_tree.py::TestTree::test_marshal_tagged_perms PASSED [ 87%]
07:04:58 test/integration/test_tree.py::TestTree::test_marshal_tagged_image_pixels PASSED [ 87%]
07:05:03 test/integration/test_tree.py::TestTree::test_marshal_shares_user PASSED [ 87%]
07:05:08 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user PASSED [ 88%]
07:05:14 test/integration/test_tree.py::TestTree::test_marshal_shares_user_owned PASSED [ 88%]
07:05:19 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user_owned PASSED [ 88%]
07:05:24 test/integration/test_tree.py::TestTree::test_marshal_discussions_user PASSED [ 88%]
07:05:29 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user PASSED [ 89%]
07:05:35 test/integration/test_tree.py::TestTree::test_marshal_discussions_user_owned PASSED [ 89%]
07:05:40 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user_owned PASSED [ 89%]
07:05:48 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag PASSED [ 89%]
07:05:54 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag_userB PASSED [ 90%]
07:05:59 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_userA_userB PASSED [ 90%]
07:06:05 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_projects PASSED [ 90%]
07:06:10 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_tags_comments_project PASSED [ 90%]
07:06:13 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_filter_by_namespace PASSED [ 90%]
07:06:41 test/integration/test_webadmin.py::TestUserSettings::test_user_settings_page PASSED [ 91%]
07:06:50 test/integration/test_webadmin.py::TestUserSettings::test_edit_settings PASSED [ 91%]
07:07:09 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[user] PASSED [ 91%]
07:07:14 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[restricted_administrator] PASSED [ 91%]
07:07:18 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[administrator] PASSED [ 92%]
07:07:24 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field0] PASSED [ 92%]
07:07:29 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field1] PASSED [ 92%]
07:07:35 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field2] PASSED [ 92%]
07:07:40 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field3] PASSED [ 93%]
07:07:46 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field4] PASSED [ 93%]
07:07:51 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field5] PASSED [ 93%]
07:07:56 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field6] PASSED [ 93%]
07:08:01 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege0] PASSED [ 93%]
07:08:05 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege1] PASSED [ 94%]
07:08:10 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege2] PASSED [ 94%]
07:08:14 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege3] PASSED [ 94%]
07:08:18 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege4] PASSED [ 94%]
07:08:23 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege5] PASSED [ 95%]
07:08:27 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege6] PASSED [ 95%]
07:08:31 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege7] PASSED [ 95%]
07:08:36 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege8] PASSED [ 95%]
07:08:40 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege9] PASSED [ 96%]
07:08:53 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges0] PASSED [ 96%]
07:09:07 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges1] PASSED [ 96%]
07:09:20 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges2] PASSED [ 96%]
07:09:34 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges3] PASSED [ 96%]
07:09:48 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges4] PASSED [ 97%]
07:10:07 test/integration/test_webadmin.py::TestExperimenters::test_restricted_admin_create_edit_user PASSED [ 97%]
07:10:40 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges0] PASSED [ 97%]
07:10:59 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges1] PASSED [ 97%]
07:11:19 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges2] PASSED [ 98%]
07:11:27 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions0] PASSED [ 98%]
07:11:36 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions1] PASSED [ 98%]
07:11:45 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions2] PASSED [ 98%]
07:11:54 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions3] PASSED [ 99%]
07:12:00 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field0] PASSED [ 99%]
07:12:07 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field1] PASSED [ 99%]
07:13:00 test/integration/test_webadmin.py::TestGroups::test_validation_errors PASSED [ 99%]
07:13:11 test/integration/test_webadmin.py::TestGroups::test_save_experimenter PASSED [100%]
07:13:11 =============================== warnings summary ===============================
07:13:11 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:13:11 import sys, string, imp, os, threading, warnings, datetime
07:13:11 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:13:11 warnings.warn(
07:13:11 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:13:11 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:13:11 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:13:11 from pkg_resources import DistributionNotFound, get_distribution
07:13:11 OmeroWeb/test/integration/test_annotate.py: 69 warnings
07:13:11 OmeroWeb/test/integration/test_api_containers.py: 177 warnings
07:13:11 OmeroWeb/test/integration/test_api_errors.py: 19 warnings
07:13:11 OmeroWeb/test/integration/test_api_experimenters_groups.py: 57 warnings
07:13:11 OmeroWeb/test/integration/test_api_images.py: 13 warnings
07:13:11 OmeroWeb/test/integration/test_api_login.py: 8 warnings
07:13:11 OmeroWeb/test/integration/test_api_projects.py: 87 warnings
07:13:11 OmeroWeb/test/integration/test_api_rois.py: 25 warnings
07:13:11 OmeroWeb/test/integration/test_api_wells.py: 20 warnings
07:13:11 OmeroWeb/test/integration/test_chgrp.py: 43 warnings
07:13:11 OmeroWeb/test/integration/test_chown.py: 16 warnings
07:13:11 OmeroWeb/test/integration/test_config.py: 5 warnings
07:13:11 OmeroWeb/test/integration/test_containers.py: 19 warnings
07:13:11 OmeroWeb/test/integration/test_csrf.py: 38 warnings
07:13:11 OmeroWeb/test/integration/test_decorators.py: 5 warnings
07:13:11 OmeroWeb/test/integration/test_download.py: 28 warnings
07:13:11 OmeroWeb/test/integration/test_groups_users.py: 10 warnings
07:13:11 OmeroWeb/test/integration/test_histogram.py: 7 warnings
07:13:11 OmeroWeb/test/integration/test_history.py: 12 warnings
07:13:11 OmeroWeb/test/integration/test_links.py: 20 warnings
07:13:11 OmeroWeb/test/integration/test_login.py: 13 warnings
07:13:11 OmeroWeb/test/integration/test_marshal.py: 6 warnings
07:13:11 OmeroWeb/test/integration/test_metadata.py: 16 warnings
07:13:11 OmeroWeb/test/integration/test_plategrid.py: 29 warnings
07:13:11 OmeroWeb/test/integration/test_rendering.py: 66 warnings
07:13:11 OmeroWeb/test/integration/test_scripts.py: 38 warnings
07:13:11 OmeroWeb/test/integration/test_show.py: 4 warnings
07:13:11 OmeroWeb/test/integration/test_table.py: 110 warnings
07:13:11 OmeroWeb/test/integration/test_tags.py: 26 warnings
07:13:11 OmeroWeb/test/integration/test_thumbnails.py: 68 warnings
07:13:11 OmeroWeb/test/integration/test_webadmin.py: 104 warnings
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/core/serializers/base.py:22: RemovedInDjango50Warning: PickleSerializer is deprecated due to its security risk. Use JSONSerializer instead.
07:13:11 warnings.warn(
07:13:11 OmeroWeb/test/integration/test_api_containers.py: 67 warnings
07:13:11 OmeroWeb/test/integration/test_api_images.py: 6 warnings
07:13:11 OmeroWeb/test/integration/test_api_wells.py: 24 warnings
07:13:11 OmeroWeb/test/integration/test_containers.py: 2 warnings
07:13:11 OmeroWeb/test/integration/test_csrf.py: 5 warnings
07:13:11 OmeroWeb/test/integration/test_download.py: 9 warnings
07:13:11 OmeroWeb/test/integration/test_histogram.py: 2 warnings
07:13:11 OmeroWeb/test/integration/test_metadata.py: 2 warnings
07:13:11 OmeroWeb/test/integration/test_rendering.py: 17 warnings
07:13:11 OmeroWeb/test/integration/test_scripts.py: 30 warnings
07:13:11 OmeroWeb/test/integration/test_thumbnails.py: 23 warnings
07:13:11 OmeroWeb/test/integration/test_tree.py: 20 warnings
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:13:11 converted_plane = byte_swapped_plane.tostring()
07:13:11 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_type
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:44: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:13:11 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:13:11 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_validation
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:97: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:13:11 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:13:11 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_security_violation
07:13:11 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_validation_exception
07:13:11 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_project_validation
07:13:11 OmeroWeb/test/integration/test_api_projects.py::TestProjects::test_project_delete
07:13:11 OmeroWeb/test/integration/test_api_rois.py::TestContainers::test_roi_delete
07:13:11 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:13:11 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:13:11 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:13:11 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True]
07:13:11 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False]
07:13:11 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omeroweb/testlib/__init__.py:478: DeprecationWarning: This method is deprecated as of OMERO 5.4.0. Use get
07:13:11 warnings.warn(
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:8856: DeprecationWarning: setActiveChannels() is deprecated in OMERO 5.4.0.Use set_active_channels
07:13:11 warnings.warn("setActiveChannels() is deprecated in OMERO 5.4.0."
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:13:11 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:9118: DeprecationWarning: Deprecated in 5.4.0. Use setChannelInverted()
07:13:11 warnings.warn("Deprecated in 5.4.0. Use setChannelInverted()",
07:13:11 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:13:11 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration/junit-results.xml -
07:13:11 =============== 430 passed, 1389 warnings in 2510.50s (0:41:50) ================
07:13:12 !! 10/25/24 08:13:12.675 error: 8 communicators not destroyed during global destruction.
07:13:12
07:13:12 BUILD SUCCESSFUL
07:13:12 Total time: 41 minutes 52 seconds
07:13:12 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -DMARK=broken -Dtestreports.dir=target/reports/broken
07:13:12 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:13:12 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
07:13:13 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:13:13 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:13:13
07:13:13 python-integration:
07:13:13 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken
07:13:14 ============================= test session starts ==============================
07:13:14 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
07:13:14 cachedir: .pytest_cache
07:13:14 django: version: 4.2.16, settings: omeroweb.settings (from ini)
07:13:14 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
07:13:14 configfile: pytest.ini
07:13:14 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
07:13:23 collecting ... collected 2061 items / 2025 deselected / 36 selected
07:13:25 test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly FAILED [ 2%]
07:13:42 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] FAILED [ 5%]
07:13:54 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] FAILED [ 8%]
07:13:56 test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory FAILED [ 11%]
07:14:13 test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript FAILED [ 13%]
07:14:17 test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations FAILED [ 16%]
07:14:18 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead FAILED [ 19%]
07:14:23 test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback FAILED [ 22%]
07:14:38 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts FAILED [ 25%]
07:14:41 test/integration/tablestest/test_service.py::TestTables::test2098 FAILED [ 27%]
07:14:41 test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile FAILED [ 30%]
07:14:41 test/integration/tablestest/test_service.py::TestTables::testReadEqual FAILED [ 33%]
07:14:41 test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange FAILED [ 36%]
07:14:46 test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset FAILED [ 38%]
07:14:49 test/integration/test_admin.py::TestAdmin::test9193 FAILED [ 41%]
07:14:52 test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 FAILED [ 44%]
07:14:57 test/integration/test_ishare.py::TestIShare::test1172 FAILED [ 47%]
07:15:01 test/integration/test_itimeline.py::TestITimeline::test1225 FAILED [ 50%]
07:15:03 test/integration/test_permissions.py::TestPermissions::test3136 FAILED [ 52%]
07:15:06 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit FAILED [ 55%]
07:15:09 test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink FAILED [ 58%]
07:15:12 test/integration/test_permissions.py::TestPermissions::testSaveBadLink FAILED [ 61%]
07:15:14 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser FAILED [ 63%]
07:15:17 test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic FAILED [ 66%]
07:15:17 test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession FAILED [ 69%]
07:15:17 test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save FAILED [ 72%]
07:15:23 test/integration/test_rawfilestore.py::TestRFS::testNoWrite FAILED [ 75%]
07:15:25 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile FAILED [ 77%]
07:15:38 test/integration/test_scripts.py::TestScripts::testParseErrorTicket2185 PASSED [ 80%]
07:15:53 test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 FAILED [ 83%]
07:15:57 test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 FAILED [ 86%]
07:16:12 test/integration/test_scripts.py::TestScripts::test3527 FAILED [ 88%]
07:16:17 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx FAILED [ 91%]
07:16:37 test/integration/test_tickets2000.py::TestTickets2000::test1184 FAILED [ 94%]
07:16:49 test/integration/test_tickets4000.py::TestTickets4000::test3138 PASSED [ 97%]
07:16:54 test/integration/test_tickets6000.py::TestTickets6000::test5684 PASSED [100%]
07:16:54 =================================== FAILURES ===================================
07:16:54 __________________________ TestFS.testRenameAdminOnly __________________________
07:16:54 self = <test.integration.clitest.test_fs.TestFS object at 0x7fb792dde2e0>
07:16:54 capsys = <_pytest.capture.CaptureFixture object at 0x7fb75f1da280>
07:16:54 @pytest.mark.broken(reason="fs rename is temporarily disabled")
07:16:54 def testRenameAdminOnly(self, capsys):
07:16:54 """Test fs rename is admin-only"""
07:16:54 self.args += ["rename", "Fileset:1"]
07:16:54 with pytest.raises(NonZeroReturnCode):
07:16:54 self.cli.invoke(self.args, strict=True)
07:16:54 out, err = capsys.readouterr()
07:16:54 > assert err.endswith("SecurityViolation: Admins only!\n")
07:16:54 E AssertionError: assert False
07:16:54 E + where False = <built-in method endswith of str object at 0x7fb75f1c6260>('SecurityViolation: Admins only!\n')
07:16:54 E + where <built-in method endswith of str object at 0x7fb75f1c6260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:16:54 test/integration/clitest/test_fs.py:118: AssertionError
07:16:54 _________ TestImport.testTargetInDifferentGroup[Dataset-test.fake--d] __________
07:16:54 self = <test.integration.clitest.test_import.TestImport object at 0x7fb792bb3940>
07:16:54 container = 'Dataset', filename = 'test.fake', arg = '-d'
07:16:54 tmpdir = local('/tmp/pytest-of-omero/pytest-23/testTargetInDifferentGroup_Dat0')
07:16:54 capfd = <_pytest.capture.CaptureFixture object at 0x7fb75eb48d90>
07:16:54 @pytest.mark.broken(reason="needs omero.group setting")
07:16:54 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:16:54 def testTargetInDifferentGroup(self, container, filename, arg,
07:16:54 tmpdir, capfd):
07:16:54 new_group = self.new_group(experimenters=[self.user])
07:16:54 self.sf.getAdminService().getEventContext() # Refresh
07:16:54 target = eval("omero.model."+container+"I")()
07:16:54 target.name = rstring('testTargetInDifferentGroup')
07:16:54 target = self.update.saveAndReturnObject(
07:16:54 target, {"omero.group": str(new_group.id.val)})
07:16:54 assert target.details.group.id.val == new_group.id.val
07:16:54 fakefile = tmpdir.join(filename)
07:16:54 fakefile.write('')
07:16:54 self.args += [str(fakefile)]
07:16:54 self.args += [arg, '%s' % target.id.val]
07:16:54 # Invoke CLI import command and retrieve stdout/stderr
07:16:54 > o, e = self.do_import(capfd)
07:16:54 test/integration/clitest/test_import.py:1216:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 test/integration/clitest/test_import.py:150: in do_import
07:16:54 self.cli.invoke(self.args, strict=True)
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:16:54 self.assertRC()
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <omero.cli.CLI object at 0x7fb7526647f0>
07:16:54 def assertRC(self):
07:16:54 if self.rv != 0:
07:16:54 > raise NonZeroReturnCode(self.rv, "assert failed")
07:16:54 E omero.cli.NonZeroReturnCode: assert failed
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:16:54 ----------------------------- Captured stdout call -----------------------------
07:16:54 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:16:54 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:16:54 2024-10-25 08:13:29,226 252 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:16:54 2024-10-25 08:13:29,241 267 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.1.0-SNAPSHOT revision: acd014fd1e7336432e42783dc32370dc8f70166c date: 25 October 2024
07:16:54 2024-10-25 08:13:29,291 317 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:16:54 2024-10-25 08:13:29,599 625 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:16:54 2024-10-25 08:13:29,666 692 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 65ms. (66ms total) [0 unknowns]
07:16:54 2024-10-25 08:13:29,701 727 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:16:54 2024-10-25 08:13:30,072 1098 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:16:54 2024-10-25 08:13:30,292 1318 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:16:54 2024-10-25 08:13:30,297 1323 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:16:54 2024-10-25 08:13:40,379 11405 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:16:54 2024-10-25 08:13:41,837 12863 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Dataset:1346
07:16:54 2024-10-25 08:13:41,848 12874 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@5851f36e
07:16:54 2024-10-25 08:13:41,849 12875 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:16:54 java.lang.RuntimeException: Failed to load target
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:16:54 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:16:54 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:16:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 Caused by: omero.SecurityViolation: null
07:16:54 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:16:54 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:16:54 at java.base/java.lang.Class.newInstance(Class.java:584)
07:16:54 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:16:54 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:16:54 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:16:54 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:16:54 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:16:54 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:16:54 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:16:54 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:16:54 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:16:54 ... 7 common frames omitted
07:16:54 2024-10-25 08:13:41,877 12903 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:16:54 ==> Summary
07:16:54 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:01.497
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.util.Resources:__init__.py:652 Starting
07:16:54 INFO omero.util.Resources:__init__.py:669 Halted
07:16:54 _ TestImport.testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] _
07:16:54 self = <test.integration.clitest.test_import.TestImport object at 0x7fb792bb3ac0>
07:16:54 container = 'Screen'
07:16:54 filename = 'SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake'
07:16:54 arg = '-r'
07:16:54 tmpdir = local('/tmp/pytest-of-omero/pytest-23/testTargetInDifferentGroup_Scr0')
07:16:54 capfd = <_pytest.capture.CaptureFixture object at 0x7fb75eb536a0>
07:16:54 @pytest.mark.broken(reason="needs omero.group setting")
07:16:54 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:16:54 def testTargetInDifferentGroup(self, container, filename, arg,
07:16:54 tmpdir, capfd):
07:16:54 new_group = self.new_group(experimenters=[self.user])
07:16:54 self.sf.getAdminService().getEventContext() # Refresh
07:16:54 target = eval("omero.model."+container+"I")()
07:16:54 target.name = rstring('testTargetInDifferentGroup')
07:16:54 target = self.update.saveAndReturnObject(
07:16:54 target, {"omero.group": str(new_group.id.val)})
07:16:54 assert target.details.group.id.val == new_group.id.val
07:16:54 fakefile = tmpdir.join(filename)
07:16:54 fakefile.write('')
07:16:54 self.args += [str(fakefile)]
07:16:54 self.args += [arg, '%s' % target.id.val]
07:16:54 # Invoke CLI import command and retrieve stdout/stderr
07:16:54 > o, e = self.do_import(capfd)
07:16:54 test/integration/clitest/test_import.py:1216:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 test/integration/clitest/test_import.py:150: in do_import
07:16:54 self.cli.invoke(self.args, strict=True)
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:16:54 self.assertRC()
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <omero.cli.CLI object at 0x7fb7526647f0>
07:16:54 def assertRC(self):
07:16:54 if self.rv != 0:
07:16:54 > raise NonZeroReturnCode(self.rv, "assert failed")
07:16:54 E omero.cli.NonZeroReturnCode: assert failed
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:16:54 ----------------------------- Captured stdout call -----------------------------
07:16:54 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:16:54 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:16:54 2024-10-25 08:13:42,719 235 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:16:54 2024-10-25 08:13:42,735 251 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.1.0-SNAPSHOT revision: acd014fd1e7336432e42783dc32370dc8f70166c date: 25 October 2024
07:16:54 2024-10-25 08:13:42,783 299 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:16:54 2024-10-25 08:13:43,085 601 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:16:54 2024-10-25 08:13:43,289 805 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 201ms. (204ms total) [0 unknowns]
07:16:54 2024-10-25 08:13:43,322 838 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:16:54 2024-10-25 08:13:43,674 1190 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:16:54 2024-10-25 08:13:43,877 1393 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:16:54 2024-10-25 08:13:43,883 1399 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:16:54 2024-10-25 08:13:53,955 11471 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:16:54 2024-10-25 08:13:54,178 11694 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Screen:232
07:16:54 2024-10-25 08:13:54,189 11705 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@2eafcf77
07:16:54 2024-10-25 08:13:54,189 11705 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:16:54 java.lang.RuntimeException: Failed to load target
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:16:54 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:16:54 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:16:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:16:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 Caused by: omero.SecurityViolation: null
07:16:54 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:16:54 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:16:54 at java.base/java.lang.Class.newInstance(Class.java:584)
07:16:54 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:16:54 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:16:54 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:16:54 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:16:54 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:16:54 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:16:54 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:16:54 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:16:54 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:16:54 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:16:54 ... 7 common frames omitted
07:16:54 2024-10-25 08:13:54,191 11707 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:16:54 ==> Summary
07:16:54 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.236
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.util.Resources:__init__.py:652 Starting
07:16:54 INFO omero.util.Resources:__init__.py:669 Halted
07:16:54 ________________________ TestHistory.testCreateHistory _________________________
07:16:54 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7fb792764c10>
07:16:54 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75eb31430>
07:16:54 @pytest.mark.broken(ticket="11494")
07:16:54 def testCreateHistory(self, gatewaywrapper):
07:16:54 # Login as user...
07:16:54 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:16:54 userId = gatewaywrapper.gateway.getEventContext().userId
07:16:54 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:16:54 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:16:54 start = int(round(time.time() * 1000)) - 1000
07:16:54 # Create Dataset in 'default' group
07:16:54 update = gatewaywrapper.gateway.getUpdateService()
07:16:54 new_ds = omero.model.DatasetI()
07:16:54 dataset_name = "history_test_%s" % uuid
07:16:54 new_ds.name = rstring(dataset_name)
07:16:54 new_ds = update.saveAndReturnObject(new_ds)
07:16:54 new_ds_Id = new_ds.id.val
07:16:54 # As Admin, create a second group with this user & upload script
07:16:54 gatewaywrapper.loginAsAdmin()
07:16:54 gid = gatewaywrapper.gateway.createGroup(
07:16:54 "history-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:16:54 # login as User
07:16:54 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:16:54 end = int(round(time.time() * 1000)) + 1000
07:16:54 self.searchHistory(gatewaywrapper.gateway, start, end)
07:16:54 # switch user into new group
07:16:54 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:16:54 omero.model.ExperimenterGroupI(gid, False))
07:16:54 assert switched, "Failed to switch into new group"
07:16:54 # Shouldn't be able to access Dataset...
07:16:54 > self.searchHistory(gatewaywrapper.gateway, start, end)
07:16:54 test/integration/gatewaytest/test_multi_group.py:96:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7fb792764c10>
07:16:54 gateway = <omero.gateway._BlitzGateway object at 0x7fb75c919460>
07:16:54 start = 1729840434467, end = 1729840436604, dtype = 'Dataset'
07:16:54 def searchHistory(self, gateway, start, end, dtype="Dataset"):
07:16:54 tm = gateway.getTimelineService()
07:16:54 count = tm.countByPeriod([dtype], rtime(int(start)),
07:16:54 rtime(int(end)), None, gateway.SERVICE_OPTS)
07:16:54 data = tm.getByPeriod([dtype], rtime(int(start)), rtime(int(end)),
07:16:54 None, True, gateway.SERVICE_OPTS)
07:16:54 logs = tm.getEventLogsByPeriod(rtime(start), rtime(end), None,
07:16:54 gateway.SERVICE_OPTS)
07:16:54 entityType = 'ome.model.containers.%s' % dtype
07:16:54 filteredLogs = [{'id': i.entityId.val, 'action': i.action.val}
07:16:54 for i in logs if i.entityType.val == entityType]
07:16:54 typeCount = count[dtype]
07:16:54 dataCount = len(data[dtype])
07:16:54 logCount = len(filteredLogs)
07:16:54 assert typeCount == dataCount, \
07:16:54 "Period count should match number of objects"
07:16:54 > assert logCount == dataCount, \
07:16:54 "Logs count should match number of objects"
07:16:54 E AssertionError: Logs count should match number of objects
07:16:54 E assert 1 == 0
07:16:54 test/integration/gatewaytest/test_multi_group.py:58: AssertionError
07:16:54 ------------------------------ Captured log setup ------------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=cf2753b8-e31a-4616-928c-e71e9281fd4c)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=8c95007e-d200-4d47-b081-fc5ab6beafc5)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=104f04a5-d1fa-4988-89ca-dcf3e19929c9)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=ba185da4-b798-4112-af48-c1f4f3c94252)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=4d30bbac-edc3-41af-a51d-f93d5df96d63)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=f589ee7b-998c-4bb5-9fc8-cc5922beb567)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=9b71df13-aafc-48ed-99b7-d6e28e9d37ea)
07:16:54 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <1d2a98de-ba6f-4a65-90bc-b14b882caaa7omero.api.IAdmin> lookupExperimenter(('history_test_user',), {})
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:16:54 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:16:54 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: history_test_user
07:16:54 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor628.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor628.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3370.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3369.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.lookupExperimenter_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:16:54 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No such experimenter: history_test_user
07:16:54 }
07:16:54 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <1d2a98de-ba6f-4a65-90bc-b14b882caaa7omero.api.IAdmin> lookupGroup(('rw_history',), {})
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:16:54 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:16:54 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_history
07:16:54 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor560.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor560.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor591.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor590.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.lookupGroup_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:16:54 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No such group: rw_history
07:16:54 }
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=249dd6bc-e11f-4c7b-874e-6f07a691f3de)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=7c3b57a4-8caf-4cd7-9fad-43dcc2ce7faf)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=00d6329f-a67d-4b6d-b7b3-701f13a2a9d1)
07:16:54 --------------------------- Captured stderr teardown ---------------------------
07:16:54 **
07:16:54 ---------------------------- Captured log teardown -----------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=92895ab1-aa84-4cb7-8dfc-fca24a305fa4)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=7b21a867-064e-4858-bef6-3385a9fee727)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=5387e930-c1a6-4959-a402-6e9466a27cd9)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ___________________________ TestScript.testRunScript ___________________________
07:16:54 self = <test.integration.gatewaytest.test_multi_group.TestScript object at 0x7fb79276eb80>
07:16:54 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75eab7b20>
07:16:54 @pytest.mark.broken(ticket="11610")
07:16:54 def testRunScript(self, gatewaywrapper):
07:16:54 # Login as user...
07:16:54 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:16:54 userId = gatewaywrapper.gateway.getEventContext().userId
07:16:54 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:16:54 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:16:54 # Create Dataset in 'default' group
07:16:54 update = gatewaywrapper.gateway.getUpdateService()
07:16:54 new_ds = omero.model.DatasetI()
07:16:54 dataset_name = "script_test_%s" % uuid
07:16:54 new_ds.name = rstring(dataset_name)
07:16:54 new_ds = update.saveAndReturnObject(new_ds)
07:16:54 new_ds_Id = new_ds.id.val
07:16:54 # As Admin, create a second group with this user & upload script
07:16:54 gatewaywrapper.loginAsAdmin()
07:16:54 gid = gatewaywrapper.gateway.createGroup(
07:16:54 "script-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:16:54 SCRIPT = """if True:
07:16:54 import omero.scripts
07:16:54 import omero.rtypes
07:16:54 client = omero.scripts.client("ticket8573", \
07:16:54 omero.scripts.Long("datasetId"), \
07:16:54 omero.scripts.String("datasetName", out=True))
07:16:54 ec = client.sf.getAdminService().getEventContext()
07:16:54 gid = ec.groupId
07:16:54 qs = client.sf.getQueryService()
07:16:54 ds_Id = client.getInput("datasetId").getValue()
07:16:54 print("Running test...") # generate stdout
07:16:54 try:
07:16:54 dataset = qs.find("Dataset", ds_Id)
07:16:54 ds_Name = dataset.name.val
07:16:54 print(ds_Name)
07:16:54 except Exception:
07:16:54 ds_Name = "Not Found"
07:16:54 client.setOutput("gid", omero.rtypes.rlong(gid))
07:16:54 client.setOutput("datasetName", omero.rtypes.rstring(ds_Name))
07:16:54 """
07:16:54 svc = gatewaywrapper.gateway.getScriptService()
07:16:54 scriptID = svc.uploadOfficialScript(
07:16:54 "/test/ticket8573/%s" % uuid, SCRIPT)
07:16:54 # switch user into new group
07:16:54 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:16:54 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:16:54 omero.model.ExperimenterGroupI(gid, False))
07:16:54 assert switched, "Failed to switch into new group"
07:16:54 # Shouldn't be able to access Dataset...
07:16:54 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:16:54 assert value is None
07:16:54 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup(
07:16:54 str(default_groupId))
07:16:54 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:16:54 assert value is not None
07:16:54 # run script
07:16:54 svc = gatewaywrapper.gateway.getScriptService()
07:16:54 > process = svc.runScript(scriptID, {"datasetId": rlong(new_ds_Id)},
07:16:54 None, gatewaywrapper.gateway.SERVICE_OPTS)
07:16:54 test/integration/gatewaytest/test_multi_group.py:188:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4833: in __call__
07:16:54 return self.handle_exception(e, *args, **kwargs)
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4830: in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 2cb73da5-2eb4-44bc-a921-63d682cdb701/df606d81-242c-4988-8abe-5720442bc7c1omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 scriptID = 5945
07:16:54 inputs = {'datasetId': object #0 (::omero::RLong)
07:16:54 {
07:16:54 _val = 1354
07:16:54 }}
07:16:54 waitSecs = None
07:16:54 _ctx = <ServiceOptsDict: {'omero.client.uuid': 'df606d81-242c-4988-8abe-5720442bc7c1', 'omero.session.uuid': '2cb73da5-2eb4-44bc-a921-63d682cdb701', 'omero.group': '3660'}>
07:16:54 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:54 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:54 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 E {
07:16:54 E serverStackTrace =
07:16:54 E serverExceptionClass =
07:16:54 E message = No processor available! [0 response(s)]
07:16:54 E processorCount = 0
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:54 ------------------------------ Captured log setup ------------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=3f7f8fcd-f4fd-4742-9e33-f15471c732b0)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=dfb54db1-04e9-4db9-8657-8bcf586e43a4)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=4e5968c7-adc7-47ea-a168-e879c1d92ffa)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=b63ea9d9-0ef6-4268-81fc-a843df34a882)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=2a5840bc-e08c-4898-b93c-c0359dbc2cad)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=e479e4ed-4e08-49e2-b811-6f158cd5bb64)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=b51f7697-4053-4215-907c-466948f3f25a)
07:16:54 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5059e669-c394-470b-a541-cc48ef2c49a8omero.api.IAdmin> lookupExperimenter(('script_test_user',), {})
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:16:54 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:16:54 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: script_test_user
07:16:54 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor628.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor628.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3370.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3369.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.lookupExperimenter_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:16:54 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No such experimenter: script_test_user
07:16:54 }
07:16:54 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <5059e669-c394-470b-a541-cc48ef2c49a8omero.api.IAdmin> lookupGroup(('rw_script',), {})
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:16:54 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:16:54 omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_script
07:16:54 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor560.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor560.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor591.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor590.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.lookupGroup_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:16:54 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No such group: rw_script
07:16:54 }
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=f631be37-c1ae-4fa4-aa40-bc7fc943f73f)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=e7e8b3c2-6eb3-4cc5-8ecd-07a95448c1d9)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=2cb73da5-2eb4-44bc-a921-63d682cdb701)
07:16:54 WARNING omero.gateway:__init__.py:4810 NoProcessorAvailable on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <df606d81-242c-4988-8abe-5720442bc7c1omero.api.IScript> runScript((5945, {'datasetId': object #0 (::omero::RLong)
07:16:54 {
07:16:54 _val = 1354
07:16:54 }}, None, <ServiceOptsDict: {'omero.client.uuid': 'df606d81-242c-4988-8abe-5720442bc7c1', 'omero.session.uuid': '2cb73da5-2eb4-44bc-a921-63d682cdb701', 'omero.group': '3660'}>), {})
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:16:54 return self.f(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 935, in runScript
07:16:54 return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:54 omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 {
07:16:54 serverStackTrace =
07:16:54 serverExceptionClass =
07:16:54 message = No processor available! [0 response(s)]
07:16:54 processorCount = 0
07:16:54 }
07:16:54 --------------------------- Captured stderr teardown ---------------------------
07:16:54 **
07:16:54 ---------------------------- Captured log teardown -----------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=8748d53c-80bc-4a92-9d51-ae3c9539e30a)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=5413e4f2-13f1-4fdc-9d52-6c109d17851b)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=a2703b29-7b54-41f1-961e-cbe7bc9e232c)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ___________________ TestPerformance.testListFileAnnotations ____________________
07:16:54 self = <test.integration.gatewaytest.test_performance.TestPerformance object at 0x7fb792777280>
07:16:54 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75c671dc0>
07:16:54 @pytest.mark.broken(ticket="11494")
07:16:54 def testListFileAnnotations(self, gatewaywrapper):
07:16:54 """
07:16:54 testListFileAnnotations: test speed of getObjects('FileAnnotation') vv
07:16:54 listFileAnnotations()
07:16:54 """
07:16:54 gatewaywrapper.loginAsAuthor()
07:16:54 updateService = gatewaywrapper.gateway.getUpdateService()
07:16:54 def createFileAnnotation(name, ns):
07:16:54 originalFile = omero.model.OriginalFileI()
07:16:54 originalFile.setName(rstring(name))
07:16:54 originalFile.setPath(rstring(name))
07:16:54 originalFile.setSize(rlong(0))
07:16:54 originalFile.setHash(rstring("Foo"))
07:16:54 originalFile = updateService.saveAndReturnObject(originalFile)
07:16:54 fa = omero.model.FileAnnotationI()
07:16:54 fa.setFile(originalFile)
07:16:54 fa.setNs(rstring(ns))
07:16:54 fa = updateService.saveAndReturnObject(fa)
07:16:54 return fa.id.val
07:16:54 ns = "omero.gatewaytest.PerformanceTest.testListFileAnnotations"
07:16:54 fileCount = 250
07:16:54 fileAnnIds = [createFileAnnotation("testListFileAnnotations%s" % i,
07:16:54 ns) for i in range(fileCount)]
07:16:54 # test speed of listFileAnnotations
07:16:54 startTime = time.time()
07:16:54 fileCount = 0
07:16:54 fileAnns = gatewaywrapper.gateway.listFileAnnotations(toInclude=[ns])
07:16:54 for fa in fileAnns:
07:16:54 fa.getFileName()
07:16:54 fileCount += 1
07:16:54 t1 = time.time() - startTime
07:16:54 print("listFileAnnotations for %d files = %s secs" % (fileCount, t1))
07:16:54 # Typically 1.4 secs
07:16:54 # test speed of getOjbects("Annotation") - lazy loading file names
07:16:54 startTime = time.time()
07:16:54 fileCount = 0
07:16:54 fileAnns = gatewaywrapper.gateway.getObjects(
07:16:54 "FileAnnotation", attributes={'ns': ns})
07:16:54 for fa in fileAnns:
07:16:54 fa.getFileName()
07:16:54 fileCount += 1
07:16:54 t2 = time.time() - startTime
07:16:54 print("getObjects, lazy loading file names for %d files = %s secs"
07:16:54 % (fileCount, t2)) # Typically 2.8 secs
07:16:54 # test speed of getOjbects("Annotation") - NO loading file names
07:16:54 startTime = time.time()
07:16:54 fileCount = 0
07:16:54 fileAnns = gatewaywrapper.gateway.getObjects(
07:16:54 "FileAnnotation", attributes={'ns': ns})
07:16:54 for fa in fileAnns:
07:16:54 fa.getId()
07:16:54 fileCount += 1
07:16:54 t3 = time.time() - startTime
07:16:54 print("getObjects, NO file names for %d files = %s secs"
07:16:54 % (fileCount, t3)) # Typically 0.4 secs
07:16:54 > assert t1 < t2, "Blitz listFileAnnotations() should be faster " \
07:16:54 "than getObjects('FileAnnotation')"
07:16:54 E AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:16:54 E assert 0.30582666397094727 < 0.16650700569152832
07:16:54 test/integration/gatewaytest/test_performance.py:91: AssertionError
07:16:54 ------------------------------ Captured log setup ------------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=2a855b87-5e42-4ea8-8f6c-7dcd373afe91)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=85635228-1a03-4d20-af71-66443b9b705c)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=1555f26a-fa06-47ab-b360-29efd89d9a06)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=813525ec-39e4-4814-bcd4-7d9a1675640f)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=957f1b1d-df00-4b19-bbf5-0f173e1cc2d3)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=8d180447-d773-4b06-b98f-90cf303d2079)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ----------------------------- Captured stdout call -----------------------------
07:16:54 listFileAnnotations for 250 files = 0.30582666397094727 secs
07:16:54 getObjects, lazy loading file names for 250 files = 0.16650700569152832 secs
07:16:54 getObjects, NO file names for 250 files = 0.1560969352722168 secs
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=23db345f-1cf7-4bc6-bf9d-f4cfe3997997)
07:16:54 --------------------------- Captured stderr teardown ---------------------------
07:16:54 **
07:16:54 ---------------------------- Captured log teardown -----------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=790dc08e-4463-44fa-843a-a39e6772deb5)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=da4638c2-c080-4750-8258-81384f50c25f)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=bdc47405-5e50-400b-a39f-7e8b59ce8814)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 _________________________ TestUser.testCrossGroupRead __________________________
07:16:54 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7fb792750b80>
07:16:54 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75f0d1d60>
07:16:54 @pytest.mark.broken(ticket="11545")
07:16:54 def testCrossGroupRead(self, gatewaywrapper):
07:16:54 gatewaywrapper.loginAsAuthor()
07:16:54 p = gatewaywrapper.getTestProject()
07:16:54 assert str(p.getDetails().permissions)[4] == '-'
07:16:54 d = p.getDetails()
07:16:54 g = d.getGroup()
07:16:54 gatewaywrapper.loginAsUser()
07:16:54 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup('-1')
07:16:54 > assert not g.getId() in \
07:16:54 gatewaywrapper.gateway.getEventContext().memberOfGroups
07:16:54 E assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:16:54 E + where 2719 = getId()
07:16:54 E + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:16:54 E + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 48685263-37ae-40c1-b954-1c8905207f23\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:16:54 E + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 48685263-37ae-40c1-b954-1c8905207f23\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:16:54 E + where getEventContext = <omero.gateway._BlitzGateway object at 0x7fb7926b39a0>.getEventContext
07:16:54 E + where <omero.gateway._BlitzGateway object at 0x7fb7926b39a0> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75f0d1d60>.gateway
07:16:54 test/integration/gatewaytest/test_user.py:127: AssertionError
07:16:54 ------------------------------ Captured log setup ------------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=f36387fd-7b91-4d9a-8f41-716d5172771f)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=c7dfc93e-b191-46cc-a49a-c9d9c5efc182)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=d6781596-abf9-45cb-84f3-db4bd46b9321)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=e3366367-2393-4f8b-848c-853b22371a0d)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=4ed4d4da-72dd-42e0-9233-9f6baee0fcfe)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=89a16c3c-b6d8-4edb-942a-bacedca18905)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=d3a806d0-7e26-47d2-b179-9bed3f6c9b19)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=48685263-37ae-40c1-b954-1c8905207f23)
07:16:54 --------------------------- Captured stderr teardown ---------------------------
07:16:54 **
07:16:54 ---------------------------- Captured log teardown -----------------------------
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=4c9f928e-7ba5-4199-a10d-8acf09136229)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=d9cd5624-a9fd-4af3-9400-819330276496)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 INFO omero.gateway:__init__.py:2243 created connection (uuid=64d5da45-65dc-4747-8a34-555b28a8dd0b)
07:16:54 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:16:54 _________________________ TestPing.testProcessCallback _________________________
07:16:54 self = <test.integration.scriptstest.test_ping.TestPing object at 0x7fb792685f70>
07:16:54 @pytest.mark.broken(ticket="11494")
07:16:54 def testProcessCallback(self):
07:16:54 callback = CallbackI()
07:16:54 id = self.client.getCommunicator().stringToIdentity(str(uuid.uuid4()))
07:16:54 cb = self.client.getAdapter().add(callback, id)
07:16:54 cb = omero.grid.ProcessCallbackPrx.uncheckedCast(cb)
07:16:54 p = self._getProcessor()
07:16:54 params = p.params()
07:16:54 assert params.stdoutFormat
07:16:54 process = p.execute(rmap({}))
07:16:54 process.registerCallback(cb)
07:16:54 self.assertSuccess(p, process)
07:16:54 > assert len(callback.finish) > 0
07:16:54 E assert 0 > 0
07:16:54 E + where 0 = len([])
07:16:54 E + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:16:54 test/integration/scriptstest/test_ping.py:214: AssertionError
07:16:54 ______________________ TestScriptRepo.testGetGroupScripts ______________________
07:16:54 self = <test.integration.scriptstest.test_repo.TestScriptRepo object at 0x7fb792691a90>
07:16:54 @pytest.mark.broken(ticket="11494")
07:16:54 def testGetGroupScripts(self):
07:16:54 scriptService = self.sf.getScriptService()
07:16:54 client = self.new_client(self.group)
07:16:54 sid = client.sf.getScriptService().uploadScript(
07:16:54 "/test/otheruser.py",
07:16:54 """if True:
07:16:54 import omero, omero.scripts as OS
07:16:54 OS.client("testGetGroupScripts")
07:16:54 """)
07:16:54 myGroupScripts = scriptService.getUserScripts(
07:16:54 [omero.model.ExperimenterGroupI(self.group.id.val, False)])
07:16:54 > assert sid in [x.id.val for x in myGroupScripts]
07:16:54 E assert 6201 in []
07:16:54 test/integration/scriptstest/test_repo.py:78: AssertionError
07:16:54 _____________________________ TestTables.test2098 ______________________________
07:16:54 self = <test_service.TestTables object at 0x7fb78bc4bee0>
07:16:54 @pytest.mark.broken(ticket="11534")
07:16:54 def test2098(self):
07:16:54 """
07:16:54 Creates and downloads an HDF file and checks
07:16:54 that its size and hash match whats in the db
07:16:54 """
07:16:54 grid = self.client.sf.sharedResources()
07:16:54 table = grid.newTable(1, "/test")
07:16:54 assert table
07:16:54 lc = columns.LongColumnI('lc', 'desc', [1])
07:16:54 file = None
07:16:54 try:
07:16:54 file = table.getOriginalFile()
07:16:54 assert file
07:16:54 table.initialize([lc])
07:16:54 table.addData([lc])
07:16:54 finally:
07:16:54 # Not deleting since queried
07:16:54 table.close()
07:16:54 # Reload the file
07:16:54 file = self.client.sf.getQueryService().get(
07:16:54 "OriginalFile", file.id.val)
07:16:54 # Check values
07:16:54 > p = path.path(self.tmpfile())
07:16:54 E AttributeError: type object 'path' has no attribute 'path'
07:16:54 test/integration/tablestest/test_service.py:154: AttributeError
07:16:54 _________________________ TestTables.testReadOnlyFile __________________________
07:16:54 self = <test_service.TestTables object at 0x7fb78bbdbf70>
07:16:54 @pytest.mark.broken(ticket="unimplemented")
07:16:54 def testReadOnlyFile(self):
07:16:54 """
07:16:54 Create an HDF5 file on the server, and then mark it read-only.
07:16:54 The server should still allow you to load & read that file.
07:16:54 """
07:16:54 self.testBlankTable() # ofile
07:16:54 > filename = self.unique_dir + "/file.txt"
07:16:54 E AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:16:54 test/integration/tablestest/test_service.py:661: AttributeError
07:16:54 ___________________________ TestTables.testReadEqual ___________________________
07:16:54 self = <test_service.TestTables object at 0x7fb78bbe8190>
07:16:54 twoColumnFiveRowTable = da2e8f9f-49e8-4a28-99c9-2c6db66d1e26/Table-0f5c0999-b4b4-4b1b-93de-75721c44d7d8 -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 @pytest.mark.broken(reason="start=0,end=0 to be reviewed")
07:16:54 def testReadEqual(self, twoColumnFiveRowTable):
07:16:54 # start=0, end=0 has a special contract
07:16:54 data = twoColumnFiveRowTable.read([0], 0, 0)
07:16:54 assert 1 == len(data.columns)
07:16:54 > assert [1] == data.columns[0].values
07:16:54 E assert [1] == [1, 2, 3, 4, 5]
07:16:54 E
07:16:54 E Right contains 4 more items, first extra item: 2
07:16:54 E
07:16:54 E Full diff:
07:16:54 E [
07:16:54 E 1,
07:16:54 E - 2,
07:16:54 E - 3,
07:16:54 E - 4,
07:16:54 E - 5,
07:16:54 E ]
07:16:54 test/integration/tablestest/test_service.py:967: AssertionError
07:16:54 ________________________ TestTables.testReadOutOfRange _________________________
07:16:54 self = <test_service.TestTables object at 0x7fb78bbe8910>
07:16:54 twoColumnFiveRowTable = da2e8f9f-49e8-4a28-99c9-2c6db66d1e26/Table-9af35ab6-9a26-4f3d-a2ed-786be65c5862 -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 @pytest.mark.broken(reason="need to be reviewed")
07:16:54 def testReadOutOfRange(self, twoColumnFiveRowTable):
07:16:54 # [1, 2, 3, 4, 5][-1:5] = [5]
07:16:54 data = twoColumnFiveRowTable.read([0], -1, 5)
07:16:54 assert 1 == len(data.columns)
07:16:54 assert [5] == data.columns[0].values
07:16:54 > assert [4] == data.rowNumbers
07:16:54 E assert [4] == [-1, 0, 1, 2, 3, 4]
07:16:54 E
07:16:54 E At index 0 diff: 4 != -1
07:16:54 E Right contains 5 more items, first extra item: 0
07:16:54 E
07:16:54 E Full diff:
07:16:54 E [
07:16:54 E - -1,
07:16:54 E - 0,
07:16:54 E - 1,
07:16:54 E - 2,
07:16:54 E - 3,
07:16:54 E 4,
07:16:54 E ]
07:16:54 test/integration/tablestest/test_service.py:1015: AssertionError
07:16:54 ____________________ TestAdmin.testChangePasswordWhenUnset _____________________
07:16:54 self = <test.integration.test_admin.TestAdmin object at 0x7fb78bbfa460>
07:16:54 @pytest.mark.broken(reason="Empty password disabled by config",
07:16:54 ticket="3201")
07:16:54 def testChangePasswordWhenUnset(self):
07:16:54 """
07:16:54 Shows that it's possible to use the
07:16:54 changePasswordWithOldPassword when
07:16:54 previously no password was set.
07:16:54 See ticket:3201
07:16:54 """
07:16:54 client = self.new_client()
07:16:54 admin = client.sf.getAdminService()
07:16:54 # By setting the user's password to the empty string
07:16:54 # any password will be allowed as the old password
07:16:54 admin.changePassword(rstring(""))
07:16:54 > admin.changePasswordWithOldPassword(rstring("IGNORED"), rstring("ome"))
07:16:54 test/integration/test_admin.py:118:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = e9f2c159-ee27-4b15-b769-a2590dfb2fc7/69b0ee33-2245-47e6-9b3e-42addb3eb377omero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 oldPassword = object #0 (::omero::RString)
07:16:54 {
07:16:54 _val = IGNORED
07:16:54 }
07:16:54 newPassword = object #0 (::omero::RString)
07:16:54 {
07:16:54 _val = ome
07:16:54 }, _ctx = None
07:16:54 def changePasswordWithOldPassword(self, oldPassword, newPassword, _ctx=None):
07:16:54 > return _M_omero.api.IAdmin._op_changePasswordWithOldPassword.invoke(self, ((oldPassword, newPassword), _ctx))
07:16:54 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:16:54 E at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy99.changePasswordWithOldPassword_async(Unknown Source)
07:16:54 E at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:16:54 E at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:16:54 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 E message = Old password is invalid
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2460: SecurityViolation
07:16:54 ______________________________ TestAdmin.test9193 ______________________________
07:16:54 self = <test.integration.test_admin.TestAdmin object at 0x7fb78bbfe3a0>
07:16:54 @pytest.mark.broken(reason="Is this test still valid?", ticket="11465")
07:16:54 def test9193(self):
07:16:54 # Test the removal of removing users
07:16:54 # from a group when the group in question
07:16:54 # may be their last (i.e. default) group
07:16:54 g = self.new_group()
07:16:54 u = self.new_user(group=g)
07:16:54 # Test removing the default group
07:16:54 > self.remove_experimenters(g, [u])
07:16:54 test/integration/test_admin.py:240:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:247: in remove_experimenters
07:16:54 admin.removeGroups(user, [group])
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = d8ce79d1-1b10-4ac2-8cd5-ceb59ae350ff/9f89786c-4841-494d-8776-ef742eadace6omero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 user = object #0 (::omero::model::Experimenter)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 4726
07:16:54 }
07:16:54 _d...annotationLinksSeq =
07:16:54 {
07:16:54 }
07:16:54 _annotationLinksLoaded = False
07:16:54 _annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 }
07:16:54 groups = [object #0 (::omero::model::ExperimenterGroup)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 3667
07:16:54 }
07:16:54 ...{
07:16:54 }
07:16:54 _annotationLinksLoaded = False
07:16:54 _annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _description = <nil>
07:16:54 }]
07:16:54 _ctx = None
07:16:54 def removeGroups(self, user, groups, _ctx=None):
07:16:54 > return _M_omero.api.IAdmin._op_removeGroups.invoke(self, ((user, groups), _ctx))
07:16:54 E omero.ValidationException: exception ::omero::ValidationException
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:54 E at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor624.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor624.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3266.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3265.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy99.removeGroups_async(Unknown Source)
07:16:54 E at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:16:54 E at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:16:54 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.ValidationException
07:16:54 E message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2011: ValidationException
07:16:54 _________________ TestFiles.testUploadDifferentSizeTicket2337 __________________
07:16:54 self = <test.integration.test_files.TestFiles object at 0x7fb78bb96880>
07:16:54 @pytest.mark.broken(ticket="11610")
07:16:54 def testUploadDifferentSizeTicket2337(self):
07:16:54 uploaded = tmpfile()
07:16:54 ofile = self.client.upload(str(uploaded), type="text/plain")
07:16:54 uploaded.write_lines(["abc", "def"]) # Shorten
07:16:54 > ofile = self.client.upload(
07:16:54 str(uploaded), type="text/plain", ofile=ofile)
07:16:54 test/integration/test_files.py:62:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/clients.py:878: in upload
07:16:54 ofile = up.saveAndReturnObject(ofile)
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = ecb57f2c-b6d2-4545-8c1c-f78bf5ca7a67/cebb3631-2100-4514-9aaa-f91362c4a65eomero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 obj = object #0 (::omero::model::OriginalFile)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 6206
07:16:54 }
07:16:54 _d...ksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _name = object #60 (::omero::RString)
07:16:54 {
07:16:54 _val = omerozi7w8miw.tmp
07:16:54 }
07:16:54 }
07:16:54 _ctx = None
07:16:54 def saveAndReturnObject(self, obj, _ctx=None):
07:16:54 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:54 E omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124674 to ome.model.meta.Event:Id_124673
07:16:54 E You may need to reload the object before continuing.
07:16:54 E at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:16:54 E at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:16:54 E at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:16:54 E at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:16:54 E at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:16:54 E at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:16:54 E at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:16:54 E at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:16:54 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:16:54 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:16:54 E at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:16:54 E at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:16:54 E at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.OptimisticLockException
07:16:54 E message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124674 to ome.model.meta.Event:Id_124673
07:16:54 E You may need to reload the object before continuing.
07:16:54 E backOff = 0
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: OptimisticLockException
07:16:54 _____________________________ TestIShare.test1172 ______________________________
07:16:54 self = <test.integration.test_ishare.TestIShare object at 0x7fb78baee0d0>
07:16:54 @pytest.mark.broken(reason="shares are image-centric for now")
07:16:54 def test1172(self):
07:16:54 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:16:54 share = self.root.sf.getShareService()
07:16:54 query = self.root.sf.getQueryService()
07:16:54 # create user
07:16:54 client_share1, user1 = self.new_client_and_user()
07:16:54 # create dataset with image
07:16:54 ds = self.make_dataset(name="dataset-%s" % uuid, client=self.root)
07:16:54 img = self.new_image(name='test-img in dataset-%s' % uuid)
07:16:54 self.link(ds, img, client=self.root)
07:16:54 items = list()
07:16:54 p = omero.sys.Parameters()
07:16:54 p.map = {"oid": ds.id}
07:16:54 sql = (
07:16:54 "select ds from Dataset ds "
07:16:54 "join fetch ds.details.owner "
07:16:54 "join fetch ds.details.group "
07:16:54 "left outer join fetch ds.imageLinks dil "
07:16:54 "left outer join fetch dil.child i "
07:16:54 "where ds.id=:oid")
07:16:54 items.extend(query.findAllByQuery(sql, p))
07:16:54 assert 1 == len(items)
07:16:54 # members
07:16:54 p.map["eid"] = rlong(user1.id.val)
07:16:54 sql = ("select e from Experimenter e "
07:16:54 "where e.id =:eid order by e.omeName")
07:16:54 ms = query.findAllByQuery(sql, p)
07:16:54 sid = share.createShare(("test-share-%s" % uuid),
07:16:54 rtime(int(time.time() * 1000 + 86400)),
07:16:54 items, ms, [], True)
07:16:54 # USER RETRIEVAL
07:16:54 # login as user1
07:16:54 share1 = client_share1.sf.getShareService()
07:16:54 query1 = client_share1.sf.getQueryService()
07:16:54 content = share1.getContents(sid)
07:16:54 # Content now contains just the dataset with nothing loaded
07:16:54 assert 1 == len(content)
07:16:54 # get shared dataset and image when share is activated
07:16:54 share1.activate(sid)
07:16:54 # retrieve dataset
07:16:54 p = omero.sys.Parameters()
07:16:54 p.map = {"ids": rlist([ds.id])}
07:16:54 sql = (
07:16:54 "select ds from Dataset ds "
07:16:54 "join fetch ds.details.owner "
07:16:54 "join fetch ds.details.group "
07:16:54 "left outer join fetch ds.imageLinks dil "
07:16:54 "left outer join fetch dil.child i "
07:16:54 "where ds.id in (:ids) order by ds.name")
07:16:54 try:
07:16:54 res1 = query1.findAllByQuery(sql, p)
07:16:54 assert False, "This should throw an exception"
07:16:54 except Exception:
07:16:54 pass
07:16:54 # Now we add all the other elements to the share to prevent
07:16:54 # the security violation
07:16:54 #
07:16:54 # Not working imgs = cntar.getImages("Dataset",[ds.id.val], None)
07:16:54 img = query.findByQuery(
07:16:54 "select i from Image i join fetch i.datasetLinks dil "
07:16:54 "join dil.parent d where d.id = %s " % ds.id.val, None)
07:16:54 assert img
07:16:54 share.addObject(sid, img)
07:16:54 share.addObjects(sid, img.copyDatasetLinks())
07:16:54 assert 3 == len(share.getContents(sid))
07:16:54 # And try again to load them
07:16:54 share1.activate(sid)
07:16:54 res1 = query1.findAllByQuery(sql, p)
07:16:54 > assert len(res1) == 1
07:16:54 E assert 0 == 1
07:16:54 E + where 0 = len([])
07:16:54 test/integration/test_ishare.py:381: AssertionError
07:16:54 ____________________________ TestITimeline.test1225 ____________________________
07:16:54 self = <test.integration.test_itimeline.TestITimeline object at 0x7fb78bb046d0>
07:16:54 @pytest.mark.broken(ticket="1225")
07:16:54 def test1225(self):
07:16:54 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:16:54 update = self.root.sf.getUpdateService()
07:16:54 timeline = self.root.sf.getTimelineService()
07:16:54 query = self.root.sf.getQueryService()
07:16:54 # create dataset
07:16:54 to_save = list()
07:16:54 for i in range(0, 10):
07:16:54 to_save.append(self.new_dataset(name="ds-%i-%s" % (i, uuid)))
07:16:54 dss = update.saveAndReturnArray(to_save)
07:16:54 # create tag
07:16:54 for i in range(0, 10):
07:16:54 ds1 = query.get("Dataset", dss[i].id.val)
07:16:54 ann = omero.model.TagAnnotationI()
07:16:54 ann.textValue = rstring('tag-%i-%s' % (i, uuid))
07:16:54 ann.setDescription(rstring('desc-%i-%s' % (i, uuid)))
07:16:54 t_ann = omero.model.DatasetAnnotationLinkI()
07:16:54 t_ann.setParent(ds1)
07:16:54 t_ann.setChild(ann)
07:16:54 update.saveObject(t_ann)
07:16:54 p = omero.sys.Parameters()
07:16:54 p.map = {}
07:16:54 f = omero.sys.Filter()
07:16:54 f.ownerId = rlong(0)
07:16:54 f.limit = rint(10)
07:16:54 p.theFilter = f
07:16:54 M = timeline.getMostRecentAnnotationLinks
07:16:54 tagids = set([e.child.id.val for e in
07:16:54 M(None, ['TagAnnotation'], None, p)])
07:16:54 assert len(tagids) == 10
07:16:54 # And under #9609
07:16:54 tagids = set([e.child.id.val for e in
07:16:54 M(None, ['TagAnnotation'], None, p,
07:16:54 {"omero.group": "-1"})])
07:16:54 > assert len(tagids) == 10
07:16:54 E assert 6 == 10
07:16:54 E + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:16:54 test/integration/test_itimeline.py:244: AssertionError
07:16:54 ___________________________ TestPermissions.test3136 ___________________________
07:16:54 self = <test.integration.test_permissions.TestPermissions object at 0x7fb76b971610>
07:16:54 @pytest.mark.broken(ticket="11494")
07:16:54 def test3136(self):
07:16:54 """
07:16:54 Calls to updateGroup were taking too long
07:16:54 because the default value of permissions
07:16:54 returned by the server was triggering a
07:16:54 full changePermissions event.
07:16:54 """
07:16:54 admin = self.root.sf.getAdminService()
07:16:54 group = self.new_group(perms="rw----")
07:16:54 # Change the name but not the permissions
07:16:54 group.name = rstring(self.uuid())
07:16:54 elapsed1, rv = self.timeit(admin.updateGroup, group)
07:16:54 # Now change the name and the permissions
07:16:54 group.name = rstring(self.uuid())
07:16:54 group.details.permissions = omero.model.PermissionsI("rwr---")
07:16:54 elapsed2, rv = self.timeit(admin.updateGroup, group)
07:16:54 # Locally this test always fails as the two times are
07:16:54 # the same order of magnitude. This may be an indication that
07:16:54 # the relevant ticket:
07:16:54 # https://trac.openmicroscopy.org/ome/ticket/3136
07:16:54 # is still valid. Does the ticket need re-opening
07:16:54 # or does the test condition need relaxing?
07:16:54 > assert elapsed1 < (0.1 * elapsed2), \
07:16:54 "elapsed1=%s, elapsed2=%s" % (elapsed1, elapsed2)
07:16:54 E AssertionError: elapsed1=0.020673274993896484, elapsed2=0.014676332473754883
07:16:54 E assert 0.020673274993896484 < (0.1 * 0.014676332473754883)
07:16:54 test/integration/test_permissions.py:488: AssertionError
07:16:54 __________________ TestPermissions.testSaveWithNegOneExplicit __________________
07:16:54 self = <test.integration.test_permissions.TestPermissions object at 0x7fb76b975cd0>
07:16:54 @pytest.mark.broken(ticket="11374")
07:16:54 def testSaveWithNegOneExplicit(self):
07:16:54 # Get a user and services
07:16:54 client, user = self.new_client_and_user()
07:16:54 # Create a new object with an explicit group
07:16:54 admin = client.sf.getAdminService()
07:16:54 ec = admin.getEventContext()
07:16:54 grp = omero.model.ExperimenterGroupI(ec.groupId, False)
07:16:54 tag = omero.model.TagAnnotationI()
07:16:54 tag.details.group = grp
07:16:54 # Now try to save it in the -1 context
07:16:54 update = client.sf.getUpdateService()
07:16:54 all_context = {"omero.group": "-1"}
07:16:54 > update.saveAndReturnObject(tag, all_context)
07:16:54 test/integration/test_permissions.py:586:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 8d948a0b-e150-4430-94ff-95122cba6aca/41a82483-0282-47e9-9379-8e0db1c9895domero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 obj = object #0 (::omero::model::TagAnnotation)
07:16:54 {
07:16:54 _id = <nil>
07:16:54 _details = object #1 (::omero::model::Details)
07:16:54 {
07:16:54 ...nksSeq =
07:16:54 {
07:16:54 }
07:16:54 _annotationLinksLoaded = True
07:16:54 _annotationLinksCountPerOwner = {}
07:16:54 _textValue = <nil>
07:16:54 }
07:16:54 _ctx = {'omero.group': '-1'}
07:16:54 def saveAndReturnObject(self, obj, _ctx=None):
07:16:54 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:54 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:54 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:54 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:54 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:16:54 ____________________ TestPermissions.testSaveWithNegBadLink ____________________
07:16:54 self = <test.integration.test_permissions.TestPermissions object at 0x7fb76b971ac0>
07:16:54 @pytest.mark.broken(ticket="11374")
07:16:54 def testSaveWithNegBadLink(self): # ticket:8194
07:16:54 # Get a user and services
07:16:54 client, user = self.new_client_and_user()
07:16:54 admin = client.sf.getAdminService()
07:16:54 group1 = admin.getGroup(admin.getEventContext().groupId)
07:16:54 group2 = self.new_group(experimenters=[user])
07:16:54 for x in (group1, group2):
07:16:54 x.unload()
07:16:54 admin.getEventContext() # Refresh
07:16:54 # Create a new object with a bad link
07:16:54 image = self.new_image()
07:16:54 image.details.group = group1
07:16:54 tag = omero.model.TagAnnotationI()
07:16:54 tag.details.group = group2
07:16:54 link = image.linkAnnotation(tag)
07:16:54 link.details.group = group2
07:16:54 # Now try to save it in the -1 context
07:16:54 update = client.sf.getUpdateService()
07:16:54 all_context = {"omero.group": "-1"}
07:16:54 # Bad links should be detected and
07:16:54 # a security violation raised.
07:16:54 with pytest.raises(omero.GroupSecurityViolation):
07:16:54 > update.saveAndReturnObject(image, all_context)
07:16:54 test/integration/test_permissions.py:635:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = abfcf266-0a6b-4780-adab-3dc88b440156/f7f8e3e0-c96b-426e-a3c1-ad2e6bc5cb77omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 obj = object #0 (::omero::model::Image)
07:16:54 {
07:16:54 _id = <nil>
07:16:54 _details = object #1 (::omero::model::Details)
07:16:54 {
07:16:54 _...b1f44f-155f-4fd5-9f29-fc408a36b0ca
07:16:54 }
07:16:54 _description = object #14 (::omero::RString)
07:16:54 {
07:16:54 _val =
07:16:54 }
07:16:54 }
07:16:54 _ctx = {'omero.group': '-1'}
07:16:54 def saveAndReturnObject(self, obj, _ctx=None):
07:16:54 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:54 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:54 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:54 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:54 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:16:54 _______________________ TestPermissions.testSaveBadLink ________________________
07:16:54 self = <test.integration.test_permissions.TestPermissions object at 0x7fb76b9e7340>
07:16:54 @pytest.mark.broken(ticket="11375")
07:16:54 def testSaveBadLink(self):
07:16:54 # Get a user and services
07:16:54 client, user = self.new_client_and_user()
07:16:54 admin = client.sf.getAdminService()
07:16:54 group1 = admin.getGroup(admin.getEventContext().groupId)
07:16:54 group2 = self.new_group(experimenters=[user])
07:16:54 for x in (group1, group2):
07:16:54 x.unload()
07:16:54 admin.getEventContext() # Refresh
07:16:54 # Create a new object with a bad link
07:16:54 image = self.new_image()
07:16:54 image.details.group = group1
07:16:54 tag = omero.model.TagAnnotationI()
07:16:54 tag.details.group = group2
07:16:54 link = image.linkAnnotation(tag)
07:16:54 link.details.group = group2
07:16:54 # Now try to save it
07:16:54 update = client.sf.getUpdateService()
07:16:54 # Bad links should be detected and
07:16:54 # a security violation raised.
07:16:54 with pytest.raises(omero.GroupSecurityViolation):
07:16:54 > update.saveAndReturnObject(image)
07:16:54 test/integration/test_permissions.py:664:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 7fdb109b-7839-4270-97da-befc23912454/c87a27c1-aabb-4b9e-8fc9-dc533986fba5omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 obj = object #0 (::omero::model::Image)
07:16:54 {
07:16:54 _id = <nil>
07:16:54 _details = object #1 (::omero::model::Details)
07:16:54 {
07:16:54 _...a5d06c-f531-4da7-80eb-d118d307b266
07:16:54 }
07:16:54 _description = object #14 (::omero::RString)
07:16:54 {
07:16:54 _val =
07:16:54 }
07:16:54 }
07:16:54 _ctx = None
07:16:54 def saveAndReturnObject(self, obj, _ctx=None):
07:16:54 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:16:54 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:54 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:16:54 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:54 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:54 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:54 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:54 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:54 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:54 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:54 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:54 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 E at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:16:54 E at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:16:54 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:16:54 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:54 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 E message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: SecurityViolation
07:16:54 ______ TestPermissions.testUseOfRawFileBeanScriptReadCorrectGroupAndUser _______
07:16:54 self = <test.integration.test_permissions.TestPermissions object at 0x7fb76b97f6d0>
07:16:54 @pytest.mark.broken(ticket="11539")
07:16:54 def testUseOfRawFileBeanScriptReadCorrectGroupAndUser(self):
07:16:54 > self.assertValidScript(lambda v: {
07:16:54 'omero.group': str(v.details.group.id.val),
07:16:54 'omero.user': str(v.details.owner.id.val)
07:16:54 })
07:16:54 test/integration/test_permissions.py:831:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 test/integration/test_permissions.py:813: in assertValidScript
07:16:54 store.setFileId(script.id.val, ctx)
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 0cda2d49-50d4-4109-ad44-fca8e40de982/b45f0d5e-d3b3-4683-afcc-539c80ea28f6omero.api.RawFileStore -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 fileId = 1
07:16:54 _ctx = {'omero.client.uuid': '6751dab9-02e4-4909-bc2a-9b6b39fb2d5c', 'omero.group': '1', 'omero.session.uuid': '0cda2d49-50d4-4109-ad44-fca8e40de982', 'omero.user': '0'}
07:16:54 def setFileId(self, fileId, _ctx=None):
07:16:54 > return _M_omero.api.RawFileStore._op_setFileId.invoke(self, ((fileId, ), _ctx))
07:16:54 E Ice.UnknownException: exception ::Ice::UnknownException
07:16:54 E {
07:16:54 E unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:16:54 E at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:16:54 E at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:16:54 E at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:16:54 E at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 E at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 E at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:16:54 E at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:16:54 E at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:16:54 E at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:16:54 E at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:16:54 E at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_RawFileStore_ice.py:200: UnknownException
07:16:54 _________________________ TestRFS.testTicket1961Basic __________________________
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e040>
07:16:54 @pytest.mark.broken(ticket="11534")
07:16:54 def testTicket1961Basic(self):
07:16:54 ofile = self.file()
07:16:54 rfs = self.client.sf.createRawFileStore()
07:16:54 rfs.setFileId(ofile.id.val)
07:16:54 rfs.write([0, 1, 2, 3], 0, 4)
07:16:54 rfs.close()
07:16:54 > self.check_file(ofile)
07:16:54 test/integration/test_rawfilestore.py:49:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e040>
07:16:54 ofile = object #0 (::omero::model::OriginalFile)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 6207
07:16:54 }
07:16:54 _d...annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _name = object #26 (::omero::RString)
07:16:54 {
07:16:54 _val = test
07:16:54 }
07:16:54 }
07:16:54 client = <omero.clients.BaseClient object at 0x7fb75c637160>
07:16:54 def check_file(self, ofile, client=None):
07:16:54 if client is None:
07:16:54 client = self.client
07:16:54 query = client.sf.getQueryService()
07:16:54 ofile = query.get("OriginalFile", ofile.id.val)
07:16:54 assert ofile.size.val != -1
07:16:54 > assert ofile.hash.val != ""
07:16:54 E AssertionError: assert '' != ''
07:16:54 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517580\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 test/integration/test_rawfilestore.py:40: AssertionError
07:16:54 ____________________ TestRFS.testTicket1961WithKillSession _____________________
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e3d0>
07:16:54 @pytest.mark.broken(ticket="11534")
07:16:54 def testTicket1961WithKillSession(self):
07:16:54 ofile = self.file()
07:16:54 grp = self.ctx.groupName
07:16:54 session = self.client.sf.getSessionService().createUserSession(
07:16:54 1 * 1000, 10000, grp)
07:16:54 properties = self.client.getPropertyMap()
07:16:54 c = omero.client(properties)
07:16:54 s = c.joinSession(session.uuid.val)
07:16:54 rfs = s.createRawFileStore()
07:16:54 rfs.setFileId(ofile.id.val)
07:16:54 rfs.write([0, 1, 2, 3], 0, 4)
07:16:54 c.killSession()
07:16:54 > self.check_file(ofile)
07:16:54 test/integration/test_rawfilestore.py:67:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e3d0>
07:16:54 ofile = object #0 (::omero::model::OriginalFile)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 6208
07:16:54 }
07:16:54 _d...annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _name = object #26 (::omero::RString)
07:16:54 {
07:16:54 _val = test
07:16:54 }
07:16:54 }
07:16:54 client = <omero.clients.BaseClient object at 0x7fb75c637160>
07:16:54 def check_file(self, ofile, client=None):
07:16:54 if client is None:
07:16:54 client = self.client
07:16:54 query = client.sf.getQueryService()
07:16:54 ofile = query.get("OriginalFile", ofile.id.val)
07:16:54 assert ofile.size.val != -1
07:16:54 > assert ofile.hash.val != ""
07:16:54 E AssertionError: assert '' != ''
07:16:54 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517694\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 test/integration/test_rawfilestore.py:40: AssertionError
07:16:54 __________________________ TestRFS.testTicket2161Save __________________________
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e790>
07:16:54 @pytest.mark.broken(ticket="11534")
07:16:54 def testTicket2161Save(self):
07:16:54 ofile = self.file()
07:16:54 rfs = self.client.sf.createRawFileStore()
07:16:54 rfs.setFileId(ofile.id.val)
07:16:54 rfs.write([0, 1, 2, 3], 0, 4)
07:16:54 ofile = rfs.save()
07:16:54 > self.check_file(ofile)
07:16:54 test/integration/test_rawfilestore.py:76:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93e790>
07:16:54 ofile = object #0 (::omero::model::OriginalFile)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 6209
07:16:54 }
07:16:54 _d...annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _name = object #26 (::omero::RString)
07:16:54 {
07:16:54 _val = test
07:16:54 }
07:16:54 }
07:16:54 client = <omero.clients.BaseClient object at 0x7fb75c637160>
07:16:54 def check_file(self, ofile, client=None):
07:16:54 if client is None:
07:16:54 client = self.client
07:16:54 query = client.sf.getQueryService()
07:16:54 ofile = query.get("OriginalFile", ofile.id.val)
07:16:54 assert ofile.size.val != -1
07:16:54 > assert ofile.hash.val != ""
07:16:54 E AssertionError: assert '' != ''
07:16:54 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517732\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 test/integration/test_rawfilestore.py:40: AssertionError
07:16:54 _____________________________ TestRFS.testNoWrite ______________________________
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93eb50>
07:16:54 @pytest.mark.broken(ticket="11534")
07:16:54 def testNoWrite(self):
07:16:54 group = self.new_group(perms="rwr---")
07:16:54 client1 = self.new_client(group=group)
07:16:54 client2 = self.new_client(group=group)
07:16:54 ofile = self.file(client=client1)
07:16:54 rfs = client1.sf.createRawFileStore()
07:16:54 rfs.setFileId(ofile.id.val)
07:16:54 rfs.write(b"0123", 0, 4)
07:16:54 rfs.close()
07:16:54 > self.check_file(ofile, client=client1)
07:16:54 test/integration/test_rawfilestore.py:94:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fb76b93eb50>
07:16:54 ofile = object #0 (::omero::model::OriginalFile)
07:16:54 {
07:16:54 _id = object #1 (::omero::RLong)
07:16:54 {
07:16:54 _val = 6210
07:16:54 }
07:16:54 _d...annotationLinksCountPerOwner =
07:16:54 {
07:16:54 }
07:16:54 _name = object #26 (::omero::RString)
07:16:54 {
07:16:54 _val = test
07:16:54 }
07:16:54 }
07:16:54 client = <omero.clients.BaseClient object at 0x7fb7615d9d30>
07:16:54 def check_file(self, ofile, client=None):
07:16:54 if client is None:
07:16:54 client = self.client
07:16:54 query = client.sf.getQueryService()
07:16:54 ofile = query.get("OriginalFile", ofile.id.val)
07:16:54 assert ofile.size.val != -1
07:16:54 > assert ofile.hash.val != ""
07:16:54 E AssertionError: assert '' != ''
07:16:54 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840522991\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 test/integration/test_rawfilestore.py:40: AssertionError
07:16:54 __________________ TestRepoRawFileStore.testFailedWriteNoFile __________________
07:16:54 self = <test.integration.test_reporawfilestore.TestRepoRawFileStore object at 0x7fb76b968040>
07:16:54 @pytest.mark.broken(ticket="11610")
07:16:54 def testFailedWriteNoFile(self):
07:16:54 # Without a single write, no file is produced
07:16:54 rfs = self.repoPrx.file(self.repo_filename, "rw") # create empty file
07:16:54 rfs.close()
07:16:54 rfs = self.repoPrx.file(self.repo_filename, "r")
07:16:54 with pytest.raises(omero.ResourceError):
07:16:54 > rfs.size()
07:16:54 E Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:16:54 test/integration/test_reporawfilestore.py:68: Failed
07:16:54 ______________________ TestScripts.testAutoFillTicket2326 ______________________
07:16:54 self = <test.integration.test_scripts.TestScripts object at 0x7fb76b8d2700>
07:16:54 @pytest.mark.broken(ticket="11539")
07:16:54 def testAutoFillTicket2326(self):
07:16:54 SCRIPT = """if True:
07:16:54 import omero.scripts
07:16:54 import omero.rtypes
07:16:54 client = omero.scripts.client(
07:16:54 "ticket2326", omero.scripts.Long("width", optional=True))
07:16:54 width = client.getInput("width")
07:16:54 print(width)
07:16:54 client.setOutput(
07:16:54 "noWidthKey",
07:16:54 omero.rtypes.rbool("width" not in client.getInputKeys()))
07:16:54 client.setOutput("widthIsNull", omero.rtypes.rbool(width is None))
07:16:54 """
07:16:54 impl = omero.processor.usermode_processor(self.client)
07:16:54 svc = self.client.sf.getScriptService()
07:16:54 try:
07:16:54 scriptID = svc.uploadScript("/test/testAutoFillTicket2326", SCRIPT)
07:16:54 > process = svc.runScript(scriptID, {}, None)
07:16:54 test/integration/test_scripts.py:378:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 2e1357fe-e5ba-4814-bdeb-5afab6809071/e818940b-6485-4c5b-8a7e-0938e57c5bcdomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 scriptID = 6215, inputs = {}, waitSecs = None, _ctx = None
07:16:54 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:54 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:54 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 E {
07:16:54 E serverStackTrace =
07:16:54 E serverExceptionClass =
07:16:54 E message = No processor available! [0 response(s)]
07:16:54 E processorCount = 0
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.util.Resources:__init__.py:652 Starting
07:16:54 INFO omero.processor.ProcessorI:processor.py:814 Registering processor ";<U\"?]\/`-Pi_#6:f<TAA/UsermodeProcessor-495a56fa-b941-4c40-8cb6-91bb6c2c2a18" -t -e 1.1:tcp -h 127.0.0.1 -p 45445 -t 60000
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:54 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:54 ______________ TestScripts.testParamLoadingPerformanceTicket2285 _______________
07:16:54 self = <test.integration.test_scripts.TestScripts object at 0x7fb76b8d2ac0>
07:16:54 @pytest.mark.broken(reason="Minor performance failure", ticket="11539")
07:16:54 def testParamLoadingPerformanceTicket2285(self):
07:16:54 root_client = self.new_client(system=True)
07:16:54 svc = root_client.sf.getScriptService()
07:16:54 SCRIPT = """if True:
07:16:54 import omero.model as OM
07:16:54 import omero.rtypes as OR
07:16:54 import omero.scripts as OS
07:16:54 c = OS.client("perf test",
07:16:54 OS.Long("a", min=0, max=5),
07:16:54 OS.String("b", values=("a","b","c")),
07:16:54 OS.List("c").ofType(OM.ImageI))
07:16:54 """
07:16:54 upload_time, scriptID = self.timeit(
07:16:54 svc.uploadOfficialScript, "/test/perf%s.py" % self.uuid(), SCRIPT)
07:16:54 impl = omero.processor.usermode_processor(root_client)
07:16:54 try:
07:16:54 params_time, params = self.timeit(svc.getParams, scriptID)
07:16:54 assert params_time < (upload_time / 10), \
07:16:54 "upload_time(%s) <= 10 * params_time(%s)!" % \
07:16:54 (upload_time, params_time)
07:16:54 assert params_time < 0.1, "params_time(%s) >= 0.01 !" % params_time
07:16:54 > run_time, process = self.timeit(
07:16:54 svc.runScript, scriptID, wrap({"a": int(5)}).val, None)
07:16:54 test/integration/test_scripts.py:417:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:612: in timeit
07:16:54 rv = func(*args, **kwargs)
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 5e0665b3-1110-412e-b58d-a7d37481ceb0/514ea6bc-f40c-49b9-895a-c37d08d062c9omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 scriptID = 6216, inputs = {'a': object #0 (::omero::RInt)
07:16:54 {
07:16:54 _val = 5
07:16:54 }}
07:16:54 waitSecs = None, _ctx = None
07:16:54 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:54 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:54 E omero.ValidationException: exception ::omero::ValidationException
07:16:54 E {
07:16:54 E serverStackTrace =
07:16:54 E serverExceptionClass =
07:16:54 E message = Invalid parameters:
07:16:54 E WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
07:16:54 E
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: ValidationException
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4956
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:16:54 handle.close()
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:16:54 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:16:54 omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:16:54 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:16:54 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:54 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor524.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:54 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor554.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:16:54 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:16:54 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:16:54 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 message = User 4740 is not a member of group 3684 and cannot login
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:16:54 INFO omero.util.Resources:__init__.py:652 Starting
07:16:54 INFO omero.processor.ProcessorI:processor.py:814 Registering processor "QQ:Jm1{{?G\/?w>`Mf,JH/UsermodeProcessor-e8dca295-02b9-45e9-837d-474ee76e23bf" -t -e 1.1:tcp -h 127.0.0.1 -p 45445 -t 60000
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:16:54 handle.close()
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:16:54 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:16:54 omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:16:54 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:16:54 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:54 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor524.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:16:54 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor554.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:16:54 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:16:54 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:16:54 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 message = User 4740 is not a member of group 3684 and cannot login
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.processJob
07:16:54 INFO omero.processor.ProcessorI:processor.py:940 processJob: Session = 1798c98c-b63b-4989-ad3d-1d13f5834913, JobId = 4957
07:16:54 INFO omero.remote:decorators.py:78 Excp: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = None
07:16:54 serverExceptionClass = None
07:16:54 message = Inval
07:16:54 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:54 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:54 _____________________________ TestScripts.test3527 _____________________________
07:16:54 self = <test.integration.test_scripts.TestScripts object at 0x7fb76b8d2c10>
07:16:54 @pytest.mark.broken(ticket="11610")
07:16:54 def test3527(self):
07:16:54 SCRIPT = """if True:
07:16:54 import omero.scripts
07:16:54 import omero.rtypes
07:16:54 client = omero.scripts.client("ticket3527", \
07:16:54 omero.scripts.Long("gid", out=True))
07:16:54 ec = client.sf.getAdminService().getEventContext()
07:16:54 gid = ec.groupId
07:16:54 client.setOutput("gid", omero.rtypes.rlong(gid))
07:16:54 """
07:16:54 impl = omero.processor.usermode_processor(self.client)
07:16:54 svc = self.client.sf.getScriptService()
07:16:54 try:
07:16:54 scriptID = svc.uploadScript("/test/test3527", SCRIPT)
07:16:54 > process = svc.runScript(scriptID, {}, None)
07:16:54 test/integration/test_scripts.py:521:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = 2e1357fe-e5ba-4814-bdeb-5afab6809071/e818940b-6485-4c5b-8a7e-0938e57c5bcdomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 scriptID = 6218, inputs = {}, waitSecs = None, _ctx = None
07:16:54 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:16:54 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:16:54 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 E {
07:16:54 E serverStackTrace =
07:16:54 E serverExceptionClass =
07:16:54 E message = No processor available! [0 response(s)]
07:16:54 E processorCount = 0
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:16:54 ------------------------------ Captured log call -------------------------------
07:16:54 INFO omero.util.Resources:__init__.py:652 Starting
07:16:54 INFO omero.processor.ProcessorI:processor.py:814 Registering processor ";<U\"?]\/`-Pi_#6:f<TAA/UsermodeProcessor-69b858f9-3a00-4f06-9546-9196587df813" -t -e 1.1:tcp -h 127.0.0.1 -p 45445 -t 60000
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:16:54 Traceback (most recent call last):
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:16:54 file, handle = self.lookup(scriptContext)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:16:54 file = prx.validateScript(job, self.accepts_list)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:16:54 return func(*args, **kwargs)
07:16:54 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:16:54 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:16:54 omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:16:54 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:16:54 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:16:54 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor587.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:16:54 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:16:54 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:16:54 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = Found wrong number of files: []
07:16:54 }
07:16:54 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:16:54 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:16:54 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:16:54 _______________ TestThumbnailPerms.testPrivate10618RootWithNoCtx _______________
07:16:54 self = <test.integration.test_thumbnailPerms.TestThumbnailPerms object at 0x7fb76b885fa0>
07:16:54 @pytest.mark.broken(reason="requires thumbnail work")
07:16:54 def testPrivate10618RootWithNoCtx(self):
07:16:54 """
07:16:54 This would require the server to try omero.group=-1
07:16:54 for the user.
07:16:54 """
07:16:54 group = self.new_group(perms="rw----")
07:16:54 > self.assert10618(group, self.root, True)
07:16:54 test/integration/test_thumbnailPerms.py:256:
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 test/integration/test_thumbnailPerms.py:217: in assert10618
07:16:54 s = tb_prx.getThumbnailByLongestSideSet(rint(16), [pId], *ctx)
07:16:54 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:16:54 self = c5c6d868-61c2-4a64-a4c5-511a7b30aaa4/b14d94ff-e148-4da1-a68d-3f50e67cebaeomero.api.ThumbnailStore -t -e 1.1:tcp -h 172.18.0.10 -p 41087 -t 60000
07:16:54 size = object #0 (::omero::RInt)
07:16:54 {
07:16:54 _val = 16
07:16:54 }, pixelsIds = [2901]
07:16:54 _ctx = None
07:16:54 def getThumbnailByLongestSideSet(self, size, pixelsIds, _ctx=None):
07:16:54 > return _M_omero.api.ThumbnailStore._op_getThumbnailByLongestSideSet.invoke(self, ((size, pixelsIds), _ctx))
07:16:54 E omero.ResourceError: exception ::omero::ResourceError
07:16:54 E {
07:16:54 E serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:54 E at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:16:54 E at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:16:54 E at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3877.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:54 E at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3877.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3882.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 E at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 E at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:16:54 E at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
07:16:54 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 E at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:16:54 E at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:16:54 E at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:16:54 E at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:16:54 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 E at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 E
07:16:54 E serverExceptionClass = ome.conditions.ResourceError
07:16:54 E message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:54 E }
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_ThumbnailStore_ice.py:730: ResourceError
07:16:54 ___________________________ TestTickets2000.test1184 ___________________________
07:16:54 self = <test.integration.test_tickets2000.TestTickets2000 object at 0x7fb76b85ac70>
07:16:54 @pytest.mark.broken(ticket="11543")
07:16:54 def test1184(self):
07:16:54 uuid = self.uuid()
07:16:54 client = self.new_client(perms="rw----")
07:16:54 query = client.sf.getQueryService()
07:16:54 update = client.sf.getUpdateService()
07:16:54 admin = client.sf.getAdminService()
07:16:54 cont = client.sf.getContainerService()
07:16:54 ds = self.new_dataset(name='test1184-ds-%s' % (uuid))
07:16:54 for i in range(1, 2001):
07:16:54 img = self.new_image(name='img1184-%s' % (uuid))
07:16:54 ds.linkImage(img)
07:16:54 ds = update.saveAndReturnObject(ds)
07:16:54 c = cont.getCollectionCount(
07:16:54 ds.__class__.__name__, ("imageLinks"), [ds.id.val], None)
07:16:54 assert c[ds.id.val] == 2000
07:16:54 page = 1
07:16:54 p = omero.sys.Parameters()
07:16:54 p.map = {}
07:16:54 p.map["eid"] = rlong(admin.getEventContext().userId)
07:16:54 p.map["oid"] = rlong(ds.id.val)
07:16:54 if page is not None:
07:16:54 f = omero.sys.Filter()
07:16:54 f.limit = rint(24)
07:16:54 f.offset = rint((int(page) - 1) * 24)
07:16:54 p.theFilter = f
07:16:54 sql = "select im from Image im join fetch im.details.owner " \
07:16:54 "join fetch im.details.group left outer join fetch " \
07:16:54 "im.datasetLinks dil left outer join fetch dil.parent d " \
07:16:54 "where d.id = :oid and im.details.owner.id=:eid " \
07:16:54 "order by im.id asc"
07:16:54 start = time.time()
07:16:54 res = query.findAllByQuery(sql, p)
07:16:54 assert 24 == len(res)
07:16:54 end = time.time()
07:16:54 elapsed = end - start
07:16:54 > assert elapsed < 3.0, \
07:16:54 "Expected the test to complete in < 3 seconds, took: %f" % elapsed
07:16:54 E AssertionError: Expected the test to complete in < 3 seconds, took: 10.850440
07:16:54 E assert 10.85043978691101 < 3.0
07:16:54 test/integration/test_tickets2000.py:370: AssertionError
07:16:54 =============================== warnings summary ===============================
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:16:54 import sys, string, imp, os, threading, warnings, datetime
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:16:54 warnings.warn(
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:16:54 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:16:54 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:16:54 from pkg_resources import DistributionNotFound, get_distribution
07:16:54 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d]
07:16:54 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r]
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
07:16:54 warnings.warn(
07:16:54 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:16:54 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:16:54 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:54 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:54 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:16:54 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:16:54 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx
07:16:54 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:16:54 converted_plane = byte_swapped_plane.tostring()
07:16:54 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:16:54 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken/junit-results.xml -
07:16:54 =========================== short test summary info ============================
07:16:54 FAILED test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly - AssertionError: assert False
07:16:54 + where False = <built-in method endswith of str object at 0x7fb75f1c6260>('SecurityViolation: Admins only!\n')
07:16:54 + where <built-in method endswith of str object at 0x7fb75f1c6260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:16:54 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] - omero.cli.NonZeroReturnCode: assert failed
07:16:54 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] - omero.cli.NonZeroReturnCode: assert failed
07:16:54 FAILED test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory - AssertionError: Logs count should match number of objects
07:16:54 assert 1 == 0
07:16:54 FAILED test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 {
07:16:54 serverStackTrace =
07:16:54 serverExceptionClass =
07:16:54 message = No processor available! [0 response(s)]
07:16:54 processorCount = 0
07:16:54 }
07:16:54 FAILED test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations - AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:16:54 assert 0.30582666397094727 < 0.16650700569152832
07:16:54 FAILED test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead - assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:16:54 + where 2719 = getId()
07:16:54 + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:16:54 + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 48685263-37ae-40c1-b954-1c8905207f23\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:16:54 + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 48685263-37ae-40c1-b954-1c8905207f23\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:16:54 + where getEventContext = <omero.gateway._BlitzGateway object at 0x7fb7926b39a0>.getEventContext
07:16:54 + where <omero.gateway._BlitzGateway object at 0x7fb7926b39a0> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fb75f0d1d60>.gateway
07:16:54 FAILED test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback - assert 0 > 0
07:16:54 + where 0 = len([])
07:16:54 + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:16:54 FAILED test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts - assert 6201 in []
07:16:54 FAILED test/integration/tablestest/test_service.py::TestTables::test2098 - AttributeError: type object 'path' has no attribute 'path'
07:16:54 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile - AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:16:54 FAILED test/integration/tablestest/test_service.py::TestTables::testReadEqual - assert [1] == [1, 2, 3, 4, 5]
07:16:54 Right contains 4 more items, first extra item: 2
07:16:54 Full diff:
07:16:54 [
07:16:54 1,
07:16:54 - 2,
07:16:54 - 3,
07:16:54 - 4,
07:16:54 - 5,
07:16:54 ]
07:16:54 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange - assert [4] == [-1, 0, 1, 2, 3, 4]
07:16:54 At index 0 diff: 4 != -1
07:16:54 Right contains 5 more items, first extra item: 0
07:16:54 Full diff:
07:16:54 [
07:16:54 - -1,
07:16:54 - 0,
07:16:54 - 1,
07:16:54 - 2,
07:16:54 - 3,
07:16:54 4,
07:16:54 ]
07:16:54 FAILED test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset - omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:16:54 at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:16:54 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.changePasswordWithOldPassword_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:16:54 at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 message = Old password is invalid
07:16:54 }
07:16:54 FAILED test/integration/test_admin.py::TestAdmin::test9193 - omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:54 at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor624.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor624.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3266.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3265.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy99.removeGroups_async(Unknown Source)
07:16:54 at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:16:54 at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:16:54 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ValidationException
07:16:54 message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:16:54 }
07:16:54 FAILED test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 - omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124674 to ome.model.meta.Event:Id_124673
07:16:54 You may need to reload the object before continuing.
07:16:54 at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:16:54 at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:16:54 at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:16:54 at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:16:54 at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:16:54 at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:16:54 at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:16:54 at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:16:54 at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:16:54 at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:16:54 at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:16:54 at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:16:54 at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.OptimisticLockException
07:16:54 message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124674 to ome.model.meta.Event:Id_124673
07:16:54 You may need to reload the object before continuing.
07:16:54 backOff = 0
07:16:54 }
07:16:54 FAILED test/integration/test_ishare.py::TestIShare::test1172 - assert 0 == 1
07:16:54 + where 0 = len([])
07:16:54 FAILED test/integration/test_itimeline.py::TestITimeline::test1225 - assert 6 == 10
07:16:54 + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:16:54 FAILED test/integration/test_permissions.py::TestPermissions::test3136 - AssertionError: elapsed1=0.020673274993896484, elapsed2=0.014676332473754883
07:16:54 assert 0.020673274993896484 < (0.1 * 0.014676332473754883)
07:16:54 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit - omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:54 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:54 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:54 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 }
07:16:54 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink - omero.ApiUsageException: exception ::omero::ApiUsageException
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:16:54 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:16:54 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:16:54 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ApiUsageException
07:16:54 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:16:54 }
07:16:54 FAILED test/integration/test_permissions.py::TestPermissions::testSaveBadLink - omero.SecurityViolation: exception ::omero::SecurityViolation
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:54 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:16:54 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:54 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:54 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:54 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:54 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:16:54 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:16:54 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:16:54 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:16:54 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:16:54 at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:16:54 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:16:54 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:16:54 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:16:54 at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:16:54 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:16:54 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:16:54 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:16:54 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:16:54 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:16:54 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:16:54 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:16:54 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:16:54 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:16:54 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor603.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor680.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor679.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:16:54 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:16:54 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:16:54 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.SecurityViolation
07:16:54 message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:16:54 }
07:16:54 FAILED test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser - Ice.UnknownException: exception ::Ice::UnknownException
07:16:54 {
07:16:54 unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:16:54 at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:16:54 at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:16:54 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:16:54 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:16:54 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:16:54 at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:16:54 at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:16:54 at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:16:54 at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:16:54 at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:16:54 at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 }
07:16:54 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic - AssertionError: assert '' != ''
07:16:54 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517580\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession - AssertionError: assert '' != ''
07:16:54 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517694\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save - AssertionError: assert '' != ''
07:16:54 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840517732\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 FAILED test/integration/test_rawfilestore.py::TestRFS::testNoWrite - AssertionError: assert '' != ''
07:16:54 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:16:54 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729840522991\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:16:54 FAILED test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile - Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:16:54 FAILED test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 {
07:16:54 serverStackTrace =
07:16:54 serverExceptionClass =
07:16:54 message = No processor available! [0 response(s)]
07:16:54 processorCount = 0
07:16:54 }
07:16:54 FAILED test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 - omero.ValidationException: exception ::omero::ValidationException
07:16:54 {
07:16:54 serverStackTrace =
07:16:54 serverExceptionClass =
07:16:54 message = Invalid parameters:
07:16:54 WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
07:16:54 }
07:16:54 FAILED test/integration/test_scripts.py::TestScripts::test3527 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:16:54 {
07:16:54 serverStackTrace =
07:16:54 serverExceptionClass =
07:16:54 message = No processor available! [0 response(s)]
07:16:54 processorCount = 0
07:16:54 }
07:16:54 FAILED test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx - omero.ResourceError: exception ::omero::ResourceError
07:16:54 {
07:16:54 serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:54 at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:16:54 at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:16:54 at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3877.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:16:54 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:16:54 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:16:54 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3877.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3882.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:16:54 at ome.services.throttling.Callback.run(Callback.java:56)
07:16:54 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:16:54 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:16:54 at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:16:54 at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
07:16:54 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:16:54 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:16:54 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:16:54 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:16:54 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:16:54 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:16:54 at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:16:54 at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:16:54 at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:16:54 at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:16:54 at IceInternal.Incoming.invoke(Incoming.java:221)
07:16:54 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:16:54 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:16:54 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:16:54 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:16:54 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:16:54 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:16:54 at java.base/java.lang.Thread.run(Thread.java:829)
07:16:54 serverExceptionClass = ome.conditions.ResourceError
07:16:54 message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:16:54 }
07:16:54 FAILED test/integration/test_tickets2000.py::TestTickets2000::test1184 - AssertionError: Expected the test to complete in < 3 seconds, took: 10.850440
07:16:54 assert 10.85043978691101 < 3.0
07:16:54 ==== 33 failed, 3 passed, 2025 deselected, 12 warnings in 219.95s (0:03:39) ====
07:16:55 !! 10/25/24 08:16:55.082 error: 4 communicators not destroyed during global destruction.
07:16:55 Result: 1
07:16:55
07:16:55 BUILD SUCCESSFUL
07:16:55 Total time: 3 minutes 42 seconds
07:16:55 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/broken broken
07:16:55 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:16:55 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
07:16:55 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
07:16:56
07:16:56 testng-init:
07:16:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:16:56 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:17:25 07:17:25,469 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:17:25 07:17:25,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - No custom configurators were discovered as a service.
07:17:25 07:17:25,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:17:25 07:17:25,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:17:25 07:17:25,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:17:25 07:17:25,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:17:25 07:17:25,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:17:25 07:17:25,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:17:25 07:17:25,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:17:25 07:17:25,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:17:25 07:17:25,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:17:25 07:17:25,480 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs multiple times on the classpath.
07:17:25 07:17:25,480 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:17:25 07:17:25,480 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:17:25 07:17:25,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:17:25 07:17:25,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:17:25 07:17:25,829 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:17:25 07:17:25,831 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:17:25 07:17:25,831 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Please move "immediateFlush" property into the enclosing appender.
07:17:25 07:17:25,892 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Setting the "immediateFlush" property of the enclosing appender to true
07:17:25 07:17:25,892 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:17:25 07:17:25,892 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:17:25 07:17:25,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:17:25 07:17:25,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:17:25 07:17:25,893 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:17:25 07:17:25,893 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:17:25 07:17:25,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1e6060f1 - End of configuration.
07:17:25 07:17:25,896 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7e49ded - Registering current configuration as safe fallback point
07:17:25 07:17:25,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 418 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:17:25
07:17:25 lifecycle.test-compile:
07:17:25 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_156000333.tmp
07:17:26 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:17:26 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:17:26 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-edc8e2180c-ice36-ice36 :: integration :: Fri Oct 25 07:16:55 UTC 2024
07:17:26 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:17:26 :: publishing :: omero#OmeroJava-test
07:17:26 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.jar
07:17:26 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-edc8e2180c-ice36-ice36.xml
07:17:26
07:17:26 broken:
07:17:26 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:17:27 07:17:27,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:17:27 07:17:27,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
07:17:27 07:17:27,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:17:27 07:17:27,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:17:27 07:17:27,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:17:27 07:17:27,150 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:17:27 07:17:27,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:17:27 07:17:27,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:17:27 07:17:27,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:17:27 07:17:27,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:17:27 07:17:27,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:17:27 07:17:27,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
07:17:27 07:17:27,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:17:27 07:17:27,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:17:27 07:17:27,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:17:27 07:17:27,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:17:27 07:17:27,773 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:17:27 07:17:27,775 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:17:27 07:17:27,775 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
07:17:27 07:17:27,798 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:17:27 07:17:27,799 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:17:27 07:17:27,800 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
07:17:27 07:17:27,800 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
07:17:27 07:17:27,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 649 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:17:36 Oct 25, 2024 7:17:36 AM ome.system.OmeroContext prepareRefresh
07:17:36 INFO: Refreshing ome.system.OmeroContext@9fec931: startup date [Fri Oct 25 07:17:36 UTC 2024]; root of context hierarchy
07:17:36 Oct 25, 2024 7:17:36 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
07:17:36 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
07:19:20 ===============================================
07:19:20 OmeroJava.integration
07:19:20 Total tests run: 43, Passes: 2, Failures: 41, Skips: 0
07:19:20 ===============================================
07:19:21 The tests failed.
07:19:21
07:19:21 BUILD SUCCESSFUL
07:19:21 Total time: 2 minutes 25 seconds
07:19:21 + deactivate
07:19:21 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:19:21 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:19:21 + export PATH
07:19:21 + unset _OLD_VIRTUAL_PATH
07:19:21 + '[' -n '' ']'
07:19:21 + '[' -n /bin/bash -o -n '' ']'
07:19:21 + hash -r
07:19:21 + '[' -n '' ']'
07:19:21 + unset VIRTUAL_ENV
07:19:21 + '[' '!' '' = nondestructive ']'
07:19:21 + unset -f deactivate
07:19:21 Recording test results
07:19:22 [Checks API] No suitable checks publisher found.
07:19:22 Build step 'Publish JUnit test result report' changed build result to UNSTABLE
07:19:22 TestNG Reports Processing: START
07:19:22 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
07:19:23 Saving reports...
07:19:23 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/207/testng/testng-results-1.xml'
07:19:23 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/207/testng/testng-results.xml'
07:19:23 0.077250% of tests failed, which exceeded threshold of 0%. Marking build as UNSTABLE
07:19:23 TestNG Reports Processing: FINISH
07:19:23 Finished: UNSTABLE
![[Jenkins]](/jenkins/static/9e710227/images/svgs/logo.svg){kind=logo}
