01:03:55 Started by upstream project "Trigger" build number 260
01:03:55 originally caused by:
01:03:55 Started by timer
01:03:55 Running as SYSTEM
01:03:55 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
01:03:55 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins6103563909090420623.sh
01:03:55 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
01:03:56 + python3 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
01:03:59 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:03:59 ++ deactivate nondestructive
01:03:59 ++ '[' -n '' ']'
01:03:59 ++ '[' -n '' ']'
01:03:59 ++ '[' -n /bin/bash -o -n '' ']'
01:03:59 ++ hash -r
01:03:59 ++ '[' -n '' ']'
01:03:59 ++ unset VIRTUAL_ENV
01:03:59 ++ '[' '!' nondestructive = nondestructive ']'
01:03:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:03:59 ++ export VIRTUAL_ENV
01:03:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:59 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:59 ++ export PATH
01:03:59 ++ '[' -n '' ']'
01:03:59 ++ '[' -z '' ']'
01:03:59 ++ _OLD_VIRTUAL_PS1=
01:03:59 ++ PS1='(.venv3) '
01:03:59 ++ export PS1
01:03:59 ++ '[' -n /bin/bash -o -n '' ']'
01:03:59 ++ hash -r
01:03:59 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:03:59 Collecting zeroc-ice==3.6.5
01:04:00 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:04:02 Installing collected packages: zeroc-ice
01:04:03 Successfully installed zeroc-ice-3.6.5
01:04:03 + pip install -U pip future setuptools
01:04:03 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:04:03 Collecting pip
01:04:03 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
01:04:04 Collecting future
01:04:04 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:04:04 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
01:04:04 Collecting setuptools
01:04:04 Using cached setuptools-75.2.0-py3-none-any.whl (1.2 MB)
01:04:04 Installing collected packages: setuptools, pip, future
01:04:04 Attempting uninstall: setuptools
01:04:04 Found existing installation: setuptools 53.0.0
01:04:04 Uninstalling setuptools-53.0.0:
01:04:04 Successfully uninstalled setuptools-53.0.0
01:04:05 Attempting uninstall: pip
01:04:05 Found existing installation: pip 21.2.3
01:04:06 Uninstalling pip-21.2.3:
01:04:06 Successfully uninstalled pip-21.2.3
01:04:07 Successfully installed future-1.0.0 pip-24.2 setuptools-75.2.0
01:04:07 + pip install markdown
01:04:08 Collecting markdown
01:04:08 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:04:08 Collecting importlib-metadata>=4.4 (from markdown)
01:04:08 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:04:08 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:04:08 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
01:04:08 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:04:08 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:04:08 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
01:04:08 Installing collected packages: zipp, importlib-metadata, markdown
01:04:08 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
01:04:08 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
01:04:11 Collecting mox3
01:04:11 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
01:04:11 Collecting pytest
01:04:11 Using cached pytest-8.3.3-py3-none-any.whl.metadata (7.5 kB)
01:04:11 Collecting pytest-django
01:04:11 Using cached pytest_django-4.9.0-py3-none-any.whl.metadata (8.2 kB)
01:04:11 Collecting pytest-xdist
01:04:11 Using cached pytest_xdist-3.6.1-py3-none-any.whl.metadata (4.3 kB)
01:04:11 Collecting pytest-mock
01:04:11 Using cached pytest_mock-3.14.0-py3-none-any.whl.metadata (3.8 kB)
01:04:11 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
01:04:11 Using cached pbr-6.1.0-py2.py3-none-any.whl.metadata (3.4 kB)
01:04:12 Collecting fixtures>=3.0.0 (from mox3)
01:04:12 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
01:04:12 Collecting iniconfig (from pytest)
01:04:12 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
01:04:12 Collecting packaging (from pytest)
01:04:12 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
01:04:12 Collecting pluggy<2,>=1.5 (from pytest)
01:04:12 Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
01:04:12 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
01:04:12 Using cached exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)
01:04:12 Collecting tomli>=1 (from pytest)
01:04:12 Using cached tomli-2.0.2-py3-none-any.whl.metadata (10.0 kB)
01:04:12 Collecting execnet>=2.1 (from pytest-xdist)
01:04:12 Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
01:04:12 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
01:04:12 Using cached pytest-8.3.3-py3-none-any.whl (342 kB)
01:04:12 Using cached pytest_django-4.9.0-py3-none-any.whl (23 kB)
01:04:12 Using cached pytest_xdist-3.6.1-py3-none-any.whl (46 kB)
01:04:12 Using cached pytest_mock-3.14.0-py3-none-any.whl (9.9 kB)
01:04:12 Using cached exceptiongroup-1.2.2-py3-none-any.whl (16 kB)
01:04:12 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
01:04:12 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
01:04:12 Using cached pbr-6.1.0-py2.py3-none-any.whl (108 kB)
01:04:12 Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
01:04:12 Using cached tomli-2.0.2-py3-none-any.whl (13 kB)
01:04:12 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
01:04:12 Using cached packaging-24.1-py3-none-any.whl (53 kB)
01:04:13 Installing collected packages: tomli, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-xdist, pytest-mock, pytest-django, mox3
01:04:13 Successfully installed exceptiongroup-1.2.2 execnet-2.1.1 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.1 pbr-6.1.0 pluggy-1.5.0 pytest-8.3.3 pytest-django-4.9.0 pytest-mock-3.14.0 pytest-xdist-3.6.1 tomli-2.0.2
01:04:13 + pip install tables
01:04:14 Collecting tables
01:04:14 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:04:14 Collecting numpy>=1.19.0 (from tables)
01:04:14 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:04:14 Collecting numexpr>=2.6.2 (from tables)
01:04:14 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
01:04:14 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.1)
01:04:15 Collecting py-cpuinfo (from tables)
01:04:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:04:15 Collecting blosc2>=2.3.0 (from tables)
01:04:15 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:04:15 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:04:15 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:04:15 Collecting msgpack (from blosc2>=2.3.0->tables)
01:04:15 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:04:15 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:04:15 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:04:16 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
01:04:16 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:04:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:04:16 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:04:17 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:04:17 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:04:21 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 py-cpuinfo-9.0.0 tables-3.9.2
01:04:21 + pip install jinja2
01:04:21 Collecting jinja2
01:04:21 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
01:04:21 Collecting MarkupSafe>=2.0 (from jinja2)
01:04:21 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:04:21 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
01:04:21 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:04:21 Installing collected packages: MarkupSafe, jinja2
01:04:21 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.4
01:04:21 + pip install PyYAML
01:04:22 Collecting PyYAML
01:04:22 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:04:22 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:04:22 Installing collected packages: PyYAML
01:04:22 Successfully installed PyYAML-6.0.2
01:04:22 + pip install omero-py omero-web
01:04:24 Collecting omero-py
01:04:24 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:04:24 Collecting omero-web
01:04:24 Using cached omero_web-5.27.2-py3-none-any.whl.metadata (6.4 kB)
01:04:24 Collecting urllib3<2 (from omero-py)
01:04:24 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:04:24 Collecting appdirs (from omero-py)
01:04:24 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:04:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:04:25 Collecting numpy<2 (from omero-py)
01:04:25 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:04:25 Collecting Pillow>=10.0.0 (from omero-py)
01:04:25 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:04:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py) (6.0.2)
01:04:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:04:27 Collecting requests (from omero-py)
01:04:27 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:04:27 Collecting portalocker (from omero-py)
01:04:27 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
01:04:27 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
01:04:27 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:04:27 Collecting Django<4.3,>=4.2.3 (from omero-web)
01:04:27 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
01:04:27 Collecting django-pipeline==2.1.0 (from omero-web)
01:04:27 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:04:28 Collecting django-cors-headers==3.7.0 (from omero-web)
01:04:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:04:28 Collecting whitenoise>=5.3.0 (from omero-web)
01:04:28 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
01:04:28 Collecting gunicorn>=19.3 (from omero-web)
01:04:28 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:04:28 Collecting omero-marshal>=0.7.0 (from omero-web)
01:04:28 Using cached omero_marshal-0.9.0-py3-none-any.whl.metadata (2.2 kB)
01:04:28 Collecting pytz (from omero-web)
01:04:28 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:04:28 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web) (24.1)
01:04:28 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web)
01:04:28 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:04:28 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web)
01:04:28 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
01:04:28 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:04:28 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
01:04:28 Collecting idna<4,>=2.5 (from requests->omero-py)
01:04:28 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:04:28 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:04:28 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
01:04:28 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web)
01:04:28 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:04:28 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:04:28 Using cached omero_web-5.27.2-py3-none-any.whl (2.8 MB)
01:04:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:04:28 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:04:28 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:04:28 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
01:04:29 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:04:29 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:04:29 Using cached omero_marshal-0.9.0-py3-none-any.whl (88 kB)
01:04:29 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB)
01:04:29 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
01:04:29 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:04:29 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
01:04:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:04:29 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:04:29 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:04:29 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:04:29 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
01:04:29 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
01:04:29 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:04:29 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
01:04:29 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:04:29 Installing collected packages: pytz, django-pipeline, appdirs, whitenoise, urllib3, typing-extensions, sqlparse, portalocker, Pillow, omero-marshal, numpy, idna, gunicorn, charset-normalizer, certifi, requests, concurrent-log-handler, asgiref, omero-py, Django, django-cors-headers, omero-web
01:04:30 Attempting uninstall: numpy
01:04:30 Found existing installation: numpy 2.0.2
01:04:30 Uninstalling numpy-2.0.2:
01:04:30 Successfully uninstalled numpy-2.0.2
01:04:37 Successfully installed Django-4.2.16 Pillow-11.0.0 appdirs-1.4.4 asgiref-3.8.1 certifi-2024.8.30 charset-normalizer-3.4.0 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-pipeline-2.1.0 gunicorn-23.0.0 idna-3.10 numpy-1.26.4 omero-marshal-0.9.0 omero-py-5.19.5 omero-web-5.27.2 portalocker-2.10.1 pytz-2024.2 requests-2.32.3 sqlparse-0.5.1 typing-extensions-4.12.2 urllib3-1.26.20 whitenoise-6.7.0
01:04:37 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins6872156205467029004.sh
01:04:37 + source /home/settings.env
01:04:37 ++ OMERO_DB_HOST=pg
01:04:37 ++ OMERO_DB_USER=postgres
01:04:37 ++ OMERO_DB_PASS=
01:04:37 ++ OMERO_ROOT_PASS=omero
01:04:37 ++ OMERO_DATA_DIR=/OMERO
01:04:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:04:37 + OMERO_DB_NAME=OMERO-test-integration
01:04:37 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:04:37 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:04:37 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
01:04:37 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:04:37 ++ deactivate nondestructive
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -n /bin/bash -o -n '' ']'
01:04:37 ++ hash -r
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ unset VIRTUAL_ENV
01:04:37 ++ '[' '!' nondestructive = nondestructive ']'
01:04:37 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:04:37 ++ export VIRTUAL_ENV
01:04:37 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:37 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:37 ++ export PATH
01:04:37 ++ '[' -n '' ']'
01:04:37 ++ '[' -z '' ']'
01:04:37 ++ _OLD_VIRTUAL_PS1=
01:04:37 ++ PS1='(.venv3) '
01:04:37 ++ export PS1
01:04:37 ++ '[' -n /bin/bash -o -n '' ']'
01:04:37 ++ hash -r
01:04:37 + omero admin stop
01:04:39 Waiting on shutdown. Use CTRL-C to exit
01:04:39 .+ deactivate
01:04:50 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:04:50 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:50 + export PATH
01:04:50 + unset _OLD_VIRTUAL_PATH
01:04:50 + '[' -n '' ']'
01:04:50 + '[' -n /bin/bash -o -n '' ']'
01:04:50 + hash -r
01:04:50 + '[' -n '' ']'
01:04:50 + unset VIRTUAL_ENV
01:04:50 + '[' '!' '' = nondestructive ']'
01:04:50 + unset -f deactivate
01:04:50 + sleep 5
01:04:55 + dropdb -f -h pg -U postgres OMERO-test-integration
01:04:55 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 Copied 1 artifact from "OMERO-build" build number 216
01:04:56 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 213
01:04:56 Copied 2 artifacts from "OMERO-build-build" build number 224
01:04:56 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins3792049911440532187.sh
01:04:56 + source /home/settings.env
01:04:56 ++ OMERO_DB_HOST=pg
01:04:56 ++ OMERO_DB_USER=postgres
01:04:56 ++ OMERO_DB_PASS=
01:04:56 ++ OMERO_ROOT_PASS=omero
01:04:56 ++ OMERO_DATA_DIR=/OMERO
01:04:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:04:56 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:04:56 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
01:04:56 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
01:04:56 + OMERO_DB_NAME=OMERO-test-integration
01:04:56 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
01:04:56 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
01:04:56 + SRC=/home/omero/workspace/OMERO-test-integration/src
01:04:56 ++ ls openmicroscopy-5.6.3-513-15a767fb95-ice36.zip
01:04:56 + ZIP_SRC=openmicroscopy-5.6.3-513-15a767fb95-ice36.zip
01:04:56 + unzip openmicroscopy-5.6.3-513-15a767fb95-ice36.zip
01:04:56 Archive: openmicroscopy-5.6.3-513-15a767fb95-ice36.zip
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.classpath-template
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/Pull_Request_Template.md
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/workflows/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/workflows/docker_build.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/workflows/release.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/workflows/source_build.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.github/workflows/update.yaml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.mailmap
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/.project
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/CMakeLists.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/CONTRIBUTING.md
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/Dockerfile
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/LICENSE.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/README.md
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/SUPPORT.md
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/build.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/build.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/.classpath
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/.project
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/excludebugs.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/global.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/hibernate.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/lifecycle.xml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/version.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/scripts/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/scripts/parse_version
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/scripts/source-archive.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/README.md
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/plugins/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/plugins/robot.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/robot.template
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/annotation.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/login.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/thumbs.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/tree.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/web/webadmin.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/resources/well_sample_posXY.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/robot_setup.sh
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/annotate_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/create_scenario.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/delete_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/download_options_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/filter_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/forms_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/history_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/post_copy_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/post_cut_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/post_drag_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/post_manage_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/rdef_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/search.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/search_annotation_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/show_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/spw_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/tagging_test.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/view_image.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/webadmin_create_group_and_user.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/webadmin_login.robot
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tests/ui/testcases/web/webadmin_user_settings.robot
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/CMakeLists.txt
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/FindIce.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/GTest.cmake
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/TemplateCmdConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/TemplateConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/TemplateShellConfig.cmake.in
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/Version.cmake
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CMakeLists.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CONTRIBUTORS
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/LICENSE
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/README
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_pred_impl_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_test_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_ex_test.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_unittest.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_test_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.cc
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/README.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPop.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPush.h
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/IcePortPop.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/IcePortPush.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ObjectFactory.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ObjectFactory.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ObjectFactoryRegistrar.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/ObjectFactoryRegistrar.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/RTypesI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/RTypesI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/all.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/callbacks.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/callbacks.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/client.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/client.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/clientF.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/clientF.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/conversions.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/conversions.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/internal/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/internal/fixes.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/min.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/DetailsI.cpp
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/ElectricPotentialI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/ElectricPotentialI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/FrequencyI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/FrequencyI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/LengthI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/LengthI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/ObjectFactory.h
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/TemperatureI.h
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/TimeI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/model/TimeI.h
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/sys/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/sys/ParametersI.cpp
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/src/omero/sys/ParametersI.h
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01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroFS/test/integration/
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01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/chmod/
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01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/chown/
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01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/delete/
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/thumbnail/SingleFileTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/bin/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/bin/omero
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/bin/setpythonpath.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/bin/winconfig.bat
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/build.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/createSession.py
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/load.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/projection_1.py
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/submit.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/examples/upload.omero
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/ice.config
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/ivy.xml
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/manualtests/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/manualtests/README.txt
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/manualtests/populate_roi_test.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/setup.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/conftest.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/__init__.py
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/clitest/
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/clitest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/clitest/cli.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/clitest/test_user.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/fstest/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_annotation.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chgrp.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chmod.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_get_objects.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image_wrapper.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_multi_group.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_performance.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_permissions.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_pixels.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_plate_wrapper.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_rdefs.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_search_objects.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_services.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_ticket10618.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_user.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/helpers.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns.csv
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_empty.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_fail.yml
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/test_metadata_mapannotations.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/test_populate.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/metadata/test_pydict_text.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.cfg
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.py
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.cfg
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptsharness/test_harness.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/script.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_cli.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_coverage.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_inputs.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_ping.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_rand.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_repo.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_script_utils.py
01:04:56 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/tablestest/
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_4_4_5.h5.bz2
01:04:56 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_5_3_4.h5.bz2
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/tablestest/test_populate_metadata.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/test_annotation.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/test_annotationPermissions.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/test_chgrp.py
01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/test_chmod.py
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01:04:56 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroPy/test/integration/test_pixelsService.py
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/lib/linux-native/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/lib/patches/
01:04:57 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/lib/patches/hibernate-3.5-ColumnTransformer.patch.gz
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/lib/repository/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/3-3-2_rgb.lut
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/janelia/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/janelia/pup_br.lut
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/janelia/pup_nr.lut
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/ncsa_paledit/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/ncsa_paledit/16_colors.lut
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/ncsa_paledit/royal.lut
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/physics.lut
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/thermal.lut
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/luts/wcif/cyan_hot.lut
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/omero.class
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/setup.cfg
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/misc/Makefile
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01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/misc/enums.py
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__10/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__11/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__2/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__3/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__4/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__5/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__6/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__7/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__8/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3A__9/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__4/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__5/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__6/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO3__7/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.1__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.2__0/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.2__0/t/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.3__0/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4.4__0/
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01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.0__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.1__1/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.2__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__1/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__2/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__3/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:04:57 creating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/schema.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/sql/psql/OMERO5.4__0/views.sql
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/test.xml
01:04:57 inflating: openmicroscopy-5.6.3-513-15a767fb95-ice36/update_dependencies.sh
01:04:57 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/antlib/resources/gitversion.xml
01:04:57 extracting: openmicroscopy-5.6.3-513-15a767fb95-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:04:57 + rm -f openmicroscopy-5.6.3-513-15a767fb95-ice36.zip
01:04:57 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-513-15a767fb95-ice36 /home/omero/workspace/OMERO-test-integration/src
01:04:57 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
01:04:57 ++ deactivate nondestructive
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -n /bin/bash -o -n '' ']'
01:04:57 ++ hash -r
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ unset VIRTUAL_ENV
01:04:57 ++ '[' '!' nondestructive = nondestructive ']'
01:04:57 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
01:04:57 ++ export VIRTUAL_ENV
01:04:57 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:57 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:57 ++ export PATH
01:04:57 ++ '[' -n '' ']'
01:04:57 ++ '[' -z '' ']'
01:04:57 ++ _OLD_VIRTUAL_PS1=
01:04:57 ++ PS1='(.venv3) '
01:04:57 ++ export PS1
01:04:57 ++ '[' -n /bin/bash -o -n '' ']'
01:04:57 ++ hash -r
01:04:57 + for x in *.tar.gz
01:04:57 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:04:57 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:04:57 Installing build dependencies: started
01:05:00 Installing build dependencies: finished with status 'done'
01:05:00 Getting requirements to build wheel: started
01:05:00 Getting requirements to build wheel: finished with status 'done'
01:05:00 Preparing metadata (pyproject.toml): started
01:05:00 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:00 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:05:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:05:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:05:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:05:00 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:05:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0)
01:05:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:05:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:05:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:05:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
01:05:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0)
01:05:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:05:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
01:05:00 Building wheels for collected packages: omero-dropbox
01:05:00 Building wheel for omero-dropbox (pyproject.toml): started
01:05:00 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:05:00 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49058 sha256=f34d937848011d86157c986ea1654373e9a361103295c3eee017b4e50a87c0a5
01:05:00 Stored in directory: /home/omero/.cache/pip/wheels/ef/93/2d/d44d5be6e4d9a58eecdbeb6e3385179e95ae7b80719377e781
01:05:00 Successfully built omero-dropbox
01:05:00 Installing collected packages: omero-dropbox
01:05:00 Successfully installed omero-dropbox-5.7.1.dev0
01:05:01 + for x in *.tar.gz
01:05:01 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:05:01 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:05:01 Installing build dependencies: started
01:05:03 Installing build dependencies: finished with status 'done'
01:05:03 Getting requirements to build wheel: started
01:05:03 Getting requirements to build wheel: finished with status 'done'
01:05:03 Preparing metadata (pyproject.toml): started
01:05:03 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:03 Building wheels for collected packages: omero_marshal
01:05:03 Building wheel for omero_marshal (pyproject.toml): started
01:05:04 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:05:04 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ce8fe7fa7790aa3a46840d072618e95d111d52197eb9cc26a41022edc8975265
01:05:04 Stored in directory: /home/omero/.cache/pip/wheels/1a/3a/cd/b39392f5c8ba80a35bab4a0f80f93c7c4729cce6868750f4f3
01:05:04 Successfully built omero_marshal
01:05:04 Installing collected packages: omero_marshal
01:05:04 Attempting uninstall: omero_marshal
01:05:04 Found existing installation: omero-marshal 0.9.0
01:05:04 Uninstalling omero-marshal-0.9.0:
01:05:04 Successfully uninstalled omero-marshal-0.9.0
01:05:04 Successfully installed omero_marshal-0.9.1.dev0
01:05:04 + for x in *.tar.gz
01:05:04 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:05:04 Processing ./omero_py-5.19.6.dev0.tar.gz
01:05:05 Installing build dependencies: started
01:05:07 Installing build dependencies: finished with status 'done'
01:05:07 Getting requirements to build wheel: started
01:05:07 Getting requirements to build wheel: finished with status 'done'
01:05:07 Preparing metadata (pyproject.toml): started
01:05:07 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:05:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:05:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:05:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:05:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0)
01:05:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:05:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:05:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:05:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
01:05:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0)
01:05:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:05:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
01:05:07 Building wheels for collected packages: omero-py
01:05:07 Building wheel for omero-py (pyproject.toml): started
01:05:08 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:05:08 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783246 sha256=f26aea8f7cbe133fce06fc00bfa4e2354a5f3e9bb2ab681c1b12b0f1b83afaf6
01:05:08 Stored in directory: /home/omero/.cache/pip/wheels/0e/51/53/0205c66cdbe856d4da23e6b9c5d613133b733ef358e57fa643
01:05:08 Successfully built omero-py
01:05:08 Installing collected packages: omero-py
01:05:08 Attempting uninstall: omero-py
01:05:08 Found existing installation: omero-py 5.19.5
01:05:08 Uninstalling omero-py-5.19.5:
01:05:09 Successfully uninstalled omero-py-5.19.5
01:05:11 Successfully installed omero-py-5.19.6.dev0
01:05:11 + for x in *.tar.gz
01:05:11 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
01:05:11 Processing ./omero_scripts-5.8.4.dev0.tar.gz
01:05:11 Installing build dependencies: started
01:05:13 Installing build dependencies: finished with status 'done'
01:05:13 Getting requirements to build wheel: started
01:05:13 Getting requirements to build wheel: finished with status 'done'
01:05:14 Preparing metadata (pyproject.toml): started
01:05:14 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:14 Building wheels for collected packages: omero-scripts
01:05:14 Building wheel for omero-scripts (pyproject.toml): started
01:05:14 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:05:14 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116645 sha256=78a354ed53e926ac27010962e9ddcbec79fb4208574916b0d58b0e6de049ccab
01:05:14 Stored in directory: /home/omero/.cache/pip/wheels/28/3e/92/6522b883548147569f7375ed3132e6964d3645235d0b7e283f
01:05:14 Successfully built omero-scripts
01:05:14 Installing collected packages: omero-scripts
01:05:14 Successfully installed omero-scripts-5.8.4.dev0
01:05:14 + for x in *.tar.gz
01:05:14 + pip install -U omero_web-5.27.3.dev0.tar.gz
01:05:15 Processing ./omero_web-5.27.3.dev0.tar.gz
01:05:15 Installing build dependencies: started
01:05:17 Installing build dependencies: finished with status 'done'
01:05:17 Getting requirements to build wheel: started
01:05:17 Getting requirements to build wheel: finished with status 'done'
01:05:17 Preparing metadata (pyproject.toml): started
01:05:17 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:17 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
01:05:17 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.25)
01:05:17 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (4.2.16)
01:05:17 Requirement already satisfied: django-pipeline==2.1.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.1.0)
01:05:17 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (3.7.0)
01:05:18 Collecting django-csp (from omero-web==5.27.3.dev0)
01:05:18 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:05:18 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (6.7.0)
01:05:18 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (23.0.0)
01:05:18 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
01:05:18 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (11.0.0)
01:05:18 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
01:05:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
01:05:18 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
01:05:18 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (3.8.1)
01:05:18 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (0.5.1)
01:05:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
01:05:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
01:05:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
01:05:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
01:05:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
01:05:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
01:05:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
01:05:18 Requirement already satisfied: typing-extensions>=4 in ./.venv3/lib/python3.9/site-packages (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (4.12.2)
01:05:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.4.0)
01:05:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
01:05:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
01:05:18 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:05:18 Building wheels for collected packages: omero-web
01:05:18 Building wheel for omero-web (pyproject.toml): started
01:05:19 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:05:19 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766670 sha256=2ae4326b07aa630ebc544acf743b47efe8be6ad46a2a8f33cf0c638f2d4a6e81
01:05:19 Stored in directory: /home/omero/.cache/pip/wheels/f0/b3/64/dc77f8e1a2385b2f8ef248e63a59b8ba8d51c2c928e147e9d6
01:05:19 Successfully built omero-web
01:05:19 Installing collected packages: django-csp, omero-web
01:05:19 Attempting uninstall: omero-web
01:05:19 Found existing installation: omero-web 5.27.2
01:05:19 Uninstalling omero-web-5.27.2:
01:05:19 Successfully uninstalled omero-web-5.27.2
01:05:20 Successfully installed django-csp-3.8 omero-web-5.27.3.dev0
01:05:20 + pip install omero-certificates
01:05:20 Collecting omero-certificates
01:05:20 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:05:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6.dev0)
01:05:20 Collecting distro==1.8.0 (from omero-certificates)
01:05:20 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:05:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:05:20 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:05:20 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:05:20 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:05:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0)
01:05:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:05:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:05:20 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:05:20 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
01:05:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0)
01:05:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:05:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
01:05:20 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:05:21 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:05:21 Installing collected packages: distro, omero-certificates
01:05:21 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:05:21 + for x in omero-cli-duplicate
01:05:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:05:21 Collecting omero-cli-duplicate
01:05:21 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-cagv572a/omero-cli-duplicate_34ac6adf9a4d406198a65cdd7fdbf9cd
01:05:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-cagv572a/omero-cli-duplicate_34ac6adf9a4d406198a65cdd7fdbf9cd
01:05:22 Running command git checkout -b merge_ci --track origin/merge_ci
01:05:22 Switched to a new branch 'merge_ci'
01:05:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:05:22 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 95883ad54a429dd18df0274dfa1a1c494eaa034c
01:05:22 Installing build dependencies: started
01:05:24 Installing build dependencies: finished with status 'done'
01:05:24 Getting requirements to build wheel: started
01:05:24 Getting requirements to build wheel: finished with status 'done'
01:05:24 Preparing metadata (pyproject.toml): started
01:05:24 Preparing metadata (pyproject.toml): finished with status 'done'
01:05:24 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6.dev0)
01:05:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:05:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:05:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:05:24 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:05:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0)
01:05:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:05:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:05:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:05:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
01:05:24 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0)
01:05:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:05:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
01:05:24 Building wheels for collected packages: omero-cli-duplicate
01:05:24 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:05:25 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:05:25 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=53b4b1a0e1ee56a19dc161a677204f729c1c2ececcfa356e00b7f069aa0c3028
01:05:25 Stored in directory: /tmp/pip-ephem-wheel-cache-_c7o_0ax/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:05:25 Successfully built omero-cli-duplicate
01:05:25 Installing collected packages: omero-cli-duplicate
01:05:25 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:05:25 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
01:05:25 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
01:05:25 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:05:25 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
01:05:25
01:05:25 check-ivy:
01:05:25 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
01:05:25 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
01:05:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:26 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:26
01:05:26 build-scons:
01:05:26 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
01:05:26
01:05:26 build:
01:05:26 No sub-builds to iterate on
01:05:26 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:26 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:26 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:05:26 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:05:26
01:05:26 tools-init:
01:05:26 no-op
01:05:27
01:05:27 retrieve:
01:05:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:27 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:27 WARNING: An illegal reflective access operation has occurred
01:05:27 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-test-integration/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:05:27 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:05:27 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:05:27 WARNING: All illegal access operations will be denied in a future release
01:05:37
01:05:37 prepare:
01:05:37 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:37 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
01:05:37 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
01:05:38
01:05:38 pre-compile:
01:05:38 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:38 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:38 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:38 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:38 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
01:05:38
01:05:38 compile:
01:05:38 no-op
01:05:38
01:05:38 package:
01:05:38 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
01:05:39
01:05:39 install:
01:05:39 :: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-513-15a767fb95-ice36-ice36 :: integration :: Sat Oct 26 01:05:26 UTC 2024
01:05:39 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
01:05:39 :: publishing :: omero#omero_client
01:05:39 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-15a767fb95-ice36-ice36/omero_client-5.6.3-513-15a767fb95-ice36-ice36.jar
01:05:39 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-15a767fb95-ice36-ice36/omero_client-5.6.3-513-15a767fb95-ice36-ice36.xml
01:05:39 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:39 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:39
01:05:39 retrieve:
01:05:39 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:39 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:39 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
01:05:39
01:05:39 dist:
01:05:39 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
01:05:39 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
01:05:39 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:05:39 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
01:05:39 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
01:05:39 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:39 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
01:05:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
01:05:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:05:40
01:05:40 copy-licenses:
01:05:40 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
01:05:40 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
01:05:40
01:05:40 copy-history:
01:05:40 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:40
01:05:40 copy-etc:
01:05:40 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:05:40 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
01:05:40
01:05:40 copy-sql:
01:05:40 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
01:05:42
01:05:42 copy-server:
01:05:42 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:05:43
01:05:43 copy-client:
01:05:43 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
01:05:44 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:05:44
01:05:44 update-version:
01:05:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
01:05:44
01:05:44 create-workdirs:
01:05:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
01:05:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
01:05:44
01:05:44 copy-luts:
01:05:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:05:44 Copying 39 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
01:05:44
01:05:44 test-compile:
01:05:44 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
01:05:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:05:45
01:05:45 testng-init:
01:05:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:05:45 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:48 01:05:47,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:05:48 01:05:47,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - No custom configurators were discovered as a service.
01:05:48 01:05:47,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:05:48 01:05:47,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:05:48 01:05:47,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:05:48 01:05:47,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:05:48 01:05:47,655 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:05:48 01:05:47,655 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:05:48 01:05:47,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:05:48 01:05:47,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:05:48 01:05:47,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:05:48 01:05:47,659 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@66e478c7 - Resource [logback.xml] occurs multiple times on the classpath.
01:05:48 01:05:47,659 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@66e478c7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:05:48 01:05:47,659 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@66e478c7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:05:48 01:05:47,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:05:48 01:05:47,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:05:48 01:05:47,925 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:05:48 01:05:47,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1a35f99a - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:05:48 01:05:47,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1a35f99a - Please move "immediateFlush" property into the enclosing appender.
01:05:48 01:05:47,992 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1a35f99a - Setting the "immediateFlush" property of the enclosing appender to true
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:05:48 01:05:47,993 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:05:48 01:05:47,994 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c32c581 - End of configuration.
01:05:48 01:05:47,996 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@10055e52 - Registering current configuration as safe fallback point
01:05:48 01:05:47,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ca413f6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:05:48
01:05:48 lifecycle.test-compile:
01:05:48 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:48 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
01:05:48 warning: [options] bootstrap class path not set in conjunction with -source 8
01:05:49 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:49 import omero.grid.RawAccessRequest;
01:05:49 ^
01:05:49 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:49 import omero.grid.RawAccessRequest;
01:05:49 ^
01:05:50 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:50 import omero.grid.RawAccessRequest;
01:05:50 ^
01:05:50 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:50 import omero.model.ImportJob;
01:05:50 ^
01:05:50 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:05:50 import omero.model.ImportJobI;
01:05:50 ^
01:05:50 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:05:50 IObject link = (IObject) linkClass.newInstance();
01:05:50 ^
01:05:50 where T is a type-variable:
01:05:50 T extends Object declared in class Class
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:05:51 T copy = (T) obj.getClass().newInstance();
01:05:51 ^
01:05:51 where T is a type-variable:
01:05:51 T extends Object declared in class Class
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:51 RawAccessRequest raw = new RawAccessRequest();
01:05:51 ^
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:51 RawAccessRequest raw = new RawAccessRequest();
01:05:51 ^
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:51 raw.repoUuid = legacy.root().getHash().getValue();
01:05:51 ^
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:51 raw.command = "rm";
01:05:51 ^
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:51 raw.args = Arrays.asList(path);
01:05:51 ^
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:05:51 final IObject link = linkClass.newInstance();
01:05:51 ^
01:05:51 where T is a type-variable:
01:05:51 T extends Object declared in class Class
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:05:51 originalLink.setChild(annotationClass.newInstance());
01:05:51 ^
01:05:51 where T is a type-variable:
01:05:51 T extends Object declared in class Class
01:05:51 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:05:51 RoiResult r = svc.findByImage(id, new RoiOptions());
01:05:51 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:52 final RawAccessRequest request = new RawAccessRequest();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:52 final RawAccessRequest request = new RawAccessRequest();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:52 request.repoUuid = repo.root().getHash().getValue();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:52 request.command = "exists";
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:52 request.args = Collections.singletonList(dirPath);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:52 final RawAccessRequest request = new RawAccessRequest();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:05:52 final RawAccessRequest request = new RawAccessRequest();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:05:52 request.repoUuid = repo.root().getHash().getValue();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:05:52 request.command = "exists";
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:05:52 request.args = Collections.singletonList(dirName);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:52 final ImportJob importJob = new ImportJobI();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:05:52 final ImportJob importJob = new ImportJobI();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:05:52 importJob.setImageName(omero.rtypes.rstring(name));
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:05:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:05:52 final String savedName = sent.getImageName().getValue().toString();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:05:52 final String savedDesc = sent.getImageDescription().getValue().toString();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:05:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:05:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:05:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 RoiResult r = svc.findByImage(image.getId().getValue(),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:05:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:05:52 table = svc.getTable(f.getId().getValue());
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 RoiResult r = svc.findByImage(image.getId().getValue(),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:05:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:05:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:05:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:05:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:05:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:05:52 svc.getShapeStatsRestricted(
01:05:52 ^
01:05:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:05:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:05:52 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:05:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:05:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:05:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:05:53 request.typesToIgnore = Collections.singletonList("Annotation");
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:05:53 request.typesToIgnore = Collections.singletonList("Annotation");
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:05:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:05:53 p2.setRelatedTo(p1);
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:05:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:05:53 pixels1.setRelatedTo(pixels2);
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:05:53 Pixels pixels = pixels1.getRelatedTo();
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:05:53 Assert.assertNull(pixels1.getRelatedTo());
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:05:53 pixels1.setRelatedTo(pixels2);
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:05:53 Pixels pixels = pixels1.getRelatedTo();
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:05:53 Assert.assertNull(pixels1.getRelatedTo());
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:05:53 ^
01:05:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:05:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:05:53 ^
01:05:53 Note: Some input files use unchecked or unsafe operations.
01:05:53 Note: Recompile with -Xlint:unchecked for details.
01:05:53 88 warnings
01:05:53 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_421518641.tmp
01:05:53 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:05:53 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:05:53 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-15a767fb95-ice36-ice36 :: integration :: Sat Oct 26 01:05:44 UTC 2024
01:05:53 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:05:53 :: publishing :: omero#OmeroJava-test
01:05:53 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.jar
01:05:53 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.xml
01:05:53
01:05:53 BUILD SUCCESSFUL
01:05:53 Total time: 28 seconds
01:05:53 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
01:05:53 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:05:53 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:05:53 + omero config set omero.db.name OMERO-test-integration
01:05:54 + omero config set omero.db.host pg
01:05:56 + omero config set omero.db.user postgres
01:05:57 + omero config set omero.db.poolsize 50
01:05:58 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
01:05:59 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
01:06:00 + omero config set omero.ports.prefix 1
01:06:01 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
01:06:03 + omero certificates
01:06:04 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:06:04 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
01:06:04 + createdb -h pg -U postgres OMERO-test-integration
01:06:05 + omero db script -f dbsetup.sql '' '' omero
01:06:06 WARNING: Positional arguments are deprecated
01:06:06 Using OMERO5.4 for version
01:06:06 Using 0 for patch
01:06:06 Using password from commandline
01:06:07 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
01:06:07 BEGIN
01:06:07 CREATE FUNCTION
01:06:07 CREATE FUNCTION
01:06:07 assert_db_server_prerequisites
01:06:07 --------------------------------
01:06:07
01:06:07 (1 row)
01:06:07
01:06:07 DROP FUNCTION
01:06:07 DROP FUNCTION
01:06:07 CREATE DOMAIN
01:06:07 CREATE DOMAIN
01:06:07 CREATE DOMAIN
01:06:07 CREATE DOMAIN
01:06:07 CREATE DOMAIN
01:06:07 CREATE TYPE
01:06:07 CREATE TYPE
01:06:07 CREATE TYPE
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01:06:08 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
01:06:08 ALTER TABLE
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01:06:08 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
01:06:08 ALTER TABLE
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01:06:08 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
01:06:08 ALTER TABLE
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01:06:08 ALTER TABLE
01:06:08 CREATE TABLE
01:06:08 DROP TABLE
01:06:08 CREATE VIEW
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01:06:08 DROP TABLE
01:06:08 CREATE VIEW
01:06:08 DROP TABLE
01:06:08 CREATE VIEW
01:06:08 CREATE FUNCTION
01:06:08 CREATE TRIGGER
01:06:08 CREATE FUNCTION
01:06:08 CREATE TRIGGER
01:06:08 CREATE FUNCTION
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01:06:08 CREATE TRIGGER
01:06:08 CREATE FUNCTION
01:06:08 CREATE TRIGGER
01:06:08 CREATE FUNCTION
01:06:08 CREATE TRIGGER
01:06:08 CREATE FUNCTION
01:06:08 CREATE TRIGGER
01:06:08 CREATE INDEX
01:06:08 CREATE INDEX
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01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE FUNCTION
01:06:10 SET CONSTRAINTS
01:06:10 CREATE FUNCTION
01:06:10 CREATE SEQUENCE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 CREATE INDEX
01:06:10 CREATE FUNCTION
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE SEQUENCE
01:06:10 INSERT 0 1
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE TABLE
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 INSERT 0 1
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
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01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 UPDATE 1
01:06:10 ALTER TABLE
01:06:10 CREATE FUNCTION
01:06:10 CREATE TABLE
01:06:10 INSERT 0 1
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 CREATE INDEX
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 ALTER TABLE
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE TABLE
01:06:10 INSERT 0 1
01:06:10 INSERT 0 1
01:06:10 CREATE TABLE
01:06:10 INSERT 0 1
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 CREATE TABLE
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE INDEX
01:06:10 CREATE FUNCTION
01:06:10 CREATE TRIGGER
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:10 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 CREATE FUNCTION
01:06:11 CREATE TRIGGER
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 DROP TABLE
01:06:11 DROP TABLE
01:06:11 DROP TABLE
01:06:11 DROP TABLE
01:06:11 DROP TABLE
01:06:11 CREATE VIEW
01:06:11 CREATE VIEW
01:06:11 CREATE VIEW
01:06:11 CREATE VIEW
01:06:11 CREATE VIEW
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 ALTER TABLE
01:06:11 CREATE FUNCTION
01:06:11 CREATE TRIGGER
01:06:11 CREATE TABLE
01:06:11 CREATE INDEX
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 CREATE FUNCTION
01:06:11 CREATE FUNCTION
01:06:11 CREATE TRIGGER
01:06:11 CREATE TRIGGER
01:06:11 CREATE INDEX
01:06:11 UPDATE 1
01:06:11 COMMIT
01:06:11 + rm dbsetup.sql
01:06:11 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:06:11 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
01:06:11 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
01:06:11 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
01:06:11 + for f in $OMERO_PROFILE/blitz/*
01:06:11 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
01:06:11 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
01:06:11 + for f in $OMERO_PROFILE/blitz/*
01:06:11 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
01:06:11 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
01:06:11 + omero config set omero.mail.config true
01:06:12 + omero config set omero.mail.fake true
01:06:13 + omero config set omero.mail.port 2525
01:06:14 + BUILD_ID=DONT_KILL_ME
01:06:14 + omero admin start
01:06:24 No descriptor given. Using etc/grid/default.xml
01:06:46 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
01:06:46 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
01:06:46 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
01:06:46 Waiting on startup. Use CTRL-C to exit
01:06:46 + omero admin waitup
01:06:50 Waiting on startup. Use CTRL-C to exit
01:06:50 + omero admin diagnostics
01:06:57 ERROR:omero.util.UpgradeCheck:HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=5.19.6.dev0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f2e4a005550>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
01:06:57
01:06:57 ================================================================================
01:06:57 OMERO Diagnostics (admin)
01:06:57 ================================================================================
01:06:57
01:06:57 Commands: java -version 11.0.24 (/usr/bin/java)
01:06:58 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
01:06:58 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:06:58 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:06:58 Commands: psql --version 16.4 (/usr/bin/psql)
01:06:59 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:06:59
01:06:59 Component: OMERO.py 5.19.6.dev0
01:06:59 Component: OMERO.server 5.6.3-513-15a767fb95-ice36-ice36
01:06:59
01:06:59 Server: icegridnode running
01:06:59 Server: Blitz-0 active (pid = 1029080, enabled)
01:06:59 Server: DropBox active (pid = 1029101, enabled)
01:06:59 Server: FileServer active (pid = 1029109, enabled)
01:06:59 Server: Indexer-0 active (pid = 1029110, enabled)
01:06:59 Server: MonitorServer active (pid = 1029171, enabled)
01:06:59 Server: OMERO.Glacier2 active (pid = 1029112, enabled)
01:06:59 Server: OMERO.IceStorm active (pid = 1029119, enabled)
01:06:59 Server: PixelData-0 active (pid = 1029135, enabled)
01:06:59 Server: Processor-0 active (pid = 1029149, enabled)
01:06:59 Server: Tables-0 active (pid = 1029166, enabled)
01:06:59 Server: TestDropBox inactive (enabled)
01:06:59
01:06:59 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
01:06:59 Log files: Blitz-0.log 142.5 KB errors=1 warnings=2
01:06:59 Log files: DropBox.log 1.4 KB
01:06:59 Log files: FileServer.log 114 B
01:06:59 Log files: Indexer-0.log 2.9 KB errors=0 warnings=2
01:06:59 Log files: MonitorServer.log 1.2 KB
01:06:59 Log files: PixelData-0.log 3.7 KB errors=0 warnings=2
01:06:59 Log files: Processor-0.log 856 B
01:06:59 Log files: Tables-0.log 1.1 KB
01:06:59 Log files: TestDropBox.log n/a
01:06:59 Log files: master.err 2.1 KB
01:06:59 Log files: master.out 41.5 KB
01:06:59 Log files: Total size 0.20 MB
01:06:59
01:06:59
01:06:59 Environment:OMERO_HOME=(unset)
01:06:59 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
01:06:59 Environment:OMERO_NODE=(unset)
01:06:59 Environment:OMERO_MASTER=(unset)
01:06:59 Environment:OMERO_USERDIR=(unset)
01:06:59 Environment:OMERO_TMPDIR=(unset)
01:06:59 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:59 Environment:PYTHONPATH=(unset)
01:06:59 Environment:ICE_HOME=/opt/ice-3.6.5
01:06:59 Environment:LD_LIBRARY_PATH=(unset)
01:06:59 Environment:DYLD_LIBRARY_PATH=(unset)
01:06:59
01:06:59 OMERO SSL port:14064
01:06:59 OMERO TCP port:14063
01:06:59 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
01:06:59 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 485861)
01:06:59
01:06:59 JVM settings: Blitz-${index} -Xmx9600m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:06:59 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:06:59 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:06:59 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:06:59
01:06:59 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 26 October 2024 7337fc98a40cf95700a08dd61e07f95eadc807b7
01:06:59 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 26 October 2024 7337fc98a40cf95700a08dd61e07f95eadc807b7
01:06:59 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 26 October 2024 7337fc98a40cf95700a08dd61e07f95eadc807b7
01:06:59 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 26 October 2024 460adf1e33202bf6a54ad59be5f6cd9159036d11
01:06:59 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
01:06:59 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
01:06:59 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
01:06:59 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
01:06:59 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
01:06:59 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
01:06:59 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
01:07:00 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/208
01:07:00 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/208
01:07:00 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:07:00 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
01:07:00 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
01:07:00 Running the integration tests with -Dtestng.useDefaultListeners=true
01:07:00 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/integration integration
01:07:00 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:07:00 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
01:07:01 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
01:07:01
01:07:01 testng-init:
01:07:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:01 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:05 01:07:04,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:07:05 01:07:04,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - No custom configurators were discovered as a service.
01:07:05 01:07:04,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:05 01:07:04,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:05 01:07:04,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:07:05 01:07:04,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:07:05 01:07:04,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:07:05 01:07:04,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:05 01:07:04,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:05 01:07:04,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:07:05 01:07:04,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:05 01:07:04,800 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs multiple times on the classpath.
01:07:05 01:07:04,800 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:05 01:07:04,800 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:07:05 01:07:05,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:07:05 01:07:05,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:07:05 01:07:05,047 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:07:05 01:07:05,050 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:07:05 01:07:05,050 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Please move "immediateFlush" property into the enclosing appender.
01:07:05 01:07:05,115 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Setting the "immediateFlush" property of the enclosing appender to true
01:07:05 01:07:05,116 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:07:05 01:07:05,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:07:05 01:07:05,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:07:05 01:07:05,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:07:05 01:07:05,117 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:07:05 01:07:05,117 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:07:05 01:07:05,118 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1e6060f1 - End of configuration.
01:07:05 01:07:05,120 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7e49ded - Registering current configuration as safe fallback point
01:07:05 01:07:05,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:07:05
01:07:05 lifecycle.test-compile:
01:07:05 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_201226909.tmp
01:07:05 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:07:05 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
01:07:05 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-15a767fb95-ice36-ice36 :: integration :: Sat Oct 26 01:07:00 UTC 2024
01:07:05 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:07:05 :: publishing :: omero#OmeroJava-test
01:07:05 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.jar
01:07:05 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.xml
01:07:05
01:07:05 integration:
01:07:05 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:07:06 01:07:05,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:07:06 01:07:05,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
01:07:06 01:07:05,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:06 01:07:05,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:06 01:07:05,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:07:06 01:07:05,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:07:06 01:07:05,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:07:06 01:07:05,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:06 01:07:05,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:06 01:07:05,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:07:06 01:07:05,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:06 01:07:05,766 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
01:07:06 01:07:05,766 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:06 01:07:05,766 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:07:06 01:07:05,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:07:06 01:07:05,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:07:06 01:07:05,990 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:07:06 01:07:05,992 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:07:06 01:07:05,992 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
01:07:06 01:07:06,021 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:07:06 01:07:06,022 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:07:06 01:07:06,023 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
01:07:06 01:07:06,023 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
01:07:06 01:07:06,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:07:07 Oct 26, 2024 1:07:07 AM ome.system.OmeroContext prepareRefresh
01:07:07 INFO: Refreshing ome.system.OmeroContext@7f8633ae: startup date [Sat Oct 26 01:07:07 UTC 2024]; root of context hierarchy
01:07:07 Oct 26, 2024 1:07:07 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
01:07:07 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
01:07:23 eda6dfa1-f698-4cf5-97d6-1e1cf1bcf53a
01:12:24 2024-10-26 01:12:24,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:12:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:24 Caused by: Ice.CommunicatorDestroyedException: null
01:12:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:24 ... 7 common frames omitted
01:12:45 2024-10-26 01:12:45,830 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:12:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:45 Caused by: Ice.CommunicatorDestroyedException: null
01:12:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:45 ... 7 common frames omitted
01:12:51 2024-10-26 01:12:51,399 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:12:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:12:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:12:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:12:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:12:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:12:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:12:51 Caused by: Ice.CommunicatorDestroyedException: null
01:12:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:12:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:12:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:12:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:12:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:12:51 ... 7 common frames omitted
01:13:03 2024-10-26 01:13:03,837 ERROR [ ome.formats.importer.ImportLibrary] (sDataset-1) Cannot link to target
01:13:38 2024-10-26 01:13:38,178 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:13:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:13:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:13:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:13:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:13:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:13:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:13:38 Caused by: Ice.CommunicatorDestroyedException: null
01:13:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:13:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:13:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:13:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:13:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:13:38 ... 7 common frames omitted
01:14:04 2024-10-26 01:14:04,905 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:14:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:14:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:14:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:14:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:14:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:14:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:14:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:14:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:14:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:14:04 Caused by: Ice.CommunicatorDestroyedException: null
01:14:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:14:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:14:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:14:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:14:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:14:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:14:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:14:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:14:04 ... 7 common frames omitted
01:17:16 2024-10-26 01:17:16,994 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:17:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:16 Caused by: Ice.CommunicatorDestroyedException: null
01:17:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:16 ... 7 common frames omitted
01:17:18 2024-10-26 01:17:18,266 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:18 Caused by: Ice.CommunicatorDestroyedException: null
01:17:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:18 ... 7 common frames omitted
01:17:19 2024-10-26 01:17:19,401 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:19 Caused by: Ice.CommunicatorDestroyedException: null
01:17:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:19 ... 7 common frames omitted
01:17:23 2024-10-26 01:17:23,988 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:23 Caused by: Ice.CommunicatorDestroyedException: null
01:17:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:23 ... 7 common frames omitted
01:17:24 2024-10-26 01:17:24,870 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:24 Caused by: Ice.CommunicatorDestroyedException: null
01:17:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:24 ... 7 common frames omitted
01:17:25 2024-10-26 01:17:25,854 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:25 Caused by: Ice.CommunicatorDestroyedException: null
01:17:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:25 ... 7 common frames omitted
01:17:26 2024-10-26 01:17:26,793 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:26 Caused by: Ice.CommunicatorDestroyedException: null
01:17:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:26 ... 7 common frames omitted
01:17:27 2024-10-26 01:17:27,736 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:27 Caused by: Ice.CommunicatorDestroyedException: null
01:17:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:27 ... 7 common frames omitted
01:17:28 2024-10-26 01:17:28,641 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:28 Caused by: Ice.CommunicatorDestroyedException: null
01:17:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:28 ... 7 common frames omitted
01:17:29 2024-10-26 01:17:29,603 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:29 Caused by: Ice.CommunicatorDestroyedException: null
01:17:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:29 ... 7 common frames omitted
01:17:30 2024-10-26 01:17:30,479 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:30 Caused by: Ice.CommunicatorDestroyedException: null
01:17:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:30 ... 7 common frames omitted
01:17:31 2024-10-26 01:17:31,319 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:31 Caused by: Ice.CommunicatorDestroyedException: null
01:17:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:31 ... 7 common frames omitted
01:17:32 2024-10-26 01:17:32,285 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:32 Caused by: Ice.CommunicatorDestroyedException: null
01:17:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:32 ... 7 common frames omitted
01:17:33 2024-10-26 01:17:33,257 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:33 Caused by: Ice.CommunicatorDestroyedException: null
01:17:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:33 ... 7 common frames omitted
01:17:34 2024-10-26 01:17:34,026 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:34 Caused by: Ice.CommunicatorDestroyedException: null
01:17:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:34 ... 7 common frames omitted
01:17:35 2024-10-26 01:17:35,150 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:35 Caused by: Ice.CommunicatorDestroyedException: null
01:17:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:35 ... 7 common frames omitted
01:17:35 2024-10-26 01:17:35,984 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:35 Caused by: Ice.CommunicatorDestroyedException: null
01:17:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:35 ... 7 common frames omitted
01:17:36 2024-10-26 01:17:36,656 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:36 Caused by: Ice.CommunicatorDestroyedException: null
01:17:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:36 ... 7 common frames omitted
01:17:37 2024-10-26 01:17:37,377 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:17:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:37 Caused by: Ice.CommunicatorDestroyedException: null
01:17:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:37 ... 7 common frames omitted
01:17:38 2024-10-26 01:17:38,112 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:38 Caused by: Ice.CommunicatorDestroyedException: null
01:17:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:38 ... 7 common frames omitted
01:17:38 2024-10-26 01:17:38,785 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:17:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:38 Caused by: Ice.CommunicatorDestroyedException: null
01:17:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:38 ... 7 common frames omitted
01:17:39 2024-10-26 01:17:39,570 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:39 Caused by: Ice.CommunicatorDestroyedException: null
01:17:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:39 ... 7 common frames omitted
01:17:40 2024-10-26 01:17:40,350 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:17:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:40 Caused by: Ice.CommunicatorDestroyedException: null
01:17:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:40 ... 7 common frames omitted
01:17:41 2024-10-26 01:17:41,059 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:41 Caused by: Ice.CommunicatorDestroyedException: null
01:17:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:41 ... 7 common frames omitted
01:17:41 2024-10-26 01:17:41,827 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:17:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:41 Caused by: Ice.CommunicatorDestroyedException: null
01:17:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:41 ... 7 common frames omitted
01:17:42 2024-10-26 01:17:42,616 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:42 Caused by: Ice.CommunicatorDestroyedException: null
01:17:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:42 ... 7 common frames omitted
01:17:43 2024-10-26 01:17:43,321 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:43 Caused by: Ice.CommunicatorDestroyedException: null
01:17:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:43 ... 7 common frames omitted
01:17:44 2024-10-26 01:17:44,097 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:44 Caused by: Ice.CommunicatorDestroyedException: null
01:17:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:44 ... 7 common frames omitted
01:17:45 2024-10-26 01:17:45,105 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:17:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:45 Caused by: Ice.CommunicatorDestroyedException: null
01:17:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:45 ... 7 common frames omitted
01:17:46 2024-10-26 01:17:46,010 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:46 Caused by: Ice.CommunicatorDestroyedException: null
01:17:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:46 ... 7 common frames omitted
01:17:46 2024-10-26 01:17:46,951 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:17:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:46 Caused by: Ice.CommunicatorDestroyedException: null
01:17:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:46 ... 7 common frames omitted
01:17:47 2024-10-26 01:17:47,952 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:17:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:47 Caused by: Ice.CommunicatorDestroyedException: null
01:17:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:47 ... 7 common frames omitted
01:17:48 2024-10-26 01:17:48,820 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:17:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:48 Caused by: Ice.CommunicatorDestroyedException: null
01:17:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:48 ... 7 common frames omitted
01:17:49 2024-10-26 01:17:49,834 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:49 Caused by: Ice.CommunicatorDestroyedException: null
01:17:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:49 ... 7 common frames omitted
01:17:50 2024-10-26 01:17:50,775 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:17:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:50 Caused by: Ice.CommunicatorDestroyedException: null
01:17:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:50 ... 7 common frames omitted
01:17:51 2024-10-26 01:17:51,558 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:17:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:51 Caused by: Ice.CommunicatorDestroyedException: null
01:17:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:51 ... 7 common frames omitted
01:17:52 2024-10-26 01:17:52,330 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:17:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:52 Caused by: Ice.CommunicatorDestroyedException: null
01:17:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:52 ... 7 common frames omitted
01:17:53 2024-10-26 01:17:53,124 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:17:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:53 Caused by: Ice.CommunicatorDestroyedException: null
01:17:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:53 ... 7 common frames omitted
01:17:53 2024-10-26 01:17:53,852 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:17:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:53 Caused by: Ice.CommunicatorDestroyedException: null
01:17:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:53 ... 7 common frames omitted
01:17:57 2024-10-26 01:17:57,452 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:17:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:57 Caused by: Ice.CommunicatorDestroyedException: null
01:17:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:57 ... 7 common frames omitted
01:17:58 2024-10-26 01:17:58,481 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:17:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:17:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:17:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:17:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:17:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:17:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:17:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:17:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:17:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:17:58 Caused by: Ice.CommunicatorDestroyedException: null
01:17:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:17:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:17:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:17:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:17:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:17:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:17:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:17:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:17:58 ... 7 common frames omitted
01:18:00 2024-10-26 01:18:00,534 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:18:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:00 Caused by: Ice.CommunicatorDestroyedException: null
01:18:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:00 ... 7 common frames omitted
01:18:01 2024-10-26 01:18:01,780 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:01 Caused by: Ice.CommunicatorDestroyedException: null
01:18:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:01 ... 7 common frames omitted
01:18:02 2024-10-26 01:18:02,562 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:02 Caused by: Ice.CommunicatorDestroyedException: null
01:18:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:02 ... 7 common frames omitted
01:18:03 2024-10-26 01:18:03,821 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:03 Caused by: Ice.CommunicatorDestroyedException: null
01:18:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:03 ... 7 common frames omitted
01:18:04 2024-10-26 01:18:04,355 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:04 Caused by: Ice.CommunicatorDestroyedException: null
01:18:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:04 ... 7 common frames omitted
01:18:05 2024-10-26 01:18:05,782 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:05 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:05 Caused by: Ice.CommunicatorDestroyedException: null
01:18:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:05 ... 7 common frames omitted
01:18:07 2024-10-26 01:18:07,189 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:07 Caused by: Ice.CommunicatorDestroyedException: null
01:18:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:07 ... 7 common frames omitted
01:18:09 2024-10-26 01:18:09,156 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:09 Caused by: Ice.CommunicatorDestroyedException: null
01:18:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:09 ... 7 common frames omitted
01:18:10 2024-10-26 01:18:10,398 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:10 Caused by: Ice.CommunicatorDestroyedException: null
01:18:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:10 ... 7 common frames omitted
01:18:11 2024-10-26 01:18:11,593 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:11 Caused by: Ice.CommunicatorDestroyedException: null
01:18:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:11 ... 7 common frames omitted
01:18:15 2024-10-26 01:18:15,237 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:18:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:15 Caused by: Ice.CommunicatorDestroyedException: null
01:18:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:15 ... 7 common frames omitted
01:18:19 2024-10-26 01:18:19,184 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:18:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:19 Caused by: Ice.CommunicatorDestroyedException: null
01:18:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:19 ... 7 common frames omitted
01:18:20 2024-10-26 01:18:20,133 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:18:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:20 Caused by: Ice.CommunicatorDestroyedException: null
01:18:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:20 ... 7 common frames omitted
01:18:20 2024-10-26 01:18:20,993 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:18:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:20 Caused by: Ice.CommunicatorDestroyedException: null
01:18:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:20 ... 7 common frames omitted
01:18:22 2024-10-26 01:18:22,026 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:18:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:18:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:18:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:18:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:18:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:18:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:18:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:18:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:18:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:18:22 Caused by: Ice.CommunicatorDestroyedException: null
01:18:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:18:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:18:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:18:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:18:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:18:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:18:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:18:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:18:22 ... 7 common frames omitted
01:19:48 2024-10-26 01:19:48,760 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:19:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:48 Caused by: Ice.CommunicatorDestroyedException: null
01:19:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:48 ... 7 common frames omitted
01:19:51 2024-10-26 01:19:51,131 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:19:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:51 Caused by: Ice.CommunicatorDestroyedException: null
01:19:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:51 ... 7 common frames omitted
01:19:53 2024-10-26 01:19:53,430 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:19:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:53 Caused by: Ice.CommunicatorDestroyedException: null
01:19:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:53 ... 7 common frames omitted
01:19:55 2024-10-26 01:19:55,645 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:19:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:55 Caused by: Ice.CommunicatorDestroyedException: null
01:19:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:55 ... 7 common frames omitted
01:19:58 2024-10-26 01:19:58,123 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:19:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:19:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:19:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:19:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:19:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:19:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:19:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:19:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:19:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:19:58 Caused by: Ice.CommunicatorDestroyedException: null
01:19:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:19:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:19:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:19:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:19:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:19:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:19:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:19:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:19:58 ... 7 common frames omitted
01:20:00 2024-10-26 01:20:00,038 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:20:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:00 Caused by: Ice.CommunicatorDestroyedException: null
01:20:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:00 ... 7 common frames omitted
01:20:01 2024-10-26 01:20:01,843 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:20:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:01 Caused by: Ice.CommunicatorDestroyedException: null
01:20:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:01 ... 7 common frames omitted
01:20:03 2024-10-26 01:20:03,586 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:20:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:20:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:20:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:20:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:20:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:20:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:20:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:20:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:20:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:20:03 Caused by: Ice.CommunicatorDestroyedException: null
01:20:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:20:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:20:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:20:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:20:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:20:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:20:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:20:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:20:03 ... 7 common frames omitted
01:23:46 2024-10-26 01:23:46,601 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:23:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:46 Caused by: Ice.CommunicatorDestroyedException: null
01:23:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:46 ... 7 common frames omitted
01:23:47 2024-10-26 01:23:47,729 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:23:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:47 Caused by: Ice.CommunicatorDestroyedException: null
01:23:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:47 ... 7 common frames omitted
01:23:49 2024-10-26 01:23:49,689 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:23:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:49 Caused by: Ice.CommunicatorDestroyedException: null
01:23:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:49 ... 7 common frames omitted
01:23:51 2024-10-26 01:23:51,344 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:23:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:51 Caused by: Ice.CommunicatorDestroyedException: null
01:23:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:51 ... 7 common frames omitted
01:23:51 2024-10-26 01:23:51,826 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:23:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:51 Caused by: Ice.CommunicatorDestroyedException: null
01:23:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:51 ... 7 common frames omitted
01:23:53 2024-10-26 01:23:53,587 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:23:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:53 Caused by: Ice.CommunicatorDestroyedException: null
01:23:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:53 ... 7 common frames omitted
01:23:55 2024-10-26 01:23:55,644 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:23:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:55 Caused by: Ice.CommunicatorDestroyedException: null
01:23:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:55 ... 7 common frames omitted
01:23:57 2024-10-26 01:23:57,616 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:23:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:23:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:23:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:23:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:23:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:23:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:23:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:23:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:23:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:23:57 Caused by: Ice.CommunicatorDestroyedException: null
01:23:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:23:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:23:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:23:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:23:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:23:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:23:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:23:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:23:57 ... 7 common frames omitted
01:24:00 2024-10-26 01:24:00,171 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:24:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:00 Caused by: Ice.CommunicatorDestroyedException: null
01:24:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:00 ... 7 common frames omitted
01:24:01 2024-10-26 01:24:01,642 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:24:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:01 Caused by: Ice.CommunicatorDestroyedException: null
01:24:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:01 ... 7 common frames omitted
01:24:03 2024-10-26 01:24:03,350 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:24:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:03 Caused by: Ice.CommunicatorDestroyedException: null
01:24:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:03 ... 7 common frames omitted
01:24:04 2024-10-26 01:24:04,977 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:24:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:04 Caused by: Ice.CommunicatorDestroyedException: null
01:24:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:04 ... 7 common frames omitted
01:24:53 2024-10-26 01:24:53,804 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:24:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:53 Caused by: Ice.CommunicatorDestroyedException: null
01:24:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:53 ... 7 common frames omitted
01:24:56 2024-10-26 01:24:56,448 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:24:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:56 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:56 Caused by: Ice.CommunicatorDestroyedException: null
01:24:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:56 ... 7 common frames omitted
01:24:58 2024-10-26 01:24:58,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:24:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:24:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:24:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:24:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:24:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:24:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:24:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:24:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:24:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:24:58 Caused by: Ice.CommunicatorDestroyedException: null
01:24:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:24:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:24:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:24:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:24:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:24:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:24:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:24:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:24:58 ... 7 common frames omitted
01:25:01 2024-10-26 01:25:01,192 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:25:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:01 Caused by: Ice.CommunicatorDestroyedException: null
01:25:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:01 ... 7 common frames omitted
01:25:03 2024-10-26 01:25:03,420 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:25:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:03 Caused by: Ice.CommunicatorDestroyedException: null
01:25:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:03 ... 7 common frames omitted
01:25:07 2024-10-26 01:25:07,858 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:25:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:07 Caused by: Ice.CommunicatorDestroyedException: null
01:25:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:07 ... 7 common frames omitted
01:25:11 2024-10-26 01:25:11,395 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:25:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:11 Caused by: Ice.CommunicatorDestroyedException: null
01:25:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:11 ... 7 common frames omitted
01:25:15 2024-10-26 01:25:15,184 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:25:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:15 Caused by: Ice.CommunicatorDestroyedException: null
01:25:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:15 ... 7 common frames omitted
01:25:19 2024-10-26 01:25:19,547 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:25:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:19 Caused by: Ice.CommunicatorDestroyedException: null
01:25:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:19 ... 7 common frames omitted
01:25:23 2024-10-26 01:25:23,381 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:25:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:23 Caused by: Ice.CommunicatorDestroyedException: null
01:25:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:23 ... 7 common frames omitted
01:25:26 2024-10-26 01:25:26,292 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:25:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:26 Caused by: Ice.CommunicatorDestroyedException: null
01:25:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:26 ... 7 common frames omitted
01:25:29 2024-10-26 01:25:29,170 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:25:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:29 Caused by: Ice.CommunicatorDestroyedException: null
01:25:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:29 ... 7 common frames omitted
01:25:31 2024-10-26 01:25:31,935 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:25:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:31 Caused by: Ice.CommunicatorDestroyedException: null
01:25:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:31 ... 7 common frames omitted
01:25:34 2024-10-26 01:25:34,798 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:25:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:34 Caused by: Ice.CommunicatorDestroyedException: null
01:25:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:34 ... 7 common frames omitted
01:25:37 2024-10-26 01:25:37,405 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:25:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:37 Caused by: Ice.CommunicatorDestroyedException: null
01:25:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:37 ... 7 common frames omitted
01:25:40 2024-10-26 01:25:40,121 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:25:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:40 Caused by: Ice.CommunicatorDestroyedException: null
01:25:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:40 ... 7 common frames omitted
01:25:43 2024-10-26 01:25:43,283 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:25:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:43 Caused by: Ice.CommunicatorDestroyedException: null
01:25:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:43 ... 7 common frames omitted
01:25:46 2024-10-26 01:25:46,113 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:25:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:46 Caused by: Ice.CommunicatorDestroyedException: null
01:25:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:46 ... 7 common frames omitted
01:25:48 2024-10-26 01:25:48,912 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:25:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:48 Caused by: Ice.CommunicatorDestroyedException: null
01:25:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:48 ... 7 common frames omitted
01:25:51 2024-10-26 01:25:51,732 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:25:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:51 Caused by: Ice.CommunicatorDestroyedException: null
01:25:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:51 ... 7 common frames omitted
01:25:54 2024-10-26 01:25:54,446 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:25:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:54 Caused by: Ice.CommunicatorDestroyedException: null
01:25:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:54 ... 7 common frames omitted
01:25:58 2024-10-26 01:25:58,341 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:25:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:25:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:25:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:25:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:25:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:25:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:25:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:25:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:25:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:25:58 Caused by: Ice.CommunicatorDestroyedException: null
01:25:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:25:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:25:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:25:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:25:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:25:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:25:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:25:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:25:58 ... 7 common frames omitted
01:26:02 2024-10-26 01:26:02,418 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:26:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:02 Caused by: Ice.CommunicatorDestroyedException: null
01:26:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:02 ... 7 common frames omitted
01:26:06 2024-10-26 01:26:06,613 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:26:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:06 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:06 Caused by: Ice.CommunicatorDestroyedException: null
01:26:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:06 ... 7 common frames omitted
01:26:10 2024-10-26 01:26:10,679 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:26:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:10 Caused by: Ice.CommunicatorDestroyedException: null
01:26:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:10 ... 7 common frames omitted
01:26:13 2024-10-26 01:26:13,354 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:26:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:13 Caused by: Ice.CommunicatorDestroyedException: null
01:26:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:13 ... 7 common frames omitted
01:26:16 2024-10-26 01:26:16,072 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:26:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:16 Caused by: Ice.CommunicatorDestroyedException: null
01:26:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:16 ... 7 common frames omitted
01:26:18 2024-10-26 01:26:18,599 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:26:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:18 Caused by: Ice.CommunicatorDestroyedException: null
01:26:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:18 ... 7 common frames omitted
01:26:21 2024-10-26 01:26:21,091 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:26:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:21 Caused by: Ice.CommunicatorDestroyedException: null
01:26:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:21 ... 7 common frames omitted
01:26:24 2024-10-26 01:26:24,213 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:26:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:24 Caused by: Ice.CommunicatorDestroyedException: null
01:26:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:24 ... 7 common frames omitted
01:26:27 2024-10-26 01:26:27,002 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:26:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:27 Caused by: Ice.CommunicatorDestroyedException: null
01:26:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:27 ... 7 common frames omitted
01:26:29 2024-10-26 01:26:29,751 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:26:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:29 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:29 Caused by: Ice.CommunicatorDestroyedException: null
01:26:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:29 ... 7 common frames omitted
01:26:32 2024-10-26 01:26:32,227 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:26:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:32 Caused by: Ice.CommunicatorDestroyedException: null
01:26:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:32 ... 7 common frames omitted
01:26:35 2024-10-26 01:26:35,176 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:26:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:35 Caused by: Ice.CommunicatorDestroyedException: null
01:26:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:35 ... 7 common frames omitted
01:26:37 2024-10-26 01:26:37,924 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:26:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:37 Caused by: Ice.CommunicatorDestroyedException: null
01:26:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:37 ... 7 common frames omitted
01:26:40 2024-10-26 01:26:40,845 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:26:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:40 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:40 Caused by: Ice.CommunicatorDestroyedException: null
01:26:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:40 ... 7 common frames omitted
01:26:43 2024-10-26 01:26:43,873 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:26:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:43 Caused by: Ice.CommunicatorDestroyedException: null
01:26:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:43 ... 7 common frames omitted
01:26:48 2024-10-26 01:26:48,737 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:26:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:48 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:48 Caused by: Ice.CommunicatorDestroyedException: null
01:26:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:48 ... 7 common frames omitted
01:26:53 2024-10-26 01:26:53,347 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:26:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:53 Caused by: Ice.CommunicatorDestroyedException: null
01:26:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:53 ... 7 common frames omitted
01:26:57 2024-10-26 01:26:57,748 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:26:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:26:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:26:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:26:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:26:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:26:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:26:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:26:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:26:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:26:57 Caused by: Ice.CommunicatorDestroyedException: null
01:26:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:26:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:26:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:26:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:26:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:26:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:26:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:26:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:26:57 ... 7 common frames omitted
01:27:01 2024-10-26 01:27:01,768 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:27:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:01 Caused by: Ice.CommunicatorDestroyedException: null
01:27:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:01 ... 7 common frames omitted
01:27:04 2024-10-26 01:27:04,370 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:27:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:04 Caused by: Ice.CommunicatorDestroyedException: null
01:27:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:04 ... 7 common frames omitted
01:27:07 2024-10-26 01:27:07,109 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:27:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:07 Caused by: Ice.CommunicatorDestroyedException: null
01:27:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:07 ... 7 common frames omitted
01:27:09 2024-10-26 01:27:09,662 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:27:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:09 Caused by: Ice.CommunicatorDestroyedException: null
01:27:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:09 ... 7 common frames omitted
01:27:12 2024-10-26 01:27:12,316 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:27:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:12 Caused by: Ice.CommunicatorDestroyedException: null
01:27:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:12 ... 7 common frames omitted
01:27:15 2024-10-26 01:27:15,069 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:27:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:15 Caused by: Ice.CommunicatorDestroyedException: null
01:27:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:15 ... 7 common frames omitted
01:27:18 2024-10-26 01:27:18,029 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:27:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:18 Caused by: Ice.CommunicatorDestroyedException: null
01:27:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:18 ... 7 common frames omitted
01:27:20 2024-10-26 01:27:20,922 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:27:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:20 Caused by: Ice.CommunicatorDestroyedException: null
01:27:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:20 ... 7 common frames omitted
01:27:54 2024-10-26 01:27:54,961 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:27:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:54 Caused by: Ice.CommunicatorDestroyedException: null
01:27:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:54 ... 7 common frames omitted
01:27:59 2024-10-26 01:27:59,008 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:27:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:27:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:27:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:27:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:27:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:27:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:27:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:27:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:27:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:27:59 Caused by: Ice.CommunicatorDestroyedException: null
01:27:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:27:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:27:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:27:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:27:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:27:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:27:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:27:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:27:59 ... 7 common frames omitted
01:28:03 2024-10-26 01:28:03,257 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:03 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:03 Caused by: Ice.CommunicatorDestroyedException: null
01:28:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:03 ... 7 common frames omitted
01:28:07 2024-10-26 01:28:07,325 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:07 Caused by: Ice.CommunicatorDestroyedException: null
01:28:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:07 ... 7 common frames omitted
01:28:11 2024-10-26 01:28:11,158 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:11 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:11 Caused by: Ice.CommunicatorDestroyedException: null
01:28:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:11 ... 7 common frames omitted
01:28:15 2024-10-26 01:28:15,060 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:15 Caused by: Ice.CommunicatorDestroyedException: null
01:28:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:15 ... 7 common frames omitted
01:28:19 2024-10-26 01:28:19,017 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:19 Caused by: Ice.CommunicatorDestroyedException: null
01:28:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:19 ... 7 common frames omitted
01:28:23 2024-10-26 01:28:23,323 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:23 Caused by: Ice.CommunicatorDestroyedException: null
01:28:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:23 ... 7 common frames omitted
01:28:27 2024-10-26 01:28:27,442 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:28:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:27 Caused by: Ice.CommunicatorDestroyedException: null
01:28:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:27 ... 7 common frames omitted
01:28:30 2024-10-26 01:28:30,633 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:28:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:30 Caused by: Ice.CommunicatorDestroyedException: null
01:28:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:30 ... 7 common frames omitted
01:28:32 2024-10-26 01:28:32,884 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:28:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:32 Caused by: Ice.CommunicatorDestroyedException: null
01:28:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:32 ... 7 common frames omitted
01:28:35 2024-10-26 01:28:35,261 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:28:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:35 Caused by: Ice.CommunicatorDestroyedException: null
01:28:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:35 ... 7 common frames omitted
01:28:38 2024-10-26 01:28:38,932 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:28:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:38 Caused by: Ice.CommunicatorDestroyedException: null
01:28:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:38 ... 7 common frames omitted
01:28:42 2024-10-26 01:28:42,025 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:28:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:42 Caused by: Ice.CommunicatorDestroyedException: null
01:28:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:42 ... 7 common frames omitted
01:28:44 2024-10-26 01:28:44,983 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:28:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:44 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:44 Caused by: Ice.CommunicatorDestroyedException: null
01:28:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:44 ... 7 common frames omitted
01:28:47 2024-10-26 01:28:47,882 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:28:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:47 Caused by: Ice.CommunicatorDestroyedException: null
01:28:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:47 ... 7 common frames omitted
01:28:50 2024-10-26 01:28:50,813 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:28:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:50 Caused by: Ice.CommunicatorDestroyedException: null
01:28:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:50 ... 7 common frames omitted
01:28:55 2024-10-26 01:28:55,598 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:28:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:28:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:28:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:28:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:28:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:28:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:28:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:28:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:28:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:28:55 Caused by: Ice.CommunicatorDestroyedException: null
01:28:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:28:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:28:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:28:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:28:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:28:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:28:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:28:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:28:55 ... 7 common frames omitted
01:29:00 2024-10-26 01:29:00,091 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:29:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:00 Caused by: Ice.CommunicatorDestroyedException: null
01:29:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:00 ... 7 common frames omitted
01:29:04 2024-10-26 01:29:04,560 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:29:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:04 Caused by: Ice.CommunicatorDestroyedException: null
01:29:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:04 ... 7 common frames omitted
01:29:09 2024-10-26 01:29:09,129 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:29:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:09 Caused by: Ice.CommunicatorDestroyedException: null
01:29:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:09 ... 7 common frames omitted
01:29:13 2024-10-26 01:29:13,636 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:29:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:13 Caused by: Ice.CommunicatorDestroyedException: null
01:29:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:13 ... 7 common frames omitted
01:29:18 2024-10-26 01:29:18,398 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:29:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:18 Caused by: Ice.CommunicatorDestroyedException: null
01:29:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:18 ... 7 common frames omitted
01:29:22 2024-10-26 01:29:22,900 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:29:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:29:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:29:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:29:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:29:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:29:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:29:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:29:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:29:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:29:22 Caused by: Ice.CommunicatorDestroyedException: null
01:29:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:29:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:29:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:29:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:29:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:29:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:29:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:29:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:29:22 ... 7 common frames omitted
01:30:57 2024-10-26 01:30:57,238 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:30:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:30:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:30:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:30:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:30:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:30:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:30:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:30:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:30:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:30:57 Caused by: Ice.CommunicatorDestroyedException: null
01:30:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:30:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:30:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:30:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:30:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:30:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:30:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:30:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:30:57 ... 7 common frames omitted
01:31:01 2024-10-26 01:31:01,213 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:31:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:01 Caused by: Ice.CommunicatorDestroyedException: null
01:31:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:01 ... 7 common frames omitted
01:31:04 2024-10-26 01:31:04,874 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:31:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:04 Caused by: Ice.CommunicatorDestroyedException: null
01:31:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:04 ... 7 common frames omitted
01:31:08 2024-10-26 01:31:08,704 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:31:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:08 Caused by: Ice.CommunicatorDestroyedException: null
01:31:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:08 ... 7 common frames omitted
01:31:12 2024-10-26 01:31:12,125 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:31:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:12 Caused by: Ice.CommunicatorDestroyedException: null
01:31:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:12 ... 7 common frames omitted
01:31:17 2024-10-26 01:31:17,684 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:31:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:17 Caused by: Ice.CommunicatorDestroyedException: null
01:31:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:17 ... 7 common frames omitted
01:31:23 2024-10-26 01:31:23,340 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:31:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:23 Caused by: Ice.CommunicatorDestroyedException: null
01:31:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:23 ... 7 common frames omitted
01:31:28 2024-10-26 01:31:28,453 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:31:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:28 Caused by: Ice.CommunicatorDestroyedException: null
01:31:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:28 ... 7 common frames omitted
01:31:33 2024-10-26 01:31:33,964 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:31:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:33 Caused by: Ice.CommunicatorDestroyedException: null
01:31:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:33 ... 7 common frames omitted
01:31:39 2024-10-26 01:31:39,455 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:31:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:39 Caused by: Ice.CommunicatorDestroyedException: null
01:31:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:39 ... 7 common frames omitted
01:31:45 2024-10-26 01:31:45,051 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:31:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:45 Caused by: Ice.CommunicatorDestroyedException: null
01:31:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:45 ... 7 common frames omitted
01:31:50 2024-10-26 01:31:50,055 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:31:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:50 Caused by: Ice.CommunicatorDestroyedException: null
01:31:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:50 ... 7 common frames omitted
01:31:54 2024-10-26 01:31:54,984 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:31:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:31:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:31:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:31:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:31:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:31:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:31:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:31:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:31:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:31:54 Caused by: Ice.CommunicatorDestroyedException: null
01:31:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:31:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:31:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:31:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:31:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:31:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:31:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:31:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:31:54 ... 7 common frames omitted
01:32:01 2024-10-26 01:32:01,857 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:01 Caused by: Ice.CommunicatorDestroyedException: null
01:32:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:01 ... 7 common frames omitted
01:32:07 2024-10-26 01:32:07,956 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:07 Caused by: Ice.CommunicatorDestroyedException: null
01:32:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:07 ... 7 common frames omitted
01:32:13 2024-10-26 01:32:13,758 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:13 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:13 Caused by: Ice.CommunicatorDestroyedException: null
01:32:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:13 ... 7 common frames omitted
01:32:19 2024-10-26 01:32:19,903 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:19 Caused by: Ice.CommunicatorDestroyedException: null
01:32:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:19 ... 7 common frames omitted
01:32:21 2024-10-26 01:32:21,544 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:21 Caused by: Ice.CommunicatorDestroyedException: null
01:32:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:21 ... 7 common frames omitted
01:32:22 2024-10-26 01:32:22,969 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:22 Caused by: Ice.CommunicatorDestroyedException: null
01:32:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:22 ... 7 common frames omitted
01:32:24 2024-10-26 01:32:24,334 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:24 Caused by: Ice.CommunicatorDestroyedException: null
01:32:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:24 ... 7 common frames omitted
01:32:25 2024-10-26 01:32:25,722 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:25 Caused by: Ice.CommunicatorDestroyedException: null
01:32:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:25 ... 7 common frames omitted
01:32:27 2024-10-26 01:32:27,194 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:27 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:27 Caused by: Ice.CommunicatorDestroyedException: null
01:32:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:27 ... 7 common frames omitted
01:32:28 2024-10-26 01:32:28,637 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:28 Caused by: Ice.CommunicatorDestroyedException: null
01:32:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:28 ... 7 common frames omitted
01:32:30 2024-10-26 01:32:30,013 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:30 Caused by: Ice.CommunicatorDestroyedException: null
01:32:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:30 ... 7 common frames omitted
01:32:31 2024-10-26 01:32:31,500 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:31 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:31 Caused by: Ice.CommunicatorDestroyedException: null
01:32:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:31 ... 7 common frames omitted
01:32:32 2024-10-26 01:32:32,954 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:32 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:32 Caused by: Ice.CommunicatorDestroyedException: null
01:32:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:32 ... 7 common frames omitted
01:32:34 2024-10-26 01:32:34,428 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:34 Caused by: Ice.CommunicatorDestroyedException: null
01:32:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:34 ... 7 common frames omitted
01:32:35 2024-10-26 01:32:35,892 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:35 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:35 Caused by: Ice.CommunicatorDestroyedException: null
01:32:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:35 ... 7 common frames omitted
01:32:37 2024-10-26 01:32:37,246 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:37 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:37 Caused by: Ice.CommunicatorDestroyedException: null
01:32:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:37 ... 7 common frames omitted
01:32:38 2024-10-26 01:32:38,501 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:38 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:38 Caused by: Ice.CommunicatorDestroyedException: null
01:32:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:38 ... 7 common frames omitted
01:32:39 2024-10-26 01:32:39,849 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:39 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:39 Caused by: Ice.CommunicatorDestroyedException: null
01:32:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:39 ... 7 common frames omitted
01:32:41 2024-10-26 01:32:41,298 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:41 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:41 Caused by: Ice.CommunicatorDestroyedException: null
01:32:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:41 ... 7 common frames omitted
01:32:42 2024-10-26 01:32:42,520 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:42 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:42 Caused by: Ice.CommunicatorDestroyedException: null
01:32:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:42 ... 7 common frames omitted
01:32:43 2024-10-26 01:32:43,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:43 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:43 Caused by: Ice.CommunicatorDestroyedException: null
01:32:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:43 ... 7 common frames omitted
01:32:45 2024-10-26 01:32:45,181 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:45 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:45 Caused by: Ice.CommunicatorDestroyedException: null
01:32:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:45 ... 7 common frames omitted
01:32:46 2024-10-26 01:32:46,492 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:32:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:46 Caused by: Ice.CommunicatorDestroyedException: null
01:32:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:46 ... 7 common frames omitted
01:32:47 2024-10-26 01:32:47,818 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:32:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:47 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:47 Caused by: Ice.CommunicatorDestroyedException: null
01:32:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:47 ... 7 common frames omitted
01:32:49 2024-10-26 01:32:49,183 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:32:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:49 Caused by: Ice.CommunicatorDestroyedException: null
01:32:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:49 ... 7 common frames omitted
01:32:50 2024-10-26 01:32:50,542 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:32:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:50 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:50 Caused by: Ice.CommunicatorDestroyedException: null
01:32:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:50 ... 7 common frames omitted
01:32:51 2024-10-26 01:32:51,852 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:32:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:51 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:51 Caused by: Ice.CommunicatorDestroyedException: null
01:32:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:51 ... 7 common frames omitted
01:32:53 2024-10-26 01:32:53,180 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:32:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:53 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:53 Caused by: Ice.CommunicatorDestroyedException: null
01:32:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:53 ... 7 common frames omitted
01:32:54 2024-10-26 01:32:54,481 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:32:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:54 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:54 Caused by: Ice.CommunicatorDestroyedException: null
01:32:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:54 ... 7 common frames omitted
01:32:55 2024-10-26 01:32:55,887 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:32:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:55 Caused by: Ice.CommunicatorDestroyedException: null
01:32:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:55 ... 7 common frames omitted
01:32:57 2024-10-26 01:32:57,244 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:32:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:57 Caused by: Ice.CommunicatorDestroyedException: null
01:32:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:57 ... 7 common frames omitted
01:32:58 2024-10-26 01:32:58,598 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:32:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:32:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:32:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:32:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:32:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:32:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:32:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:32:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:32:58 at java.base/java.lang.Thread.run(Thread.java:829)
01:32:58 Caused by: Ice.CommunicatorDestroyedException: null
01:32:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:32:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:32:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:32:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:32:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:32:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:32:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:32:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:32:58 ... 7 common frames omitted
01:33:00 2024-10-26 01:33:00,019 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:00 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:00 Caused by: Ice.CommunicatorDestroyedException: null
01:33:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:00 ... 7 common frames omitted
01:33:01 2024-10-26 01:33:01,487 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:01 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:01 Caused by: Ice.CommunicatorDestroyedException: null
01:33:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:01 ... 7 common frames omitted
01:33:02 2024-10-26 01:33:02,850 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:33:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:02 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:02 Caused by: Ice.CommunicatorDestroyedException: null
01:33:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:02 ... 7 common frames omitted
01:33:04 2024-10-26 01:33:04,179 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:33:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:04 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:04 Caused by: Ice.CommunicatorDestroyedException: null
01:33:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:04 ... 7 common frames omitted
01:33:07 2024-10-26 01:33:07,204 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:33:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:07 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:07 Caused by: Ice.CommunicatorDestroyedException: null
01:33:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:07 ... 7 common frames omitted
01:33:09 2024-10-26 01:33:09,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:33:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:09 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:09 Caused by: Ice.CommunicatorDestroyedException: null
01:33:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:09 ... 7 common frames omitted
01:33:12 2024-10-26 01:33:12,845 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:33:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:12 Caused by: Ice.CommunicatorDestroyedException: null
01:33:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:12 ... 7 common frames omitted
01:33:15 2024-10-26 01:33:15,743 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:33:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:15 Caused by: Ice.CommunicatorDestroyedException: null
01:33:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:15 ... 7 common frames omitted
01:33:21 2024-10-26 01:33:21,390 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:33:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:21 Caused by: Ice.CommunicatorDestroyedException: null
01:33:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:21 ... 7 common frames omitted
01:33:25 2024-10-26 01:33:25,925 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:33:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:25 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:25 Caused by: Ice.CommunicatorDestroyedException: null
01:33:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:25 ... 7 common frames omitted
01:33:30 2024-10-26 01:33:30,581 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:33:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:30 Caused by: Ice.CommunicatorDestroyedException: null
01:33:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:30 ... 7 common frames omitted
01:33:46 2024-10-26 01:33:46,614 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:33:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:46 Caused by: Ice.CommunicatorDestroyedException: null
01:33:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:46 ... 7 common frames omitted
01:33:49 2024-10-26 01:33:49,607 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:33:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:49 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:49 Caused by: Ice.CommunicatorDestroyedException: null
01:33:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:49 ... 7 common frames omitted
01:33:52 2024-10-26 01:33:52,360 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:33:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:52 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:52 Caused by: Ice.CommunicatorDestroyedException: null
01:33:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:52 ... 7 common frames omitted
01:33:55 2024-10-26 01:33:55,055 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:33:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:33:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:33:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:33:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:33:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:33:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:33:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:33:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:33:55 at java.base/java.lang.Thread.run(Thread.java:829)
01:33:55 Caused by: Ice.CommunicatorDestroyedException: null
01:33:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:33:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:33:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:33:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:33:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:33:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:33:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:33:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:33:55 ... 7 common frames omitted
01:38:15 2024-10-26 01:38:15,122 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:38:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:15 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:15 Caused by: Ice.CommunicatorDestroyedException: null
01:38:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:15 ... 7 common frames omitted
01:38:16 2024-10-26 01:38:16,881 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:38:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:16 Caused by: Ice.CommunicatorDestroyedException: null
01:38:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:16 ... 7 common frames omitted
01:38:17 2024-10-26 01:38:17,549 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
01:38:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:17 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:17 Caused by: Ice.CommunicatorDestroyedException: null
01:38:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:17 ... 7 common frames omitted
01:38:18 2024-10-26 01:38:18,188 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:38:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:18 Caused by: Ice.CommunicatorDestroyedException: null
01:38:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:18 ... 7 common frames omitted
01:38:18 2024-10-26 01:38:18,719 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:38:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:18 Caused by: Ice.CommunicatorDestroyedException: null
01:38:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:18 ... 7 common frames omitted
01:38:19 2024-10-26 01:38:19,890 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:38:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:19 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:19 Caused by: Ice.CommunicatorDestroyedException: null
01:38:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:19 ... 7 common frames omitted
01:38:20 2024-10-26 01:38:20,588 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:38:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:20 Caused by: Ice.CommunicatorDestroyedException: null
01:38:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:20 ... 7 common frames omitted
01:38:21 2024-10-26 01:38:21,774 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:38:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:21 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:21 Caused by: Ice.CommunicatorDestroyedException: null
01:38:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:21 ... 7 common frames omitted
01:38:22 2024-10-26 01:38:22,650 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:38:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:22 Caused by: Ice.CommunicatorDestroyedException: null
01:38:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:22 ... 7 common frames omitted
01:38:23 2024-10-26 01:38:23,183 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:38:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:23 Caused by: Ice.CommunicatorDestroyedException: null
01:38:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:23 ... 7 common frames omitted
01:38:23 2024-10-26 01:38:23,702 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
01:38:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:23 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:23 Caused by: Ice.CommunicatorDestroyedException: null
01:38:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:23 ... 7 common frames omitted
01:38:26 2024-10-26 01:38:26,022 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:38:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:38:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:38:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:38:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:38:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:38:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:38:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:38:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:38:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:38:26 Caused by: Ice.CommunicatorDestroyedException: null
01:38:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:38:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:38:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:38:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:38:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:38:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:38:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:38:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:38:26 ... 7 common frames omitted
01:40:36 2024-10-26 01:40:36,541 ERROR [ ome.system.UpgradeCheck] (Response-1) Error reading from url: http://upgrade.openmicroscopy.org.uk?version=test;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
01:41:30 2024-10-26 01:41:30,526 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
01:41:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:30 Caused by: Ice.CommunicatorDestroyedException: null
01:41:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:30 ... 7 common frames omitted
01:41:36 2024-10-26 01:41:36,873 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:41:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:36 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:36 Caused by: Ice.CommunicatorDestroyedException: null
01:41:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:36 ... 7 common frames omitted
01:41:46 2024-10-26 01:41:46,262 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
01:41:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:41:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:41:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:41:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:41:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:41:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:41:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:41:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:41:46 at java.base/java.lang.Thread.run(Thread.java:829)
01:41:46 Caused by: Ice.CommunicatorDestroyedException: null
01:41:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:41:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:41:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:41:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:41:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:41:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:41:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:41:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:41:46 ... 7 common frames omitted
01:42:10 2024-10-26 01:42:10,204 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:10 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:10 Caused by: Ice.CommunicatorDestroyedException: null
01:42:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:10 ... 7 common frames omitted
01:42:12 2024-10-26 01:42:12,428 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:12 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:12 Caused by: Ice.CommunicatorDestroyedException: null
01:42:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:12 ... 7 common frames omitted
01:42:14 2024-10-26 01:42:14,412 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:14 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:14 Caused by: Ice.CommunicatorDestroyedException: null
01:42:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:14 ... 7 common frames omitted
01:42:16 2024-10-26 01:42:16,498 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:42:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:16 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:16 Caused by: Ice.CommunicatorDestroyedException: null
01:42:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:16 ... 7 common frames omitted
01:42:18 2024-10-26 01:42:18,319 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:42:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:18 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:18 Caused by: Ice.CommunicatorDestroyedException: null
01:42:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:18 ... 7 common frames omitted
01:42:20 2024-10-26 01:42:20,554 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:20 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:20 Caused by: Ice.CommunicatorDestroyedException: null
01:42:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:20 ... 7 common frames omitted
01:42:22 2024-10-26 01:42:22,389 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:22 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:22 Caused by: Ice.CommunicatorDestroyedException: null
01:42:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:22 ... 7 common frames omitted
01:42:24 2024-10-26 01:42:24,427 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:24 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:24 Caused by: Ice.CommunicatorDestroyedException: null
01:42:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:24 ... 7 common frames omitted
01:42:26 2024-10-26 01:42:26,348 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:42:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:26 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:26 Caused by: Ice.CommunicatorDestroyedException: null
01:42:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:26 ... 7 common frames omitted
01:42:28 2024-10-26 01:42:28,725 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:42:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:28 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:28 Caused by: Ice.CommunicatorDestroyedException: null
01:42:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:28 ... 7 common frames omitted
01:42:30 2024-10-26 01:42:30,988 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
01:42:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:30 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:30 Caused by: Ice.CommunicatorDestroyedException: null
01:42:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:30 ... 7 common frames omitted
01:42:33 2024-10-26 01:42:33,174 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
01:42:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:33 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:33 Caused by: Ice.CommunicatorDestroyedException: null
01:42:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:33 ... 7 common frames omitted
01:42:34 2024-10-26 01:42:34,643 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
01:42:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:42:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:42:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:42:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:42:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:42:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:42:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:42:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:42:34 at java.base/java.lang.Thread.run(Thread.java:829)
01:42:34 Caused by: Ice.CommunicatorDestroyedException: null
01:42:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:42:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:42:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:42:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:42:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:42:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:42:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:42:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:42:34 ... 7 common frames omitted
01:49:08 2024-10-26 01:49:08,099 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
01:49:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:08 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:08 Caused by: Ice.CommunicatorDestroyedException: null
01:49:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:08 ... 7 common frames omitted
01:49:57 2024-10-26 01:49:57,378 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
01:49:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:57 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:57 Caused by: Ice.CommunicatorDestroyedException: null
01:49:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:57 ... 7 common frames omitted
01:49:59 2024-10-26 01:49:59,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
01:49:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
01:49:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
01:49:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
01:49:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
01:49:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
01:49:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
01:49:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
01:49:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
01:49:59 at java.base/java.lang.Thread.run(Thread.java:829)
01:49:59 Caused by: Ice.CommunicatorDestroyedException: null
01:49:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
01:49:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
01:49:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
01:49:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
01:49:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
01:49:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
01:49:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
01:49:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
01:49:59 ... 7 common frames omitted
02:04:56 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:04:56 reason = "Password check failed for 'fb020624-93e5-485b-888c-63208f7dc2b7': [id=3014]"
02:04:56 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:04:56 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:04:56 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:04:56 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:04:56 at java.base/java.lang.Class.newInstance(Class.java:584)
02:04:56 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:04:56 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:04:56 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:04:56 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:04:56 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:04:56 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:04:56 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:04:56 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:04:56 at omero.client.createSession(client.java:776)
02:04:56 at omero.client.createSession(client.java:719)
02:04:56 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:04:56 at omero.gateway.Gateway.connect(Gateway.java:297)
02:04:56 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:04:56 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:56 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:56 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:56 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:56 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:56 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:56 Could not login with command line arguments.Glacier2.PermissionDeniedException
02:04:56 reason = "Password check failed for 'fb020624-93e5-485b-888c-63208f7dc2b7': [id=3014]"
02:04:56 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
02:04:56 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
02:04:56 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
02:04:56 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
02:04:56 at java.base/java.lang.Class.newInstance(Class.java:584)
02:04:56 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
02:04:56 at IceInternal.BasicStream.access$300(BasicStream.java:14)
02:04:56 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
02:04:56 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
02:04:56 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
02:04:56 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
02:04:56 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
02:04:56 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
02:04:56 at omero.client.createSession(client.java:776)
02:04:56 at omero.client.createSession(client.java:719)
02:04:56 at omero.gateway.Gateway.createSession(Gateway.java:1045)
02:04:56 at omero.gateway.Gateway.connect(Gateway.java:297)
02:04:56 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
02:04:56 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:04:56 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:04:56 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:04:56 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:04:56 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:04:56 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:04:56 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:04:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:04:56 Exception in thread "TestNG-method=testLoginFallback-1"
02:05:10 Support for FileAnnotationData is deprecated. Use OriginalFile instead.
02:05:12 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:05:12 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:05:12 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:05:12 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:05:12 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:05:12 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:05:12 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:05:12 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:05:12 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:05:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:12 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
02:05:12 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
02:05:12 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
02:05:12 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:05:12 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:05:12 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:05:12 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:05:12 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:05:12 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:05:12 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:05:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:12 Exception in thread "TestNG-method=testInvalidParams-1"
02:05:13 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:05:13 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:05:13 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:05:13 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:05:13 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:05:13 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:05:13 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:05:13 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:05:13 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:05:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:13 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:13 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
02:05:13 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
02:05:13 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
02:05:13 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
02:05:13 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
02:05:13 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
02:05:13 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
02:05:13 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
02:05:13 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
02:05:13 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
02:05:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:13 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:13 Exception in thread "TestNG-method=testInvalidParams-1"
02:05:13 No concrete type specified for column 'column1', using Object.toString()
02:05:14 Request rows 1174 to 1195; columns [3, 1, 0, 8, 2, 9]
02:05:15 Request rows 380 to 422; columns [0, 8, 4]
02:05:16 Request rows 839 to 900; columns [5, 3, 0, 6, 8, 1, 2]
02:05:17 Request rows 831 to 898; columns [0]
02:05:18 Request rows 1725 to 1795; columns [4, 1, 7]
02:05:23 2024-10-26 02:05:23,466 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:05:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:05:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:05:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:05:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:05:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:05:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:05:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:05:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:05:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:05:23 Caused by: Ice.CommunicatorDestroyedException: null
02:05:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:05:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:05:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:05:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:05:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:05:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:05:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:05:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:05:23 ... 7 common frames omitted
02:06:56 2024-10-26 02:06:56,504 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:06:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:06:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:06:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:06:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:06:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:06:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:06:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:06:56 Caused by: Ice.CommunicatorDestroyedException: null
02:06:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:06:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:06:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:06:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:06:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:06:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:06:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:06:56 ... 7 common frames omitted
02:07:01 2024-10-26 02:07:01,211 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:01 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:01 Caused by: Ice.CommunicatorDestroyedException: null
02:07:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:01 ... 7 common frames omitted
02:07:05 2024-10-26 02:07:05,577 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:05 Caused by: Ice.CommunicatorDestroyedException: null
02:07:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:05 ... 7 common frames omitted
02:07:09 2024-10-26 02:07:09,976 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:09 Caused by: Ice.CommunicatorDestroyedException: null
02:07:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:09 ... 7 common frames omitted
02:07:13 2024-10-26 02:07:13,637 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:13 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:13 Caused by: Ice.CommunicatorDestroyedException: null
02:07:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:13 ... 7 common frames omitted
02:07:17 2024-10-26 02:07:17,211 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:17 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:17 Caused by: Ice.CommunicatorDestroyedException: null
02:07:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:17 ... 7 common frames omitted
02:07:20 2024-10-26 02:07:20,628 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:20 Caused by: Ice.CommunicatorDestroyedException: null
02:07:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:20 ... 7 common frames omitted
02:07:24 2024-10-26 02:07:24,119 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:24 Caused by: Ice.CommunicatorDestroyedException: null
02:07:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:24 ... 7 common frames omitted
02:07:27 2024-10-26 02:07:27,811 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:27 Caused by: Ice.CommunicatorDestroyedException: null
02:07:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:27 ... 7 common frames omitted
02:07:30 2024-10-26 02:07:30,062 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:30 Caused by: Ice.CommunicatorDestroyedException: null
02:07:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:30 ... 7 common frames omitted
02:07:31 2024-10-26 02:07:31,938 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:31 Caused by: Ice.CommunicatorDestroyedException: null
02:07:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:31 ... 7 common frames omitted
02:07:33 2024-10-26 02:07:33,912 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:33 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:33 Caused by: Ice.CommunicatorDestroyedException: null
02:07:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:33 ... 7 common frames omitted
02:07:36 2024-10-26 02:07:36,559 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:36 Caused by: Ice.CommunicatorDestroyedException: null
02:07:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:36 ... 7 common frames omitted
02:07:39 2024-10-26 02:07:39,820 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:39 Caused by: Ice.CommunicatorDestroyedException: null
02:07:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:39 ... 7 common frames omitted
02:07:43 2024-10-26 02:07:43,209 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:43 Caused by: Ice.CommunicatorDestroyedException: null
02:07:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:43 ... 7 common frames omitted
02:07:46 2024-10-26 02:07:46,648 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:46 Caused by: Ice.CommunicatorDestroyedException: null
02:07:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:46 ... 7 common frames omitted
02:07:48 2024-10-26 02:07:48,998 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:07:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:48 Caused by: Ice.CommunicatorDestroyedException: null
02:07:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:48 ... 7 common frames omitted
02:07:51 2024-10-26 02:07:51,357 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:07:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:51 Caused by: Ice.CommunicatorDestroyedException: null
02:07:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:51 ... 7 common frames omitted
02:07:53 2024-10-26 02:07:53,813 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:07:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:53 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:53 Caused by: Ice.CommunicatorDestroyedException: null
02:07:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:53 ... 7 common frames omitted
02:07:56 2024-10-26 02:07:56,167 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:07:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:56 Caused by: Ice.CommunicatorDestroyedException: null
02:07:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:56 ... 7 common frames omitted
02:07:58 2024-10-26 02:07:58,741 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:07:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:07:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:07:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:07:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:07:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:07:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:07:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:07:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:07:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:07:58 Caused by: Ice.CommunicatorDestroyedException: null
02:07:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:07:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:07:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:07:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:07:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:07:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:07:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:07:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:07:58 ... 7 common frames omitted
02:08:00 2024-10-26 02:08:00,404 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:00 Caused by: Ice.CommunicatorDestroyedException: null
02:08:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:00 ... 7 common frames omitted
02:08:02 2024-10-26 02:08:02,306 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:02 Caused by: Ice.CommunicatorDestroyedException: null
02:08:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:02 ... 7 common frames omitted
02:08:03 2024-10-26 02:08:03,782 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:03 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:03 Caused by: Ice.CommunicatorDestroyedException: null
02:08:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:03 ... 7 common frames omitted
02:08:06 2024-10-26 02:08:06,355 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:06 Caused by: Ice.CommunicatorDestroyedException: null
02:08:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:06 ... 7 common frames omitted
02:08:10 2024-10-26 02:08:10,730 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:10 Caused by: Ice.CommunicatorDestroyedException: null
02:08:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:10 ... 7 common frames omitted
02:08:15 2024-10-26 02:08:15,472 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:15 Caused by: Ice.CommunicatorDestroyedException: null
02:08:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:15 ... 7 common frames omitted
02:08:20 2024-10-26 02:08:20,063 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:20 Caused by: Ice.CommunicatorDestroyedException: null
02:08:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:20 ... 7 common frames omitted
02:08:24 2024-10-26 02:08:24,337 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:24 Caused by: Ice.CommunicatorDestroyedException: null
02:08:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:24 ... 7 common frames omitted
02:08:26 2024-10-26 02:08:26,778 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:26 Caused by: Ice.CommunicatorDestroyedException: null
02:08:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:26 ... 7 common frames omitted
02:08:28 2024-10-26 02:08:28,555 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:28 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:28 Caused by: Ice.CommunicatorDestroyedException: null
02:08:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:28 ... 7 common frames omitted
02:08:32 2024-10-26 02:08:32,344 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:32 Caused by: Ice.CommunicatorDestroyedException: null
02:08:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:32 ... 7 common frames omitted
02:08:36 2024-10-26 02:08:36,115 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:36 Caused by: Ice.CommunicatorDestroyedException: null
02:08:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:36 ... 7 common frames omitted
02:08:39 2024-10-26 02:08:39,615 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:08:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:39 Caused by: Ice.CommunicatorDestroyedException: null
02:08:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:39 ... 7 common frames omitted
02:08:43 2024-10-26 02:08:43,296 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:08:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:43 Caused by: Ice.CommunicatorDestroyedException: null
02:08:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:43 ... 7 common frames omitted
02:08:45 2024-10-26 02:08:45,178 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:08:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:45 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:45 Caused by: Ice.CommunicatorDestroyedException: null
02:08:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:45 ... 7 common frames omitted
02:08:46 2024-10-26 02:08:46,893 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:08:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:46 Caused by: Ice.CommunicatorDestroyedException: null
02:08:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:46 ... 7 common frames omitted
02:08:48 2024-10-26 02:08:48,674 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:08:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:08:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:08:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:08:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:08:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:08:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:08:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:08:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:08:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:08:48 Caused by: Ice.CommunicatorDestroyedException: null
02:08:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:08:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:08:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:08:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:08:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:08:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:08:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:08:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:08:48 ... 7 common frames omitted
02:09:29 2024-10-26 02:09:29,486 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:09:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:29 Caused by: Ice.CommunicatorDestroyedException: null
02:09:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:29 ... 7 common frames omitted
02:09:34 2024-10-26 02:09:34,347 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:09:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:34 Caused by: Ice.CommunicatorDestroyedException: null
02:09:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:34 ... 7 common frames omitted
02:09:39 2024-10-26 02:09:39,327 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:09:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:39 Caused by: Ice.CommunicatorDestroyedException: null
02:09:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:39 ... 7 common frames omitted
02:09:58 2024-10-26 02:09:58,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:09:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:09:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:09:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:09:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:09:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:09:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:09:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:09:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:09:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:09:58 Caused by: Ice.CommunicatorDestroyedException: null
02:09:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:09:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:09:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:09:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:09:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:09:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:09:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:09:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:09:58 ... 7 common frames omitted
02:10:40 2024-10-26 02:10:40,440 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:10:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:40 Caused by: Ice.CommunicatorDestroyedException: null
02:10:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:40 ... 7 common frames omitted
02:10:52 2024-10-26 02:10:52,524 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:10:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:52 Caused by: Ice.CommunicatorDestroyedException: null
02:10:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:52 ... 7 common frames omitted
02:10:53 2024-10-26 02:10:53,923 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:10:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:53 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:53 Caused by: Ice.CommunicatorDestroyedException: null
02:10:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:53 ... 7 common frames omitted
02:10:56 2024-10-26 02:10:56,875 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:10:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:56 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:56 Caused by: Ice.CommunicatorDestroyedException: null
02:10:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:56 ... 7 common frames omitted
02:10:58 2024-10-26 02:10:58,374 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:10:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:10:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:10:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:10:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:10:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:10:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:10:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:10:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:10:58 at java.base/java.lang.Thread.run(Thread.java:829)
02:10:58 Caused by: Ice.CommunicatorDestroyedException: null
02:10:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:10:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:10:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:10:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:10:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:10:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:10:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:10:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:10:58 ... 7 common frames omitted
02:11:00 2024-10-26 02:11:00,149 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:00 Caused by: Ice.CommunicatorDestroyedException: null
02:11:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:00 ... 7 common frames omitted
02:11:02 2024-10-26 02:11:02,498 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:02 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:02 Caused by: Ice.CommunicatorDestroyedException: null
02:11:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:02 ... 7 common frames omitted
02:11:04 2024-10-26 02:11:04,045 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:04 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:04 Caused by: Ice.CommunicatorDestroyedException: null
02:11:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:04 ... 7 common frames omitted
02:11:05 2024-10-26 02:11:05,622 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:05 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:05 Caused by: Ice.CommunicatorDestroyedException: null
02:11:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:05 ... 7 common frames omitted
02:11:07 2024-10-26 02:11:07,112 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:07 Caused by: Ice.CommunicatorDestroyedException: null
02:11:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:07 ... 7 common frames omitted
02:11:09 2024-10-26 02:11:09,633 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:09 Caused by: Ice.CommunicatorDestroyedException: null
02:11:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:09 ... 7 common frames omitted
02:11:10 2024-10-26 02:11:10,476 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:10 Caused by: Ice.CommunicatorDestroyedException: null
02:11:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:10 ... 7 common frames omitted
02:11:11 2024-10-26 02:11:11,754 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:11 Caused by: Ice.CommunicatorDestroyedException: null
02:11:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:11 ... 7 common frames omitted
02:11:12 2024-10-26 02:11:12,560 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:12 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:12 Caused by: Ice.CommunicatorDestroyedException: null
02:11:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:12 ... 7 common frames omitted
02:11:13 2024-10-26 02:11:13,854 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:13 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:13 Caused by: Ice.CommunicatorDestroyedException: null
02:11:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:13 ... 7 common frames omitted
02:11:14 2024-10-26 02:11:14,659 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:14 Caused by: Ice.CommunicatorDestroyedException: null
02:11:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:14 ... 7 common frames omitted
02:11:15 2024-10-26 02:11:15,918 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:15 Caused by: Ice.CommunicatorDestroyedException: null
02:11:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:15 ... 7 common frames omitted
02:11:16 2024-10-26 02:11:16,704 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:16 Caused by: Ice.CommunicatorDestroyedException: null
02:11:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:16 ... 7 common frames omitted
02:11:18 2024-10-26 02:11:18,028 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:18 Caused by: Ice.CommunicatorDestroyedException: null
02:11:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:18 ... 7 common frames omitted
02:11:18 2024-10-26 02:11:18,879 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:18 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:18 Caused by: Ice.CommunicatorDestroyedException: null
02:11:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:18 ... 7 common frames omitted
02:11:20 2024-10-26 02:11:20,120 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:20 Caused by: Ice.CommunicatorDestroyedException: null
02:11:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:20 ... 7 common frames omitted
02:11:20 2024-10-26 02:11:20,928 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:20 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:20 Caused by: Ice.CommunicatorDestroyedException: null
02:11:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:20 ... 7 common frames omitted
02:11:22 2024-10-26 02:11:22,209 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:22 Caused by: Ice.CommunicatorDestroyedException: null
02:11:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:22 ... 7 common frames omitted
02:11:23 2024-10-26 02:11:23,017 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:23 Caused by: Ice.CommunicatorDestroyedException: null
02:11:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:23 ... 7 common frames omitted
02:11:24 2024-10-26 02:11:24,348 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:24 Caused by: Ice.CommunicatorDestroyedException: null
02:11:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:24 ... 7 common frames omitted
02:11:25 2024-10-26 02:11:25,230 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:25 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:25 Caused by: Ice.CommunicatorDestroyedException: null
02:11:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:25 ... 7 common frames omitted
02:11:26 2024-10-26 02:11:26,819 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:26 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:26 Caused by: Ice.CommunicatorDestroyedException: null
02:11:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:26 ... 7 common frames omitted
02:11:27 2024-10-26 02:11:27,669 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:27 Caused by: Ice.CommunicatorDestroyedException: null
02:11:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:27 ... 7 common frames omitted
02:11:29 2024-10-26 02:11:29,426 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:29 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:29 Caused by: Ice.CommunicatorDestroyedException: null
02:11:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:29 ... 7 common frames omitted
02:11:30 2024-10-26 02:11:30,335 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:30 Caused by: Ice.CommunicatorDestroyedException: null
02:11:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:30 ... 7 common frames omitted
02:11:31 2024-10-26 02:11:31,876 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:31 Caused by: Ice.CommunicatorDestroyedException: null
02:11:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:31 ... 7 common frames omitted
02:11:32 2024-10-26 02:11:32,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:32 Caused by: Ice.CommunicatorDestroyedException: null
02:11:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:32 ... 7 common frames omitted
02:11:34 2024-10-26 02:11:34,469 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:34 Caused by: Ice.CommunicatorDestroyedException: null
02:11:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:34 ... 7 common frames omitted
02:11:35 2024-10-26 02:11:35,368 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:11:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:35 Caused by: Ice.CommunicatorDestroyedException: null
02:11:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:35 ... 7 common frames omitted
02:11:36 2024-10-26 02:11:36,965 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:36 Caused by: Ice.CommunicatorDestroyedException: null
02:11:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:36 ... 7 common frames omitted
02:11:38 2024-10-26 02:11:38,013 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:11:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:38 Caused by: Ice.CommunicatorDestroyedException: null
02:11:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:38 ... 7 common frames omitted
02:11:39 2024-10-26 02:11:39,911 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:39 Caused by: Ice.CommunicatorDestroyedException: null
02:11:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:39 ... 7 common frames omitted
02:11:40 2024-10-26 02:11:40,851 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:11:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:40 Caused by: Ice.CommunicatorDestroyedException: null
02:11:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:40 ... 7 common frames omitted
02:11:42 2024-10-26 02:11:42,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:11:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:42 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:42 Caused by: Ice.CommunicatorDestroyedException: null
02:11:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:42 ... 7 common frames omitted
02:11:43 2024-10-26 02:11:43,579 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:11:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:43 Caused by: Ice.CommunicatorDestroyedException: null
02:11:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:43 ... 7 common frames omitted
02:11:45 2024-10-26 02:11:45,261 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:11:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:45 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:45 Caused by: Ice.CommunicatorDestroyedException: null
02:11:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:45 ... 7 common frames omitted
02:11:46 2024-10-26 02:11:46,386 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:11:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:46 Caused by: Ice.CommunicatorDestroyedException: null
02:11:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:46 ... 7 common frames omitted
02:11:53 2024-10-26 02:11:53,183 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:11:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:53 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:53 Caused by: Ice.CommunicatorDestroyedException: null
02:11:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:53 ... 7 common frames omitted
02:11:54 2024-10-26 02:11:54,085 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:11:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:54 Caused by: Ice.CommunicatorDestroyedException: null
02:11:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:54 ... 7 common frames omitted
02:11:59 2024-10-26 02:11:59,621 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:11:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:11:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:11:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:11:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:11:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:11:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:11:59 Caused by: Ice.CommunicatorDestroyedException: null
02:11:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:11:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:11:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:11:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:11:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:11:59 ... 7 common frames omitted
02:12:00 2024-10-26 02:12:00,500 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:00 Caused by: Ice.CommunicatorDestroyedException: null
02:12:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:00 ... 7 common frames omitted
02:12:09 2024-10-26 02:12:09,122 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:09 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:09 Caused by: Ice.CommunicatorDestroyedException: null
02:12:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:09 ... 7 common frames omitted
02:12:10 2024-10-26 02:12:10,066 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:12:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:10 Caused by: Ice.CommunicatorDestroyedException: null
02:12:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:10 ... 7 common frames omitted
02:12:15 2024-10-26 02:12:15,547 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:12:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:15 Caused by: Ice.CommunicatorDestroyedException: null
02:12:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:15 ... 7 common frames omitted
02:12:16 2024-10-26 02:12:16,489 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:12:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:16 Caused by: Ice.CommunicatorDestroyedException: null
02:12:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:16 ... 7 common frames omitted
02:12:22 2024-10-26 02:12:22,990 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:12:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:22 Caused by: Ice.CommunicatorDestroyedException: null
02:12:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:22 ... 7 common frames omitted
02:12:23 2024-10-26 02:12:23,903 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:12:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:23 Caused by: Ice.CommunicatorDestroyedException: null
02:12:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:23 ... 7 common frames omitted
02:12:36 2024-10-26 02:12:36,722 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:12:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:36 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:36 Caused by: Ice.CommunicatorDestroyedException: null
02:12:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:36 ... 7 common frames omitted
02:12:37 2024-10-26 02:12:37,548 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:12:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:37 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:37 Caused by: Ice.CommunicatorDestroyedException: null
02:12:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:37 ... 7 common frames omitted
02:12:43 2024-10-26 02:12:43,092 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:12:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:43 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:43 Caused by: Ice.CommunicatorDestroyedException: null
02:12:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:43 ... 7 common frames omitted
02:12:44 2024-10-26 02:12:44,002 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:12:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:44 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:44 Caused by: Ice.CommunicatorDestroyedException: null
02:12:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:44 ... 7 common frames omitted
02:12:51 2024-10-26 02:12:51,881 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:12:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:51 Caused by: Ice.CommunicatorDestroyedException: null
02:12:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:51 ... 7 common frames omitted
02:12:52 2024-10-26 02:12:52,827 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:12:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:52 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:52 Caused by: Ice.CommunicatorDestroyedException: null
02:12:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:52 ... 7 common frames omitted
02:12:59 2024-10-26 02:12:59,446 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:12:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:12:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:12:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:12:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:12:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:12:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:12:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:12:59 Caused by: Ice.CommunicatorDestroyedException: null
02:12:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:12:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:12:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:12:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:12:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:12:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:12:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:12:59 ... 7 common frames omitted
02:13:00 2024-10-26 02:13:00,364 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:00 Caused by: Ice.CommunicatorDestroyedException: null
02:13:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:00 ... 7 common frames omitted
02:13:10 2024-10-26 02:13:10,548 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:13:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:10 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:10 Caused by: Ice.CommunicatorDestroyedException: null
02:13:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:10 ... 7 common frames omitted
02:13:11 2024-10-26 02:13:11,408 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:11 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:11 Caused by: Ice.CommunicatorDestroyedException: null
02:13:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:11 ... 7 common frames omitted
02:13:14 2024-10-26 02:13:14,892 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:14 Caused by: Ice.CommunicatorDestroyedException: null
02:13:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:14 ... 7 common frames omitted
02:13:15 2024-10-26 02:13:15,751 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:13:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:15 Caused by: Ice.CommunicatorDestroyedException: null
02:13:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:15 ... 7 common frames omitted
02:13:23 2024-10-26 02:13:23,505 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:23 Caused by: Ice.CommunicatorDestroyedException: null
02:13:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:23 ... 7 common frames omitted
02:13:24 2024-10-26 02:13:24,428 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:13:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:24 Caused by: Ice.CommunicatorDestroyedException: null
02:13:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:24 ... 7 common frames omitted
02:13:31 2024-10-26 02:13:31,094 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:13:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:31 Caused by: Ice.CommunicatorDestroyedException: null
02:13:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:31 ... 7 common frames omitted
02:13:32 2024-10-26 02:13:32,043 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:13:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:32 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:32 Caused by: Ice.CommunicatorDestroyedException: null
02:13:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:32 ... 7 common frames omitted
02:13:38 2024-10-26 02:13:38,730 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:13:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:38 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:38 Caused by: Ice.CommunicatorDestroyedException: null
02:13:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:38 ... 7 common frames omitted
02:13:39 2024-10-26 02:13:39,588 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:13:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:39 Caused by: Ice.CommunicatorDestroyedException: null
02:13:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:39 ... 7 common frames omitted
02:13:47 2024-10-26 02:13:47,269 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:13:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:47 Caused by: Ice.CommunicatorDestroyedException: null
02:13:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:47 ... 7 common frames omitted
02:13:48 2024-10-26 02:13:48,189 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:13:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:48 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:48 Caused by: Ice.CommunicatorDestroyedException: null
02:13:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:48 ... 7 common frames omitted
02:13:54 2024-10-26 02:13:54,668 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:13:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:54 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:54 Caused by: Ice.CommunicatorDestroyedException: null
02:13:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:54 ... 7 common frames omitted
02:13:55 2024-10-26 02:13:55,602 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:13:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:55 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:55 Caused by: Ice.CommunicatorDestroyedException: null
02:13:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:55 ... 7 common frames omitted
02:13:59 2024-10-26 02:13:59,048 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:13:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:13:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:13:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:13:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:13:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:13:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:13:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:13:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:13:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:13:59 Caused by: Ice.CommunicatorDestroyedException: null
02:13:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:13:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:13:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:13:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:13:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:13:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:13:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:13:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:13:59 ... 7 common frames omitted
02:14:00 2024-10-26 02:14:00,004 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:00 Caused by: Ice.CommunicatorDestroyedException: null
02:14:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:00 ... 7 common frames omitted
02:14:07 2024-10-26 02:14:07,460 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:14:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:07 Caused by: Ice.CommunicatorDestroyedException: null
02:14:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:07 ... 7 common frames omitted
02:14:08 2024-10-26 02:14:08,367 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:14:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:08 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:08 Caused by: Ice.CommunicatorDestroyedException: null
02:14:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:08 ... 7 common frames omitted
02:14:14 2024-10-26 02:14:14,764 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:14:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:14 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:14 Caused by: Ice.CommunicatorDestroyedException: null
02:14:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:14 ... 7 common frames omitted
02:14:15 2024-10-26 02:14:15,724 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:14:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:15 Caused by: Ice.CommunicatorDestroyedException: null
02:14:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:15 ... 7 common frames omitted
02:14:23 2024-10-26 02:14:23,241 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:14:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:23 Caused by: Ice.CommunicatorDestroyedException: null
02:14:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:23 ... 7 common frames omitted
02:14:24 2024-10-26 02:14:24,162 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:14:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:24 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:24 Caused by: Ice.CommunicatorDestroyedException: null
02:14:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:24 ... 7 common frames omitted
02:14:30 2024-10-26 02:14:30,810 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:14:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:30 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:30 Caused by: Ice.CommunicatorDestroyedException: null
02:14:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:30 ... 7 common frames omitted
02:14:31 2024-10-26 02:14:31,722 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:14:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:31 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:31 Caused by: Ice.CommunicatorDestroyedException: null
02:14:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:31 ... 7 common frames omitted
02:14:39 2024-10-26 02:14:39,382 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:14:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:39 Caused by: Ice.CommunicatorDestroyedException: null
02:14:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:39 ... 7 common frames omitted
02:14:40 2024-10-26 02:14:40,270 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:14:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:40 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:40 Caused by: Ice.CommunicatorDestroyedException: null
02:14:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:40 ... 7 common frames omitted
02:14:51 2024-10-26 02:14:51,014 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:14:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:51 Caused by: Ice.CommunicatorDestroyedException: null
02:14:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:51 ... 7 common frames omitted
02:14:51 2024-10-26 02:14:51,930 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:14:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:51 Caused by: Ice.CommunicatorDestroyedException: null
02:14:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:51 ... 7 common frames omitted
02:14:59 2024-10-26 02:14:59,369 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:14:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:14:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:14:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:14:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:14:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:14:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:14:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:14:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:14:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:14:59 Caused by: Ice.CommunicatorDestroyedException: null
02:14:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:14:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:14:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:14:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:14:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:14:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:14:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:14:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:14:59 ... 7 common frames omitted
02:15:00 2024-10-26 02:15:00,205 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:15:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:00 Caused by: Ice.CommunicatorDestroyedException: null
02:15:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:00 ... 7 common frames omitted
02:15:06 2024-10-26 02:15:06,740 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:15:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:06 Caused by: Ice.CommunicatorDestroyedException: null
02:15:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:06 ... 7 common frames omitted
02:15:07 2024-10-26 02:15:07,683 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:15:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:07 Caused by: Ice.CommunicatorDestroyedException: null
02:15:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:07 ... 7 common frames omitted
02:15:15 2024-10-26 02:15:15,244 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:15:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:15 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:15 Caused by: Ice.CommunicatorDestroyedException: null
02:15:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:15 ... 7 common frames omitted
02:15:16 2024-10-26 02:15:16,161 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:15:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:16 Caused by: Ice.CommunicatorDestroyedException: null
02:15:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:16 ... 7 common frames omitted
02:15:22 2024-10-26 02:15:22,750 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:15:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:22 Caused by: Ice.CommunicatorDestroyedException: null
02:15:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:22 ... 7 common frames omitted
02:15:23 2024-10-26 02:15:23,584 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:15:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:23 Caused by: Ice.CommunicatorDestroyedException: null
02:15:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:23 ... 7 common frames omitted
02:15:27 2024-10-26 02:15:27,032 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:15:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:27 Caused by: Ice.CommunicatorDestroyedException: null
02:15:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:27 ... 7 common frames omitted
02:15:27 2024-10-26 02:15:27,991 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:15:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:27 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:27 Caused by: Ice.CommunicatorDestroyedException: null
02:15:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:27 ... 7 common frames omitted
02:15:34 2024-10-26 02:15:34,463 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:15:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:34 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:34 Caused by: Ice.CommunicatorDestroyedException: null
02:15:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:34 ... 7 common frames omitted
02:15:35 2024-10-26 02:15:35,338 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:15:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:35 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:35 Caused by: Ice.CommunicatorDestroyedException: null
02:15:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:35 ... 7 common frames omitted
02:15:39 2024-10-26 02:15:39,112 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:15:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:39 Caused by: Ice.CommunicatorDestroyedException: null
02:15:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:39 ... 7 common frames omitted
02:15:39 2024-10-26 02:15:39,952 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
02:15:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:39 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:39 Caused by: Ice.CommunicatorDestroyedException: null
02:15:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:39 ... 7 common frames omitted
02:15:46 2024-10-26 02:15:46,505 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:15:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:46 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:46 Caused by: Ice.CommunicatorDestroyedException: null
02:15:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:46 ... 7 common frames omitted
02:15:47 2024-10-26 02:15:47,402 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
02:15:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:47 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:47 Caused by: Ice.CommunicatorDestroyedException: null
02:15:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:47 ... 7 common frames omitted
02:15:50 2024-10-26 02:15:50,968 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:15:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:50 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:50 Caused by: Ice.CommunicatorDestroyedException: null
02:15:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:50 ... 7 common frames omitted
02:15:51 2024-10-26 02:15:51,788 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
02:15:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:51 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:51 Caused by: Ice.CommunicatorDestroyedException: null
02:15:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:51 ... 7 common frames omitted
02:15:59 2024-10-26 02:15:59,381 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:15:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:15:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:15:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:15:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:15:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:15:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:15:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:15:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:15:59 at java.base/java.lang.Thread.run(Thread.java:829)
02:15:59 Caused by: Ice.CommunicatorDestroyedException: null
02:15:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:15:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:15:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:15:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:15:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:15:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:15:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:15:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:15:59 ... 7 common frames omitted
02:16:00 2024-10-26 02:16:00,246 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
02:16:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:00 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:00 Caused by: Ice.CommunicatorDestroyedException: null
02:16:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:00 ... 7 common frames omitted
02:16:06 2024-10-26 02:16:06,945 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
02:16:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:06 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:06 Caused by: Ice.CommunicatorDestroyedException: null
02:16:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:06 ... 7 common frames omitted
02:16:07 2024-10-26 02:16:07,752 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
02:16:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:07 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:07 Caused by: Ice.CommunicatorDestroyedException: null
02:16:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:07 ... 7 common frames omitted
02:16:16 2024-10-26 02:16:16,297 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
02:16:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:16 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:16 Caused by: Ice.CommunicatorDestroyedException: null
02:16:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:16 ... 7 common frames omitted
02:16:17 2024-10-26 02:16:17,088 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
02:16:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:17 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:17 Caused by: Ice.CommunicatorDestroyedException: null
02:16:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:17 ... 7 common frames omitted
02:16:22 2024-10-26 02:16:22,601 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
02:16:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:22 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:22 Caused by: Ice.CommunicatorDestroyedException: null
02:16:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:22 ... 7 common frames omitted
02:16:23 2024-10-26 02:16:23,424 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
02:16:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
02:16:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
02:16:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
02:16:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
02:16:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
02:16:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
02:16:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
02:16:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
02:16:23 at java.base/java.lang.Thread.run(Thread.java:829)
02:16:23 Caused by: Ice.CommunicatorDestroyedException: null
02:16:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
02:16:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
02:16:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
02:16:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
02:16:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
02:16:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
02:16:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
02:16:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
02:16:23 ... 7 common frames omitted
02:16:23 ===============================================
02:16:23 OmeroJava.integration
02:16:23 Total tests run: 2589, Passes: 2588, Failures: 1, Skips: 0
02:16:23 ===============================================
02:16:26 The tests failed.
02:16:26
02:16:26 BUILD SUCCESSFUL
02:16:26 Total time: 69 minutes 25 seconds
02:16:26 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -Dtestreports.dir=target/reports/integration
02:16:26 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
02:16:28 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
02:16:30 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:16:30 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
02:16:30
02:16:30 python-integration:
02:16:30 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration
02:16:43 ============================= test session starts ==============================
02:16:43 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
02:16:43 cachedir: .pytest_cache
02:16:43 django: version: 4.2.16, settings: omeroweb.settings (from ini)
02:16:43 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
02:16:43 configfile: pytest.ini
02:16:43 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
02:16:57 collecting ... collected 2061 items / 36 deselected / 2025 selected
02:17:05 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 FAILED [ 0%]
02:17:11 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 FAILED [ 0%]
02:17:14 test/integration/clitest/test_admin.py::TestAdmin::test_log PASSED [ 0%]
02:17:17 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_log PASSED [ 0%]
02:17:23 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 FAILED [ 0%]
02:17:29 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 FAILED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Image] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Dataset] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Project] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Plate] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Screen] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Image] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Dataset] PASSED [ 0%]
02:17:31 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Project] PASSED [ 0%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Plate] PASSED [ 0%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Screen] PASSED [ 0%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Image] PASSED [ 0%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Dataset] PASSED [ 0%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Project] PASSED [ 0%]
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02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Image] PASSED [ 1%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Dataset] PASSED [ 1%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Project] PASSED [ 1%]
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02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Image] PASSED [ 1%]
02:17:32 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Dataset] PASSED [ 1%]
02:17:33 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Project] PASSED [ 1%]
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02:17:33 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Dataset] PASSED [ 1%]
02:17:33 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Project] PASSED [ 1%]
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02:17:33 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Project] PASSED [ 1%]
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02:17:33 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Screen] PASSED [ 2%]
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02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Dataset] PASSED [ 2%]
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02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Image] PASSED [ 2%]
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02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Screen] PASSED [ 2%]
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02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Project] PASSED [ 2%]
02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Plate] PASSED [ 2%]
02:17:34 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Screen] PASSED [ 2%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Image] PASSED [ 2%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Dataset] PASSED [ 2%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Project] PASSED [ 2%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Plate] PASSED [ 2%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Screen] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Image] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Dataset] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Project] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Plate] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Screen] PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testNonMember PASSED [ 3%]
02:17:35 test/integration/clitest/test_chgrp.py::TestChgrp::testGroupName PASSED [ 3%]
02:17:55 test/integration/clitest/test_chgrp.py::TestChgrp::testFileset PASSED [ 3%]
02:17:58 test/integration/clitest/test_chgrp.py::TestChgrp::testFilesetPartialFailing PASSED [ 3%]
02:18:02 test/integration/clitest/test_chgrp.py::TestChgrp::testFilesetOneImage PASSED [ 3%]
02:18:06 test/integration/clitest/test_chgrp.py::TestChgrp::testFilesetAllImagesMoveImages PASSED [ 3%]
02:18:09 test/integration/clitest/test_chgrp.py::TestChgrp::testFilesetAllImagesMoveDataset PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testNonExistingGroupId[] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testNonExistingGroupId[Group:] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testNonExistingGroupId[ExperimenterGroup:] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testNonExistingGroupName PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[True-1] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[True-2] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[True-3] PASSED [ 3%]
02:18:10 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[False-1] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[False-2] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsSameClass[False-3] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[True-1] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[True-2] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[True-3] PASSED [ 4%]
02:18:11 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[False-1] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[False-2] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesSeparated[False-3] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[True-1] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[True-2] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[True-3] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[False-1] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[False-2] PASSED [ 4%]
02:18:12 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSimpleObjectsTwoClassesInterlaced[False-3] PASSED [ 4%]
02:18:13 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[True-1-/Dataset] PASSED [ 4%]
02:18:13 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[True-1-] PASSED [ 4%]
02:18:13 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[True-2-/Dataset] PASSED [ 4%]
02:18:13 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[True-2-] PASSED [ 4%]
02:18:14 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[False-1-/Dataset] PASSED [ 4%]
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02:18:14 test/integration/clitest/test_chgrp.py::TestChgrp::testBasicSkipheadBothForms[False-2-/Dataset] PASSED [ 5%]
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02:18:15 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[True-1] PASSED [ 5%]
02:18:15 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[True-2] PASSED [ 5%]
02:18:15 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[True-3] PASSED [ 5%]
02:18:15 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[False-1] PASSED [ 5%]
02:18:16 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[False-2] PASSED [ 5%]
02:18:16 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsSameClass[False-3] PASSED [ 5%]
02:18:16 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[True-1] PASSED [ 5%]
02:18:17 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[True-2] PASSED [ 5%]
02:18:17 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[True-3] PASSED [ 5%]
02:18:18 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[False-1] PASSED [ 5%]
02:18:18 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[False-2] PASSED [ 5%]
02:18:18 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsSeparated[False-3] PASSED [ 5%]
02:18:19 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[True-1] PASSED [ 5%]
02:18:19 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[True-2] PASSED [ 5%]
02:18:20 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[True-3] PASSED [ 5%]
02:18:20 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[False-1] PASSED [ 5%]
02:18:20 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[False-2] PASSED [ 5%]
02:18:21 test/integration/clitest/test_chgrp.py::TestChgrp::testMultipleSkipheadsPlusObjectsInterlaced[False-3] PASSED [ 5%]
02:18:23 test/integration/clitest/test_chgrp.py::TestChgrpRoot::testNonMember PASSED [ 6%]
02:18:27 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[-Image] PASSED [ 6%]
02:18:29 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[-Dataset] PASSED [ 6%]
02:18:31 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[-Project] PASSED [ 6%]
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02:18:37 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[User:-Image] PASSED [ 6%]
02:18:39 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[User:-Dataset] PASSED [ 6%]
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02:18:46 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[User:-Screen] PASSED [ 6%]
02:18:48 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[Experimenter:-Image] PASSED [ 6%]
02:18:50 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[Experimenter:-Dataset] PASSED [ 6%]
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02:18:54 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithId[Experimenter:-Plate] PASSED [ 6%]
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02:19:00 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageTargetUser PASSED [ 6%]
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02:19:04 test/integration/clitest/test_chown.py::TestChown::testChownBasicUsageWithName[-/] PASSED [ 6%]
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02:19:28 test/integration/clitest/test_chown.py::TestChown::testFileset[fileset-1] PASSED [ 7%]
02:19:34 test/integration/clitest/test_chown.py::TestChown::testFileset[fileset-2] PASSED [ 7%]
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02:19:47 test/integration/clitest/test_chown.py::TestChown::testFilesetAllImagesChownDataset PASSED [ 7%]
02:19:49 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[True-1] PASSED [ 7%]
02:19:51 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[True-2] PASSED [ 7%]
02:19:53 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[True-3] PASSED [ 7%]
02:19:55 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[False-1] PASSED [ 7%]
02:19:58 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[False-2] PASSED [ 7%]
02:20:00 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsSameClass[False-3] PASSED [ 7%]
02:20:02 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesSeparated[True-1] PASSED [ 7%]
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02:20:08 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesSeparated[False-1] PASSED [ 7%]
02:20:11 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesSeparated[False-2] PASSED [ 7%]
02:20:13 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesSeparated[False-3] PASSED [ 7%]
02:20:15 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[True-1] PASSED [ 8%]
02:20:17 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[True-2] PASSED [ 8%]
02:20:20 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[True-3] PASSED [ 8%]
02:20:22 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[False-1] PASSED [ 8%]
02:20:24 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[False-2] PASSED [ 8%]
02:20:27 test/integration/clitest/test_chown.py::TestChown::testMultipleSimpleObjectsTwoClassesInterlaced[False-3] PASSED [ 8%]
02:20:29 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[True-1-/Dataset] PASSED [ 8%]
02:20:31 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[True-1-] PASSED [ 8%]
02:20:34 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[True-2-/Dataset] PASSED [ 8%]
02:20:36 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[True-2-] PASSED [ 8%]
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02:20:40 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[False-1-] PASSED [ 8%]
02:20:42 test/integration/clitest/test_chown.py::TestChown::testBasicSkipheadBothForms[False-2-/Dataset] PASSED [ 8%]
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02:20:47 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsSeparated[True-1] PASSED [ 8%]
02:20:50 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsSeparated[True-2] PASSED [ 8%]
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02:20:55 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsSeparated[False-1] PASSED [ 8%]
02:20:57 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsSeparated[False-2] PASSED [ 8%]
02:21:00 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsSeparated[False-3] PASSED [ 8%]
02:21:03 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsInterlaced[True-1] PASSED [ 8%]
02:21:05 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsInterlaced[True-2] PASSED [ 9%]
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02:21:11 test/integration/clitest/test_chown.py::TestChown::testMultipleSkipheadsPlusObjectsInterlaced[False-1] PASSED [ 9%]
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02:21:18 test/integration/clitest/test_chown.py::TestChown::testDryRun PASSED [ 9%]
02:21:20 test/integration/clitest/test_chown.py::TestChown::testExcludeNone PASSED [ 9%]
02:21:22 test/integration/clitest/test_chown.py::TestChown::testExcludeDataset PASSED [ 9%]
02:21:24 test/integration/clitest/test_chown.py::TestChown::testExcludeImage PASSED [ 9%]
02:21:27 test/integration/clitest/test_chown.py::TestChown::testExcludeOverridesInclude PASSED [ 9%]
02:21:29 test/integration/clitest/test_chown.py::TestChown::testSeparateAnnotationTransfer PASSED [ 9%]
02:21:31 test/integration/clitest/test_chown.py::TestChown::testOutputWithElision PASSED [ 9%]
02:21:36 test/integration/clitest/test_chown.py::TestTagChown::testChownOneTagSetWithUniqueTags PASSED [ 9%]
02:21:40 test/integration/clitest/test_chown.py::TestChownRoot::testChownBasicUsageWithId PASSED [ 9%]
02:21:44 test/integration/clitest/test_chown.py::TestChownNonGroupOwner::testChownBasicUsageWithId PASSED [ 9%]
02:21:46 test/integration/clitest/test_cleanse.py::TestCleanse::testCleanseAdminOnly PASSED [ 9%]
02:22:00 test/integration/clitest/test_cleanse.py::TestCleanseFullAdmin::testCleanseBasic PASSED [ 9%]
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02:22:29 test/integration/clitest/test_cleanse.py::TestFixPyramids::test_fixpyramids_admin_only PASSED [ 9%]
02:22:31 test/integration/clitest/test_cleanse.py::TestFixPyramidsRestrictedAdmin::test_fixpyramids_restricted_admin PASSED [ 10%]
02:22:32 test/integration/clitest/test_db.py::TestDatabase::testBadVersionDies PASSED [ 10%]
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02:22:47 test/integration/clitest/test_db.py::TestDatabase::testPassword[--] PASSED [ 10%]
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02:22:50 test/integration/clitest/test_db.py::TestDatabase::testPassword[ome--] PASSED [ 10%]
02:22:51 test/integration/clitest/test_db.py::TestDatabase::testPassword[ome----no-salt] PASSED [ 10%]
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02:22:54 test/integration/clitest/test_db.py::TestDatabase::testScript[--] PASSED [ 10%]
02:22:55 test/integration/clitest/test_db.py::TestDatabase::testScript[---f] PASSED [ 10%]
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02:23:07 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[%s %s %s--] PASSED [ 11%]
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02:23:10 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s--] PASSED [ 11%]
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02:23:11 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s----file] PASSED [ 11%]
02:23:11 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt-] PASSED [ 11%]
02:23:11 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt--f] PASSED [ 11%]
02:23:12 test/integration/clitest/test_db.py::TestDatabase::testScriptDeveloperArgs[--version %s --patch %s --password %s---no-salt---file] PASSED [ 11%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Image-] PASSED [ 12%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Image-I] PASSED [ 12%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Dataset-] PASSED [ 12%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Dataset-I] PASSED [ 12%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Project-] PASSED [ 12%]
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02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Plate-] PASSED [ 12%]
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02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-] PASSED [ 12%]
02:23:14 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-I] PASSED [ 12%]
02:23:18 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-1] PASSED [ 12%]
02:23:22 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-2] PASSED [ 12%]
02:23:26 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-1] PASSED [ 12%]
02:23:29 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-2] PASSED [ 12%]
02:23:33 test/integration/clitest/test_delete.py::TestDelete::testFilesetPartialFailing PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testFilesetAllImagesDeleteDataset PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-1] PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-2] PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-3] PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-1] PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-2] PASSED [ 12%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-3] PASSED [ 13%]
02:23:37 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-1] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-2] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-3] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-1] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-2] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-3] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-1] PASSED [ 13%]
02:23:38 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-2] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-3] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-1] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-2] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-3] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-/Dataset] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-] PASSED [ 13%]
02:23:39 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-/Dataset] PASSED [ 13%]
02:23:40 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-] PASSED [ 13%]
02:23:40 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-/Dataset] PASSED [ 13%]
02:23:40 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-] PASSED [ 13%]
02:23:40 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-/Dataset] PASSED [ 13%]
02:23:41 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-] PASSED [ 14%]
02:23:41 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-1] PASSED [ 14%]
02:23:41 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-2] PASSED [ 14%]
02:23:41 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-3] PASSED [ 14%]
02:23:41 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-1] PASSED [ 14%]
02:23:42 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-2] PASSED [ 14%]
02:23:42 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-3] PASSED [ 14%]
02:23:42 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-1] PASSED [ 14%]
02:23:42 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-2] PASSED [ 14%]
02:23:43 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-3] PASSED [ 14%]
02:23:43 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-1] PASSED [ 14%]
02:23:43 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-2] PASSED [ 14%]
02:23:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-3] PASSED [ 14%]
02:23:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-1] PASSED [ 14%]
02:23:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-2] PASSED [ 14%]
02:23:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-3] PASSED [ 14%]
02:23:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-1] PASSED [ 14%]
02:23:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-2] PASSED [ 14%]
02:23:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-3] PASSED [ 14%]
02:23:45 test/integration/clitest/test_delete.py::TestDelete::testDryRun PASSED [ 14%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testExcludeNone PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testExcludeDataset PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testExcludeImage PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testExcludeOverridesInclude PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusion PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionOverride PASSED [ 15%]
02:23:46 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionPartialOverride PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testSeparateAnnotationDelete PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDelete PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDeleteWithOverride PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1] PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2] PASSED [ 15%]
02:23:47 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3] PASSED [ 15%]
02:23:48 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionForce PASSED [ 15%]
02:23:49 test/integration/clitest/test_delete.py::TestDelete::testElisionDefaultFailForce PASSED [ 15%]
02:24:18 test/integration/clitest/test_delete.py::TestDelete::testOutputWithElision PASSED [ 15%]
02:24:20 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetNotTags PASSED [ 15%]
02:24:21 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsNotTags PASSED [ 15%]
02:24:21 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetIncludingTags PASSED [ 15%]
02:24:21 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsIncludingTags PASSED [ 15%]
02:24:23 test/integration/clitest/test_download.py::TestDownload::testNonExistingOriginalFile[] PASSED [ 16%]
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02:24:23 test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[] PASSED [ 16%]
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02:24:24 test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[] PASSED [ 16%]
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02:24:26 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[] PASSED [ 16%]
02:24:28 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[OriginalFile:] PASSED [ 16%]
02:24:28 test/integration/clitest/test_download.py::TestDownload::testNonExistingFileAnnotation PASSED [ 16%]
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02:24:30 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationMultipleGroups PASSED [ 16%]
02:24:34 test/integration/clitest/test_download.py::TestDownload::testNonExistingImage PASSED [ 16%]
02:24:37 test/integration/clitest/test_download.py::TestDownload::testImageFileset[True] PASSED [ 16%]
02:24:41 test/integration/clitest/test_download.py::TestDownload::testImageFileset[False] PASSED [ 16%]
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02:24:54 test/integration/clitest/test_download.py::TestDownload::testValidPolicy PASSED [ 16%]
02:25:09 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image] PASSED [ 16%]
02:25:09 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,-write,-image,-plate] SKIPPED [ 17%]
02:25:09 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,+write,+image,-plate] SKIPPED [ 17%]
02:25:09 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,-plate] SKIPPED [ 17%]
02:25:09 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,+plate] SKIPPED [ 17%]
02:25:23 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image] PASSED [ 17%]
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02:25:51 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,+write,+image,-plate] PASSED [ 17%]
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02:26:19 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,+plate] PASSED [ 17%]
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02:28:01 test/integration/clitest/test_group.py::TestGroup::testList[None-None] PASSED [ 19%]
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02:28:30 test/integration/clitest/test_group.py::TestGroup::testInfoInvalidGroup PASSED [ 19%]
02:28:30 test/integration/clitest/test_group.py::TestGroup::testListUsersNoArgument PASSED [ 19%]
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02:28:30 test/integration/clitest/test_group.py::TestGroup::testListUsersInvalidArgument PASSED [ 20%]
02:28:32 test/integration/clitest/test_group.py::TestGroupRoot::testAddDefaults PASSED [ 20%]
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02:28:32 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-annotate] PASSED [ 20%]
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02:28:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddIgnoreExisting PASSED [ 20%]
02:28:33 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------id] PASSED [ 20%]
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02:28:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----id] PASSED [ 21%]
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02:28:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------name] PASSED [ 21%]
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02:28:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------id] PASSED [ 21%]
02:28:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------name] PASSED [ 21%]
02:28:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------id] PASSED [ 21%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------name] PASSED [ 21%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----id] PASSED [ 22%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----name] PASSED [ 22%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----id] PASSED [ 22%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----name] PASSED [ 22%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------id] PASSED [ 22%]
02:28:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------name] PASSED [ 22%]
02:28:43 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------id] PASSED [ 22%]
02:28:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------name] PASSED [ 22%]
02:28:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----id] PASSED [ 22%]
02:28:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----name] PASSED [ 22%]
02:28:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----id] PASSED [ 22%]
02:28:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----name] PASSED [ 22%]
02:28:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------id] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------name] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------id] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------name] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----id] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----name] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----id] PASSED [ 22%]
02:28:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----name] PASSED [ 22%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------id] PASSED [ 23%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------name] PASSED [ 23%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------id] PASSED [ 23%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------name] PASSED [ 23%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----id] PASSED [ 23%]
02:28:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----name] PASSED [ 23%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----id] PASSED [ 23%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----name] PASSED [ 23%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------id] PASSED [ 23%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------name] PASSED [ 23%]
02:28:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------id] PASSED [ 23%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------name] PASSED [ 23%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----id] PASSED [ 23%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----name] PASSED [ 23%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----id] PASSED [ 23%]
02:28:51 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----name] PASSED [ 23%]
02:28:53 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---id] PASSED [ 23%]
02:28:55 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---name] PASSED [ 23%]
02:28:57 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---id] PASSED [ 23%]
02:28:59 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---name] PASSED [ 23%]
02:29:01 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---id] PASSED [ 24%]
02:29:03 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---name] PASSED [ 24%]
02:29:05 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---id] PASSED [ 24%]
02:29:07 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---name] PASSED [ 24%]
02:29:09 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---id] PASSED [ 24%]
02:29:11 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---name] PASSED [ 24%]
02:29:13 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---id] PASSED [ 24%]
02:29:15 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---name] PASSED [ 24%]
02:29:17 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---id] PASSED [ 24%]
02:29:19 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---name] PASSED [ 24%]
02:29:21 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---id] PASSED [ 24%]
02:29:23 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---name] PASSED [ 24%]
02:29:25 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---id] PASSED [ 24%]
02:29:27 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---name] PASSED [ 24%]
02:29:29 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---id] PASSED [ 24%]
02:29:31 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---name] PASSED [ 24%]
02:29:33 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---id] PASSED [ 24%]
02:29:35 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---name] PASSED [ 24%]
02:29:37 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---id] PASSED [ 24%]
02:29:39 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---name] PASSED [ 24%]
02:29:41 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---id] PASSED [ 24%]
02:29:43 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---name] PASSED [ 25%]
02:29:45 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---id] PASSED [ 25%]
02:29:47 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---name] PASSED [ 25%]
02:29:49 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---id] PASSED [ 25%]
02:29:51 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---name] PASSED [ 25%]
02:29:53 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---id] PASSED [ 25%]
02:29:55 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---name] PASSED [ 25%]
02:29:57 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---id] PASSED [ 25%]
02:29:59 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---name] PASSED [ 25%]
02:30:01 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---id] PASSED [ 25%]
02:30:03 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---name] PASSED [ 25%]
02:30:05 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---id] PASSED [ 25%]
02:30:07 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---name] PASSED [ 25%]
02:30:09 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---id] PASSED [ 25%]
02:30:11 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---name] PASSED [ 25%]
02:30:12 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---id] PASSED [ 25%]
02:30:14 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---name] PASSED [ 25%]
02:30:16 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---id] PASSED [ 25%]
02:30:18 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---name] PASSED [ 25%]
02:30:20 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---id] PASSED [ 25%]
02:30:22 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---name] PASSED [ 26%]
02:30:24 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---id] PASSED [ 26%]
02:30:26 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---name] PASSED [ 26%]
02:30:33 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-id] PASSED [ 26%]
02:30:41 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-name] PASSED [ 26%]
02:30:49 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-id] PASSED [ 26%]
02:30:58 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-name] PASSED [ 26%]
02:31:05 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-id] PASSED [ 26%]
02:31:13 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-name] PASSED [ 26%]
02:31:21 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-id] PASSED [ 26%]
02:31:28 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-name] PASSED [ 26%]
02:31:43 test/integration/clitest/test_import.py::TestImport::testAutoClose PASSED [ 26%]
02:31:56 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-legacy] PASSED [ 26%]
02:32:08 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-underscore] PASSED [ 26%]
02:32:21 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[CRC-32-underscore] PASSED [ 26%]
02:32:33 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[File-Size-64-underscore] PASSED [ 26%]
02:32:46 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[MD5-128-underscore] PASSED [ 26%]
02:32:58 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-32-underscore] PASSED [ 26%]
02:33:10 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-128-underscore] PASSED [ 26%]
02:33:23 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[SHA1-160-underscore] PASSED [ 26%]
02:33:36 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-True] PASSED [ 27%]
02:33:48 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-False] PASSED [ 27%]
02:34:01 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-True] PASSED [ 27%]
02:34:13 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-False] PASSED [ 27%]
02:34:26 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-True] PASSED [ 27%]
02:34:38 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-False] PASSED [ 27%]
02:34:51 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-True] PASSED [ 27%]
02:35:03 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-False] PASSED [ 27%]
02:35:15 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-True] PASSED [ 27%]
02:35:28 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-False] PASSED [ 27%]
02:35:40 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-True] PASSED [ 27%]
02:35:53 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-False] PASSED [ 27%]
02:36:05 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Official] PASSED [ 27%]
02:36:18 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Deprecated] PASSED [ 27%]
02:36:30 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Official] PASSED [ 27%]
02:36:43 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Deprecated] PASSED [ 27%]
02:36:55 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Official] PASSED [ 27%]
02:37:07 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Deprecated] PASSED [ 27%]
02:37:20 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Official] PASSED [ 27%]
02:37:32 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Deprecated] PASSED [ 27%]
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02:38:49 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-True] PASSED [ 28%]
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02:43:58 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-True] PASSED [ 28%]
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02:45:40 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--True] PASSED [ 28%]
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02:46:32 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-True] PASSED [ 29%]
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02:47:23 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-True] PASSED [ 29%]
02:47:48 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-False] PASSED [ 29%]
02:48:14 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-True] PASSED [ 29%]
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02:49:29 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-False] PASSED [ 29%]
02:49:54 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--True] PASSED [ 29%]
02:50:19 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--False] PASSED [ 29%]
02:50:44 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-True] PASSED [ 29%]
02:51:09 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-False] PASSED [ 29%]
02:51:35 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-True] PASSED [ 29%]
02:52:00 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-False] PASSED [ 29%]
02:52:13 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-True] PASSED [ 29%]
02:52:25 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-False] PASSED [ 29%]
02:52:39 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-True] PASSED [ 29%]
02:52:52 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-False] PASSED [ 29%]
02:53:05 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--True] PASSED [ 29%]
02:53:18 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--False] PASSED [ 30%]
02:53:30 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[True] PASSED [ 30%]
02:53:43 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[False] PASSED [ 30%]
02:53:56 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[True] PASSED [ 30%]
02:54:09 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[False] PASSED [ 30%]
02:54:23 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-True] PASSED [ 30%]
02:54:35 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-False] PASSED [ 30%]
02:54:49 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-True] PASSED [ 30%]
02:55:01 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-False] PASSED [ 30%]
02:55:14 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--True] PASSED [ 30%]
02:55:28 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--False] PASSED [ 30%]
02:55:41 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-True] PASSED [ 30%]
02:55:54 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-False] PASSED [ 30%]
02:56:07 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[True] PASSED [ 30%]
02:56:20 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[False] PASSED [ 30%]
02:56:37 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-False] PASSED [ 30%]
02:56:54 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-True] PASSED [ 30%]
02:57:11 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-False] PASSED [ 30%]
02:57:28 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-True] PASSED [ 30%]
02:57:40 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Project] PASSED [ 30%]
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02:58:04 test/integration/clitest/test_import.py::TestImport::testBadTargetArgument[Image] PASSED [ 31%]
02:58:16 test/integration/clitest/test_import.py::TestImport::testBadModelTargetDiscriminator[Dataset] PASSED [ 31%]
02:58:28 test/integration/clitest/test_import.py::TestImport::testBadModelTargetDiscriminator[Screen] PASSED [ 31%]
02:58:41 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ALL] PASSED [ 31%]
02:58:53 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-TRACE] PASSED [ 31%]
02:59:06 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-DEBUG] PASSED [ 31%]
02:59:18 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-INFO] PASSED [ 31%]
02:59:31 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-WARN] PASSED [ 31%]
02:59:43 test/integration/clitest/test_import.py::TestImport::testDebugArgument[None-ERROR] PASSED [ 31%]
02:59:55 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ALL] PASSED [ 31%]
03:00:08 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---TRACE] PASSED [ 31%]
03:00:20 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---DEBUG] PASSED [ 31%]
03:00:33 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---INFO] PASSED [ 31%]
03:00:45 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---WARN] PASSED [ 31%]
03:00:58 test/integration/clitest/test_import.py::TestImport::testDebugArgument[---ERROR] PASSED [ 31%]
03:01:10 test/integration/clitest/test_import.py::TestImport::testImportOutputDefault PASSED [ 31%]
03:01:22 test/integration/clitest/test_import.py::TestImport::testImportOutputYaml PASSED [ 31%]
03:01:35 test/integration/clitest/test_import.py::TestImport::testImportOutputLegacy PASSED [ 31%]
03:01:48 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[1] PASSED [ 31%]
03:02:01 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[2] PASSED [ 32%]
03:02:14 test/integration/clitest/test_import.py::TestImport::testImportOutputDefaultWithScreen[3] PASSED [ 32%]
03:02:29 test/integration/clitest/test_import.py::TestImport::testImportAsRoot PASSED [ 32%]
03:02:43 test/integration/clitest/test_import.py::TestImport::testImportMultiGroup PASSED [ 32%]
03:02:58 test/integration/clitest/test_import.py::TestImport::testImportAsRootMultiGroup PASSED [ 32%]
03:03:10 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image] PASSED [ 32%]
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03:03:35 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--description] PASSED [ 32%]
03:03:47 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-n] PASSED [ 32%]
03:04:00 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-n-x] PASSED [ 32%]
03:04:12 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image-n--description] PASSED [ 32%]
03:04:25 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--name] PASSED [ 32%]
03:04:37 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--name-x] PASSED [ 32%]
03:04:50 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Image--name--description] PASSED [ 32%]
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03:05:29 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--description] PASSED [ 32%]
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03:06:34 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate-n--plate_description] PASSED [ 33%]
03:06:47 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--name] PASSED [ 33%]
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03:07:27 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--name--plate_description] PASSED [ 33%]
03:07:40 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name] PASSED [ 33%]
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03:08:05 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name--description] PASSED [ 33%]
03:08:18 test/integration/clitest/test_import.py::TestImport::testNamingArguments[Plate--plate_name--plate_description] PASSED [ 33%]
03:08:31 test/integration/clitest/test_import.py::TestImport::testNoThumbnails[--no-thumbnails] PASSED [ 33%]
03:08:46 test/integration/clitest/test_import.py::TestImport::testNoThumbnails[--no_thumbnails] PASSED [ 33%]
03:08:58 test/integration/clitest/test_import.py::TestImport::testSkipArguments[] PASSED [ 33%]
03:09:01 test/integration/clitest/test_import.py::TestImport::testSkipArguments[all] PASSED [ 33%]
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03:09:40 test/integration/clitest/test_import.py::TestImport::testSkipArguments[upgrade] PASSED [ 33%]
03:09:53 test/integration/clitest/test_import.py::TestImport::testSymlinkImport PASSED [ 33%]
03:10:05 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Dataset-test.fake--d] PASSED [ 33%]
03:10:17 test/integration/clitest/test_import.py::TestImport::testUnknownTarget[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] PASSED [ 33%]
03:10:30 test/integration/clitest/test_import.py::TestImport::testEncryption[] PASSED [ 34%]
03:10:42 test/integration/clitest/test_import.py::TestImport::testEncryption[--encrypted=false] PASSED [ 34%]
03:10:55 test/integration/clitest/test_import.py::TestImport::testEncryption[--encrypted=true] PASSED [ 34%]
03:10:55 test/integration/clitest/test_import.py::TestImport::testBulk PASSED [ 34%]
03:11:08 test/integration/clitest/test_import.py::TestImport::testParallelUpload PASSED [ 34%]
03:11:23 test/integration/clitest/test_import.py::TestImport::testParallelFileset PASSED [ 34%]
03:11:48 test/integration/clitest/test_import.py::TestImport::testBulkImportLogs PASSED [ 34%]
03:12:05 test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk PASSED [ 34%]
03:12:08 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[active] PASSED [ 34%]
03:12:08 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[discover] PASSED [ 34%]
03:12:08 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[create] PASSED [ 34%]
03:12:08 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[getdn] PASSED [ 34%]
03:12:08 test/integration/clitest/test_ldap.py::TestLDAP::testAdminOnly[setdn] PASSED [ 34%]
03:12:14 test/integration/clitest/test_metadata.py::TestMetadata::test_get_identifiers PASSED [ 34%]
03:12:18 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[False] PASSED [ 34%]
03:12:21 test/integration/clitest/test_metadata.py::TestMetadata::test_get_parents[True] PASSED [ 34%]
03:12:25 test/integration/clitest/test_metadata.py::TestMetadata::test_get_roi_count[0] PASSED [ 34%]
03:12:29 test/integration/clitest/test_metadata.py::TestMetadata::test_get_roi_count[1] PASSED [ 34%]
03:12:33 test/integration/clitest/test_metadata.py::TestMetadata::test_get_original PASSED [ 34%]
03:12:36 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[False] PASSED [ 34%]
03:12:40 test/integration/clitest/test_metadata.py::TestMetadata::test_get_bulkanns[True] PASSED [ 35%]
03:12:44 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[False] PASSED [ 35%]
03:12:47 test/integration/clitest/test_metadata.py::TestMetadata::test_get_measures[True] PASSED [ 35%]
03:12:51 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[False] PASSED [ 35%]
03:12:54 test/integration/clitest/test_metadata.py::TestMetadata::test_get_allanns[True] PASSED [ 35%]
03:13:00 test/integration/clitest/test_metadata.py::TestMetadataControl::test_original PASSED [ 35%]
03:13:04 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[False] PASSED [ 35%]
03:13:08 test/integration/clitest/test_metadata.py::TestMetadataControl::test_bulkanns[True] PASSED [ 35%]
03:13:12 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[False] PASSED [ 35%]
03:13:17 test/integration/clitest/test_metadata.py::TestMetadataControl::test_measures[True] PASSED [ 35%]
03:13:21 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[False] PASSED [ 35%]
03:13:25 test/integration/clitest/test_metadata.py::TestMetadataControl::test_mapanns[True] PASSED [ 35%]
03:13:29 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[False] PASSED [ 35%]
03:13:34 test/integration/clitest/test_metadata.py::TestMetadataControl::test_allanns[True] PASSED [ 35%]
03:13:37 test/integration/clitest/test_metadata.py::TestMetadataControl::test_pixelsize PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_create_from_file PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_create_from_args PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_linkage PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_linkage_via_variables PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_required[input0] PASSED [ 35%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_required[input1] PASSED [ 36%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_required[input2] PASSED [ 36%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_link_annotation PASSED [ 36%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_new_get_and_update PASSED [ 36%]
03:13:40 test/integration/clitest/test_obj.py::TestObj::test_fail_leading_numbers_argument PASSED [ 36%]
03:13:41 test/integration/clitest/test_obj.py::TestObj::test_argument_with_letters_and_numbers PASSED [ 36%]
03:13:41 test/integration/clitest/test_obj.py::TestObj::test_new_and_get_obj PASSED [ 36%]
03:13:44 test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value PASSED [ 36%]
03:13:45 test/integration/clitest/test_obj.py::TestObj::test_get_unknown_and_empty_field PASSED [ 36%]
03:13:45 test/integration/clitest/test_obj.py::TestObj::test_get_fields PASSED [ 36%]
03:13:45 test/integration/clitest/test_obj.py::TestObj::test_get_list_field PASSED [ 36%]
03:13:46 test/integration/clitest/test_obj.py::TestObj::test_list_get PASSED [ 36%]
03:13:46 test/integration/clitest/test_obj.py::TestObj::test_map_mods PASSED [ 36%]
03:13:46 test/integration/clitest/test_obj.py::TestObj::test_nulling PASSED [ 36%]
03:13:46 test/integration/clitest/test_obj.py::TestObj::test_newlines PASSED [ 36%]
03:13:48 test/integration/clitest/test_pyramids.py::TestRemovePyramids::test_removepyramids_admin_only PASSED [ 36%]
03:13:51 test/integration/clitest/test_pyramids.py::TestRemovePyramidsRestrictedAdmin::test_removepyramids_restricted_admin PASSED [ 36%]
03:14:03 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_little_endian PASSED [ 36%]
03:14:14 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_imported_after_future PASSED [ 36%]
03:14:34 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_limit PASSED [ 36%]
03:14:54 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_not_valid_limit PASSED [ 36%]
03:14:54 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_manual SKIPPED [ 37%]
03:15:16 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove__pre_fs_pyramids PASSED [ 37%]
03:15:34 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_big_endian PASSED [ 37%]
03:16:05 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids PASSED [ 37%]
03:16:26 test/integration/clitest/test_pyramids.py::TestRemovePyramidsFullAdmin::test_remove_pyramids_check_thumbnails PASSED [ 37%]
03:16:28 test/integration/clitest/test_script.py::TestScript::testList PASSED [ 37%]
03:16:41 test/integration/clitest/test_script.py::TestScript::testDemo PASSED [ 37%]
03:16:51 test/integration/clitest/test_script.py::TestScript::testFullSession PASSED [ 37%]
03:17:11 test/integration/clitest/test_script.py::TestScript::testReplace PASSED [ 37%]
03:17:12 test/integration/clitest/test_script.py::TestScript::testReplaceOfficial PASSED [ 37%]
03:17:20 test/integration/clitest/test_search.py::TestSearch::test_search_basic PASSED [ 37%]
03:17:26 test/integration/clitest/test_search.py::TestSearch::test_search_wildcard PASSED [ 37%]
03:17:32 test/integration/clitest/test_search.py::TestSearch::test_search_name_field PASSED [ 37%]
03:17:38 test/integration/clitest/test_search.py::TestSearch::test_search_description_field PASSED [ 37%]
03:17:45 test/integration/clitest/test_search.py::TestSearch::test_search_style PASSED [ 37%]
03:17:51 test/integration/clitest/test_search.py::TestSearch::test_search_ids_only PASSED [ 37%]
03:17:57 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data0] PASSED [ 37%]
03:18:03 test/integration/clitest/test_search.py::TestSearch::test_search_acquisition_date[data1] PASSED [ 37%]
03:18:09 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data0] PASSED [ 37%]
03:18:15 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data1] PASSED [ 37%]
03:18:21 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data2] PASSED [ 38%]
03:18:27 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data3] PASSED [ 38%]
03:18:33 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data4] PASSED [ 38%]
03:18:39 test/integration/clitest/test_search.py::TestSearch::test_search_no_parse PASSED [ 38%]
03:18:41 test/integration/clitest/test_search.py::TestSearch::test_search_dataset_acquisition PASSED [ 38%]
03:18:47 test/integration/clitest/test_search.py::TestSearch::test_search_index_by_user PASSED [ 38%]
03:18:51 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True] PASSED [ 38%]
03:18:53 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False] PASSED [ 38%]
03:18:55 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True] PASSED [ 38%]
03:18:58 test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False] PASSED [ 38%]
03:19:07 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----] PASSED [ 38%]
03:19:15 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---] PASSED [ 38%]
03:19:24 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--] PASSED [ 38%]
03:19:33 test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--] PASSED [ 38%]
03:19:35 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True] PASSED [ 38%]
03:19:37 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False] PASSED [ 38%]
03:19:39 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True] PASSED [ 38%]
03:19:41 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False] PASSED [ 38%]
03:19:43 test/integration/clitest/test_sessions.py::TestSessions::testGroup PASSED [ 38%]
03:19:45 test/integration/clitest/test_sessions.py::TestSessions::testTimeout PASSED [ 38%]
03:19:45 test/integration/clitest/test_sessions.py::TestSessions::testFile PASSED [ 39%]
03:19:47 test/integration/clitest/test_sessions.py::TestSessions::testKey PASSED [ 39%]
03:19:49 test/integration/clitest/test_sessions.py::TestSessions::testWho[user] PASSED [ 39%]
03:19:49 test/integration/clitest/test_sessions.py::TestSessions::testWho[root] PASSED [ 39%]
03:19:51 test/integration/clitest/test_sessions.py::TestSessions::test_open PASSED [ 39%]
03:19:53 test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id PASSED [ 39%]
03:19:57 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo PASSED [ 39%]
03:20:02 test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo PASSED [ 39%]
03:20:04 test/integration/clitest/test_sessions.py::TestSessions::test_close PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None-None] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTag[None---name] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description-None] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTag[--description---name] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None-None] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[None---name] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc-None] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testCreateTagset[--desc---name] PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testLoadTag PASSED [ 39%]
03:20:06 test/integration/clitest/test_tag.py::TestTag::testLoadTagset PASSED [ 39%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLink[Image] PASSED [ 39%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLink[Dataset] PASSED [ 40%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLink[Project] PASSED [ 40%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLink[Screen] PASSED [ 40%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLink[Plate] PASSED [ 40%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidObject PASSED [ 40%]
03:20:07 test/integration/clitest/test_tag.py::TestTag::testLinkInvalidTag PASSED [ 40%]
03:20:13 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-admin] PASSED [ 40%]
03:20:17 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-owner] PASSED [ 40%]
03:20:21 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----admin-member] PASSED [ 40%]
03:20:25 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-admin] PASSED [ 40%]
03:20:29 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-owner] PASSED [ 40%]
03:20:33 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----owner-member] PASSED [ 40%]
03:20:37 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-admin] PASSED [ 40%]
03:20:41 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-owner] PASSED [ 40%]
03:20:45 test/integration/clitest/test_tag.py::TestPermissions::testLink[rw-----member-member] PASSED [ 40%]
03:20:49 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-admin] PASSED [ 40%]
03:20:53 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-owner] PASSED [ 40%]
03:20:57 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----admin-member] PASSED [ 40%]
03:21:01 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-admin] PASSED [ 40%]
03:21:05 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-owner] PASSED [ 40%]
03:21:09 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-member] PASSED [ 40%]
03:21:13 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-admin] PASSED [ 41%]
03:21:17 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-owner] PASSED [ 41%]
03:21:21 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-member] PASSED [ 41%]
03:21:25 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-admin] PASSED [ 41%]
03:21:29 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-owner] PASSED [ 41%]
03:21:33 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-member] PASSED [ 41%]
03:21:37 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-admin] PASSED [ 41%]
03:21:41 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-owner] PASSED [ 41%]
03:21:45 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-member] PASSED [ 41%]
03:21:49 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-admin] PASSED [ 41%]
03:21:53 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-owner] PASSED [ 41%]
03:21:57 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-member] PASSED [ 41%]
03:22:01 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-admin] PASSED [ 41%]
03:22:05 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-owner] PASSED [ 41%]
03:22:09 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-member] PASSED [ 41%]
03:22:13 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-admin] PASSED [ 41%]
03:22:17 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-owner] PASSED [ 41%]
03:22:21 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-member] PASSED [ 41%]
03:22:25 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-admin] PASSED [ 41%]
03:22:29 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-owner] PASSED [ 41%]
03:22:33 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-member] PASSED [ 42%]
03:22:35 test/integration/clitest/test_tag.py::TestTagList::testList[] PASSED [ 42%]
03:22:35 test/integration/clitest/test_tag.py::TestTagList::testList[--nopage] PASSED [ 42%]
03:22:35 test/integration/clitest/test_tag.py::TestTagList::testListSets[] PASSED [ 42%]
03:22:35 test/integration/clitest/test_tag.py::TestTagList::testListSets[--nopage] PASSED [ 42%]
03:22:38 test/integration/clitest/test_upload.py::TestUpload::testUploadSingleFile PASSED [ 42%]
03:22:38 test/integration/clitest/test_upload.py::TestUpload::testUploadMultipleFiles PASSED [ 42%]
03:22:38 test/integration/clitest/test_upload.py::TestUpload::testUploadBadFile PASSED [ 42%]
03:22:53 test/integration/clitest/test_user.py::TestUser::testList[None-None] PASSED [ 42%]
03:23:03 test/integration/clitest/test_user.py::TestUser::testList[None-id] PASSED [ 42%]
03:23:12 test/integration/clitest/test_user.py::TestUser::testList[None-login] PASSED [ 42%]
03:23:22 test/integration/clitest/test_user.py::TestUser::testList[None-first-name] PASSED [ 42%]
03:23:32 test/integration/clitest/test_user.py::TestUser::testList[None-last-name] PASSED [ 42%]
03:23:42 test/integration/clitest/test_user.py::TestUser::testList[None-email] PASSED [ 42%]
03:23:52 test/integration/clitest/test_user.py::TestUser::testList[count-None] PASSED [ 42%]
03:24:02 test/integration/clitest/test_user.py::TestUser::testList[count-id] PASSED [ 42%]
03:24:12 test/integration/clitest/test_user.py::TestUser::testList[count-login] PASSED [ 42%]
03:24:21 test/integration/clitest/test_user.py::TestUser::testList[count-first-name] PASSED [ 42%]
03:24:32 test/integration/clitest/test_user.py::TestUser::testList[count-last-name] PASSED [ 42%]
03:24:42 test/integration/clitest/test_user.py::TestUser::testList[count-email] PASSED [ 42%]
03:24:53 test/integration/clitest/test_user.py::TestUser::testList[long-None] PASSED [ 43%]
03:25:03 test/integration/clitest/test_user.py::TestUser::testList[long-id] PASSED [ 43%]
03:25:13 test/integration/clitest/test_user.py::TestUser::testList[long-login] PASSED [ 43%]
03:25:23 test/integration/clitest/test_user.py::TestUser::testList[long-first-name] PASSED [ 43%]
03:25:33 test/integration/clitest/test_user.py::TestUser::testList[long-last-name] PASSED [ 43%]
03:25:43 test/integration/clitest/test_user.py::TestUser::testList[long-email] PASSED [ 43%]
03:25:46 test/integration/clitest/test_user.py::TestUser::testListWithStyles[None] PASSED [ 43%]
03:25:50 test/integration/clitest/test_user.py::TestUser::testListWithStyles[sql] PASSED [ 43%]
03:25:53 test/integration/clitest/test_user.py::TestUser::testListWithStyles[csv] PASSED [ 43%]
03:25:56 test/integration/clitest/test_user.py::TestUser::testListWithStyles[plain] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testListWithStyles[json] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoNoArgument PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoArgument[id] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoArgument[omeName] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-id] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-name] PASSED [ 43%]
03:26:00 test/integration/clitest/test_user.py::TestUser::testInfoInvalidUser PASSED [ 43%]
03:26:03 test/integration/clitest/test_user.py::TestUser::testListGroupsNoArgument PASSED [ 43%]
03:26:07 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[id] PASSED [ 43%]
03:26:09 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[omeName] PASSED [ 43%]
03:26:12 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-id] PASSED [ 44%]
03:26:15 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-name] PASSED [ 44%]
03:26:15 test/integration/clitest/test_user.py::TestUser::testListGroupsInvalidArgument PASSED [ 44%]
03:26:19 test/integration/clitest/test_user.py::TestUser::testEmail[None] PASSED [ 44%]
03:26:22 test/integration/clitest/test_user.py::TestUser::testEmail[-1] PASSED [ 44%]
03:26:26 test/integration/clitest/test_user.py::TestUser::testEmail[--one] PASSED [ 44%]
03:26:32 test/integration/clitest/test_user.py::TestUser::testPassword[True] PASSED [ 44%]
03:26:32 test/integration/clitest/test_user.py::TestUser::testPassword[False] PASSED [ 44%]
03:26:32 test/integration/clitest/test_user.py::TestUser::testAddAdminOnly PASSED [ 44%]
03:26:40 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---id] PASSED [ 44%]
03:26:42 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---name] PASSED [ 44%]
03:26:44 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---id] PASSED [ 44%]
03:26:46 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---name] PASSED [ 44%]
03:26:49 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---id] PASSED [ 44%]
03:26:51 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---name] PASSED [ 44%]
03:26:53 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---id] PASSED [ 44%]
03:26:55 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---name] PASSED [ 44%]
03:26:57 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---id] PASSED [ 44%]
03:26:59 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---name] PASSED [ 44%]
03:27:01 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---id] PASSED [ 44%]
03:27:03 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---name] PASSED [ 44%]
03:27:06 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---id] PASSED [ 45%]
03:27:08 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---name] PASSED [ 45%]
03:27:09 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---id] PASSED [ 45%]
03:27:12 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---name] PASSED [ 45%]
03:27:14 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---id] PASSED [ 45%]
03:27:16 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---name] PASSED [ 45%]
03:27:18 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---id] PASSED [ 45%]
03:27:20 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---name] PASSED [ 45%]
03:27:22 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---id] PASSED [ 45%]
03:27:25 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---name] PASSED [ 45%]
03:27:26 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---id] PASSED [ 45%]
03:27:29 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---name] PASSED [ 45%]
03:27:31 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---id] PASSED [ 45%]
03:27:33 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---name] PASSED [ 45%]
03:27:35 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---id] PASSED [ 45%]
03:27:37 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---name] PASSED [ 45%]
03:27:39 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---id] PASSED [ 45%]
03:27:41 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---name] PASSED [ 45%]
03:27:43 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---id] PASSED [ 45%]
03:27:46 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---name] PASSED [ 45%]
03:27:48 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---id] PASSED [ 46%]
03:27:50 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---name] PASSED [ 46%]
03:27:52 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---id] PASSED [ 46%]
03:27:54 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---name] PASSED [ 46%]
03:27:56 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---id] PASSED [ 46%]
03:27:59 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---name] PASSED [ 46%]
03:28:01 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---id] PASSED [ 46%]
03:28:03 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---name] PASSED [ 46%]
03:28:05 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---id] PASSED [ 46%]
03:28:07 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---name] PASSED [ 46%]
03:28:09 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---id] PASSED [ 46%]
03:28:11 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---name] PASSED [ 46%]
03:28:13 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---id] PASSED [ 46%]
03:28:15 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---name] PASSED [ 46%]
03:28:17 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---id] PASSED [ 46%]
03:28:19 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---name] PASSED [ 46%]
03:28:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None-None] PASSED [ 46%]
03:28:19 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None--m] PASSED [ 46%]
03:28:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None---middlename] PASSED [ 46%]
03:28:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e-None] PASSED [ 46%]
03:28:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e--m] PASSED [ 47%]
03:28:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e---middlename] PASSED [ 47%]
03:28:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email-None] PASSED [ 47%]
03:28:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email--m] PASSED [ 47%]
03:28:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email---middlename] PASSED [ 47%]
03:28:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None-None] PASSED [ 47%]
03:28:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None--m] PASSED [ 47%]
03:28:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None---middlename] PASSED [ 47%]
03:28:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e-None] PASSED [ 47%]
03:28:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e--m] PASSED [ 47%]
03:28:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e---middlename] PASSED [ 47%]
03:28:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email-None] PASSED [ 47%]
03:28:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email--m] PASSED [ 47%]
03:28:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email---middlename] PASSED [ 47%]
03:28:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None-None] PASSED [ 47%]
03:28:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None--m] PASSED [ 47%]
03:28:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None---middlename] PASSED [ 47%]
03:28:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e-None] PASSED [ 47%]
03:28:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e--m] PASSED [ 47%]
03:28:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e---middlename] PASSED [ 47%]
03:28:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email-None] PASSED [ 48%]
03:28:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email--m] PASSED [ 48%]
03:28:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email---middlename] PASSED [ 48%]
03:28:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None-None] PASSED [ 48%]
03:28:27 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None--m] PASSED [ 48%]
03:28:28 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None---middlename] PASSED [ 48%]
03:28:29 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e-None] PASSED [ 48%]
03:28:29 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e--m] PASSED [ 48%]
03:28:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e---middlename] PASSED [ 48%]
03:28:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email-None] PASSED [ 48%]
03:28:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email--m] PASSED [ 48%]
03:28:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email---middlename] PASSED [ 48%]
03:28:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None-None] PASSED [ 48%]
03:28:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None--m] PASSED [ 48%]
03:28:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None---middlename] PASSED [ 48%]
03:28:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e-None] PASSED [ 48%]
03:28:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e--m] PASSED [ 48%]
03:28:37 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e---middlename] PASSED [ 48%]
03:28:38 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email-None] PASSED [ 48%]
03:28:39 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email--m] PASSED [ 48%]
03:28:39 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email---middlename] PASSED [ 48%]
03:28:40 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None-None] PASSED [ 49%]
03:28:42 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None--m] PASSED [ 49%]
03:28:42 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None---middlename] PASSED [ 49%]
03:28:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e-None] PASSED [ 49%]
03:28:44 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e--m] PASSED [ 49%]
03:28:45 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e---middlename] PASSED [ 49%]
03:28:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email-None] PASSED [ 49%]
03:28:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email--m] PASSED [ 49%]
03:28:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email---middlename] PASSED [ 49%]
03:28:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None-None] PASSED [ 49%]
03:28:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None--m] PASSED [ 49%]
03:28:50 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None---middlename] PASSED [ 49%]
03:28:51 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e-None] PASSED [ 49%]
03:28:52 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e--m] PASSED [ 49%]
03:28:53 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e---middlename] PASSED [ 49%]
03:28:54 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email-None] PASSED [ 49%]
03:28:55 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email--m] PASSED [ 49%]
03:28:56 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email---middlename] PASSED [ 49%]
03:28:57 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None-None] PASSED [ 49%]
03:28:58 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None--m] PASSED [ 49%]
03:28:59 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None---middlename] PASSED [ 50%]
03:28:59 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e-None] PASSED [ 50%]
03:29:00 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e--m] PASSED [ 50%]
03:29:02 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e---middlename] PASSED [ 50%]
03:29:03 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email-None] PASSED [ 50%]
03:29:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email--m] PASSED [ 50%]
03:29:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email---middlename] PASSED [ 50%]
03:29:05 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None-None] PASSED [ 50%]
03:29:06 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None--m] PASSED [ 50%]
03:29:07 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None---middlename] PASSED [ 50%]
03:29:08 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e-None] PASSED [ 50%]
03:29:09 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e--m] PASSED [ 50%]
03:29:11 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e---middlename] PASSED [ 50%]
03:29:12 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email-None] PASSED [ 50%]
03:29:12 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email--m] PASSED [ 50%]
03:29:14 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email---middlename] PASSED [ 50%]
03:29:14 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[id] PASSED [ 50%]
03:29:15 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[name] PASSED [ 50%]
03:29:15 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-id] PASSED [ 50%]
03:29:16 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-name] PASSED [ 50%]
03:29:16 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True-None] PASSED [ 51%]
03:29:17 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True--P] PASSED [ 51%]
03:29:17 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True---userpassword] PASSED [ 51%]
03:29:18 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False-None] PASSED [ 51%]
03:29:18 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False--P] PASSED [ 51%]
03:29:19 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False---userpassword] PASSED [ 51%]
03:29:19 test/integration/clitest/test_user.py::TestUserRoot::testAddNoPassword PASSED [ 51%]
03:29:28 test/integration/clitest/test_user.py::TestUserRoot::testPassword[True] PASSED [ 51%]
03:29:30 test/integration/clitest/test_user.py::TestUserRoot::testPassword[False] PASSED [ 51%]
03:29:33 test/integration/fstest/test_rename.py::TestRename::test_dir PASSED [ 51%]
03:29:42 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data0] PASSED [ 51%]
03:29:51 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data1] PASSED [ 51%]
03:30:00 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data2] PASSED [ 51%]
03:30:11 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data3] PASSED [ 51%]
03:30:21 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data4] PASSED [ 51%]
03:30:25 test/integration/fstest/test_rename.py::TestRename::test_rename_annotation PASSED [ 51%]
03:30:26 test/integration/fstest/test_rename.py::TestRename::test_prep_and_delete PASSED [ 51%]
03:30:32 test/integration/gatewaytest/test_annotation.py::testSameOwner PASSED [ 51%]
03:30:33 test/integration/gatewaytest/test_annotation.py::testCommentAnnotation PASSED [ 51%]
03:30:34 test/integration/gatewaytest/test_annotation.py::testNonDefGroupAnnotation PASSED [ 51%]
03:30:36 test/integration/gatewaytest/test_annotation.py::testTimestampAnnotation PASSED [ 52%]
03:30:37 test/integration/gatewaytest/test_annotation.py::testBooleanAnnotation PASSED [ 52%]
03:30:38 test/integration/gatewaytest/test_annotation.py::testLongAnnotation PASSED [ 52%]
03:30:40 test/integration/gatewaytest/test_annotation.py::testMapAnnotation PASSED [ 52%]
03:30:41 test/integration/gatewaytest/test_annotation.py::testDualLinkedAnnotation PASSED [ 52%]
03:30:42 test/integration/gatewaytest/test_annotation.py::testListAnnotations PASSED [ 52%]
03:30:44 test/integration/gatewaytest/test_annotation.py::testFileAnnotation PASSED [ 52%]
03:30:45 test/integration/gatewaytest/test_annotation.py::testFileAnnotationNoName PASSED [ 52%]
03:30:48 test/integration/gatewaytest/test_annotation.py::testFileAnnotationSpeed PASSED [ 52%]
03:30:49 test/integration/gatewaytest/test_annotation.py::testFileAnnNonDefaultGroup PASSED [ 52%]
03:30:50 test/integration/gatewaytest/test_annotation.py::testUnlinkAnnotation PASSED [ 52%]
03:30:52 test/integration/gatewaytest/test_annotation.py::testAnnotationCount PASSED [ 52%]
03:30:53 test/integration/gatewaytest/test_chgrp.py::testImageChgrp PASSED [ 52%]
03:30:55 test/integration/gatewaytest/test_chgrp.py::testDatasetChgrp PASSED [ 52%]
03:30:57 test/integration/gatewaytest/test_chgrp.py::testPDIChgrp PASSED [ 52%]
03:30:58 test/integration/gatewaytest/test_chgrp.py::testTwoDatasetsChgrpToProject PASSED [ 52%]
03:31:00 test/integration/gatewaytest/test_chgrp.py::testMultiDatasetDoAll PASSED [ 52%]
03:31:03 test/integration/gatewaytest/test_chmod.py::TestChmodGroup::testChmod PASSED [ 52%]
03:31:13 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadOnly PASSED [ 52%]
03:31:15 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadAnnotate PASSED [ 52%]
03:31:16 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testGroupMinusOne PASSED [ 52%]
03:31:18 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadWrite PASSED [ 53%]
03:31:20 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testDelete8723 PASSED [ 53%]
03:31:24 test/integration/gatewaytest/test_chmod.py::TestManualCreateEdit::testReadOnly PASSED [ 53%]
03:31:26 test/integration/gatewaytest/test_chmod.py::Test8800::testWithBlitzWrappers PASSED [ 53%]
03:31:28 test/integration/gatewaytest/test_chmod.py::Test8800::testWithoutWrappers PASSED [ 53%]
03:31:32 test/integration/gatewaytest/test_chmod.py::TestDefaultSetup::testAuthorCanEdit PASSED [ 53%]
03:31:39 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_project PASSED [ 53%]
03:31:44 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_pdi PASSED [ 53%]
03:31:46 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[foo] PASSED [ 53%]
03:31:49 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[False] PASSED [ 53%]
03:31:51 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[false] PASSED [ 53%]
03:31:53 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[True] PASSED [ 53%]
03:31:55 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[true] PASSED [ 53%]
03:31:58 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[] PASSED [ 53%]
03:32:00 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[None] PASSED [ 53%]
03:32:07 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMultiProcessSession PASSED [ 53%]
03:34:17 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose ERROR [ 53%]
03:36:28 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects ERROR [ 53%]
03:36:28 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testCloseSession PASSED [ 53%]
03:36:28 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMiscellaneous PASSED [ 53%]
03:36:29 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClient PASSED [ 54%]
03:36:29 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientNoSessionWithIdentity PASSED [ 54%]
03:36:30 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientSessionWithoutIdentity PASSED [ 54%]
03:36:30 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSessionId PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectWithSessionId PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithSecureClient PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUnsecureClient PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[None] PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[False] PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[True] PASSED [ 54%]
03:36:31 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureMisMatch PASSED [ 54%]
03:36:32 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testHost PASSED [ 54%]
03:36:34 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsUnwrapped PASSED [ 54%]
03:36:34 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjects PASSED [ 54%]
03:36:34 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsWait PASSED [ 54%]
03:36:34 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsDryRun PASSED [ 54%]
03:36:34 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteAnnotatedFileAnnotation PASSED [ 54%]
03:36:35 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect PASSED [ 54%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testCountArchivedFiles PASSED [ 54%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testCountFilesetFiles PASSED [ 54%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testCountImportedImageFiles PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfo PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfoWithAnnotations PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFiles PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFilesInfo PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfo PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoWithAnnotations PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultiple PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultipleWithAnnotations PASSED [ 55%]
03:36:37 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFileset PASSED [ 55%]
03:36:38 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFilePaths PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountArchivedFiles PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountFilesetFiles PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountImportedImageFiles PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedFilesInfo PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFiles PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFilesInfo PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfo PASSED [ 55%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfoMultiple PASSED [ 56%]
03:36:40 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFileset PASSED [ 56%]
03:36:41 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFilePaths PASSED [ 56%]
03:36:43 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteAnnotation PASSED [ 56%]
03:36:44 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteImage PASSED [ 56%]
03:36:46 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testIllegalObjTypeInt PASSED [ 56%]
03:36:46 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeUnicode PASSED [ 56%]
03:36:46 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeString PASSED [ 56%]
03:36:46 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindProject PASSED [ 56%]
03:38:55 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter ERROR [ 56%]
03:38:57 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindAnnotation PASSED [ 56%]
03:39:01 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testSearchObjects PASSED [ 56%]
03:39:01 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListProjects PASSED [ 56%]
03:39:01 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testPagination PASSED [ 56%]
03:39:01 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetDatasetsByProject PASSED [ 56%]
03:39:07 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[True] PASSED [ 56%]
03:39:09 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[False] PASSED [ 56%]
03:39:09 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListColleagues PASSED [ 56%]
03:39:12 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testFindExperimenterWithGroups PASSED [ 56%]
03:39:17 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[True] PASSED [ 56%]
03:39:22 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[False] PASSED [ 56%]
03:39:25 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimenter PASSED [ 57%]
03:41:35 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations ERROR [ 57%]
03:43:46 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage ERROR [ 57%]
03:45:57 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] ERROR [ 57%]
03:48:08 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] ERROR [ 57%]
03:50:19 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] ERROR [ 57%]
03:52:30 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] ERROR [ 57%]
03:52:30 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetProject PASSED [ 57%]
03:54:41 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal ERROR [ 57%]
03:54:42 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-True] PASSED [ 57%]
03:54:43 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-False] PASSED [ 57%]
03:54:43 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-True] PASSED [ 57%]
03:54:44 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-False] PASSED [ 57%]
03:54:44 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testOrderById PASSED [ 57%]
03:54:44 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] FAILED [ 57%]
03:54:45 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] FAILED [ 57%]
03:54:45 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] FAILED [ 57%]
03:54:45 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] FAILED [ 57%]
03:54:46 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] FAILED [ 57%]
03:54:49 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsLeader PASSED [ 57%]
03:54:50 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsMember PASSED [ 58%]
03:54:53 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsMemberOf PASSED [ 58%]
03:54:53 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwner PASSED [ 58%]
03:54:54 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMember PASSED [ 58%]
03:54:54 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated PASSED [ 58%]
03:54:56 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated PASSED [ 58%]
03:54:59 test/integration/gatewaytest/test_get_objects.py::TestListParents::testSupportedObjects PASSED [ 58%]
03:55:01 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsPDI PASSED [ 58%]
03:55:04 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsSPW PASSED [ 58%]
03:55:06 test/integration/gatewaytest/test_get_objects.py::TestListParents::testExperimenterListParents PASSED [ 58%]
03:55:06 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testColorHolder PASSED [ 58%]
03:55:06 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testOmeroType PASSED [ 58%]
03:55:06 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testSplitHTMLColor PASSED [ 58%]
03:57:17 test/integration/gatewaytest/test_image.py::TestImage::testThumbnail ERROR [ 58%]
03:59:28 test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet ERROR [ 58%]
04:01:39 test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels ERROR [ 58%]
04:03:50 test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel ERROR [ 58%]
04:06:01 test/integration/gatewaytest/test_image.py::TestImage::testLinePlots ERROR [ 58%]
04:08:13 test/integration/gatewaytest/test_image.py::TestImage::testProjections ERROR [ 58%]
04:10:24 test/integration/gatewaytest/test_image.py::TestImage::testProperties ERROR [ 58%]
04:12:35 test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits ERROR [ 59%]
04:14:46 test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue ERROR [ 59%]
04:16:57 test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits ERROR [ 59%]
04:19:08 test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits ERROR [ 59%]
04:21:19 test/integration/gatewaytest/test_image.py::TestImage::testShortname ERROR [ 59%]
04:23:30 test/integration/gatewaytest/test_image.py::TestImage::testImageDate ERROR [ 59%]
04:25:41 test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal ERROR [ 59%]
04:27:53 test/integration/gatewaytest/test_image.py::TestImage::testExport ERROR [ 59%]
04:30:03 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion ERROR [ 59%]
04:32:14 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution ERROR [ 59%]
04:34:25 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution ERROR [ 59%]
04:36:36 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView ERROR [ 59%]
04:38:49 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size ERROR [ 59%]
04:38:50 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDate PASSED [ 59%]
04:38:50 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDateNoAcquisitionDate PASSED [ 59%]
04:38:50 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testSimpleMarshal PASSED [ 59%]
04:38:53 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelLabel PASSED [ 59%]
04:38:54 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelEmissionWaveLabel PASSED [ 59%]
04:38:55 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelNoLabel PASSED [ 59%]
04:38:56 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testThrowException PASSED [ 59%]
04:38:56 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testPrepareRenderingEngine PASSED [ 60%]
04:38:57 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannels PASSED [ 60%]
04:38:57 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannelsNoRe PASSED [ 60%]
04:38:58 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetRdefId PASSED [ 60%]
04:39:03 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_update_admin_privileges PASSED [ 60%]
04:39:09 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_full_admin_privileges PASSED [ 60%]
04:41:19 test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore ERROR [ 60%]
04:43:30 test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo ERROR [ 60%]
04:45:41 test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType ERROR [ 60%]
04:47:52 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile ERROR [ 60%]
04:50:03 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane ERROR [ 60%]
04:52:14 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane ERROR [ 60%]
04:54:25 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose ERROR [ 60%]
04:56:37 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth ERROR [ 60%]
04:58:49 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram ERROR [ 60%]
04:58:51 test/integration/gatewaytest/test_plate_wrapper.py::TestPlateWrapper::testGetGridSize PASSED [ 60%]
05:01:03 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault ERROR [ 60%]
05:03:14 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized ERROR [ 60%]
05:05:25 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows ERROR [ 60%]
05:07:36 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax ERROR [ 60%]
05:09:47 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave ERROR [ 60%]
05:11:59 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy ERROR [ 61%]
05:14:09 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions ERROR [ 61%]
05:16:20 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs ERROR [ 61%]
05:18:31 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults ERROR [ 61%]
05:20:42 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings ERROR [ 61%]
05:22:53 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid ERROR [ 61%]
05:25:05 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk ERROR [ 61%]
05:27:16 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE ERROR [ 61%]
05:29:27 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE ERROR [ 61%]
05:31:38 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE ERROR [ 61%]
05:33:49 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] ERROR [ 61%]
05:36:00 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] ERROR [ 61%]
05:38:11 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService ERROR [ 61%]
05:40:22 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService ERROR [ 61%]
05:42:34 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE ERROR [ 61%]
05:42:36 test/integration/gatewaytest/test_search_objects.py::TestGetObject::testSearchObjects PASSED [ 61%]
05:42:38 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAuthor PASSED [ 61%]
05:42:40 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAdmin PASSED [ 61%]
05:42:44 test/integration/gatewaytest/test_services.py::TestTables::testTableRead PASSED [ 61%]
05:42:49 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_16 PASSED [ 61%]
05:42:51 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_96 PASSED [ 62%]
05:42:54 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_16 PASSED [ 62%]
05:42:56 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_96 PASSED [ 62%]
05:42:59 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_16 PASSED [ 62%]
05:43:02 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_96 PASSED [ 62%]
05:43:04 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_16 PASSED [ 62%]
05:43:06 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_96 PASSED [ 62%]
05:43:09 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_16 PASSED [ 62%]
05:43:12 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_96 PASSED [ 62%]
05:43:14 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_16 PASSED [ 62%]
05:43:17 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_96 PASSED [ 62%]
05:43:19 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_16 PASSED [ 62%]
05:43:21 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_96 PASSED [ 62%]
05:43:24 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_16 PASSED [ 62%]
05:43:26 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_96 PASSED [ 62%]
05:43:31 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_16 PASSED [ 62%]
05:43:36 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_96 PASSED [ 62%]
05:43:40 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_16 PASSED [ 62%]
05:43:45 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_96 PASSED [ 62%]
05:43:50 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_16 PASSED [ 62%]
05:43:54 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_96 PASSED [ 63%]
05:43:59 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_16 PASSED [ 63%]
05:44:04 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_96 PASSED [ 63%]
05:44:05 test/integration/gatewaytest/test_user.py::TestUser::testUsers PASSED [ 63%]
05:46:14 test/integration/gatewaytest/test_user.py::TestUser::testSaveAs FAILED [ 63%]
05:46:17 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupSave PASSED [ 63%]
05:46:28 test/integration/gatewaytest/test_user.py::TestUser::testGroupOverObjPermissions PASSED [ 63%]
05:48:38 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped ERROR [ 63%]
05:48:39 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testProjectWrapper PASSED [ 63%]
05:50:49 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper ERROR [ 63%]
05:50:49 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testExperimenterWrapper PASSED [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper ERROR [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperGetFileInChunks PASSED [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObj PASSED [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjContextManager PASSED [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjMultiple PASSED [ 63%]
05:53:00 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testSetters PASSED [ 63%]
05:53:01 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOther PASSED [ 63%]
05:53:04 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query PASSED [ 63%]
05:53:04 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query_duplicate PASSED [ 63%]
05:53:04 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_update_existing_mapann PASSED [ 64%]
05:53:06 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_local PASSED [ 64%]
05:53:06 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_remote PASSED [ 64%]
05:53:18 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates] PASSED [ 64%]
05:53:23 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Plate2Wells] PASSED [ 64%]
05:53:27 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images] PASSED [ 64%]
05:53:31 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing] PASSED [ 64%]
05:53:40 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset101Images] PASSED [ 64%]
05:53:47 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Project2Datasets] PASSED [ 64%]
05:53:51 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-GZIP] PASSED [ 64%]
05:53:52 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates] PASSED [ 64%]
05:53:52 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Plate2Wells] PASSED [ 64%]
05:53:53 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images] PASSED [ 64%]
05:53:53 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing] PASSED [ 64%]
05:53:58 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset101Images] PASSED [ 64%]
05:53:59 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Project2Datasets] PASSED [ 64%]
05:54:00 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-GZIP] PASSED [ 64%]
05:54:00 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates] PASSED [ 64%]
05:54:01 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Plate2Wells] PASSED [ 64%]
05:54:01 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images] PASSED [ 64%]
05:54:02 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing] PASSED [ 64%]
05:54:04 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset101Images] PASSED [ 65%]
05:54:04 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Project2Datasets] PASSED [ 65%]
05:54:05 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-GZIP] PASSED [ 65%]
05:54:10 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs] PASSED [ 65%]
05:54:15 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs2] PASSED [ 65%]
05:54:20 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsUnavailableHeader PASSED [ 65%]
05:54:24 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsFail PASSED [ 65%]
05:54:36 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[None] PASSED [ 65%]
05:54:48 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:54:59 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/mapr/gene] PASSED [ 65%]
05:55:11 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[None] PASSED [ 65%]
05:55:23 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:55:36 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/mapr/gene] PASSED [ 65%]
05:55:43 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-None] PASSED [ 65%]
05:55:50 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:55:56 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
05:56:04 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-None] PASSED [ 65%]
05:56:10 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
05:56:17 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
05:56:23 test/integration/metadata/test_populate.py::TestPopulateRois::testPopulateRoisPlate PASSED [ 65%]
05:56:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[yaml] PASSED [ 66%]
05:56:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[Yml] PASSED [ 66%]
05:56:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[json] PASSED [ 66%]
05:56:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[JS] PASSED [ 66%]
05:56:26 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format0] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format1] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format2] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format0] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format1] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format2] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-True] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-False] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-True] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-False] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_fromstring PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_invalidtype PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[json] PASSED [ 66%]
05:56:27 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[yaml] PASSED [ 66%]
05:56:29 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition PASSED [ 66%]
05:56:30 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript PASSED [ 66%]
05:56:48 test/integration/scriptstest/test_cli.py::TestCLI::testCLI PASSED [ 67%]
05:56:51 test/integration/scriptstest/test_coverage.py::TestCoverage::testGetScriptWithDetails PASSED [ 67%]
05:57:01 test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript PASSED [ 67%]
05:57:01 test/integration/scriptstest/test_coverage.py::TestCoverage::testUserCantUploadOfficalScript PASSED [ 67%]
05:57:22 test/integration/scriptstest/test_inputs.py::TestInputs::testInputs PASSED [ 67%]
05:57:26 test/integration/scriptstest/test_ping.py::TestPing::testPingViaISCript PASSED [ 67%]
05:57:27 test/integration/scriptstest/test_ping.py::TestPing::testPingParametersViaISCript PASSED [ 67%]
05:57:29 test/integration/scriptstest/test_ping.py::TestPing::testPingStdout PASSED [ 67%]
05:57:36 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdown PASSED [ 67%]
05:57:37 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdownOneway PASSED [ 67%]
05:57:38 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetResultsBeforeFinished PASSED [ 67%]
05:57:39 test/integration/scriptstest/test_ping.py::TestPing::testProcessorExpires PASSED [ 67%]
05:57:40 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetJob PASSED [ 67%]
05:57:41 test/integration/scriptstest/test_ping.py::TestPing::testProcessorStop PASSED [ 67%]
05:57:42 test/integration/scriptstest/test_ping.py::TestPing::testProcessorDetach PASSED [ 67%]
05:58:00 test/integration/scriptstest/test_rand.py::TestRand::testRand PASSED [ 67%]
05:58:02 test/integration/scriptstest/test_repo.py::TestScriptRepo::testScriptRepo PASSED [ 67%]
05:58:02 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetOfficialScripts PASSED [ 67%]
05:58:12 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetUserScripts PASSED [ 67%]
05:58:12 test/integration/scriptstest/test_repo.py::TestScriptRepo::testCantUndulyLoadScriptRepoFromUuid PASSED [ 67%]
05:58:12 test/integration/scriptstest/test_repo.py::TestScriptRepo::testMultipleScriptPathsNotSupported PASSED [ 68%]
05:58:12 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaOfficialScriptShowsUpInRepo PASSED [ 68%]
05:58:12 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaNonOfficialScriptDoesntShowUpInRepo PASSED [ 68%]
05:58:17 test/integration/scriptstest/test_roi_handling_utils.py::TestRoiHandlingUtils::test_get_line_data PASSED [ 68%]
05:58:24 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_split_image PASSED [ 68%]
05:58:27 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_to_image PASSED [ 68%]
05:58:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_convert_numpy_array PASSED [ 68%]
05:58:33 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f925a9dda60>
05:58:33 Traceback (most recent call last):
05:58:33 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:58:33 self.close()
05:58:33 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:58:33 unlink(self.name)
05:58:33 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp38vkrva5.tiff'
05:58:33 PASSED [ 68%]
05:58:36 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f925a9dda60>
05:58:36 Traceback (most recent call last):
05:58:36 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
05:58:36 self.close()
05:58:36 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
05:58:36 unlink(self.name)
05:58:36 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpfzniel1b.foo'
05:58:36 PASSED [ 68%]
05:58:39 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-tiff] PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-foo] PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[] PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[text/x-python] PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_calc_sha1 PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_file PASSED [ 68%]
05:58:42 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_file PASSED [ 68%]
05:58:45 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_get_objects PASSED [ 68%]
05:58:47 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_plane PASSED [ 68%]
05:58:50 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane_by_row PASSED [ 68%]
05:58:53 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane PASSED [ 68%]
05:58:55 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testCreateAllColumns_4_4_5 PASSED [ 68%]
05:58:57 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testAllColumns_4_4_5 PASSED [ 69%]
05:58:58 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testMetadataException PASSED [ 69%]
05:59:01 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testCreateAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
05:59:02 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
05:59:05 test/integration/tablestest/test_populate_metadata.py::TestPopulateMetadata::testPopulateMetadataPlate PASSED [ 69%]
05:59:07 test/integration/tablestest/test_service.py::TestTables::testBlankTable PASSED [ 69%]
05:59:08 test/integration/tablestest/test_service.py::TestTables::testUpdate PASSED [ 69%]
05:59:08 test/integration/tablestest/test_service.py::TestTables::testTicket2175 PASSED [ 69%]
05:59:08 test/integration/tablestest/test_service.py::TestTables::testMask PASSED [ 69%]
05:59:08 test/integration/tablestest/test_service.py::TestTables::test2855MetadataMethods PASSED [ 69%]
05:59:12 test/integration/tablestest/test_service.py::TestTables::test2910 PASSED [ 69%]
05:59:15 test/integration/tablestest/test_service.py::TestTables::testDelete PASSED [ 69%]
05:59:15 test/integration/tablestest/test_service.py::TestTables::test3714GetWhereListVars PASSED [ 69%]
05:59:15 test/integration/tablestest/test_service.py::TestTables::test4000TableRead PASSED [ 69%]
05:59:17 test/integration/tablestest/test_service.py::TestTables::testCallContext PASSED [ 69%]
05:59:17 test/integration/tablestest/test_service.py::TestTables::testGetHeaders PASSED [ 69%]
05:59:22 test/integration/tablestest/test_service.py::TestTables::test10049openTableUnreadable PASSED [ 69%]
05:59:22 test/integration/tablestest/test_service.py::TestTables::test9971checkStringLength PASSED [ 69%]
05:59:22 test/integration/tablestest/test_service.py::TestTables::testArrayColumn PASSED [ 69%]
05:59:22 test/integration/tablestest/test_service.py::TestTables::testArrayColumnSize1 PASSED [ 69%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::test10431uninitialisedTableReadWrite PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::test12606fileSizeCheck PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::testCantWriteInternalMetadata[data0] PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::testCantWriteInternalMetadata[data1] PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::testCanWriteAlmostInternalMetadata[data0] PASSED [ 70%]
05:59:23 test/integration/tablestest/test_service.py::TestTables::testCanWriteAlmostInternalMetadata[data1] PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testCanReadInternalMetadata PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testColumnSpaceNames PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersSlice PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersReadCoordinates PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testIncludeRowNumbersRead PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testSliceOrdering PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testReadCoordinatesOrdering PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testSliceEmptyInput PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testReadCoordinatesInvalidInput PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testReadInvalidInput PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testSliceInvalidInput PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testReadStartEnd PASSED [ 70%]
05:59:24 test/integration/tablestest/test_service.py::TestTables::testReadStartGreaterThanEnd PASSED [ 70%]
05:59:25 test/integration/tablestest/test_service.py::TestTables::testAddData PASSED [ 71%]
05:59:25 test/integration/tablestest/test_service.py::TestTables::testUpdateFirstRow PASSED [ 71%]
05:59:25 test/integration/tablestest/test_service.py::TestTables::testUpdateMultipleRows PASSED [ 71%]
05:59:25 test/integration/tablestest/test_service.py::TestTables::testUpdateAllows PASSED [ 71%]
05:59:25 test/integration/tablestest/test_service.py::TestTables::testCannotUpdateOutOfRange PASSED [ 71%]
05:59:28 test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata PASSED [ 71%]
05:59:35 test/integration/test_admin.py::TestAdmin::testGetGroup PASSED [ 71%]
05:59:35 test/integration/test_admin.py::TestAdmin::testSetGroup PASSED [ 71%]
05:59:37 test/integration/test_admin.py::TestAdmin::testChangePassword PASSED [ 71%]
05:59:37 test/integration/test_admin.py::TestAdmin::testGetEventContext4011 PASSED [ 71%]
05:59:39 test/integration/test_admin.py::TestAdmin::testUserRoles4056 PASSED [ 71%]
05:59:42 test/integration/test_admin.py::TestAdmin::testSetSecurityPassword PASSED [ 71%]
05:59:44 test/integration/test_annotation.py::TestFigureExportScripts::testAddAnnotations PASSED [ 71%]
05:59:56 test/integration/test_annotationPermissions.py::TestPrivateGroup::testAddTag PASSED [ 71%]
05:59:57 test/integration/test_annotationPermissions.py::TestPrivateGroup::testReadTag PASSED [ 71%]
05:59:57 test/integration/test_annotationPermissions.py::TestPrivateGroup::testRemoveTag PASSED [ 71%]
06:00:09 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testAddTag PASSED [ 71%]
06:00:09 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testReadTag PASSED [ 71%]
06:00:10 test/integration/test_annotationPermissions.py::TestReadOnlyGroup::testRemoveTag PASSED [ 71%]
06:00:22 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testAddTag PASSED [ 71%]
06:00:23 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testReadTag PASSED [ 72%]
06:00:23 test/integration/test_annotationPermissions.py::TestReadAnnotateGroup::testRemoveTag PASSED [ 72%]
06:00:38 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[root] PASSED [ 72%]
06:00:38 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[admin] PASSED [ 72%]
06:00:39 test/integration/test_annotationPermissions.py::TestMovePrivatePermissions::testAddTagMakePrivate[owner] PASSED [ 72%]
06:00:49 test/integration/test_chgrp.py::TestChgrp::testChgrpImportedImage PASSED [ 72%]
06:00:51 test/integration/test_chgrp.py::TestChgrp::testChgrpImage PASSED [ 72%]
06:00:55 test/integration/test_chgrp.py::TestChgrp::testChgrpPDI PASSED [ 72%]
06:01:05 test/integration/test_chgrp.py::TestChgrp::testChgrpRdef7825 PASSED [ 72%]
06:01:11 test/integration/test_chgrp.py::TestChgrp::testChgrpOneImageFilesetErr PASSED [ 72%]
06:01:18 test/integration/test_chgrp.py::TestChgrp::testChgrpAllImagesFilesetOK PASSED [ 72%]
06:01:24 test/integration/test_chgrp.py::TestChgrp::testChgrpAllImagesFilesetTwoCommandsErr PASSED [ 72%]
06:01:31 test/integration/test_chgrp.py::TestChgrp::testChgrpOneDatasetFilesetErr PASSED [ 72%]
06:01:37 test/integration/test_chgrp.py::TestChgrp::testChgrpAllDatasetsFilesetOK PASSED [ 72%]
06:01:44 test/integration/test_chgrp.py::TestChgrp::testChgrpOneDatasetFilesetOK PASSED [ 72%]
06:01:55 test/integration/test_chgrp.py::TestChgrp::testChgrpImagesTwoFilesetsErr PASSED [ 72%]
06:02:09 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetTwoFilesetsErr PASSED [ 72%]
06:02:15 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetCheckFsGroup PASSED [ 72%]
06:02:23 test/integration/test_chgrp.py::TestChgrp::testChgrpFilesetOK PASSED [ 72%]
06:02:29 test/integration/test_chgrp.py::TestChgrp::testChgrp11000 PASSED [ 72%]
06:02:32 test/integration/test_chgrp.py::TestChgrp::testChgrp11109 PASSED [ 72%]
06:02:34 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetWithImage PASSED [ 73%]
06:02:37 test/integration/test_chgrp.py::TestChgrp::testChgrpPDIReverseLinkOrder PASSED [ 73%]
06:02:40 test/integration/test_chgrp.py::TestChgrp::testChgrpTwoDatasetsLinkedToSingleImageDefault PASSED [ 73%]
06:02:42 test/integration/test_chgrp.py::TestChgrp::testChgrpTwoDatasetsLinkedToSingleImageHard PASSED [ 73%]
06:02:44 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectWithDatasetLinkedToImageWithOtherDatasetDefault PASSED [ 73%]
06:02:47 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectWithDatasetLinkedToImageWithOtherDatasetHard PASSED [ 73%]
06:02:50 test/integration/test_chgrp.py::TestChgrp::testChgrpDatasetWithImageLinkedToTwoProjects PASSED [ 73%]
06:02:53 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetAndImageDefault PASSED [ 73%]
06:02:55 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetAndImageHard PASSED [ 73%]
06:02:58 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetDefault PASSED [ 73%]
06:03:00 test/integration/test_chgrp.py::TestChgrp::testChgrpProjectLinkedToDatasetHard PASSED [ 73%]
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06:09:05 test/integration/test_ishare.py::TestIShare::test_OS_admin_user PASSED [ 80%]
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06:09:47 test/integration/test_mail.py::TestMail::testEveryone PASSED [ 81%]
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06:10:11 test/integration/test_model51.py::TestModel51::testAllLengths[PARSEC] PASSED [ 83%]
06:10:11 test/integration/test_model51.py::TestModel51::testAllLengths[THOU] PASSED [ 83%]
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06:10:11 test/integration/test_model51.py::TestModel51::testAllLengths[MILE] PASSED [ 83%]
06:10:12 test/integration/test_model51.py::TestModel51::testAllLengths[POINT] PASSED [ 83%]
06:10:12 test/integration/test_model51.py::TestModel51::testAllLengths[PIXEL] PASSED [ 83%]
06:10:12 test/integration/test_model51.py::TestModel51::testAllLengths[REFERENCEFRAME] PASSED [ 83%]
06:10:12 test/integration/test_model51.py::TestModel51::testAsMapMethod PASSED [ 83%]
06:10:12 test/integration/test_model51.py::TestModel51::testMapEagerFetch PASSED [ 83%]
06:10:18 test/integration/test_model51.py::TestModel51::testMapSecurity PASSED [ 83%]
06:10:22 test/integration/test_model51.py::TestModel51::testUnitProjections PASSED [ 84%]
06:10:24 test/integration/test_permissions.py::TestPermissions::testLoginToPublicGroupTicket1940 PASSED [ 84%]
06:10:28 test/integration/test_permissions.py::TestPermissions::testLinkingInPrivateGroup PASSED [ 84%]
06:10:28 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePrivateGroup PASSED [ 84%]
06:10:28 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadOnly PASSED [ 84%]
06:10:28 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadAnnotate PASSED [ 84%]
06:10:28 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroup PASSED [ 84%]
06:10:29 test/integration/test_permissions.py::TestPermissions::testCreatGroupAndchangePermissions PASSED [ 84%]
06:10:31 test/integration/test_permissions.py::TestPermissions::testGroupOwners PASSED [ 84%]
06:10:31 test/integration/test_permissions.py::TestPermissions::testSearchAllGroups PASSED [ 84%]
06:10:34 test/integration/test_permissions.py::TestPermissions::testOGContextParameter PASSED [ 84%]
06:10:37 test/integration/test_permissions.py::TestPermissions::testOGSetImplicitContext PASSED [ 84%]
06:10:40 test/integration/test_permissions.py::TestPermissions::testOGSetProxyContext PASSED [ 84%]
06:10:42 test/integration/test_permissions.py::TestPermissions::testOGSetSecurityContext PASSED [ 84%]
06:10:45 test/integration/test_permissions.py::TestPermissions::testOGArg PASSED [ 84%]
06:10:48 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneNotExplicit PASSED [ 84%]
06:10:53 test/integration/test_permissions.py::TestPermissions::testPrivateGroupCallContext PASSED [ 84%]
06:10:54 test/integration/test_permissions.py::TestPermissions::testAdminCanQueryWithGroupMinusOneTicket9632 PASSED [ 84%]
06:10:59 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsAdmin PASSED [ 84%]
06:11:05 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsNonAdmin PASSED [ 84%]
06:11:05 test/integration/test_permissions.py::TestPermissions::testImmutablePermissions PASSED [ 84%]
06:11:05 test/integration/test_permissions.py::TestPermissions::testDisallow PASSED [ 85%]
06:11:05 test/integration/test_permissions.py::TestPermissions::testClientSet PASSED [ 85%]
06:11:08 test/integration/test_permissions.py::TestPermissions::testAdminUseOfRawPixelsBean PASSED [ 85%]
06:11:11 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadGroupMinusOne PASSED [ 85%]
06:11:13 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroup PASSED [ 85%]
06:11:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-admin] PASSED [ 85%]
06:11:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-owner] PASSED [ 85%]
06:11:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-member] PASSED [ 85%]
06:11:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-admin] PASSED [ 85%]
06:11:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-owner] PASSED [ 85%]
06:11:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-member] PASSED [ 85%]
06:11:54 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-admin] PASSED [ 85%]
06:11:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-owner] PASSED [ 85%]
06:12:04 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-member] PASSED [ 85%]
06:12:09 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-admin] PASSED [ 85%]
06:12:15 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-owner] PASSED [ 85%]
06:12:20 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-member] PASSED [ 85%]
06:12:25 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-admin] PASSED [ 85%]
06:12:31 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-owner] PASSED [ 85%]
06:12:36 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-member] PASSED [ 85%]
06:12:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-admin] PASSED [ 86%]
06:12:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-owner] PASSED [ 86%]
06:12:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-member] PASSED [ 86%]
06:12:58 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-admin] PASSED [ 86%]
06:13:04 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-owner] PASSED [ 86%]
06:13:10 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-member] PASSED [ 86%]
06:13:15 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-admin] PASSED [ 86%]
06:13:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-owner] PASSED [ 86%]
06:13:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-member] PASSED [ 86%]
06:13:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-admin] PASSED [ 86%]
06:13:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-owner] PASSED [ 86%]
06:13:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-member] PASSED [ 86%]
06:13:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-admin] PASSED [ 86%]
06:13:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-owner] PASSED [ 86%]
06:13:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-member] PASSED [ 86%]
06:14:05 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-admin] PASSED [ 86%]
06:14:10 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-owner] PASSED [ 86%]
06:14:15 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-member] PASSED [ 86%]
06:14:20 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-admin] PASSED [ 86%]
06:14:25 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-owner] PASSED [ 86%]
06:14:31 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-member] PASSED [ 87%]
06:14:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-admin] PASSED [ 87%]
06:14:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-owner] PASSED [ 87%]
06:14:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-member] PASSED [ 87%]
06:14:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-admin] PASSED [ 87%]
06:14:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-owner] PASSED [ 87%]
06:15:05 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-member] PASSED [ 87%]
06:15:10 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-admin] PASSED [ 87%]
06:15:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-owner] PASSED [ 87%]
06:15:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-member] PASSED [ 87%]
06:15:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-admin] PASSED [ 87%]
06:15:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-owner] PASSED [ 87%]
06:15:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-member] PASSED [ 87%]
06:15:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-admin] PASSED [ 87%]
06:15:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-owner] PASSED [ 87%]
06:15:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-member] PASSED [ 87%]
06:15:58 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-admin] PASSED [ 87%]
06:16:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-owner] PASSED [ 87%]
06:16:08 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-member] PASSED [ 87%]
06:16:13 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-admin] PASSED [ 87%]
06:16:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-owner] PASSED [ 88%]
06:16:23 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-member] PASSED [ 88%]
06:16:29 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-admin] PASSED [ 88%]
06:16:34 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-owner] PASSED [ 88%]
06:16:39 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-member] PASSED [ 88%]
06:16:44 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-admin] PASSED [ 88%]
06:16:49 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-owner] PASSED [ 88%]
06:16:54 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-member] PASSED [ 88%]
06:16:59 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-admin] PASSED [ 88%]
06:17:05 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-owner] PASSED [ 88%]
06:17:10 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-member] PASSED [ 88%]
06:17:15 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-admin] PASSED [ 88%]
06:17:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-owner] PASSED [ 88%]
06:17:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-member] PASSED [ 88%]
06:17:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-admin] PASSED [ 88%]
06:17:37 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-owner] PASSED [ 88%]
06:17:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-member] PASSED [ 88%]
06:17:43 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[PlateI] SKIPPED [ 88%]
06:17:43 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[WellI] SKIPPED [ 88%]
06:17:43 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[ImageI] SKIPPED [ 88%]
06:17:43 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[FileAnnotationI] SKIPPED [ 88%]
06:17:46 test/integration/test_pixelsService.py::TestPixelsService::test9655 PASSED [ 89%]
06:17:49 test/integration/test_rawfilestore.py::TestRFS::testNullSize11743 PASSED [ 89%]
06:17:49 test/integration/test_rawfilestore.py::TestRFS::testGetFileId PASSED [ 89%]
06:17:55 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithClose PASSED [ 89%]
06:17:58 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithSave PASSED [ 89%]
06:18:01 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithForEachTile PASSED [ 89%]
06:18:06 test/integration/test_rawpixelsstore.py::TestRPS::testBigPlane PASSED [ 89%]
06:18:24 test/integration/test_rawpixelsstore.py::TestRPS::testRomioToPyramid PASSED [ 89%]
06:18:41 test/integration/test_rawpixelsstore.py::TestRPS::test2RomioToPyramidWithNegOne PASSED [ 89%]
06:19:07 test/integration/test_rawpixelsstore.py::TestRPS::testPyramidConcurrentAccess PASSED [ 89%]
06:19:15 test/integration/test_rawpixelsstore.py::TestTiles::testTiles PASSED [ 89%]
06:19:34 test/integration/test_reimport.py::TestReimportArchivedFiles::testConvertSynthetic PASSED [ 89%]
06:19:37 test/integration/test_render.py::TestRendering::test_render_region PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testCreate PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWrite PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWrite PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWriteRead PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testAppend PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testTruncateToZero PASSED [ 89%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testClose PASSED [ 90%]
06:19:40 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testImportLogFilenameSetting PASSED [ 90%]
06:19:43 test/integration/test_repository.py::TestRepository::test_dir PASSED [ 90%]
06:19:43 test/integration/test_repository.py::TestRepository::testBasicUsage PASSED [ 90%]
06:19:43 test/integration/test_repository.py::TestRepository::testSanityCheckRepos PASSED [ 90%]
06:19:43 test/integration/test_repository.py::TestRepository::testManagedRepoAsPubliRepo PASSED [ 90%]
06:19:46 test/integration/test_repository.py::TestFileExists::test_dir PASSED [ 90%]
06:19:46 test/integration/test_repository.py::TestFileExists::testFileExistsForDirectory PASSED [ 90%]
06:19:46 test/integration/test_repository.py::TestFileExists::testFileExistsForFile PASSED [ 90%]
06:19:49 test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir PASSED [ 90%]
06:19:54 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testTopPrivateGroup PASSED [ 90%]
06:20:00 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirPrivateGroup PASSED [ 90%]
06:20:05 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadOnlyGroup PASSED [ 90%]
06:20:11 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadWriteGroup PASSED [ 90%]
06:20:17 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadAnnotateGroup PASSED [ 90%]
06:20:21 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testMultiGroup PASSED [ 90%]
06:20:23 test/integration/test_repository.py::TestPythonImporter::test_dir PASSED [ 90%]
06:20:26 test/integration/test_repository.py::TestPythonImporter::testImportFileset PASSED [ 90%]
06:20:29 test/integration/test_repository.py::TestPythonImporter::testImportPaths PASSED [ 90%]
06:20:33 test/integration/test_repository.py::TestPythonImporter::testReopenRawFileStoresPR2542 PASSED [ 90%]
06:20:37 test/integration/test_repository.py::TestPythonImporter::testImportsFrom2Groups PASSED [ 91%]
06:20:40 test/integration/test_repository.py::TestRawAccess::test_dir PASSED [ 91%]
06:20:40 test/integration/test_repository.py::TestRawAccess::testAsNonAdmin PASSED [ 91%]
06:20:40 test/integration/test_repository.py::TestRawAccess::testAsAdmin PASSED [ 91%]
06:20:42 test/integration/test_repository.py::TestDbSync::test_dir PASSED [ 91%]
06:20:42 test/integration/test_repository.py::TestDbSync::testMtime PASSED [ 91%]
06:20:43 test/integration/test_repository.py::TestDbSync::testFileExists PASSED [ 91%]
06:20:43 test/integration/test_repository.py::TestDbSync::testNonDbFileNotReturned PASSED [ 91%]
06:20:46 test/integration/test_repository.py::TestRecursiveDelete::test_dir PASSED [ 91%]
06:20:46 test/integration/test_repository.py::TestRecursiveDelete::testCmdDeleteCantDeleteDirectories PASSED [ 91%]
06:20:47 test/integration/test_repository.py::TestRecursiveDelete::testRecursiveDeleteMethodAvailable PASSED [ 91%]
06:20:47 test/integration/test_repository.py::TestRecursiveDelete::testDoubleDot PASSED [ 91%]
06:20:49 test/integration/test_repository.py::TestDeleteLog::test_dir PASSED [ 91%]
06:20:49 test/integration/test_repository.py::TestDeleteLog::testSimpleDelete PASSED [ 91%]
06:20:52 test/integration/test_repository.py::TestUserTemplate::test_dir PASSED [ 91%]
06:20:52 test/integration/test_repository.py::TestUserTemplate::testCreateUuidFails PASSED [ 91%]
06:20:52 test/integration/test_repository.py::TestUserTemplate::testCreateUserDirPasses PASSED [ 91%]
06:20:52 test/integration/test_repository.py::TestUserTemplate::testCreateUuidUnderUserDirPasses PASSED [ 91%]
06:20:53 test/integration/test_repository.py::TestUserTemplate::testUserDirShouldBeGloballyWriteable PASSED [ 91%]
06:20:55 test/integration/test_repository.py::TestFilesetQueries::test_dir PASSED [ 91%]
06:20:55 test/integration/test_repository.py::TestFilesetQueries::testDeleteQuery PASSED [ 92%]
06:20:55 test/integration/test_repository.py::TestFilesetQueries::testCountFilesetFiles PASSED [ 92%]
06:20:55 test/integration/test_repository.py::TestFilesetQueries::testImportedImageFiles PASSED [ 92%]
06:20:58 test/integration/test_repository.py::TestOriginalMetadata::test_dir PASSED [ 92%]
06:21:01 test/integration/test_repository.py::TestOriginalMetadata::testFakeImport PASSED [ 92%]
06:21:04 test/integration/test_repository.py::TestDeletePerformance::test_dir PASSED [ 92%]
06:21:12 test/integration/test_repository.py::TestDeletePerformance::testImport PASSED [ 92%]
06:21:15 test/integration/test_rois.py::TestRois::teststats1 PASSED [ 92%]
06:21:15 test/integration/test_rois.py::TestRois::test3703 PASSED [ 92%]
06:21:21 test/integration/test_rois.py::TestRois::testGetROICount PASSED [ 92%]
06:21:26 test/integration/test_rois.py::TestRois::test8990 PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color0] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color1] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color2] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color3] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color4] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color5] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color6] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color7] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color8] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testShapeColors[color9] PASSED [ 92%]
06:21:27 test/integration/test_rois.py::TestRois::testGetShapeStatsRestricted PASSED [ 93%]
06:21:30 test/integration/test_scripts.py::TestScripts::testBasicUsage PASSED [ 93%]
06:21:30 test/integration/test_scripts.py::TestScripts::testTicket1036 PASSED [ 93%]
06:21:30 test/integration/test_scripts.py::TestScripts::testUploadAndPing PASSED [ 93%]
06:21:32 test/integration/test_scripts.py::TestScripts::testUpload2562 PASSED [ 93%]
06:21:33 test/integration/test_scripts.py::TestScripts::testDelete6905 PASSED [ 93%]
06:21:37 test/integration/test_scripts.py::TestScripts::testDelete11371 PASSED [ 93%]
06:21:41 test/integration/test_scripts.py::TestScripts::testUploadOfficialScript PASSED [ 93%]
06:21:46 test/integration/test_scripts.py::TestScripts::testRunScript PASSED [ 93%]
06:21:50 test/integration/test_scripts.py::TestScripts::testEditScript PASSED [ 93%]
06:21:53 test/integration/test_scripts.py::TestScripts::testScriptValidation PASSED [ 93%]
06:21:57 test/integration/test_scripts.py::TestScripts::testSpeedOfThumbnailFigure PASSED [ 93%]
06:22:06 test/integration/test_scripts.py::TestScripts::test6066 PASSED [ 93%]
06:22:11 test/integration/test_scripts.py::TestScripts::testDynamicTime PASSED [ 93%]
06:22:20 test/integration/test_scripts.py::TestScripts::testDynamicUpdate PASSED [ 93%]
06:22:29 test/integration/test_search.py::TestSearch::test2541 PASSED [ 93%]
06:22:45 test/integration/test_search.py::TestSearch::test3164Private PASSED [ 93%]
06:22:59 test/integration/test_search.py::TestSearch::test3164ReadOnlySelf PASSED [ 93%]
06:23:15 test/integration/test_search.py::TestSearch::test3164ReadOnlyOther PASSED [ 93%]
06:23:29 test/integration/test_search.py::TestSearch::test3164CollabSelf PASSED [ 93%]
06:23:47 test/integration/test_search.py::TestSearch::test3164CollabOther PASSED [ 94%]
06:23:53 test/integration/test_search.py::TestSearch::test3721Ordering PASSED [ 94%]
06:24:25 test/integration/test_search.py::TestSearch::test8692 PASSED [ 94%]
06:24:31 test/integration/test_search.py::TestSearch::test8846 PASSED [ 94%]
06:24:40 test/integration/test_search.py::TestSearch::testClientPath PASSED [ 94%]
06:24:48 test/integration/test_search.py::TestSearch::testFilename PASSED [ 94%]
06:24:56 test/integration/test_search.py::TestSearch::test_csv_attachment PASSED [ 94%]
06:25:06 test/integration/test_search.py::TestSearch::test_txt_attachment PASSED [ 94%]
06:25:12 test/integration/test_search.py::TestSearch::test_word_portions PASSED [ 94%]
06:25:14 test/integration/test_search.py::TestSearch::test_empty_query_string PASSED [ 94%]
06:25:20 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very small] PASSED [ 94%]
06:25:26 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very-small] PASSED [ 94%]
06:25:30 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-very_small] PASSED [ 94%]
06:25:36 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very-small-small very] PASSED [ 94%]
06:25:40 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very small] PASSED [ 94%]
06:25:46 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very-small] PASSED [ 94%]
06:25:50 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-very_small] PASSED [ 94%]
06:25:56 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very_small-small very] PASSED [ 94%]
06:26:00 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very small] PASSED [ 94%]
06:26:06 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very-small] PASSED [ 94%]
06:26:10 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-very_small] PASSED [ 95%]
06:26:16 test/integration/test_search.py::TestSearch::test_hyphen_underscore[very small-small very] PASSED [ 95%]
06:26:20 test/integration/test_search.py::TestSearch::test_map_annotations PASSED [ 95%]
06:26:23 test/integration/test_simple.py::TestSimple::testUserId PASSED [ 95%]
06:26:23 test/integration/test_simple.py::TestSimple::testGroupId PASSED [ 95%]
06:26:23 test/integration/test_simple.py::TestSimple::testGroupPermissions PASSED [ 95%]
06:26:36 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs PASSED [ 95%]
06:26:42 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test9070 PASSED [ 95%]
06:26:45 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithGrpCtx PASSED [ 95%]
06:26:48 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithGrpCtxButNoLoad PASSED [ 95%]
06:26:51 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618RootWithGrpCtx PASSED [ 95%]
06:26:55 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618RootWithGrpCtxButNoLoad PASSED [ 95%]
06:27:01 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testReadOnly10618MemberWithGrpCtxButNoLoad PASSED [ 95%]
06:27:06 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsThumbs PASSED [ 95%]
06:27:12 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsThumbsReadOnly PASSED [ 95%]
06:27:18 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-saveCurrent] PASSED [ 95%]
06:27:23 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-saveAs] PASSED [ 95%]
06:27:29 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-request] PASSED [ 95%]
06:27:34 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-resetDefault] PASSED [ 95%]
06:27:40 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readOnly-resetDefaultNoSave] PASSED [ 95%]
06:27:45 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-saveCurrent] PASSED [ 96%]
06:27:51 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-saveAs] PASSED [ 96%]
06:27:57 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-request] PASSED [ 96%]
06:28:02 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-resetDefault] PASSED [ 96%]
06:28:08 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readAnnotate-resetDefaultNoSave] PASSED [ 96%]
06:28:14 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-saveCurrent] PASSED [ 96%]
06:28:20 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-saveAs] PASSED [ 96%]
06:28:26 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-request] PASSED [ 96%]
06:28:32 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-resetDefault] PASSED [ 96%]
06:28:38 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[owner-readWrite-resetDefaultNoSave] PASSED [ 96%]
06:28:44 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-saveCurrent] PASSED [ 96%]
06:28:51 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-saveAs] PASSED [ 96%]
06:28:57 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-request] PASSED [ 96%]
06:29:03 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-resetDefault] PASSED [ 96%]
06:29:09 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readOnly-resetDefaultNoSave] PASSED [ 96%]
06:29:16 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-saveCurrent] PASSED [ 96%]
06:29:22 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-saveAs] PASSED [ 96%]
06:29:28 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-request] PASSED [ 96%]
06:29:34 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-resetDefault] PASSED [ 96%]
06:29:40 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readAnnotate-resetDefaultNoSave] PASSED [ 96%]
06:29:46 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-saveCurrent] PASSED [ 96%]
06:29:52 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-saveAs] PASSED [ 97%]
06:29:58 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-request] PASSED [ 97%]
06:30:05 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-resetDefault] PASSED [ 97%]
06:30:10 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsRnd[admin-readWrite-resetDefaultNoSave] PASSED [ 97%]
06:30:17 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readOnly-owner] PASSED [ 97%]
06:30:23 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readOnly-admin] PASSED [ 97%]
06:30:29 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readAnnotate-owner] PASSED [ 97%]
06:30:35 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readAnnotate-admin] PASSED [ 97%]
06:30:41 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readWrite-owner] PASSED [ 97%]
06:30:48 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsGetThumbnail[readWrite-admin] PASSED [ 97%]
06:30:54 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readOnly-owner] PASSED [ 97%]
06:31:00 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readOnly-admin] PASSED [ 97%]
06:31:06 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readAnnotate-owner] PASSED [ 97%]
06:31:12 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readAnnotate-admin] PASSED [ 97%]
06:31:18 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readWrite-owner] PASSED [ 97%]
06:31:24 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::test12145ShareSettingsSetRnd[readWrite-admin] PASSED [ 97%]
06:31:28 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testGetThumbnailSetAfterApplySettings PASSED [ 97%]
06:31:36 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnails PASSED [ 97%]
06:31:39 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnails64x64 PASSED [ 97%]
06:31:48 test/integration/test_thumbs.py::TestThumbs::testCreateThumbnailsByLongestSideSet64x64 PASSED [ 97%]
06:31:52 test/integration/test_thumbs.py::TestThumbs::testThumbnailExists PASSED [ 98%]
06:32:02 test/integration/test_thumbs.py::TestThumbs::testThumbnailVersion[one] PASSED [ 98%]
06:32:10 test/integration/test_thumbs.py::TestThumbs::testThumbnailVersion[set] PASSED [ 98%]
06:32:14 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailx64x64 PASSED [ 98%]
06:32:18 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSidex64 PASSED [ 98%]
06:32:22 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailDirectx64x64 PASSED [ 98%]
06:32:26 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailForSectionDirectx0x0x64x64 PASSED [ 98%]
06:32:30 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailx64x60 PASSED [ 98%]
06:32:34 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSidex60 PASSED [ 98%]
06:32:38 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailDirectx64x60 PASSED [ 98%]
06:32:42 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailForSectionDirectx0x0x64x60 PASSED [ 98%]
06:32:50 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailSetx64x64 PASSED [ 98%]
06:32:59 test/integration/test_thumbs.py::TestThumbs::testGetThumbnailByLongestSideSetx64 PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test711 PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test843 PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test880 PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test883WithoutClose PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test883WithClose PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test883Upload PASSED [ 98%]
06:33:02 test/integration/test_tickets1000.py::TestTicket1000::test985 PASSED [ 98%]
06:33:06 test/integration/test_tickets2000.py::TestTickets2000::test1064 PASSED [ 99%]
06:33:12 test/integration/test_tickets2000.py::TestTickets2000::test1067 PASSED [ 99%]
06:33:12 test/integration/test_tickets2000.py::TestTickets2000::test1027 PASSED [ 99%]
06:33:14 test/integration/test_tickets2000.py::TestTickets2000::test1069 PASSED [ 99%]
06:33:14 test/integration/test_tickets2000.py::TestTickets2000::test1071 PASSED [ 99%]
06:33:19 test/integration/test_tickets2000.py::TestTickets2000::test1071_1 PASSED [ 99%]
06:33:25 test/integration/test_tickets2000.py::TestTickets2000::test1072 PASSED [ 99%]
06:33:26 test/integration/test_tickets2000.py::TestTickets2000::test1088 PASSED [ 99%]
06:33:32 test/integration/test_tickets2000.py::TestTickets2000::test1109 PASSED [ 99%]
06:33:37 test/integration/test_tickets2000.py::TestTickets2000::test1163 PASSED [ 99%]
06:33:37 test/integration/test_tickets2000.py::TestTickets2000::test1183 PASSED [ 99%]
06:33:40 test/integration/test_tickets3000.py::TestTickets3000::test2396 PASSED [ 99%]
06:33:51 test/integration/test_tickets3000.py::TestTickets3000::test2547 PASSED [ 99%]
06:33:51 test/integration/test_tickets3000.py::TestTickets3000::test2628 PASSED [ 99%]
06:33:55 test/integration/test_tickets3000.py::TestTickets3000::test2952 PASSED [ 99%]
06:34:25 test/integration/test_tickets3000.py::TestTickets3000::test2762 PASSED [ 99%]
06:34:30 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroup PASSED [ 99%]
06:34:34 test/integration/test_tickets4000.py::TestTickets4000::testChangeActiveGroupWhenConnectionLost PASSED [ 99%]
06:34:37 test/integration/test_tickets4000.py::TestTickets4000::test3201 PASSED [ 99%]
06:34:37 test/integration/test_tickets4000.py::TestTickets4000::test3131 PASSED [ 99%]
06:34:44 test/integration/test_util.py::TestUpgradeCheck::testReal FAILED [100%]
06:34:44 ==================================== ERRORS ====================================
06:34:44 ______________ ERROR at setup of TestConnectionMethods.testClose _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fca6a0d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd361b80>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testClose>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91fca6a6d0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fca6a0d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd361b80>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:32:07,970 INFO [ omero.gateway] (MainThread) created connection (uuid=7a37a260-0518-4ed6-8751-d009cccb0e5c)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=7a37a260-0518-4ed6-8751-d009cccb0e5c)
06:34:44 _________ ERROR at setup of TestConnectionMethods.testTopLevelObjects __________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd1abd30>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd1ab340>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testTopLevelObjects>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91fca6a6d0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd1abd30>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd1ab340>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:34:17,762 INFO [ omero.gateway] (MainThread) created connection (uuid=90afede9-653b-40db-9888-6c78c7fe1299)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=90afede9-653b-40db-9888-6c78c7fe1299)
06:34:44 ____________ ERROR at setup of TestFindObject.testFindExperimenter _____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f925547a3a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f925547a640>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testFindExperimenter>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91fce5b490>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f925547a3a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f925547a640>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:36:46,141 INFO [ omero.gateway] (MainThread) created connection (uuid=3cc34e2b-89b7-4350-b4a9-e968c51eec52)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=3cc34e2b-89b7-4350-b4a9-e968c51eec52)
06:34:44 ______________ ERROR at setup of TestGetObject.testGetAnnotations ______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9171f25a90>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9171f25700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetAnnotations>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9171f25a90>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9171f25700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:39:25,310 INFO [ omero.gateway] (MainThread) created connection (uuid=caab1517-0dc6-46af-9965-f06b47a28fb0)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=caab1517-0dc6-46af-9965-f06b47a28fb0)
06:34:44 _________________ ERROR at setup of TestGetObject.testGetImage _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f92136075b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213607850>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetImage>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f92136075b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213607850>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:41:35,613 INFO [ omero.gateway] (MainThread) created connection (uuid=bd58ff0b-b36a-4a59-b855-c44cfd5a5df3)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=bd58ff0b-b36a-4a59-b855-c44cfd5a5df3)
06:34:44 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-True] _______
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9212fefee0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212fef970>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-True]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9212fefee0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212fef970>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:43:46,740 INFO [ omero.gateway] (MainThread) created connection (uuid=647b459a-2dc1-483b-abf3-92d68b2627f3)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=647b459a-2dc1-483b-abf3-92d68b2627f3)
06:34:44 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-False] ______
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9200785100>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200785640>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-False]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9200785100>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200785640>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:45:57,792 INFO [ omero.gateway] (MainThread) created connection (uuid=a6a49be8-be2c-4a2f-aed6-2c258f8fa4e9)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=a6a49be8-be2c-4a2f-aed6-2c258f8fa4e9)
06:34:44 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-True] ______
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2a7d00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd2a7760>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-True]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2a7d00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd2a7760>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:48:08,854 INFO [ omero.gateway] (MainThread) created connection (uuid=4480e554-02dc-45ee-ba26-6a5f69f31549)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=4480e554-02dc-45ee-ba26-6a5f69f31549)
06:34:44 _____ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-False] ______
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f92137840d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213784520>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-False]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f92137840d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213784520>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:50:19,896 INFO [ omero.gateway] (MainThread) created connection (uuid=750db71b-3d4b-436a-9a91-a9763ca9ca3a)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=750db71b-3d4b-436a-9a91-a9763ca9ca3a)
06:34:44 ________________ ERROR at setup of TestGetObject.testTraversal _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd433220>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd4330d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg_tiny' for <Function testTraversal>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9154080af0>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg_tiny(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd433220>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd4330d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:52:31,013 INFO [ omero.gateway] (MainThread) created connection (uuid=7ad8a40e-874e-4abc-ab3a-6aba125cc954)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=7ad8a40e-874e-4abc-ab3a-6aba125cc954)
06:34:44 __________________ ERROR at setup of TestImage.testThumbnail ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a3d0a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a3d8e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testThumbnail>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a3d0a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a3d8e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:55:06,316 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:06,322 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:06,364 INFO [ omero.gateway] (MainThread) created connection (uuid=745fd60f-d87c-4a47-a729-3a45b07e7ac6)
06:34:44 2024-10-26 04:55:07,333 INFO [ omero.gateway] (MainThread) created connection (uuid=b79ef232-fa80-44ad-88b1-4ee101b62533)
06:34:44 2024-10-26 04:55:07,370 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,411 INFO [ omero.gateway] (MainThread) created connection (uuid=a3bfb9a0-738e-400c-bfef-dddf79c4a033)
06:34:44 2024-10-26 04:55:07,456 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,502 INFO [ omero.gateway] (MainThread) created connection (uuid=10d18db6-2fc0-43f4-bf59-7a0a44ea0334)
06:34:44 2024-10-26 04:55:07,545 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,586 INFO [ omero.gateway] (MainThread) created connection (uuid=8d55da66-e701-4842-b4e1-c3be0a4599ac)
06:34:44 2024-10-26 04:55:07,628 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,669 INFO [ omero.gateway] (MainThread) created connection (uuid=3df75b2e-2eb5-49d6-92bd-f49f2c1b587e)
06:34:44 2024-10-26 04:55:07,710 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,751 INFO [ omero.gateway] (MainThread) created connection (uuid=07c48e51-c1d5-440a-a874-1c0331363995)
06:34:44 2024-10-26 04:55:07,791 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,834 INFO [ omero.gateway] (MainThread) created connection (uuid=2c9f0158-0c8c-4f1b-98bf-67a0f8dd866f)
06:34:44 2024-10-26 04:55:07,887 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:07,928 INFO [ omero.gateway] (MainThread) created connection (uuid=ce31b329-a372-46cc-b68b-11a712c81c1f)
06:34:44 2024-10-26 04:55:07,982 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:08,024 INFO [ omero.gateway] (MainThread) created connection (uuid=8e9faaa3-94a3-4895-92b8-93dc24f06cb4)
06:34:44 2024-10-26 04:55:08,072 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:08,076 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:55:08,125 INFO [ omero.gateway] (MainThread) created connection (uuid=ee9498d3-9138-4137-a9c1-881a5eaafaf9)
06:34:44 2024-10-26 04:55:08,208 INFO [ omero.gateway] (MainThread) created connection (uuid=4460fe44-0cf6-459f-9d6e-92bb6447a64f)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=745fd60f-d87c-4a47-a729-3a45b07e7ac6)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=b79ef232-fa80-44ad-88b1-4ee101b62533)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=a3bfb9a0-738e-400c-bfef-dddf79c4a033)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=10d18db6-2fc0-43f4-bf59-7a0a44ea0334)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=8d55da66-e701-4842-b4e1-c3be0a4599ac)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=3df75b2e-2eb5-49d6-92bd-f49f2c1b587e)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=07c48e51-c1d5-440a-a874-1c0331363995)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2c9f0158-0c8c-4f1b-98bf-67a0f8dd866f)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=ce31b329-a372-46cc-b68b-11a712c81c1f)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=8e9faaa3-94a3-4895-92b8-93dc24f06cb4)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=ee9498d3-9138-4137-a9c1-881a5eaafaf9)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=4460fe44-0cf6-459f-9d6e-92bb6447a64f)
06:34:44 _________________ ERROR at setup of TestImage.testThumbnailSet _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9212f485b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212f48910>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testThumbnailSet>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9212f485b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212f48910>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:57:17,706 INFO [ omero.gateway] (MainThread) created connection (uuid=81b1a5ac-adf7-45c5-9e71-410c9a77db81)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=81b1a5ac-adf7-45c5-9e71-410c9a77db81)
06:34:44 _______________ ERROR at setup of TestImage.testRenderingModels ________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcad14f0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e52f6f40>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderingModels>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcad14f0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e52f6f40>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 04:59:28,778 INFO [ omero.gateway] (MainThread) created connection (uuid=29111beb-050b-4e4a-8daa-8e3dfe3c3de0)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=29111beb-050b-4e4a-8daa-8e3dfe3c3de0)
06:34:44 _________________ ERROR at setup of TestImage.testSplitChannel _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e68c8d90>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e568cbb0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testSplitChannel>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e68c8d90>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e568cbb0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:01:39,885 INFO [ omero.gateway] (MainThread) created connection (uuid=0ef241e1-6b3f-4582-880d-102990ff554a)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=0ef241e1-6b3f-4582-880d-102990ff554a)
06:34:44 __________________ ERROR at setup of TestImage.testLinePlots ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e53a2df0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e6095a00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testLinePlots>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e53a2df0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e6095a00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:03:50,928 INFO [ omero.gateway] (MainThread) created connection (uuid=87fe3cb8-1146-42b5-a5d6-1d2d930ae1bf)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=87fe3cb8-1146-42b5-a5d6-1d2d930ae1bf)
06:34:44 _________________ ERROR at setup of TestImage.testProjections __________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5624310>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fcd39c40>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testProjections>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5624310>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fcd39c40>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:06:01,999 INFO [ omero.gateway] (MainThread) created connection (uuid=184f3a85-1999-41cc-ad9e-0be5edc65426)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=184f3a85-1999-41cc-ad9e-0be5edc65426)
06:34:44 __________________ ERROR at setup of TestImage.testProperties __________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e565a520>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e565a1f0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testProperties>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e565a520>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e565a1f0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:08:13,091 INFO [ omero.gateway] (MainThread) created connection (uuid=a193c309-bac6-4fdd-bd7f-1043421d1932)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=a193c309-bac6-4fdd-bd7f-1043421d1932)
06:34:44 ________________ ERROR at setup of TestImage.testPixelSizeUnits ________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91ff55fe50>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91ff55ff10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testPixelSizeUnits>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91ff55fe50>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91ff55ff10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:10:24,149 INFO [ omero.gateway] (MainThread) created connection (uuid=0a1f361e-9bb6-4b74-8ec3-7c0aacc0840d)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=0a1f361e-9bb6-4b74-8ec3-7c0aacc0840d)
06:34:44 ________________ ERROR at setup of TestImage.testUnitsGetValue _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd14a070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd14a6d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testUnitsGetValue>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd14a070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd14a6d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:12:35,642 INFO [ omero.gateway] (MainThread) created connection (uuid=d303ad92-8ed2-4c38-a1ea-4b0f8357b601)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=d303ad92-8ed2-4c38-a1ea-4b0f8357b601)
06:34:44 ____________ ERROR at setup of TestImage.testChannelWavelengthUnits ____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fce823d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e642eca0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testChannelWavelengthUnits>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fce823d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e642eca0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:14:46,290 INFO [ omero.gateway] (MainThread) created connection (uuid=01e41f1e-6731-48f0-8a7e-36cb422abc49)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=01e41f1e-6731-48f0-8a7e-36cb422abc49)
06:34:44 ______________ ERROR at setup of TestImage.testExposureTimeUnits _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd393400>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92135f5a60>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testExposureTimeUnits>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd393400>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92135f5a60>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:16:57,351 INFO [ omero.gateway] (MainThread) created connection (uuid=3eb69c61-1cfe-450d-9768-f35720f4bd0e)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=3eb69c61-1cfe-450d-9768-f35720f4bd0e)
06:34:44 __________________ ERROR at setup of TestImage.testShortname ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5b66790>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921331f8e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testShortname>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5b66790>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921331f8e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:19:08,417 INFO [ omero.gateway] (MainThread) created connection (uuid=a79e8761-e463-470d-9311-d3a45ce49e65)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=a79e8761-e463-470d-9311-d3a45ce49e65)
06:34:44 __________________ ERROR at setup of TestImage.testImageDate ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5ccd850>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921335bdc0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testImageDate>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5ccd850>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921335bdc0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:21:19,538 INFO [ omero.gateway] (MainThread) created connection (uuid=84be8036-8cb6-4cc5-aa43-34c9add6f575)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=84be8036-8cb6-4cc5-aa43-34c9add6f575)
06:34:44 ________________ ERROR at setup of TestImage.testSimpleMarshal _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56d1490>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57805e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testSimpleMarshal>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56d1490>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57805e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:23:30,588 INFO [ omero.gateway] (MainThread) created connection (uuid=0eb50dd7-1ab8-454a-99e0-62b46b652730)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=0eb50dd7-1ab8-454a-99e0-62b46b652730)
06:34:44 ____________________ ERROR at setup of TestImage.testExport ____________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9173471850>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e66e3c10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testExport>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9173471850>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e66e3c10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:25:41,657 INFO [ omero.gateway] (MainThread) created connection (uuid=5ac5dcb0-30ac-4c3b-935b-64697540c655)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=5ac5dcb0-30ac-4c3b-935b-64697540c655)
06:34:44 _______________ ERROR at setup of TestImage.testRenderJpegRegion _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e6c57f10>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e566a2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e6c57f10>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e566a2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:27:53,153 INFO [ omero.gateway] (MainThread) created connection (uuid=9992caef-a8a0-49b8-83a4-b361b1834f46)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=9992caef-a8a0-49b8-83a4-b361b1834f46)
06:34:44 _________ ERROR at setup of TestImage.testRenderJpegRegion_resolution __________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9173a5f460>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e571ec10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_resolution>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9173a5f460>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e571ec10>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:30:03,837 INFO [ omero.gateway] (MainThread) created connection (uuid=dcfa48bc-977e-478d-ab53-48d271273569)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=dcfa48bc-977e-478d-ab53-48d271273569)
06:34:44 _____ ERROR at setup of TestImage.testRenderJpegRegion_invalid_resolution ______
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a28790>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a28250>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_invalid_resolution>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a28790>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a28250>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:32:14,871 INFO [ omero.gateway] (MainThread) created connection (uuid=cb4c8b1b-3eb5-4116-8e55-a2ebc76ac6fc)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=cb4c8b1b-3eb5-4116-8e55-a2ebc76ac6fc)
06:34:44 ______________ ERROR at setup of TestImage.testRenderBirdsEyeView ______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9200d615e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e66e3040>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9200d615e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e66e3040>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:34:25,917 INFO [ omero.gateway] (MainThread) created connection (uuid=7bb7eafe-b497-4c6a-b62c-c866832fceb5)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=7bb7eafe-b497-4c6a-b62c-c866832fceb5)
06:34:44 ___________ ERROR at setup of TestImage.testRenderBirdsEyeView_Size ____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcabf9d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212f77ee0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView_Size>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173a51e50>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcabf9d0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9212f77ee0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:36:36,997 INFO [ omero.gateway] (MainThread) created connection (uuid=efb48b48-e0ba-4176-b5a4-8fffd5606eae)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=efb48b48-e0ba-4176-b5a4-8fffd5606eae)
06:34:44 _____________ ERROR at setup of TestPixels.testReuseRawPixelsStore _____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91705908e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd332940>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testReuseRawPixelsStore>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91705908e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd332940>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:39:09,122 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:09,128 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:09,170 INFO [ omero.gateway] (MainThread) created connection (uuid=a50d1ac0-c5ab-4f9e-ae6a-a35d9f94a344)
06:34:44 2024-10-26 05:39:09,667 INFO [ omero.gateway] (MainThread) created connection (uuid=1caab943-1bc8-419b-9e46-9b80bfae54aa)
06:34:44 2024-10-26 05:39:09,706 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:09,750 INFO [ omero.gateway] (MainThread) created connection (uuid=9ba5c8b9-684d-40b4-93f5-f671c85cf014)
06:34:44 2024-10-26 05:39:09,789 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:09,830 INFO [ omero.gateway] (MainThread) created connection (uuid=f9a9ae4d-5614-4dde-a94a-e89828433e0d)
06:34:44 2024-10-26 05:39:09,876 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:09,931 INFO [ omero.gateway] (MainThread) created connection (uuid=2406e53b-bf8c-4c8f-8499-4a48a8af8f89)
06:34:44 2024-10-26 05:39:09,978 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,025 INFO [ omero.gateway] (MainThread) created connection (uuid=0c5eb1f2-385d-4546-86f8-a90107db2fd3)
06:34:44 2024-10-26 05:39:10,070 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,114 INFO [ omero.gateway] (MainThread) created connection (uuid=178ed080-4163-4099-a77b-bbb749ebd89d)
06:34:44 2024-10-26 05:39:10,157 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,199 INFO [ omero.gateway] (MainThread) created connection (uuid=c01d965d-657b-4ea1-b9d9-1d6e03c045ce)
06:34:44 2024-10-26 05:39:10,253 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,298 INFO [ omero.gateway] (MainThread) created connection (uuid=e61d1a23-2815-45ae-a360-7ff2fff821e9)
06:34:44 2024-10-26 05:39:10,359 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,403 INFO [ omero.gateway] (MainThread) created connection (uuid=69c1a215-e747-41fa-8567-f573f367c1f8)
06:34:44 2024-10-26 05:39:10,456 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,461 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:39:10,505 INFO [ omero.gateway] (MainThread) created connection (uuid=c1b7213f-0a59-4c1e-9a29-fb1f9de4158e)
06:34:44 2024-10-26 05:39:10,586 INFO [ omero.gateway] (MainThread) created connection (uuid=bcfcc6a4-c123-4cd5-b4af-3c2798edee75)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=a50d1ac0-c5ab-4f9e-ae6a-a35d9f94a344)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=1caab943-1bc8-419b-9e46-9b80bfae54aa)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=9ba5c8b9-684d-40b4-93f5-f671c85cf014)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=f9a9ae4d-5614-4dde-a94a-e89828433e0d)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2406e53b-bf8c-4c8f-8499-4a48a8af8f89)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=0c5eb1f2-385d-4546-86f8-a90107db2fd3)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=178ed080-4163-4099-a77b-bbb749ebd89d)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=c01d965d-657b-4ea1-b9d9-1d6e03c045ce)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=e61d1a23-2815-45ae-a360-7ff2fff821e9)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=69c1a215-e747-41fa-8567-f573f367c1f8)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=c1b7213f-0a59-4c1e-9a29-fb1f9de4158e)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=bcfcc6a4-c123-4cd5-b4af-3c2798edee75)
06:34:44 __________________ ERROR at setup of TestPixels.testPlaneInfo __________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e4355730>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921494b730>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testPlaneInfo>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e4355730>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f921494b730>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:41:19,637 INFO [ omero.gateway] (MainThread) created connection (uuid=43a25ece-4f07-4093-a974-8608ee4b67c5)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=43a25ece-4f07-4093-a974-8608ee4b67c5)
06:34:44 _________________ ERROR at setup of TestPixels.testPixelsType __________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e42669a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9171f79550>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testPixelsType>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e42669a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9171f79550>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:43:30,684 INFO [ omero.gateway] (MainThread) created connection (uuid=ac8b1d33-761a-45bb-82fd-277a60ab46e2)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=ac8b1d33-761a-45bb-82fd-277a60ab46e2)
06:34:44 ___________________ ERROR at setup of TestPixels.testGetTile ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e574ca30>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5cba100>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetTile>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e574ca30>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5cba100>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:45:41,750 INFO [ omero.gateway] (MainThread) created connection (uuid=831014db-c4cd-4745-b33b-bd91d2922d53)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=831014db-c4cd-4745-b33b-bd91d2922d53)
06:34:44 __________________ ERROR at setup of TestPixels.testGetPlane ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f921408e820>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200d6f2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetPlane>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f921408e820>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200d6f2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:47:52,849 INFO [ omero.gateway] (MainThread) created connection (uuid=992bf7f7-9c24-49e9-98db-8fb5f2b32322)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=992bf7f7-9c24-49e9-98db-8fb5f2b32322)
06:34:44 ________ ERROR at setup of TestPixels.testGetPlanesExceptionOnGetPlane _________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcb1b640>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9173a5a700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnGetPlane>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fcb1b640>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9173a5a700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:50:03,912 INFO [ omero.gateway] (MainThread) created connection (uuid=1b1fa18e-04f9-4b9b-86ad-2edff6adba53)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=1b1fa18e-04f9-4b9b-86ad-2edff6adba53)
06:34:44 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnClose __________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2c22e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213c239d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnClose>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2c22e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213c239d0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:52:14,977 INFO [ omero.gateway] (MainThread) created connection (uuid=87a3534c-1a6a-41de-8162-3d2c06efa113)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=87a3534c-1a6a-41de-8162-3d2c06efa113)
06:34:44 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnBoth ___________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213e09b80>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fccf32b0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnBoth>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213e09b80>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fccf32b0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:54:26,050 INFO [ omero.gateway] (MainThread) created connection (uuid=86d6127c-3d48-4af0-aa62-886b9475d374)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=86d6127c-3d48-4af0-aa62-886b9475d374)
06:34:44 ________________ ERROR at setup of TestPixels.testGetHistogram _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fca9f730>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213814d30>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetHistogram>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92137c4d30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fca9f730>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9213814d30>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:56:37,667 INFO [ omero.gateway] (MainThread) created connection (uuid=b42bdd57-414d-44d7-b358-b48666dcaa57)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=b42bdd57-414d-44d7-b358-b48666dcaa57)
06:34:44 ___________________ ERROR at setup of TestRDefs.testDefault ____________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56b52e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd20d490>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testDefault>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56b52e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd20d490>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 05:58:51,993 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,002 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,052 INFO [ omero.gateway] (MainThread) created connection (uuid=72f4975c-c669-40b9-b749-43e95873642c)
06:34:44 2024-10-26 05:58:52,570 INFO [ omero.gateway] (MainThread) created connection (uuid=75f801b9-e521-465e-a77e-1216314f37a5)
06:34:44 2024-10-26 05:58:52,610 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,653 INFO [ omero.gateway] (MainThread) created connection (uuid=faa8e33c-a357-4633-a1ac-a07c2955b1e7)
06:34:44 2024-10-26 05:58:52,693 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,736 INFO [ omero.gateway] (MainThread) created connection (uuid=6adb473b-99e0-44f2-b340-d81e695e1f58)
06:34:44 2024-10-26 05:58:52,781 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,824 INFO [ omero.gateway] (MainThread) created connection (uuid=b3d83d3a-f70b-4472-a21d-aa6373f382b4)
06:34:44 2024-10-26 05:58:52,872 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:52,915 INFO [ omero.gateway] (MainThread) created connection (uuid=6d9d6d49-d466-4cf4-a1e0-488e61bdfe91)
06:34:44 2024-10-26 05:58:52,959 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,063 INFO [ omero.gateway] (MainThread) created connection (uuid=2f02dbaa-1785-4ffd-9ab1-fef8d2d5d944)
06:34:44 2024-10-26 05:58:53,106 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,149 INFO [ omero.gateway] (MainThread) created connection (uuid=034b91d1-23b2-4f66-a6ce-aff9ba7ebdb1)
06:34:44 2024-10-26 05:58:53,204 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,247 INFO [ omero.gateway] (MainThread) created connection (uuid=21ad5dad-e40c-48b2-a914-96cc144827d0)
06:34:44 2024-10-26 05:58:53,304 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,345 INFO [ omero.gateway] (MainThread) created connection (uuid=88178b59-9a4f-4e78-8cef-13c8408e9145)
06:34:44 2024-10-26 05:58:53,397 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,400 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 05:58:53,444 INFO [ omero.gateway] (MainThread) created connection (uuid=e728bc58-f455-43c5-b320-e19322eb1190)
06:34:44 2024-10-26 05:58:53,524 INFO [ omero.gateway] (MainThread) created connection (uuid=251ec286-b42e-4d81-ad16-214101dccfe5)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=72f4975c-c669-40b9-b749-43e95873642c)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=75f801b9-e521-465e-a77e-1216314f37a5)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=faa8e33c-a357-4633-a1ac-a07c2955b1e7)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=6adb473b-99e0-44f2-b340-d81e695e1f58)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=b3d83d3a-f70b-4472-a21d-aa6373f382b4)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=6d9d6d49-d466-4cf4-a1e0-488e61bdfe91)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2f02dbaa-1785-4ffd-9ab1-fef8d2d5d944)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=034b91d1-23b2-4f66-a6ce-aff9ba7ebdb1)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=21ad5dad-e40c-48b2-a914-96cc144827d0)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=88178b59-9a4f-4e78-8cef-13c8408e9145)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=e728bc58-f455-43c5-b320-e19322eb1190)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=251ec286-b42e-4d81-ad16-214101dccfe5)
06:34:44 __________________ ERROR at setup of TestRDefs.testCustomized __________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e57495b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57497c0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testCustomized>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e57495b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57497c0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:01:03,386 INFO [ omero.gateway] (MainThread) created connection (uuid=2422b4e1-0edc-4990-947f-36d743809e38)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2422b4e1-0edc-4990-947f-36d743809e38)
06:34:44 ________________ ERROR at setup of TestRDefs.testChannelWindows ________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd106a00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd106220>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testChannelWindows>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd106a00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd106220>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:03:14,439 INFO [ omero.gateway] (MainThread) created connection (uuid=b58cea5a-0646-415e-bd99-724fb6c69e50)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=b58cea5a-0646-415e-bd99-724fb6c69e50)
06:34:44 ______________ ERROR at setup of TestRDefs.testFloatDefaultMinMax ______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5f431f0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fca69d00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testFloatDefaultMinMax>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5f431f0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fca69d00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:05:25,501 INFO [ omero.gateway] (MainThread) created connection (uuid=14b448c7-cb1f-4254-8ddb-898ce42c7801)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=14b448c7-cb1f-4254-8ddb-898ce42c7801)
06:34:44 _________________ ERROR at setup of TestRDefs.testEmissionWave _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e60cd5b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5701c70>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testEmissionWave>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e60cd5b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5701c70>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:07:36,586 INFO [ omero.gateway] (MainThread) created connection (uuid=7087819c-6e19-42f3-93d4-cd1f16deb902)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=7087819c-6e19-42f3-93d4-cd1f16deb902)
06:34:44 __________________ ERROR at setup of TestRDefs.testBatchCopy ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213e37130>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92131fb940>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testBatchCopy>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213e37130>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92131fb940>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:09:47,646 INFO [ omero.gateway] (MainThread) created connection (uuid=2b4678b3-80b1-4248-8abb-dba1a7d3ea10)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2b4678b3-80b1-4248-8abb-dba1a7d3ea10)
06:34:44 ____________ ERROR at setup of TestRDefs.testGroupBasedPermissions _____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd0e6b20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fce5b100>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGroupBasedPermissions>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd0e6b20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fce5b100>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:11:59,270 INFO [ omero.gateway] (MainThread) created connection (uuid=abc2b2d3-c893-497b-8d22-9d3406c986e8)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=abc2b2d3-c893-497b-8d22-9d3406c986e8)
06:34:44 ___________________ ERROR at setup of TestRDefs.testGetRdefs ___________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2bb130>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd2bb760>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetRdefs>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd2bb130>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd2bb760>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:14:09,781 INFO [ omero.gateway] (MainThread) created connection (uuid=e1edf65c-0a7a-4900-b38e-9c535850d78e)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=e1edf65c-0a7a-4900-b38e-9c535850d78e)
06:34:44 ________________ ERROR at setup of TestRDefs.testResetDefaults _________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56bcd00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd3cce50>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testResetDefaults>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e56bcd00>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd3cce50>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:16:20,852 INFO [ omero.gateway] (MainThread) created connection (uuid=e910a0c1-d07d-40ce-afd3-ad0ff140d2bd)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=e910a0c1-d07d-40ce-afd3-ad0ff140d2bd)
06:34:44 _____________ ERROR at setup of TestRDefs.testQuantizationSettings _____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e64cbdf0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e64cba30>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testQuantizationSettings>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e64cbdf0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e64cba30>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:18:31,916 INFO [ omero.gateway] (MainThread) created connection (uuid=3bc261b4-5724-46cf-be7b-b0b04dcb12ac)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=3bc261b4-5724-46cf-be7b-b0b04dcb12ac)
06:34:44 _________ ERROR at setup of TestRDefs.testQuantizationSettingsInvalid __________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd36fe20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57037f0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsInvalid>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91fd36fe20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e57037f0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:20:43,000 INFO [ omero.gateway] (MainThread) created connection (uuid=bf522b7c-2682-429e-81e5-6cd1bf056850)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=bf522b7c-2682-429e-81e5-6cd1bf056850)
06:34:44 ___________ ERROR at setup of TestRDefs.testQuantizationSettingsBulk ___________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213814040>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd106220>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsBulk>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9213814040>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91fd106220>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:22:54,079 INFO [ omero.gateway] (MainThread) created connection (uuid=1c481aa0-bf5b-4f79-a78a-efd855b7289a)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=1c481aa0-bf5b-4f79-a78a-efd855b7289a)
06:34:44 _______________ ERROR at setup of TestRDefs.testGetChannelsNoRE ________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91727fa5b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91727fa2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testGetChannelsNoRE>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91727fa5b0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91727fa2e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:25:05,120 INFO [ omero.gateway] (MainThread) created connection (uuid=43487d1d-5fe1-425f-8e1e-70f7e51060a1)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=43487d1d-5fe1-425f-8e1e-70f7e51060a1)
06:34:44 ____________ ERROR at setup of TestRDefs.testSetActiveChannelsNoRE _____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9214499070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200a10700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsNoRE>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f9214499070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f9200a10700>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:27:16,192 INFO [ omero.gateway] (MainThread) created connection (uuid=52e28eb9-48f3-4ad2-ba34-2fb3d1a2e91c)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=52e28eb9-48f3-4ad2-ba34-2fb3d1a2e91c)
06:34:44 ___________ ERROR at setup of TestRDefs.testSetActiveChannelsWithRE ____________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91540a78e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91540a7040>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsWithRE>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91540a78e0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91540a7040>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:29:27,699 INFO [ omero.gateway] (MainThread) created connection (uuid=ccb183c2-f6a9-4868-9d34-4da85abcef3e)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=ccb183c2-f6a9-4868-9d34-4da85abcef3e)
06:34:44 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[True] ____
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a763a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5b8fee0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[True]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a763a0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5b8fee0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:31:38,340 INFO [ omero.gateway] (MainThread) created connection (uuid=93107312-da92-4638-afa0-ca826436f3bd)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=93107312-da92-4638-afa0-ca826436f3bd)
06:34:44 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[False] ___
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f925508af10>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f925508afd0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[False]>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f925508af10>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f925508afd0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:33:49,407 INFO [ omero.gateway] (MainThread) created connection (uuid=4e5810a1-6fd2-4a91-b3f4-86a5fda26acf)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=4e5810a1-6fd2-4a91-b3f4-86a5fda26acf)
06:34:44 ______________ ERROR at setup of TestRDefs.testUnregisterService _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f920db28940>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f920db285e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testUnregisterService>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f920db28940>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f920db285e0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:36:00,476 INFO [ omero.gateway] (MainThread) created connection (uuid=afb30043-7951-48f8-99c9-86fcd021005f)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=afb30043-7951-48f8-99c9-86fcd021005f)
06:34:44 _______________ ERROR at setup of TestRDefs.testRegisterService ________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e6137070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e6137670>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testRegisterService>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e6137070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e6137670>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:38:11,550 INFO [ omero.gateway] (MainThread) created connection (uuid=b5f93f20-03dd-4977-9df8-f6a30ef63d67)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=b5f93f20-03dd-4977-9df8-f6a30ef63d67)
06:34:44 ___________________ ERROR at setup of TestRDefs.testCloseRE ____________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a8d460>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a8d820>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testCloseRE>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f9173995d00>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e5a8d460>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5a8d820>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:40:22,622 INFO [ omero.gateway] (MainThread) created connection (uuid=3c29a7df-d7fc-4cfc-8a96-1896524f743a)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=3c29a7df-d7fc-4cfc-8a96-1896524f743a)
06:34:44 _____________ ERROR at setup of TestWrapper.testAllObjectsWrapped ______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e719b070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92143ed850>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testAllObjectsWrapped>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91e68d0a30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e719b070>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f92143ed850>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:46:28,336 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:28,342 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:28,379 INFO [ omero.gateway] (MainThread) created connection (uuid=8034dec9-7f71-4e72-9c47-49552d071d8a)
06:34:44 2024-10-26 06:46:28,815 INFO [ omero.gateway] (MainThread) created connection (uuid=d7a358b4-c755-4906-80c5-9e9d26cfc27e)
06:34:44 2024-10-26 06:46:28,849 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:28,886 INFO [ omero.gateway] (MainThread) created connection (uuid=d31a6323-c3c3-46d5-80c1-d39cbeea742d)
06:34:44 2024-10-26 06:46:28,922 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:28,958 INFO [ omero.gateway] (MainThread) created connection (uuid=58dd3e62-97aa-4d88-ae4b-e89a8b06df61)
06:34:44 2024-10-26 06:46:28,998 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,035 INFO [ omero.gateway] (MainThread) created connection (uuid=6520094f-7974-4289-a3f9-0c48475d10b1)
06:34:44 2024-10-26 06:46:29,076 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,113 INFO [ omero.gateway] (MainThread) created connection (uuid=2fbec6dc-ff3c-4147-8c50-aedd00078cbd)
06:34:44 2024-10-26 06:46:29,152 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,188 INFO [ omero.gateway] (MainThread) created connection (uuid=c126c5f3-2e01-4aa0-a03b-f517c99feb8a)
06:34:44 2024-10-26 06:46:29,228 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,265 INFO [ omero.gateway] (MainThread) created connection (uuid=1101811e-6a5f-4c1a-bb6b-01ccdb8ad395)
06:34:44 2024-10-26 06:46:29,314 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,350 INFO [ omero.gateway] (MainThread) created connection (uuid=857cc420-4658-4dfb-a54c-1fb5e7995297)
06:34:44 2024-10-26 06:46:29,400 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,437 INFO [ omero.gateway] (MainThread) created connection (uuid=37b5a67c-f747-422c-b977-f52d07b780c3)
06:34:44 2024-10-26 06:46:29,483 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,486 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:46:29,524 INFO [ omero.gateway] (MainThread) created connection (uuid=58c89fb6-0d6e-4505-b2e9-b3d4fb5cddeb)
06:34:44 2024-10-26 06:46:29,595 INFO [ omero.gateway] (MainThread) created connection (uuid=80050a00-7942-44d1-af3f-066ab9a78eec)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=8034dec9-7f71-4e72-9c47-49552d071d8a)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=d7a358b4-c755-4906-80c5-9e9d26cfc27e)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=d31a6323-c3c3-46d5-80c1-d39cbeea742d)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=58dd3e62-97aa-4d88-ae4b-e89a8b06df61)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=6520094f-7974-4289-a3f9-0c48475d10b1)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2fbec6dc-ff3c-4147-8c50-aedd00078cbd)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=c126c5f3-2e01-4aa0-a03b-f517c99feb8a)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=1101811e-6a5f-4c1a-bb6b-01ccdb8ad395)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=857cc420-4658-4dfb-a54c-1fb5e7995297)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=37b5a67c-f747-422c-b977-f52d07b780c3)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=58c89fb6-0d6e-4505-b2e9-b3d4fb5cddeb)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=80050a00-7942-44d1-af3f-066ab9a78eec)
06:34:44 _______________ ERROR at setup of TestWrapper.testDatasetWrapper _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f921468b1c0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e71c1a00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testDatasetWrapper>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91e68d0a30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f921468b1c0>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e71c1a00>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:48:39,018 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:48:39,061 INFO [ omero.gateway] (MainThread) created connection (uuid=d370841e-e4d7-4d44-8605-7be6dda1b3a1)
06:34:44 2024-10-26 06:48:39,139 INFO [ omero.gateway] (MainThread) created connection (uuid=2f89eca7-b9dd-42e1-bda7-57e245acaf2e)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=d370841e-e4d7-4d44-8605-7be6dda1b3a1)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2f89eca7-b9dd-42e1-bda7-57e245acaf2e)
06:34:44 _______________ ERROR at setup of TestWrapper.testDetailsWrapper _______________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e7197c70>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e7197ca0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 request = <SubRequest 'author_testimg' for <Function testDetailsWrapper>>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f91e68d0a30>
06:34:44 @pytest.fixture(scope='function')
06:34:44 def author_testimg(request, gatewaywrapper):
06:34:44 """
06:34:44 logs in as Author and returns the test image, creating it first if needed.
06:34:44 """
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > rv = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e7197c70>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e7197ca0>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ---------------------------- Captured stderr setup -----------------------------
06:34:44 2024-10-26 06:50:49,372 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:50:49,425 INFO [ omero.gateway] (MainThread) created connection (uuid=2845cc0d-285a-4b48-9ac7-c05be5e1aac9)
06:34:44 2024-10-26 06:50:49,524 INFO [ omero.gateway] (MainThread) created connection (uuid=61f6de78-4e54-47c8-aba7-180b5d558eae)
06:34:44 I<
06:34:44 ------------------------------ Captured log setup ------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2845cc0d-285a-4b48-9ac7-c05be5e1aac9)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=61f6de78-4e54-47c8-aba7-180b5d558eae)
06:34:44 =================================== FAILURES ===================================
06:34:44 _________________________ TestAdmin.test_checkupgrade0 _________________________
06:34:44 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f9255d478e0>
06:34:44 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f922dd81130>
06:34:44 def test_checkupgrade0(self, monkeypatch):
06:34:44 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:34:44 createUpgradeCheckClass("999999999.0.0"))
06:34:44 self.args.append("checkupgrade")
06:34:44 > self.go()
06:34:44 test/integration/clitest/test_admin.py:66:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 test/integration/clitest/test_admin.py:60: in go
06:34:44 self.cli.invoke(self.args, strict=True)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:34:44 self.assertRC()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <omero.cli.CLI object at 0x7f925b287be0>
06:34:44 def assertRC(self):
06:34:44 if self.rv != 0:
06:34:44 > raise NonZeroReturnCode(self.rv, "assert failed")
06:34:44 E omero.cli.NonZeroReturnCode: assert failed
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:34:44 ----------------------------- Captured stdout call -----------------------------
06:34:44 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f922dd47190>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 Error printing text
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f922dd47190>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 _________________________ TestAdmin.test_checkupgrade1 _________________________
06:34:44 self = <test.integration.clitest.test_admin.TestAdmin object at 0x7f9255d47c40>
06:34:44 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f921a188c10>
06:34:44 def test_checkupgrade1(self, monkeypatch):
06:34:44 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:34:44 createUpgradeCheckClass("0.0.0"))
06:34:44 self.args.append("checkupgrade")
06:34:44 with pytest.raises(NonZeroReturnCode) as exc:
06:34:44 self.go()
06:34:44 > assert exc.value.rv == 1
06:34:44 E AssertionError: assert 2 == 1
06:34:44 E + where 2 = NonZeroReturnCode('assert failed').rv
06:34:44 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:34:44 test/integration/clitest/test_admin.py:74: AssertionError
06:34:44 ----------------------------- Captured stdout call -----------------------------
06:34:44 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f922db032b0>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 Error printing text
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f922db032b0>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 _________________ TestAdminRestrictedAdmin.test_checkupgrade0 __________________
06:34:44 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f9255d53af0>
06:34:44 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f922651dbb0>
06:34:44 def test_checkupgrade0(self, monkeypatch):
06:34:44 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:34:44 createUpgradeCheckClass("999999999.0.0"))
06:34:44 self.args.append("checkupgrade")
06:34:44 > self.cli.invoke(self.args, strict=True)
06:34:44 test/integration/clitest/test_admin.py:134:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
06:34:44 self.assertRC()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <omero.cli.CLI object at 0x7f921a19b160>
06:34:44 def assertRC(self):
06:34:44 if self.rv != 0:
06:34:44 > raise NonZeroReturnCode(self.rv, "assert failed")
06:34:44 E omero.cli.NonZeroReturnCode: assert failed
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
06:34:44 ----------------------------- Captured stdout call -----------------------------
06:34:44 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f92264d4070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 Error printing text
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=999999999.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f92264d4070>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 _________________ TestAdminRestrictedAdmin.test_checkupgrade1 __________________
06:34:44 self = <test.integration.clitest.test_admin.TestAdminRestrictedAdmin object at 0x7f9255d53eb0>
06:34:44 monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f92265152e0>
06:34:44 def test_checkupgrade1(self, monkeypatch):
06:34:44 monkeypatch.setattr(omero.plugins.prefs, "UpgradeCheck",
06:34:44 createUpgradeCheckClass("0.0.0"))
06:34:44 self.args.append("checkupgrade")
06:34:44 with pytest.raises(NonZeroReturnCode) as exc:
06:34:44 self.cli.invoke(self.args, strict=True)
06:34:44 > assert exc.value.rv == 1
06:34:44 E AssertionError: assert 2 == 1
06:34:44 E + where 2 = NonZeroReturnCode('assert failed').rv
06:34:44 E + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:34:44 test/integration/clitest/test_admin.py:142: AssertionError
06:34:44 ----------------------------- Captured stdout call -----------------------------
06:34:44 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f92264eb040>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 Error printing text
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=0.0.0&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f92264eb040>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 _____________ TestGetObject.testGetObjectsByMapAnnotations[Image] ______________
06:34:44 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f925554f070>
06:34:44 datatype = 'Image'
06:34:44 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:34:44 'Screen', 'Plate'])
06:34:44 def testGetObjectsByMapAnnotations(self, datatype):
06:34:44 > client, exp = self.new_client_and_user()
06:34:44 test/integration/gatewaytest/test_get_objects.py:767:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:34:44 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:34:44 admin_service = cls.root.getSession().getAdminService()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = session-fd471155-3174-4ec6-92ef-f028f7b06870/b0cb5337-cffb-41b5-9313-b09a46dcbb5b -t -e 1.1 @ BlitzAdapters
06:34:44 _ctx = None
06:34:44 def getAdminService(self, _ctx=None):
06:34:44 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:34:44 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 E recv() returned zero
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:34:44 ____________ TestGetObject.testGetObjectsByMapAnnotations[Dataset] _____________
06:34:44 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f92553bd9d0>
06:34:44 datatype = 'Dataset'
06:34:44 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:34:44 'Screen', 'Plate'])
06:34:44 def testGetObjectsByMapAnnotations(self, datatype):
06:34:44 > client, exp = self.new_client_and_user()
06:34:44 test/integration/gatewaytest/test_get_objects.py:767:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:34:44 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:34:44 admin_service = cls.root.getSession().getAdminService()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = session-fd471155-3174-4ec6-92ef-f028f7b06870/b0cb5337-cffb-41b5-9313-b09a46dcbb5b -t -e 1.1 @ BlitzAdapters
06:34:44 _ctx = None
06:34:44 def getAdminService(self, _ctx=None):
06:34:44 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:34:44 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 E recv() returned zero
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:34:44 ____________ TestGetObject.testGetObjectsByMapAnnotations[Project] _____________
06:34:44 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f9254ec70a0>
06:34:44 datatype = 'Project'
06:34:44 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:34:44 'Screen', 'Plate'])
06:34:44 def testGetObjectsByMapAnnotations(self, datatype):
06:34:44 > client, exp = self.new_client_and_user()
06:34:44 test/integration/gatewaytest/test_get_objects.py:767:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:34:44 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:34:44 admin_service = cls.root.getSession().getAdminService()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = session-fd471155-3174-4ec6-92ef-f028f7b06870/b0cb5337-cffb-41b5-9313-b09a46dcbb5b -t -e 1.1 @ BlitzAdapters
06:34:44 _ctx = None
06:34:44 def getAdminService(self, _ctx=None):
06:34:44 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:34:44 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 E recv() returned zero
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:34:44 _____________ TestGetObject.testGetObjectsByMapAnnotations[Screen] _____________
06:34:44 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f9254ec7160>
06:34:44 datatype = 'Screen'
06:34:44 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:34:44 'Screen', 'Plate'])
06:34:44 def testGetObjectsByMapAnnotations(self, datatype):
06:34:44 > client, exp = self.new_client_and_user()
06:34:44 test/integration/gatewaytest/test_get_objects.py:767:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:34:44 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:34:44 admin_service = cls.root.getSession().getAdminService()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = session-fd471155-3174-4ec6-92ef-f028f7b06870/b0cb5337-cffb-41b5-9313-b09a46dcbb5b -t -e 1.1 @ BlitzAdapters
06:34:44 _ctx = None
06:34:44 def getAdminService(self, _ctx=None):
06:34:44 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:34:44 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 E recv() returned zero
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:34:44 _____________ TestGetObject.testGetObjectsByMapAnnotations[Plate] ______________
06:34:44 self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7f9254ec7220>
06:34:44 datatype = 'Plate'
06:34:44 @pytest.mark.parametrize("datatype", ['Image', 'Dataset', 'Project',
06:34:44 'Screen', 'Plate'])
06:34:44 def testGetObjectsByMapAnnotations(self, datatype):
06:34:44 > client, exp = self.new_client_and_user()
06:34:44 test/integration/gatewaytest/test_get_objects.py:767:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:604: in new_client_and_user
06:34:44 user = self.new_user(group, owner=owner, system=system, perms=perms,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:526: in new_user
06:34:44 admin_service = cls.root.getSession().getAdminService()
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = session-fd471155-3174-4ec6-92ef-f028f7b06870/b0cb5337-cffb-41b5-9313-b09a46dcbb5b -t -e 1.1 @ BlitzAdapters
06:34:44 _ctx = None
06:34:44 def getAdminService(self, _ctx=None):
06:34:44 > return _M_omero.api.ServiceFactory._op_getAdminService.invoke(self, ((), _ctx))
06:34:44 E Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 E recv() returned zero
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero_API_ice.py:704: ConnectionLostException
06:34:44 --------------------------- Captured stderr teardown ---------------------------
06:34:44 2024-10-26 04:54:45,674 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 *2024-10-26 04:54:45,727 INFO [ omero.gateway] (MainThread) created connection (uuid=9f96bec2-c201-499d-8adb-65267988149a)
06:34:44 *2024-10-26 04:54:45,850 INFO [ omero.gateway] (MainThread) created connection (uuid=13d333b6-4563-4704-b922-c84b603ce79d)
06:34:44 *2024-10-26 04:54:45,967 INFO [ omero.gateway] (MainThread) created connection (uuid=e018bc30-2991-4091-982b-8becf704de53)
06:34:44 *2024-10-26 04:54:46,059 INFO [ omero.gateway] (MainThread) created connection (uuid=624ea8f0-23e4-4f89-ab15-ac57cdd73f95)
06:34:44 *2024-10-26 04:54:46,157 INFO [ omero.gateway] (MainThread) created connection (uuid=2a2d34df-476d-4116-90f9-6334c5230122)
06:34:44 *2024-10-26 04:54:46,255 INFO [ omero.gateway] (MainThread) created connection (uuid=db060f6e-991f-404a-8b1b-3da0b684840b)
06:34:44 2024-10-26 04:54:46,306 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:54:46,312 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:54:46,359 INFO [ omero.gateway] (MainThread) created connection (uuid=61dfbf32-b46c-4141-b3fc-8599ec674d67)
06:34:44 2024-10-26 04:54:46,655 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 04:54:46,659 WARNI [ omero.client] (MainThread) Cannot get session service for killSession. Using closeSession
06:34:44 ---------------------------- Captured log teardown -----------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=9f96bec2-c201-499d-8adb-65267988149a)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=13d333b6-4563-4704-b922-c84b603ce79d)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=e018bc30-2991-4091-982b-8becf704de53)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=624ea8f0-23e4-4f89-ab15-ac57cdd73f95)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=2a2d34df-476d-4116-90f9-6334c5230122)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=db060f6e-991f-404a-8b1b-3da0b684840b)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=61dfbf32-b46c-4141-b3fc-8599ec674d67)
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 WARNING omero.client:clients.py:1095 Cannot get session service for killSession. Using closeSession
06:34:44 _____________________________ TestUser.testSaveAs ______________________________
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e607cb20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5743730>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 > h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 /usr/lib64/python3.9/urllib/request.py:1346:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 /usr/lib64/python3.9/http/client.py:1285: in request
06:34:44 self._send_request(method, url, body, headers, encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1331: in _send_request
06:34:44 self.endheaders(body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1280: in endheaders
06:34:44 self._send_output(message_body, encode_chunked=encode_chunked)
06:34:44 /usr/lib64/python3.9/http/client.py:1040: in _send_output
06:34:44 self.send(msg)
06:34:44 /usr/lib64/python3.9/http/client.py:980: in send
06:34:44 self.connect()
06:34:44 /usr/lib64/python3.9/http/client.py:1447: in connect
06:34:44 super().connect()
06:34:44 /usr/lib64/python3.9/http/client.py:946: in connect
06:34:44 self.sock = self._create_connection(
06:34:44 /usr/lib64/python3.9/socket.py:844: in create_connection
06:34:44 raise err
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 address = ('downloads.openmicroscopy.org', 443)
06:34:44 timeout = <object object at 0x7f925a404b40>, source_address = None
06:34:44 def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
06:34:44 source_address=None):
06:34:44 """Connect to *address* and return the socket object.
06:34:44 Convenience function. Connect to *address* (a 2-tuple ``(host,
06:34:44 port)``) and return the socket object. Passing the optional
06:34:44 *timeout* parameter will set the timeout on the socket instance
06:34:44 before attempting to connect. If no *timeout* is supplied, the
06:34:44 global default timeout setting returned by :func:`getdefaulttimeout`
06:34:44 is used. If *source_address* is set it must be a tuple of (host, port)
06:34:44 for the socket to bind as a source address before making the connection.
06:34:44 A host of '' or port 0 tells the OS to use the default.
06:34:44 """
06:34:44 host, port = address
06:34:44 err = None
06:34:44 for res in getaddrinfo(host, port, 0, SOCK_STREAM):
06:34:44 af, socktype, proto, canonname, sa = res
06:34:44 sock = None
06:34:44 try:
06:34:44 sock = socket(af, socktype, proto)
06:34:44 if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
06:34:44 sock.settimeout(timeout)
06:34:44 if source_address:
06:34:44 sock.bind(source_address)
06:34:44 > sock.connect(sa)
06:34:44 E TimeoutError: [Errno 110] Connection timed out
06:34:44 /usr/lib64/python3.9/socket.py:832: TimeoutError
06:34:44 During handling of the above exception, another exception occurred:
06:34:44 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f92555854c0>
06:34:44 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f92007b9130>
06:34:44 def testSaveAs(self, gatewaywrapper):
06:34:44 for u in (gatewaywrapper.AUTHOR, gatewaywrapper.ADMIN):
06:34:44 # Test image should be owned by author
06:34:44 gatewaywrapper.loginAsAuthor()
06:34:44 > image = gatewaywrapper.getTestImage(autocreate=True)
06:34:44 test/integration/gatewaytest/test_user.py:34:
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
06:34:44 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
06:34:44 i = IMAGES[alias].create()
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419: in create
06:34:44 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
06:34:44 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
06:34:44 return opener.open(url, data, timeout)
06:34:44 /usr/lib64/python3.9/urllib/request.py:517: in open
06:34:44 response = self._open(req, data)
06:34:44 /usr/lib64/python3.9/urllib/request.py:534: in _open
06:34:44 result = self._call_chain(self.handle_open, protocol, protocol +
06:34:44 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
06:34:44 result = func(*args)
06:34:44 /usr/lib64/python3.9/urllib/request.py:1389: in https_open
06:34:44 return self.do_open(http.client.HTTPSConnection, req,
06:34:44 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
06:34:44 self = <urllib.request.HTTPSHandler object at 0x7f91fd3618e0>
06:34:44 http_class = <class 'http.client.HTTPSConnection'>
06:34:44 req = <urllib.request.Request object at 0x7f91e607cb20>
06:34:44 http_conn_args = {'check_hostname': None, 'context': None}
06:34:44 host = 'downloads.openmicroscopy.org'
06:34:44 h = <http.client.HTTPSConnection object at 0x7f91e5743730>
06:34:44 def do_open(self, http_class, req, **http_conn_args):
06:34:44 """Return an HTTPResponse object for the request, using http_class.
06:34:44 http_class must implement the HTTPConnection API from http.client.
06:34:44 """
06:34:44 host = req.host
06:34:44 if not host:
06:34:44 raise URLError('no host given')
06:34:44 # will parse host:port
06:34:44 h = http_class(host, timeout=req.timeout, **http_conn_args)
06:34:44 h.set_debuglevel(self._debuglevel)
06:34:44 headers = dict(req.unredirected_hdrs)
06:34:44 headers.update({k: v for k, v in req.headers.items()
06:34:44 if k not in headers})
06:34:44 # TODO(jhylton): Should this be redesigned to handle
06:34:44 # persistent connections?
06:34:44 # We want to make an HTTP/1.1 request, but the addinfourl
06:34:44 # class isn't prepared to deal with a persistent connection.
06:34:44 # It will try to read all remaining data from the socket,
06:34:44 # which will block while the server waits for the next request.
06:34:44 # So make sure the connection gets closed after the (only)
06:34:44 # request.
06:34:44 headers["Connection"] = "close"
06:34:44 headers = {name.title(): val for name, val in headers.items()}
06:34:44 if req._tunnel_host:
06:34:44 tunnel_headers = {}
06:34:44 proxy_auth_hdr = "Proxy-Authorization"
06:34:44 if proxy_auth_hdr in headers:
06:34:44 tunnel_headers[proxy_auth_hdr] = headers[proxy_auth_hdr]
06:34:44 # Proxy-Authorization should not be sent to origin
06:34:44 # server.
06:34:44 del headers[proxy_auth_hdr]
06:34:44 h.set_tunnel(req._tunnel_host, headers=tunnel_headers)
06:34:44 try:
06:34:44 try:
06:34:44 h.request(req.get_method(), req.selector, req.data, headers,
06:34:44 encode_chunked=req.has_header('Transfer-encoding'))
06:34:44 except OSError as err: # timeout error
06:34:44 > raise URLError(err)
06:34:44 E urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 /usr/lib64/python3.9/urllib/request.py:1349: URLError
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 2024-10-26 06:44:05,663 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
06:34:44 2024-10-26 06:44:05,700 INFO [ omero.gateway] (MainThread) created connection (uuid=84983a5a-eca8-4aef-925b-be22c26bf306)
06:34:44 2024-10-26 06:44:05,780 INFO [ omero.gateway] (MainThread) created connection (uuid=8484c880-1172-42a7-ba01-f3f8b29fbb49)
06:34:44 I<
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=84983a5a-eca8-4aef-925b-be22c26bf306)
06:34:44 INFO omero.gateway:__init__.py:2243 created connection (uuid=8484c880-1172-42a7-ba01-f3f8b29fbb49)
06:34:44 __________________________ TestUpgradeCheck.testReal ___________________________
06:34:44 self = <test.integration.test_util.TestUpgradeCheck object at 0x7f924e39da60>
06:34:44 def testReal(self):
06:34:44 uc = UpgradeCheck("test", version="test")
06:34:44 uc.run()
06:34:44 > assert uc.isUpgradeNeeded() is True
06:34:44 E assert False is True
06:34:44 E + where False = isUpgradeNeeded()
06:34:44 E + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f91fd59e580>.isUpgradeNeeded
06:34:44 test/integration/test_util.py:35: AssertionError
06:34:44 ----------------------------- Captured stderr call -----------------------------
06:34:44 2024-10-26 07:34:43,993 ERROR [ omero.util.UpgradeCheck] (MainThread) HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f91fd59e250>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 ------------------------------ Captured log call -------------------------------
06:34:44 ERROR omero.util.UpgradeCheck:upgrade_check.py:141 HTTPConnectionPool(host='upgrade.openmicroscopy.org.uk', port=80): Max retries exceeded with url: /?version=test&os.name=Linux&os.arch=x86_64&os.version=Linux-5.14.0-427.40.1.el9_4.x86_64-x86_64-with-glibc2.34&python.version=3.9.18&python.compiler=GCC+11.4.1+20231218+%28Red+Hat+11.4.1-3%29&python.build=main&python.build=Aug+23+2024+00%3A00%3A00 (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f91fd59e250>, 'Connection to upgrade.openmicroscopy.org.uk timed out. (connect timeout=6.0)'))
06:34:44 =============================== warnings summary ===============================
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:34:44 import sys, string, imp, os, threading, warnings, datetime
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:34:44 warnings.warn(
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:34:44 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:34:44 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:34:44 from pkg_resources import DistributionNotFound, get_distribution
06:34:44 OmeroPy/test/integration/clitest/test_admin.py: 2 warnings
06:34:44 OmeroPy/test/integration/clitest/test_chgrp.py: 116 warnings
06:34:44 OmeroPy/test/integration/clitest/test_chown.py: 76 warnings
06:34:44 OmeroPy/test/integration/clitest/test_cleanse.py: 7 warnings
06:34:44 OmeroPy/test/integration/clitest/test_delete.py: 81 warnings
06:34:44 OmeroPy/test/integration/clitest/test_download.py: 91 warnings
06:34:44 OmeroPy/test/integration/clitest/test_duplicate.py: 18 warnings
06:34:44 OmeroPy/test/integration/clitest/test_fs.py: 26 warnings
06:34:44 OmeroPy/test/integration/clitest/test_group.py: 154 warnings
06:34:44 OmeroPy/test/integration/clitest/test_import.py: 189 warnings
06:34:44 OmeroPy/test/integration/clitest/test_import_bulk.py: 1 warning
06:34:44 OmeroPy/test/integration/clitest/test_ldap.py: 5 warnings
06:34:44 OmeroPy/test/integration/clitest/test_metadata.py: 10 warnings
06:34:44 OmeroPy/test/integration/clitest/test_obj.py: 56 warnings
06:34:44 OmeroPy/test/integration/clitest/test_pyramids.py: 10 warnings
06:34:44 OmeroPy/test/integration/clitest/test_script.py: 10 warnings
06:34:44 OmeroPy/test/integration/clitest/test_search.py: 16 warnings
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py: 121 warnings
06:34:44 OmeroPy/test/integration/clitest/test_tag.py: 57 warnings
06:34:44 OmeroPy/test/integration/clitest/test_upload.py: 6 warnings
06:34:44 OmeroPy/test/integration/clitest/test_user.py: 183 warnings
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1]
06:34:44 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2]
06:34:44 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/cli.py:2105: DeprecationWarning:
06:34:44 Using '--dry-run'. Future versions will switch to '--force'. Explicitly set the parameter for portability
06:34:44 warnings.warn("\nUsing '--dry-run'.\
06:34:44 OmeroPy/test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py:131: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testBulk1') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_PixelsI.py:37: DeprecationWarning: Pixels.relatedTo is deprecated
06:34:44 warnings.warn(item + " is deprecated", DeprecationWarning)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLogin_None_True_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLogin_None_False_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLogin_300_True_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLogin_300_False_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginAs_rw_____0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginAs_rwr____0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginAs_rwra___0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginAs_rwrw___0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginMultiGroup_True_True_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginMultiGroup_True_False0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginMultiGroup_False_True0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testLoginMultiGroup_False_Fals0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testGroup
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testGroup0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testTimeout
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testTimeout0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testFile
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testFile0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testKey
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testKey0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[user]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testWho_user_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[root]
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/testWho_root_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/test_open0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/test_open_with_id0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/test_open_restricted_admin_no_0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/test_open_restricted_admin_sud0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_close
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-24/test_close0') (type: LocalPath); converted to str implicitly
06:34:44 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
06:34:44 OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir returned '3b492ccc-71e5-45ec-af4c-bd370f6640a2_3717/40f8e274-d2ae-4379-b772-b76c1027686b', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/gatewaytest/test_annotation.py: 4 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_chmod.py: 28 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_connection.py: 10 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 3 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_image_wrapper.py: 3 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_user.py: 1 warning
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:34:44 logger.warn("%s on %s to <%s> %s(%r, %r)",
06:34:44 OmeroPy/test/integration/gatewaytest/test_annotation.py: 13 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_chgrp.py: 4 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_chmod.py: 3 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 25 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py: 5 warnings
06:34:44 OmeroPy/test/integration/gatewaytest/test_services.py: 2 warnings
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3824: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:34:44 convertedPlane = byteSwappedPlane.tostring()
06:34:44 OmeroPy/test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4381: DeprecationWarning: Deprecated. Use deleteObject() or deleteObjects()
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:34:44 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
06:34:44 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:34:44 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:10236: DeprecationWarning: Deprecated. Use getImportedImageFiles()
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:34:44 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3048: DeprecationWarning: Deprecated. Use ExperimenterGroupWrapper.groupSummary()
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/gatewaytest/test_ticket10618.py: 24 warnings
06:34:44 OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py: 1 warning
06:34:44 OmeroPy/test/integration/scriptstest/test_script_utils.py: 150 warnings
06:34:44 OmeroPy/test/integration/test_exporter.py: 1 warning
06:34:44 OmeroPy/test/integration/test_ishare.py: 3 warnings
06:34:44 OmeroPy/test/integration/test_librarytest.py: 31 warnings
06:34:44 OmeroPy/test/integration/test_permissions.py: 2 warnings
06:34:44 OmeroPy/test/integration/test_render.py: 1 warning
06:34:44 OmeroPy/test/integration/test_rois.py: 2 warnings
06:34:44 OmeroPy/test/integration/test_scripts.py: 1 warning
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py: 55 warnings
06:34:44 OmeroPy/test/integration/test_tickets1000.py: 1 warning
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:34:44 converted_plane = byte_swapped_plane.tostring()
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:905: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:34:44 log.warn("PlateColumn is unimplemented")
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:955: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:34:44 log.warn(
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
06:34:44 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:1389: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:34:44 log.warn("Invalid Id:%d found in row %s", row[n], row)
06:34:44 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:34:44 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
06:34:44 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:34:44 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
06:34:44 <string>:77: DeprecationWarning: This plugin is deprecated as of OMERO 5.5.0. Use the upload CLI plugin available from https://pypi.org/project/omero-upload/ instead.
06:34:44 OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript returned 4958, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f925a9dda60>
06:34:44 Traceback (most recent call last):
06:34:44 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:34:44 self.close()
06:34:44 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:34:44 unlink(self.name)
06:34:44 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpe4du6ovw.tiff'
06:34:44 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:34:44 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f925a9dda60>
06:34:44 Traceback (most recent call last):
06:34:44 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
06:34:44 self.close()
06:34:44 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
06:34:44 unlink(self.name)
06:34:44 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp5zci9u1_.foo'
06:34:44 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
06:34:44 OmeroPy/test/integration/scriptstest/test_script_utils.py: 200 warnings
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1131: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
06:34:44 converted_row = row.tostring()
06:34:44 OmeroPy/test/integration/tablestest/test_backwards_compatibility.py: 12 warnings
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py:84: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:34:44 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable returned object #0 (::omero::model::OriginalFile)
06:34:44 {
06:34:44 _id = object #1 (::omero::RLong)
06:34:44 {
06:34:44 _val = 5014
06:34:44 }
06:34:44 _details = object #2 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = object #3 (::omero::model::Experimenter)
06:34:44 {
06:34:44 _id = object #4 (::omero::RLong)
06:34:44 {
06:34:44 _val = 3847
06:34:44 }
06:34:44 _details = object #5 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #6 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = True
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #7 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #8 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = object #9 (::omero::RInt)
06:34:44 {
06:34:44 _val = 0
06:34:44 }
06:34:44 _groupExperimenterMapSeq =
06:34:44 {
06:34:44 }
06:34:44 _groupExperimenterMapLoaded = False
06:34:44 _omeName = object #10 (::omero::RString)
06:34:44 {
06:34:44 _val = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 }
06:34:44 _firstName = object #11 (::omero::RString)
06:34:44 {
06:34:44 _val = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 }
06:34:44 _middleName = <nil>
06:34:44 _lastName = object #12 (::omero::RString)
06:34:44 {
06:34:44 _val = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 }
06:34:44 _institution = <nil>
06:34:44 _ldap = object #13 (::omero::RBool)
06:34:44 {
06:34:44 _val = False
06:34:44 }
06:34:44 _email = object #14 (::omero::RString)
06:34:44 {
06:34:44 _val =
06:34:44 }
06:34:44 _config =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 }
06:34:44 _group = object #15 (::omero::model::ExperimenterGroup)
06:34:44 {
06:34:44 _id = object #16 (::omero::RLong)
06:34:44 {
06:34:44 _val = 2824
06:34:44 }
06:34:44 _details = object #17 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #18 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = True
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #19 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #20 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = <object #9>
06:34:44 _name = object #21 (::omero::RString)
06:34:44 {
06:34:44 _val = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 }
06:34:44 _ldap = <object #13>
06:34:44 _groupExperimenterMapSeq =
06:34:44 {
06:34:44 }
06:34:44 _groupExperimenterMapLoaded = False
06:34:44 _config =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _description = <nil>
06:34:44 }
06:34:44 _creationEvent = object #22 (::omero::model::Event)
06:34:44 {
06:34:44 _id = object #23 (::omero::RLong)
06:34:44 {
06:34:44 _val = 80670
06:34:44 }
06:34:44 _details = object #24 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #25 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = True
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #26 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #27 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _status = <nil>
06:34:44 _time = object #28 (::omero::RTime)
06:34:44 {
06:34:44 _val = 1729922347967
06:34:44 }
06:34:44 _experimenter = <object #3>
06:34:44 _experimenterGroup = <object #15>
06:34:44 _type = object #29 (::omero::model::EventType)
06:34:44 {
06:34:44 _id = object #30 (::omero::RLong)
06:34:44 {
06:34:44 _val = 4
06:34:44 }
06:34:44 _details = object #31 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #32 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = False
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #33 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #34 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _value = object #35 (::omero::RString)
06:34:44 {
06:34:44 _val = User
06:34:44 }
06:34:44 }
06:34:44 _containingEvent = <nil>
06:34:44 _logsSeq =
06:34:44 {
06:34:44 }
06:34:44 _logsLoaded = True
06:34:44 _session = object #36 (::omero::model::Session)
06:34:44 {
06:34:44 _id = object #37 (::omero::RLong)
06:34:44 {
06:34:44 _val = 8772
06:34:44 }
06:34:44 _details = object #38 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #39 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = False
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #40 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #41 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = <object #9>
06:34:44 _node = object #42 (::omero::model::Node)
06:34:44 {
06:34:44 _id = object #43 (::omero::RLong)
06:34:44 {
06:34:44 _val = 1
06:34:44 }
06:34:44 _details = <nil>
06:34:44 _loaded = False
06:34:44 _version = <nil>
06:34:44 _sessionsSeq =
06:34:44 {
06:34:44 }
06:34:44 _sessionsLoaded = False
06:34:44 _uuid = <nil>
06:34:44 _conn = <nil>
06:34:44 _up = <nil>
06:34:44 _down = <nil>
06:34:44 _scale = <nil>
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 }
06:34:44 _uuid = object #44 (::omero::RString)
06:34:44 {
06:34:44 _val = ********
06:34:44 }
06:34:44 _owner = <object #3>
06:34:44 _sudoer = <nil>
06:34:44 _timeToIdle = object #45 (::omero::RLong)
06:34:44 {
06:34:44 _val = 600000
06:34:44 }
06:34:44 _timeToLive = object #46 (::omero::RLong)
06:34:44 {
06:34:44 _val = 0
06:34:44 }
06:34:44 _started = object #47 (::omero::RTime)
06:34:44 {
06:34:44 _val = 1729922347932
06:34:44 }
06:34:44 _closed = <nil>
06:34:44 _message = object #48 (::omero::RString)
06:34:44 {
06:34:44 _val = Initial message.
06:34:44 }
06:34:44 _defaultEventType = object #49 (::omero::RString)
06:34:44 {
06:34:44 _val = User
06:34:44 }
06:34:44 _userAgent = object #50 (::omero::RString)
06:34:44 {
06:34:44 _val = OMERO.py.test
06:34:44 }
06:34:44 _userIP = <nil>
06:34:44 _eventsSeq =
06:34:44 {
06:34:44 }
06:34:44 _eventsLoaded = False
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = True
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _updateEvent = <object #22>
06:34:44 _permissions = object #51 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = False
06:34:44 [2] = False
06:34:44 [3] = False
06:34:44 [4] = False
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 9f77c19b-4a71-452d-98ec-b6b0d062b33f
06:34:44 key = omero.session.uuid
06:34:44 value = 1be5c822-6176-4dab-9f1d-a3d5cd2dbf9d
06:34:44 }
06:34:44 _event = object #52 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 8772
06:34:44 sessionUuid = *********
06:34:44 userId = 3847
06:34:44 userName = 1851dec2-5e78-42dc-a129-f0828035a56d
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 2824
06:34:44 groupName = 51b380c5-09c2-49f0-90a4-9e86a52dc0f3
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = 80670
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 2824
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #53 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = <nil>
06:34:44 _pixelsFileMapsSeq =
06:34:44 {
06:34:44 }
06:34:44 _pixelsFileMapsLoaded = True
06:34:44 _pixelsFileMapsCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _path = object #54 (::omero::RString)
06:34:44 {
06:34:44 _val = /test
06:34:44 }
06:34:44 _repo = <nil>
06:34:44 _size = <nil>
06:34:44 _atime = object #55 (::omero::RTime)
06:34:44 {
06:34:44 _val = 1729922347965
06:34:44 }
06:34:44 _mtime = object #56 (::omero::RTime)
06:34:44 {
06:34:44 _val = 1729922347965
06:34:44 }
06:34:44 _ctime = object #57 (::omero::RTime)
06:34:44 {
06:34:44 _val = 1729922347965
06:34:44 }
06:34:44 _hasher = <nil>
06:34:44 _hash = <nil>
06:34:44 _mimetype = object #58 (::omero::RString)
06:34:44 {
06:34:44 _val = OMERO.tables
06:34:44 }
06:34:44 _filesetEntriesSeq =
06:34:44 {
06:34:44 }
06:34:44 _filesetEntriesLoaded = True
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = True
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _name = object #59 (::omero::RString)
06:34:44 {
06:34:44 _val = /test
06:34:44 }
06:34:44 }, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:34:44 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_service.py:54: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:34:44 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
06:34:44 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_tables.py:55: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
06:34:44 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
06:34:44 OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper returned '00420599-a40d-4ff2-8cb3-9de0f279c30a', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_isession.py::TestISession::testSessionWithIP[127.0.0.1]
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_SessionI.py:37: DeprecationWarning: Session.userIP is deprecated
06:34:44 warnings.warn(item + " is deprecated", DeprecationWarning)
06:34:44 OmeroPy/test/integration/test_ishare.py::TestIShare::test1201
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test1201 returned (<omero.clients.BaseClient object at 0x7f91739404f0>, 8987, 1729922958407), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user returned (object #0 (::omero::model::Image)
06:34:44 {
06:34:44 _id = object #1 (::omero::RLong)
06:34:44 {
06:34:44 _val = 6287
06:34:44 }
06:34:44 _details = <nil>
06:34:44 _loaded = False
06:34:44 _version = <nil>
06:34:44 _series = <nil>
06:34:44 _acquisitionDate = <nil>
06:34:44 _archived = <nil>
06:34:44 _partial = <nil>
06:34:44 _format = <nil>
06:34:44 _imagingEnvironment = <nil>
06:34:44 _objectiveSettings = <nil>
06:34:44 _instrument = <nil>
06:34:44 _stageLabel = <nil>
06:34:44 _experiment = <nil>
06:34:44 _pixelsSeq = {}
06:34:44 _pixelsLoaded = False
06:34:44 _wellSamplesSeq = {}
06:34:44 _wellSamplesLoaded = False
06:34:44 _roisSeq = {}
06:34:44 _roisLoaded = False
06:34:44 _datasetLinksSeq = {}
06:34:44 _datasetLinksLoaded = False
06:34:44 _datasetLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _folderLinksSeq = {}
06:34:44 _folderLinksLoaded = False
06:34:44 _folderLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _fileset = <nil>
06:34:44 _annotationLinksSeq = {}
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _name = <nil>
06:34:44 _description = <nil>
06:34:44 }, 9022), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir returned 'be1f36ef-1b01-4fcc-b666-2bf6d44ff130_4195/b471523d-9b9f-4351-bc3d-e71eb0ac782d', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestRepository::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRepository::test_dir returned '5110f0dd-a178-4977-94d4-79fc5aa57803_4196/a618b4af-23c4-489f-a8d9-75a96e960647', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir returned '9c71d001-309d-44d9-93f3-d3af7bd09271_4197/6c2c910b-1851-4f56-9ebf-7287ae378a6d', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir returned '7d52e04c-195a-440b-945b-299827084ffe_4198/e8b56986-4123-48ce-b141-24d5ed5dc2fc', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir returned 'b037b3c3-c40d-447c-bef3-78c69c026714_4210/d1805ed2-3e55-4e26-859a-529f5bee9e05', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir returned '57241f6f-6b71-4d6c-9729-6b7bb4a83fba_4215/b9a6e97f-e48c-4179-bff7-b5785e4fea6c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir returned 'a847e4f4-23da-4872-b2a9-65195e994fb5_4216/271903c1-c518-4ed5-ac3f-82ac2455618c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir returned '183b4850-b9ca-4063-871c-809a8869e393_4217/3bd5c9f9-ff37-4fce-aa57-2d71465cda5c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir returned '7c511ca8-2551-4126-9f62-21edf9d72dbf_4218/5be76fa6-3bd0-43af-8e85-fa4d1196ddbf', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir returned 'd1a1c310-a594-401e-8063-ed5505637339_4219/6eb7e1a5-bc06-42b7-a541-d0ecb350bc15', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir returned '3b76e173-277d-4b56-b692-6cb3ef7ce11e_4220/7ea36f63-e433-4553-85dc-11817e97f950', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir returned 'f3a7cd89-50a3-44b7-89ca-732494140eaf_4221/8e289314-6ec8-4549-bb5c-9536c57deaef', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir returned 'b531208f-05d9-4917-b3c2-be6edc374803_4223/c8978967-17a4-42c9-94e2-383086437884', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage returned 1bbc663e-8735-4ca3-a53c-ced8a51cc133/1ff0876c-4e11-446c-8c0b-7c6dcea3f94comero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562 returned (c4191aab-e52d-45a5-afad-c3c23f09dc85/ddf40bf5-4704-4584-96c4-a780ab0161cdomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000, object #0 (::omero::model::OriginalFile)
06:34:44 {
06:34:44 _id = object #1 (::omero::RLong)
06:34:44 {
06:34:44 _val = 5702
06:34:44 }
06:34:44 _details = object #2 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = object #3 (::omero::model::Experimenter)
06:34:44 {
06:34:44 _id = object #4 (::omero::RLong)
06:34:44 {
06:34:44 _val = 0
06:34:44 }
06:34:44 _details = <nil>
06:34:44 _loaded = False
06:34:44 _version = <nil>
06:34:44 _groupExperimenterMapSeq =
06:34:44 {
06:34:44 }
06:34:44 _groupExperimenterMapLoaded = False
06:34:44 _omeName = <nil>
06:34:44 _firstName = <nil>
06:34:44 _middleName = <nil>
06:34:44 _lastName = <nil>
06:34:44 _institution = <nil>
06:34:44 _ldap = <nil>
06:34:44 _email = <nil>
06:34:44 _config =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 }
06:34:44 _group = object #5 (::omero::model::ExperimenterGroup)
06:34:44 {
06:34:44 _id = object #6 (::omero::RLong)
06:34:44 {
06:34:44 _val = 1
06:34:44 }
06:34:44 _details = object #7 (::omero::model::Details)
06:34:44 {
06:34:44 _owner = <nil>
06:34:44 _group = <nil>
06:34:44 _creationEvent = <nil>
06:34:44 _updateEvent = <nil>
06:34:44 _permissions = object #8 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = False
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -52
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 1ff0876c-4e11-446c-8c0b-7c6dcea3f94c
06:34:44 key = omero.session.uuid
06:34:44 value = 1bbc663e-8735-4ca3-a53c-ced8a51cc133
06:34:44 }
06:34:44 _event = object #9 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 9290
06:34:44 sessionUuid = *********
06:34:44 userId = 4230
06:34:44 userName = 0ae9fc32-4ca6-46da-8d20-c5614f69cbad
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 3148
06:34:44 groupName = e7ec8914-9749-4e6c-9802-55c822dc6e1b
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = -1
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 3148
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #10 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = object #11 (::omero::RInt)
06:34:44 {
06:34:44 _val = 0
06:34:44 }
06:34:44 _name = object #12 (::omero::RString)
06:34:44 {
06:34:44 _val = user
06:34:44 }
06:34:44 _ldap = object #13 (::omero::RBool)
06:34:44 {
06:34:44 _val = False
06:34:44 }
06:34:44 _groupExperimenterMapSeq =
06:34:44 {
06:34:44 }
06:34:44 _groupExperimenterMapLoaded = False
06:34:44 _config =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _description = <nil>
06:34:44 }
06:34:44 _creationEvent = object #14 (::omero::model::Event)
06:34:44 {
06:34:44 _id = object #15 (::omero::RLong)
06:34:44 {
06:34:44 _val = 99477
06:34:44 }
06:34:44 _details = <nil>
06:34:44 _loaded = False
06:34:44 _status = <nil>
06:34:44 _time = <nil>
06:34:44 _experimenter = <nil>
06:34:44 _experimenterGroup = <nil>
06:34:44 _type = <nil>
06:34:44 _containingEvent = <nil>
06:34:44 _logsSeq =
06:34:44 {
06:34:44 }
06:34:44 _logsLoaded = False
06:34:44 _session = <nil>
06:34:44 }
06:34:44 _updateEvent = <object #14>
06:34:44 _permissions = object #16 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 [0] = False
06:34:44 [1] = True
06:34:44 [2] = True
06:34:44 [3] = False
06:34:44 [4] = True
06:34:44 [5] = True
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 _externalInfo = <nil>
06:34:44 _call =
06:34:44 {
06:34:44 key = omero.client.uuid
06:34:44 value = 1ff0876c-4e11-446c-8c0b-7c6dcea3f94c
06:34:44 key = omero.session.uuid
06:34:44 value = 1bbc663e-8735-4ca3-a53c-ced8a51cc133
06:34:44 }
06:34:44 _event = object #17 (::omero::sys::EventContext)
06:34:44 {
06:34:44 shareId = -1
06:34:44 sessionId = 9290
06:34:44 sessionUuid = *********
06:34:44 userId = 4230
06:34:44 userName = 0ae9fc32-4ca6-46da-8d20-c5614f69cbad
06:34:44 sudoerId = <nil>
06:34:44 sudoerName = <nil>
06:34:44 groupId = 3148
06:34:44 groupName = e7ec8914-9749-4e6c-9802-55c822dc6e1b
06:34:44 isAdmin = False
06:34:44 adminPrivileges =
06:34:44 {
06:34:44 }
06:34:44 eventId = -1
06:34:44 eventType = User
06:34:44 memberOfGroups =
06:34:44 {
06:34:44 [0] = 3148
06:34:44 [1] = 1
06:34:44 }
06:34:44 leaderOfGroups =
06:34:44 {
06:34:44 }
06:34:44 groupPermissions = object #18 (::omero::model::Permissions)
06:34:44 {
06:34:44 _restrictions =
06:34:44 {
06:34:44 }
06:34:44 _extendedRestrictions =
06:34:44 {
06:34:44 }
06:34:44 _perm1 = -120
06:34:44 }
06:34:44 }
06:34:44 }
06:34:44 _loaded = True
06:34:44 _version = <object #11>
06:34:44 _pixelsFileMapsSeq =
06:34:44 {
06:34:44 }
06:34:44 _pixelsFileMapsLoaded = False
06:34:44 _pixelsFileMapsCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _path = object #19 (::omero::RString)
06:34:44 {
06:34:44 _val = /
06:34:44 }
06:34:44 _repo = object #20 (::omero::RString)
06:34:44 {
06:34:44 _val = ScriptRepo
06:34:44 }
06:34:44 _size = object #21 (::omero::RLong)
06:34:44 {
06:34:44 _val = 168
06:34:44 }
06:34:44 _atime = <nil>
06:34:44 _mtime = <nil>
06:34:44 _ctime = <nil>
06:34:44 _hasher = object #22 (::omero::model::ChecksumAlgorithm)
06:34:44 {
06:34:44 _id = object #23 (::omero::RLong)
06:34:44 {
06:34:44 _val = 6
06:34:44 }
06:34:44 _details = <nil>
06:34:44 _loaded = False
06:34:44 _value = <nil>
06:34:44 }
06:34:44 _hash = object #24 (::omero::RString)
06:34:44 {
06:34:44 _val = 3cd655335eb836d7216d4678ed0aa3b204ccb82b
06:34:44 }
06:34:44 _mimetype = object #25 (::omero::RString)
06:34:44 {
06:34:44 _val = text/x-python
06:34:44 }
06:34:44 _filesetEntriesSeq =
06:34:44 {
06:34:44 }
06:34:44 _filesetEntriesLoaded = True
06:34:44 _annotationLinksSeq =
06:34:44 {
06:34:44 }
06:34:44 _annotationLinksLoaded = False
06:34:44 _annotationLinksCountPerOwner =
06:34:44 {
06:34:44 }
06:34:44 _name = object #26 (::omero::RString)
06:34:44 {
06:34:44 _val = e511bd0b-880c-42e0-8d19-86408fdb973b.py
06:34:44 }
06:34:44 }), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:34:44 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/decorators.py:82: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
06:34:44 log.warn(
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1313: DeprecationWarning: This method is deprecated as of OMERO 5.3.0
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1074: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use upload_plane instead
06:34:44 warnings.warn(
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
06:34:44 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
06:34:44 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1259: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use reset_rendering_settings
06:34:44 warnings.warn(
06:34:44 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:34:44 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration/junit-results.xml -
06:34:44 =========================== short test summary info ============================
06:34:44 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:34:44 FAILED test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:34:44 + where 2 = NonZeroReturnCode('assert failed').rv
06:34:44 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=4>.value
06:34:44 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 - omero.cli.NonZeroReturnCode: assert failed
06:34:44 FAILED test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 - AssertionError: assert 2 == 1
06:34:44 + where 2 = NonZeroReturnCode('assert failed').rv
06:34:44 + where NonZeroReturnCode('assert failed') = <ExceptionInfo NonZeroReturnCode('assert failed') tblen=3>.value
06:34:44 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 recv() returned zero
06:34:44 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 recv() returned zero
06:34:44 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 recv() returned zero
06:34:44 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 recv() returned zero
06:34:44 FAILED test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] - Ice.ConnectionLostException: Ice.ConnectionLostException:
06:34:44 recv() returned zero
06:34:44 FAILED test/integration/gatewaytest/test_user.py::TestUser::testSaveAs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 FAILED test/integration/test_util.py::TestUpgradeCheck::testReal - assert False is True
06:34:44 + where False = isUpgradeNeeded()
06:34:44 + where isUpgradeNeeded = <omero.util.upgrade_check.UpgradeCheck object at 0x7f91fd59e580>.isUpgradeNeeded
06:34:44 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnail - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testLinePlots - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProjections - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProperties - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testShortname - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testImageDate - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExport - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper - urllib.error.URLError: <urlopen error [Errno 110] Connection timed out>
06:34:44 = 11 failed, 1943 passed, 9 skipped, 36 deselected, 1924 warnings, 62 errors in 15480.79s (4:18:00) =
06:34:47 !! 10/26/24 07:34:46.474 error: 257 communicators not destroyed during global destruction.
06:34:47 Result: 1
06:34:47
06:34:47 BUILD SUCCESSFUL
06:34:47 Total time: 258 minutes 18 seconds
06:34:47 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroFS/build.xml integration -Dtestreports.dir=target/reports/integration
06:34:47 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:34:47 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/build.xml
06:34:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
06:34:48
06:34:48 python-integration:
06:34:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration
06:34:52 ============================= test session starts ==============================
06:34:52 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:34:52 cachedir: .pytest_cache
06:34:52 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:34:52 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:34:52 configfile: pytest.ini
06:34:52 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:34:52 collecting ... collected 1 item
06:34:52 test/integration/test_dbclient.py::TestDropBoxClient::test1 PASSED [100%]
06:34:52 =============================== warnings summary ===============================
06:34:52 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
06:34:52 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
06:34:52 import sys, string, imp, os, threading, warnings, datetime
06:34:52 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
06:34:52 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
06:34:52 warnings.warn(
06:34:52 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
06:34:52 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
06:34:52 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
06:34:52 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
06:34:52 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
06:34:52 from pkg_resources import DistributionNotFound, get_distribution
06:34:52 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
06:34:52 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration/junit-results.xml -
06:34:52 ======================== 1 passed, 4 warnings in 0.37s =========================
06:34:53
06:34:53 BUILD SUCCESSFUL
06:34:53 Total time: 5 seconds
06:34:53 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroWeb/build.xml integration -Dtestreports.dir=target/reports/integration
06:34:53 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:34:53 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/build.xml
06:34:53 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:34:54 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
06:34:54
06:34:54 python-integration:
06:34:54 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration
06:34:54 ============================= test session starts ==============================
06:34:54 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
06:34:54 cachedir: .pytest_cache
06:34:54 django: version: 4.2.16, settings: omeroweb.settings (from ini)
06:34:54 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
06:34:54 configfile: pytest.ini
06:34:54 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
06:34:58 collecting ... collected 430 items
06:35:23 test/integration/test_annotate.py::TestMapAnnotations::test_annotate_map PASSED [ 0%]
06:35:48 test/integration/test_annotate.py::TestTagging::test_create_tag PASSED [ 0%]
06:36:00 test/integration/test_annotate.py::TestTagging::test_annotate_tag PASSED [ 0%]
06:36:25 test/integration/test_annotate.py::TestBatchAnnotate::test_batch_annotate_tag PASSED [ 0%]
06:36:49 test/integration/test_annotate.py::TestFileAnnotations::test_add_fileannotations_form PASSED [ 1%]
06:36:58 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[1] PASSED [ 1%]
06:37:07 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[2] PASSED [ 1%]
06:37:31 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Plate] PASSED [ 1%]
06:37:39 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Image] PASSED [ 2%]
06:37:48 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Well] PASSED [ 2%]
06:37:57 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Channel] PASSED [ 2%]
06:38:05 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-foo] PASSED [ 2%]
06:38:14 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Plate] PASSED [ 3%]
06:38:22 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Image] PASSED [ 3%]
06:38:31 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Well] PASSED [ 3%]
06:38:40 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Channel] PASSED [ 3%]
06:38:49 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-foo] PASSED [ 3%]
06:38:57 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Plate] PASSED [ 4%]
06:39:06 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Image] PASSED [ 4%]
06:39:15 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Well] PASSED [ 4%]
06:39:16 test/integration/test_api_containers.py::TestContainers::test_container_crud[Project] PASSED [ 4%]
06:39:16 test/integration/test_api_containers.py::TestContainers::test_container_crud[Dataset] PASSED [ 5%]
06:39:17 test/integration/test_api_containers.py::TestContainers::test_container_crud[Screen] PASSED [ 5%]
06:39:28 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-True] PASSED [ 5%]
06:39:39 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-False] PASSED [ 5%]
06:39:50 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-True] PASSED [ 6%]
06:40:01 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-False] PASSED [ 6%]
06:40:10 test/integration/test_api_containers.py::TestContainers::test_screens PASSED [ 6%]
06:40:19 test/integration/test_api_containers.py::TestContainers::test_screen_plates_update PASSED [ 6%]
06:40:27 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype0] PASSED [ 6%]
06:40:36 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype1] PASSED [ 7%]
06:40:45 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype2] PASSED [ 7%]
06:40:54 test/integration/test_api_containers.py::TestContainers::test_spw_urls PASSED [ 7%]
06:41:03 test/integration/test_api_containers.py::TestContainers::test_spw_parent_urls PASSED [ 7%]
06:41:14 test/integration/test_api_containers.py::TestContainers::test_pdi_urls PASSED [ 8%]
06:41:25 test/integration/test_api_containers.py::TestContainers::test_pdi_parent_urls PASSED [ 8%]
06:41:40 test/integration/test_api_errors.py::TestErrors::test_save_post_no_id PASSED [ 8%]
06:41:40 test/integration/test_api_errors.py::TestErrors::test_save_put_id PASSED [ 8%]
06:41:40 test/integration/test_api_errors.py::TestErrors::test_marshal_type PASSED [ 9%]
06:41:40 test/integration/test_api_errors.py::TestErrors::test_invalid_parameter PASSED [ 9%]
06:41:40 test/integration/test_api_errors.py::TestErrors::test_marshal_validation PASSED [ 9%]
06:41:49 test/integration/test_api_errors.py::TestErrors::test_security_violation PASSED [ 9%]
06:41:58 test/integration/test_api_errors.py::TestErrors::test_validation_exception PASSED [ 10%]
06:42:00 test/integration/test_api_errors.py::TestErrors::test_project_validation PASSED [ 10%]
06:42:24 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-Experimenter] PASSED [ 10%]
06:42:33 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-ExperimenterGroup] PASSED [ 10%]
06:42:41 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-Experimenter] PASSED [ 10%]
06:42:50 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-ExperimenterGroup] PASSED [ 11%]
06:42:59 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[Experimenter] PASSED [ 11%]
06:43:07 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[ExperimenterGroup] PASSED [ 11%]
06:43:22 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_experimenters_groups PASSED [ 11%]
06:43:31 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_groups_experimenters PASSED [ 12%]
06:43:40 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_groups PASSED [ 12%]
06:43:49 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_experimenters PASSED [ 12%]
06:44:14 test/integration/test_api_images.py::TestImages::test_dataset_images PASSED [ 12%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_versions PASSED [ 13%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_base_url PASSED [ 13%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_base_url_versions_404 PASSED [ 13%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_get PASSED [ 13%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_csrf PASSED [ 13%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 14%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 14%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 14%]
06:44:29 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 14%]
06:44:38 test/integration/test_api_login.py::TestLogin::test_login_example PASSED [ 15%]
06:44:52 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_not_logged_in PASSED [ 15%]
06:45:01 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_no_results PASSED [ 15%]
06:45:10 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_user PASSED [ 15%]
06:45:21 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_user PASSED [ 16%]
06:45:30 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_group PASSED [ 16%]
06:45:39 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_groups PASSED [ 16%]
06:45:50 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_users PASSED [ 16%]
06:46:02 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_pagination PASSED [ 16%]
06:46:13 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_params PASSED [ 17%]
06:46:14 test/integration/test_api_projects.py::TestProjects::test_project_create_read PASSED [ 17%]
06:46:22 test/integration/test_api_projects.py::TestProjects::test_project_create_other_group PASSED [ 17%]
06:46:32 test/integration/test_api_projects.py::TestProjects::test_project_update PASSED [ 17%]
06:46:40 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Project] PASSED [ 18%]
06:46:49 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Dataset] PASSED [ 18%]
06:46:58 test/integration/test_api_projects.py::TestProjects::test_project_delete PASSED [ 18%]
06:47:22 test/integration/test_api_rois.py::TestContainers::test_image_rois PASSED [ 18%]
06:47:31 test/integration/test_api_rois.py::TestContainers::test_roi_delete PASSED [ 19%]
06:47:40 test/integration/test_api_rois.py::TestContainers::test_shapes PASSED [ 19%]
06:48:05 test/integration/test_api_wells.py::TestWells::test_plate_wells PASSED [ 19%]
06:48:16 test/integration/test_api_wells.py::TestWells::test_plate_index_wells PASSED [ 19%]
06:48:25 test/integration/test_api_wells.py::TestWells::test_well PASSED [ 20%]
06:48:46 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[user] PASSED [ 20%]
06:48:47 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[admin] PASSED [ 20%]
06:48:48 test/integration/test_chgrp.py::TestChgrp::test_chgrp_dry_run[user] PASSED [ 20%]
06:48:49 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[user] PASSED [ 20%]
06:48:50 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[admin] PASSED [ 21%]
06:48:50 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[user] PASSED [ 21%]
06:48:51 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[admin] PASSED [ 21%]
06:49:17 test/integration/test_chown.py::TestChown::test_chown_dry_run[admin] PASSED [ 21%]
06:49:17 test/integration/test_config.py::test_flattenProperties PASSED [ 22%]
06:49:22 test/integration/test_config.py::TestConfig::testDefaultConfig PASSED [ 22%]
06:49:25 test/integration/test_config.py::TestConfig::testDefaultConfigConversion PASSED [ 22%]
06:49:27 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-colleagues.label] PASSED [ 22%]
06:49:30 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-leaders.label] PASSED [ 23%]
06:49:33 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-everyone.label] PASSED [ 23%]
06:49:48 test/integration/test_containers.py::TestContainers::test_add_and_rename_container PASSED [ 23%]
06:49:51 test/integration/test_containers.py::TestContainers::test_add_owned_container PASSED [ 23%]
06:49:51 test/integration/test_containers.py::TestContainers::test_paste_move_remove_deletamany_image PASSED [ 23%]
06:49:55 test/integration/test_containers.py::TestContainers::test_edit_share PASSED [ 24%]
06:50:09 test/integration/test_csrf.py::TestCsrf::test_csrf_middleware_enabled PASSED [ 24%]
06:50:09 test/integration/test_csrf.py::TestCsrf::test_forgot_password PASSED [ 24%]
06:50:10 test/integration/test_csrf.py::TestCsrf::test_move_data PASSED [ 24%]
06:50:10 test/integration/test_csrf.py::TestCsrf::test_add_and_remove_comment PASSED [ 25%]
06:50:10 test/integration/test_csrf.py::TestCsrf::test_attach_file PASSED [ 25%]
06:50:10 test/integration/test_csrf.py::TestCsrf::test_edit_channel_names PASSED [ 25%]
06:50:10 test/integration/test_csrf.py::TestCsrf::test_copy_past_rendering_settings PASSED [ 25%]
06:50:11 test/integration/test_csrf.py::TestCsrf::test_reset_rendering_settings PASSED [ 26%]
06:50:11 test/integration/test_csrf.py::TestCsrf::test_apply_owners_rendering_settings PASSED [ 26%]
06:50:12 test/integration/test_csrf.py::TestCsrf::test_ome_tiff_script PASSED [ 26%]
06:50:13 test/integration/test_csrf.py::TestCsrf::test_script PASSED [ 26%]
06:50:13 test/integration/test_csrf.py::TestCsrf::test_myaccount PASSED [ 26%]
06:50:15 test/integration/test_csrf.py::TestCsrf::test_avatar PASSED [ 27%]
06:50:23 test/integration/test_csrf.py::TestCsrf::test_create_group PASSED [ 27%]
06:50:27 test/integration/test_csrf.py::TestCsrf::test_create_user PASSED [ 27%]
06:50:34 test/integration/test_csrf.py::TestCsrf::test_edit_group PASSED [ 27%]
06:50:41 test/integration/test_csrf.py::TestCsrf::test_edit_user PASSED [ 28%]
06:50:49 test/integration/test_csrf.py::TestCsrf::test_edit_group_by_owner PASSED [ 28%]
06:50:52 test/integration/test_csrf.py::TestCsrf::test_change_password PASSED [ 28%]
06:50:55 test/integration/test_csrf.py::TestCsrf::test_su PASSED [ 28%]
06:51:10 test/integration/test_decorators.py::TestShow::test_conn_cleanup PASSED [ 29%]
06:51:25 test/integration/test_download.py::TestDownload::test_spw_download PASSED [ 29%]
06:51:28 test/integration/test_download.py::TestDownload::test_orphaned_image_direct_download PASSED [ 29%]
06:51:31 test/integration/test_download.py::TestDownload::test_orphaned_image_download PASSED [ 29%]
06:51:35 test/integration/test_download.py::TestDownload::test_image_in_dataset_download PASSED [ 30%]
06:51:38 test/integration/test_download.py::TestDownload::test_image_in_dataset_in_project_download PASSED [ 30%]
06:51:38 test/integration/test_download.py::TestDownload::test_well_download PASSED [ 30%]
06:51:41 test/integration/test_download.py::TestDownload::test_attachment_download PASSED [ 30%]
06:51:57 test/integration/test_download.py::TestDownloadAs::test_download_image_as[jpeg] PASSED [ 30%]
06:51:57 test/integration/test_download.py::TestDownloadAs::test_download_image_as[png] PASSED [ 31%]
06:51:57 test/integration/test_download.py::TestDownloadAs::test_download_image_as[tif] PASSED [ 31%]
06:51:58 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[jpeg] PASSED [ 31%]
06:51:58 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[png] PASSED [ 31%]
06:51:59 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[tif] PASSED [ 32%]
06:52:35 test/integration/test_groups_users.py::TestGroupsUsers::test_group_users_menu PASSED [ 32%]
06:52:50 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[None] PASSED [ 32%]
06:52:50 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[10] PASSED [ 32%]
06:53:09 test/integration/test_history.py::TestHistory::test_history PASSED [ 33%]
06:53:09 test/integration/test_history.py::TestHistory::test_calendar_default PASSED [ 33%]
06:53:09 test/integration/test_history.py::TestHistory::test_calendar_month PASSED [ 33%]
06:53:24 test/integration/test_links.py::TestLinks::test_link_project_datasets PASSED [ 33%]
06:53:24 test/integration/test_links.py::TestLinks::test_link_datasets_images PASSED [ 33%]
06:53:24 test/integration/test_links.py::TestLinks::test_link_unlink_tagset_tags PASSED [ 34%]
06:53:25 test/integration/test_links.py::TestLinks::test_unlink_screen_plate PASSED [ 34%]
06:53:40 test/integration/test_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 34%]
06:53:40 test/integration/test_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 34%]
06:53:40 test/integration/test_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 35%]
06:53:40 test/integration/test_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 35%]
06:53:40 test/integration/test_login.py::TestLogin::test_get_login_page PASSED [ 35%]
06:53:46 test/integration/test_login.py::TestLogin::test_login_redirect[] PASSED [ 35%]
06:53:52 test/integration/test_login.py::TestLogin::test_login_redirect[/webclient/usertags/] PASSED [ 36%]
06:53:58 test/integration/test_login.py::TestLogin::test_login_view PASSED [ 36%]
06:54:17 test/integration/test_marshal.py::TestImgDetail::test_image_detail PASSED [ 36%]
06:54:32 test/integration/test_metadata.py::TestCoreMetadata::test_pixel_size_units PASSED [ 36%]
06:54:33 test/integration/test_metadata.py::TestCoreMetadata::test_none_pixel_size PASSED [ 36%]
06:54:48 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True] PASSED [ 37%]
06:54:48 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False] PASSED [ 37%]
06:54:48 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file PASSED [ 37%]
06:55:11 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[shrink] PASSED [ 37%]
06:55:20 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[trim] PASSED [ 38%]
06:55:29 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[expand] PASSED [ 38%]
06:55:38 test/integration/test_plategrid.py::TestPlateGrid::test_well_images PASSED [ 38%]
06:55:41 test/integration/test_plategrid.py::TestPlateGrid::test_instantiation PASSED [ 38%]
06:55:44 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_grid_size PASSED [ 39%]
06:55:46 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_thumbnail_url PASSED [ 39%]
06:55:49 test/integration/test_plategrid.py::TestPlateGrid::test_full_grid PASSED [ 39%]
06:55:52 test/integration/test_plategrid.py::TestPlateGrid::test_acquisition_date PASSED [ 39%]
06:55:55 test/integration/test_plategrid.py::TestPlateGrid::test_creation_date PASSED [ 40%]
06:55:57 test/integration/test_plategrid.py::TestPlateGrid::test_description PASSED [ 40%]
06:56:07 test/integration/test_plategrid.py::TestScreenPlateTables::test_get_plate_table PASSED [ 40%]
06:56:23 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_image PASSED [ 40%]
06:56:24 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url PASSED [ 40%]
06:56:25 test/integration/test_rendering.py::TestRendering::test_all_rendering_defs PASSED [ 41%]
06:56:43 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request PASSED [ 41%]
06:56:46 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_tile_argument PASSED [ 41%]
06:56:49 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_region_argument PASSED [ 41%]
06:56:56 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params PASSED [ 42%]
06:56:59 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_large_image PASSED [ 42%]
06:57:03 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_negative_resolution PASSED [ 42%]
06:57:06 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_invalid_resolution PASSED [ 42%]
06:57:16 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_big_image PASSED [ 43%]
06:57:23 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params PASSED [ 43%]
06:57:35 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params_big_image PASSED [ 43%]
06:57:44 test/integration/test_rendering.py::TestRenderImageRegion::test_render_birds_eye_view_big_image PASSED [ 43%]
06:57:57 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_big_image_resolution PASSED [ 43%]
06:58:15 test/integration/test_scripts.py::TestScripts::test_script_ui_defaults PASSED [ 44%]
06:58:19 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs0] PASSED [ 44%]
06:58:24 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs1] PASSED [ 44%]
06:58:28 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs2] PASSED [ 44%]
06:58:44 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[SplitView] PASSED [ 45%]
06:58:44 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[Thumbnail] PASSED [ 45%]
06:58:45 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[MakeMovie] PASSED [ 45%]
06:59:00 test/integration/test_show.py::TestShow::test_empty_path PASSED [ 45%]
06:59:00 test/integration/test_show.py::TestShow::test_project_legacy_path PASSED [ 46%]
06:59:00 test/integration/test_show.py::TestShow::test_projects_legacy_show PASSED [ 46%]
06:59:00 test/integration/test_show.py::TestShow::test_project_dataset_legacy_path PASSED [ 46%]
06:59:00 test/integration/test_show.py::TestShow::test_project_dataset_image_legacy_path PASSED [ 46%]
06:59:00 test/integration/test_show.py::TestShow::test_tag_redirect[1] PASSED [ 46%]
06:59:00 test/integration/test_show.py::TestShow::test_tag_redirect[2] PASSED [ 47%]
06:59:00 test/integration/test_show.py::TestShow::test_tagset_redirect[1] PASSED [ 47%]
06:59:00 test/integration/test_show.py::TestShow::test_tagset_redirect[2] PASSED [ 47%]
06:59:00 test/integration/test_show.py::TestShow::test_tag_legacy_path[1] PASSED [ 47%]
06:59:00 test/integration/test_show.py::TestShow::test_tag_legacy_path[2] PASSED [ 48%]
06:59:00 test/integration/test_show.py::TestShow::test_tagset_tag_legacy_path PASSED [ 48%]
06:59:00 test/integration/test_show.py::TestShow::test_image_legacy_path PASSED [ 48%]
06:59:00 test/integration/test_show.py::TestShow::test_screen_legacy_path PASSED [ 48%]
06:59:00 test/integration/test_show.py::TestShow::test_screen_plate_legacy_path PASSED [ 49%]
06:59:00 test/integration/test_show.py::TestShow::test_screen_plate_well_show PASSED [ 49%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[0] PASSED [ 49%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[1] PASSED [ 49%]
06:59:01 test/integration/test_show.py::TestShow::test_project_dataset_image_show PASSED [ 50%]
06:59:01 test/integration/test_show.py::TestShow::test_project_dataset_image_roi_show PASSED [ 50%]
06:59:01 test/integration/test_show.py::TestShow::test_project_by_id PASSED [ 50%]
06:59:01 test/integration/test_show.py::TestShow::test_project_by_name PASSED [ 50%]
06:59:01 test/integration/test_show.py::TestShow::test_tag_by_value[1] PASSED [ 50%]
06:59:01 test/integration/test_show.py::TestShow::test_tag_by_value[2] PASSED [ 51%]
06:59:01 test/integration/test_show.py::TestShow::test_tagset_tag_by_id PASSED [ 51%]
06:59:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 51%]
06:59:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 51%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:59:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 52%]
06:59:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 52%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 53%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 53%]
06:59:01 test/integration/test_show.py::TestShow::test_well_by_name[A10] PASSED [ 53%]
06:59:01 test/integration/test_show.py::TestShow::test_well_by_name[1J] PASSED [ 53%]
06:59:01 test/integration/test_show.py::TestShow::test_screen_plate_run_illegal_run PASSED [ 53%]
06:59:01 test/integration/test_show.py::TestShow::test_path_to_no_objects PASSED [ 54%]
06:59:01 test/integration/test_show.py::TestShow::test_project_dataset_image PASSED [ 54%]
06:59:01 test/integration/test_show.py::TestShow::test_project_dataset_images_pagination PASSED [ 54%]
06:59:01 test/integration/test_show.py::TestShow::test_orphaned_pagination PASSED [ 54%]
06:59:01 test/integration/test_show.py::TestShow::test_get_image_ids_dataset PASSED [ 55%]
06:59:01 test/integration/test_show.py::TestShow::test_image PASSED [ 55%]
06:59:01 test/integration/test_show.py::TestShow::test_roi PASSED [ 55%]
06:59:02 test/integration/test_show.py::TestShow::test_shape PASSED [ 55%]
06:59:02 test/integration/test_show.py::TestShow::test_well_image_shape PASSED [ 56%]
06:59:02 test/integration/test_show.py::TestShow::test_image_orphan PASSED [ 56%]
06:59:02 test/integration/test_show.py::TestShow::test_image_multi_link PASSED [ 56%]
06:59:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset PASSED [ 56%]
06:59:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset_project PASSED [ 56%]
06:59:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_project PASSED [ 57%]
06:59:02 test/integration/test_show.py::TestShow::test_dataset PASSED [ 57%]
06:59:02 test/integration/test_show.py::TestShow::test_dataset_multi_link PASSED [ 57%]
06:59:02 test/integration/test_show.py::TestShow::test_dataset_multi_link_restrict_project PASSED [ 57%]
06:59:02 test/integration/test_show.py::TestShow::test_dataset_orphan PASSED [ 58%]
06:59:02 test/integration/test_show.py::TestShow::test_project PASSED [ 58%]
06:59:02 test/integration/test_show.py::TestShow::test_acquisition PASSED [ 58%]
06:59:02 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate PASSED [ 58%]
06:59:02 test/integration/test_show.py::TestShow::test_acquisition_restrict_screen PASSED [ 59%]
06:59:02 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate_screen PASSED [ 59%]
06:59:02 test/integration/test_show.py::TestShow::test_well PASSED [ 59%]
06:59:02 test/integration/test_show.py::TestShow::test_well_multi PASSED [ 59%]
06:59:02 test/integration/test_show.py::TestShow::test_well_image PASSED [ 60%]
06:59:02 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_multi PASSED [ 60%]
06:59:02 test/integration/test_show.py::TestShow::test_well_restrict_plate_multi PASSED [ 60%]
06:59:03 test/integration/test_show.py::TestShow::test_well_restrict_screen_multi PASSED [ 60%]
06:59:03 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_multi PASSED [ 60%]
06:59:03 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_screen_multi PASSED [ 61%]
06:59:03 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_screen_multi PASSED [ 61%]
06:59:03 test/integration/test_show.py::TestShow::test_well_restrict_plate_screen_multi PASSED [ 61%]
06:59:03 test/integration/test_show.py::TestShow::test_plate PASSED [ 61%]
06:59:03 test/integration/test_show.py::TestShow::test_plate_restrict_screen PASSED [ 62%]
06:59:03 test/integration/test_show.py::TestShow::test_screen PASSED [ 62%]
06:59:06 test/integration/test_simple.py::TestSimple::testCurrentUser PASSED [ 62%]
06:59:09 test/integration/test_simple.py::TestSimple::testImport PASSED [ 62%]
06:59:33 test/integration/test_table.py::TestOmeroTables::test_table_html PASSED [ 63%]
06:59:42 test/integration/test_table.py::TestOmeroTables::test_table_pagination PASSED [ 63%]
06:59:51 test/integration/test_table.py::TestOmeroTables::test_table_query PASSED [ 63%]
07:00:01 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result0] PASSED [ 63%]
07:00:10 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result1] PASSED [ 63%]
07:00:19 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result2] PASSED [ 64%]
07:00:28 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result3] PASSED [ 64%]
07:00:37 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result4] PASSED [ 64%]
07:00:46 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result5] PASSED [ 64%]
07:00:56 test/integration/test_table.py::TestOmeroTables::test_table_metadata PASSED [ 65%]
07:01:04 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result0] PASSED [ 65%]
07:01:13 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result1] PASSED [ 65%]
07:01:22 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result0] PASSED [ 65%]
07:01:31 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result1] PASSED [ 66%]
07:01:40 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result2] PASSED [ 66%]
07:01:49 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity0] PASSED [ 66%]
07:01:58 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity1] PASSED [ 66%]
07:02:07 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity2] PASSED [ 66%]
07:02:16 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity3] PASSED [ 67%]
07:02:25 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity4] PASSED [ 67%]
07:02:34 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity5] PASSED [ 67%]
07:02:42 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity6] PASSED [ 67%]
07:02:51 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity7] PASSED [ 68%]
07:03:00 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity8] PASSED [ 68%]
07:03:09 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity9] PASSED [ 68%]
07:03:24 test/integration/test_tags.py::TestTags::test_create_tag_and_tagset PASSED [ 68%]
07:03:25 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tagset] PASSED [ 69%]
07:03:25 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tag] PASSED [ 69%]
07:03:25 test/integration/test_tags.py::TestTags::test_add_edit_and_remove_tag PASSED [ 69%]
07:03:41 test/integration/test_tags.py::TestTags::test_add_remove_tags PASSED [ 69%]
07:03:56 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[None] PASSED [ 70%]
07:03:56 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[100] PASSED [ 70%]
07:03:57 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[None] PASSED [ 70%]
07:03:57 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[100] PASSED [ 70%]
07:03:58 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb_set PASSED [ 70%]
07:04:13 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-1] PASSED [ 71%]
07:04:14 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-0] PASSED [ 71%]
07:04:15 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-1] PASSED [ 71%]
07:04:16 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-0] PASSED [ 71%]
07:04:26 test/integration/test_tree.py::TestTree::test_marshal_experimenter PASSED [ 72%]
07:04:29 test/integration/test_tree.py::TestTree::test_marshal_projects_no_results PASSED [ 72%]
07:04:32 test/integration/test_tree.py::TestTree::test_marshal_projects_user PASSED [ 72%]
07:04:37 test/integration/test_tree.py::TestTree::test_marshal_projects_another_user PASSED [ 72%]
07:04:40 test/integration/test_tree.py::TestTree::test_marshal_projects_another_group PASSED [ 73%]
07:04:42 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups PASSED [ 73%]
07:04:48 test/integration/test_tree.py::TestTree::test_marshal_projects_all_users PASSED [ 73%]
07:04:53 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups_all_users PASSED [ 73%]
07:04:56 test/integration/test_tree.py::TestTree::test_marshal_datasets_no_results PASSED [ 73%]
07:04:59 test/integration/test_tree.py::TestTree::test_marshal_datasets_user PASSED [ 74%]
07:05:04 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_user PASSED [ 74%]
07:05:07 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_group PASSED [ 74%]
07:05:09 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups PASSED [ 74%]
07:05:15 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_users PASSED [ 75%]
07:05:20 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups_all_users PASSED [ 75%]
07:05:22 test/integration/test_tree.py::TestTree::test_marshal_datasets_project PASSED [ 75%]
07:05:28 test/integration/test_tree.py::TestTree::test_marshal_datasets_project_crosslink PASSED [ 75%]
07:05:30 test/integration/test_tree.py::TestTree::test_marshal_images_no_results PASSED [ 76%]
07:05:33 test/integration/test_tree.py::TestTree::test_marshal_images_user PASSED [ 76%]
07:05:36 test/integration/test_tree.py::TestTree::test_marshal_images_user_pixels PASSED [ 76%]
07:05:39 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb0] PASSED [ 76%]
07:05:42 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb1] PASSED [ 76%]
07:05:47 test/integration/test_tree.py::TestTree::test_marshal_images_another_user PASSED [ 77%]
07:05:50 test/integration/test_tree.py::TestTree::test_marshal_images_another_group PASSED [ 77%]
07:05:53 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups PASSED [ 77%]
07:05:58 test/integration/test_tree.py::TestTree::test_marshal_images_all_users PASSED [ 77%]
07:06:03 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups_all_users PASSED [ 78%]
07:06:06 test/integration/test_tree.py::TestTree::test_marshal_images_dataset PASSED [ 78%]
07:06:08 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_no_pixels PASSED [ 78%]
07:06:11 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_date PASSED [ 78%]
07:06:16 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_crosslink PASSED [ 79%]
07:06:22 test/integration/test_tree.py::TestTree::test_marshal_images_share PASSED [ 79%]
07:06:25 test/integration/test_tree.py::TestTree::test_marshal_screens_no_results PASSED [ 79%]
07:06:27 test/integration/test_tree.py::TestTree::test_marshal_screens_user PASSED [ 79%]
07:06:32 test/integration/test_tree.py::TestTree::test_marshal_screens_another_user PASSED [ 80%]
07:06:35 test/integration/test_tree.py::TestTree::test_marshal_screens_another_group PASSED [ 80%]
07:06:38 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups PASSED [ 80%]
07:06:43 test/integration/test_tree.py::TestTree::test_marshal_screens_all_users PASSED [ 80%]
07:06:49 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups_all_users PASSED [ 80%]
07:06:51 test/integration/test_tree.py::TestTree::test_marshal_plates_no_results PASSED [ 81%]
07:06:54 test/integration/test_tree.py::TestTree::test_marshal_plates_user PASSED [ 81%]
07:06:59 test/integration/test_tree.py::TestTree::test_marshal_plates_another_user PASSED [ 81%]
07:07:02 test/integration/test_tree.py::TestTree::test_marshal_plates_another_group PASSED [ 81%]
07:07:04 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups PASSED [ 82%]
07:07:10 test/integration/test_tree.py::TestTree::test_marshal_plates_all_users PASSED [ 82%]
07:07:16 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups_all_users PASSED [ 82%]
07:07:18 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_no_results PASSED [ 82%]
07:07:21 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_user PASSED [ 83%]
07:07:26 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_user PASSED [ 83%]
07:07:29 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_group PASSED [ 83%]
07:07:32 test/integration/test_tree.py::TestTree::test_marshal_orphaned_no_results PASSED [ 83%]
07:07:35 test/integration/test_tree.py::TestTree::test_marshal_orphaned PASSED [ 83%]
07:07:40 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_user PASSED [ 84%]
07:07:43 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_group PASSED [ 84%]
07:07:45 test/integration/test_tree.py::TestTree::test_marshal_orphaned_all_groups PASSED [ 84%]
07:07:48 test/integration/test_tree.py::TestTree::test_marshal_tags_no_results PASSED [ 84%]
07:07:53 test/integration/test_tree.py::TestTree::test_marshal_tags_user PASSED [ 85%]
07:07:59 test/integration/test_tree.py::TestTree::test_marshal_tags_another_user PASSED [ 85%]
07:08:01 test/integration/test_tree.py::TestTree::test_marshal_tags_another_group PASSED [ 85%]
07:08:07 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups PASSED [ 85%]
07:08:12 test/integration/test_tree.py::TestTree::test_marshal_tags_all_users PASSED [ 86%]
07:08:17 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups_all_users PASSED [ 86%]
07:08:23 test/integration/test_tree.py::TestTree::test_marshal_tags_orphaned PASSED [ 86%]
07:08:28 test/integration/test_tree.py::TestTree::test_marshal_tags_tagset PASSED [ 86%]
07:08:31 test/integration/test_tree.py::TestTree::test_marshal_tagged_no_results PASSED [ 86%]
07:08:37 test/integration/test_tree.py::TestTree::test_marshal_tagged_user PASSED [ 87%]
07:08:42 test/integration/test_tree.py::TestTree::test_marshal_tagged_perms PASSED [ 87%]
07:08:45 test/integration/test_tree.py::TestTree::test_marshal_tagged_image_pixels PASSED [ 87%]
07:08:50 test/integration/test_tree.py::TestTree::test_marshal_shares_user PASSED [ 87%]
07:08:56 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user PASSED [ 88%]
07:09:01 test/integration/test_tree.py::TestTree::test_marshal_shares_user_owned PASSED [ 88%]
07:09:06 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user_owned PASSED [ 88%]
07:09:12 test/integration/test_tree.py::TestTree::test_marshal_discussions_user PASSED [ 88%]
07:09:17 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user PASSED [ 89%]
07:09:22 test/integration/test_tree.py::TestTree::test_marshal_discussions_user_owned PASSED [ 89%]
07:09:28 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user_owned PASSED [ 89%]
07:09:36 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag PASSED [ 89%]
07:09:41 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag_userB PASSED [ 90%]
07:09:47 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_userA_userB PASSED [ 90%]
07:09:52 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_projects PASSED [ 90%]
07:09:58 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_tags_comments_project PASSED [ 90%]
07:10:00 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_filter_by_namespace PASSED [ 90%]
07:10:28 test/integration/test_webadmin.py::TestUserSettings::test_user_settings_page PASSED [ 91%]
07:10:37 test/integration/test_webadmin.py::TestUserSettings::test_edit_settings PASSED [ 91%]
07:10:57 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[user] PASSED [ 91%]
07:11:01 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[restricted_administrator] PASSED [ 91%]
07:11:06 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[administrator] PASSED [ 92%]
07:11:11 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field0] PASSED [ 92%]
07:11:16 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field1] PASSED [ 92%]
07:11:22 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field2] PASSED [ 92%]
07:11:28 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field3] PASSED [ 93%]
07:11:33 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field4] PASSED [ 93%]
07:11:38 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field5] PASSED [ 93%]
07:11:44 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field6] PASSED [ 93%]
07:11:48 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege0] PASSED [ 93%]
07:11:52 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege1] PASSED [ 94%]
07:11:57 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege2] PASSED [ 94%]
07:12:01 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege3] PASSED [ 94%]
07:12:05 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege4] PASSED [ 94%]
07:12:10 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege5] PASSED [ 95%]
07:12:14 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege6] PASSED [ 95%]
07:12:18 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege7] PASSED [ 95%]
07:12:23 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege8] PASSED [ 95%]
07:12:27 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege9] PASSED [ 96%]
07:12:40 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges0] PASSED [ 96%]
07:12:54 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges1] PASSED [ 96%]
07:13:07 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges2] PASSED [ 96%]
07:13:21 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges3] PASSED [ 96%]
07:13:34 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges4] PASSED [ 97%]
07:13:53 test/integration/test_webadmin.py::TestExperimenters::test_restricted_admin_create_edit_user PASSED [ 97%]
07:14:26 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges0] PASSED [ 97%]
07:14:45 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges1] PASSED [ 97%]
07:15:04 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges2] PASSED [ 98%]
07:15:12 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions0] PASSED [ 98%]
07:15:20 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions1] PASSED [ 98%]
07:15:29 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions2] PASSED [ 98%]
07:15:37 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions3] PASSED [ 99%]
07:15:44 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field0] PASSED [ 99%]
07:15:51 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field1] PASSED [ 99%]
07:16:43 test/integration/test_webadmin.py::TestGroups::test_validation_errors PASSED [ 99%]
07:16:55 test/integration/test_webadmin.py::TestGroups::test_save_experimenter PASSED [100%]
07:16:55 =============================== warnings summary ===============================
07:16:55 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:16:55 import sys, string, imp, os, threading, warnings, datetime
07:16:55 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:16:55 warnings.warn(
07:16:55 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:16:55 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:16:55 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:16:55 from pkg_resources import DistributionNotFound, get_distribution
07:16:55 OmeroWeb/test/integration/test_annotate.py: 69 warnings
07:16:55 OmeroWeb/test/integration/test_api_containers.py: 177 warnings
07:16:55 OmeroWeb/test/integration/test_api_errors.py: 19 warnings
07:16:55 OmeroWeb/test/integration/test_api_experimenters_groups.py: 57 warnings
07:16:55 OmeroWeb/test/integration/test_api_images.py: 13 warnings
07:16:55 OmeroWeb/test/integration/test_api_login.py: 8 warnings
07:16:55 OmeroWeb/test/integration/test_api_projects.py: 87 warnings
07:16:55 OmeroWeb/test/integration/test_api_rois.py: 25 warnings
07:16:55 OmeroWeb/test/integration/test_api_wells.py: 20 warnings
07:16:55 OmeroWeb/test/integration/test_chgrp.py: 43 warnings
07:16:55 OmeroWeb/test/integration/test_chown.py: 16 warnings
07:16:55 OmeroWeb/test/integration/test_config.py: 5 warnings
07:16:55 OmeroWeb/test/integration/test_containers.py: 19 warnings
07:16:55 OmeroWeb/test/integration/test_csrf.py: 38 warnings
07:16:55 OmeroWeb/test/integration/test_decorators.py: 5 warnings
07:16:55 OmeroWeb/test/integration/test_download.py: 28 warnings
07:16:55 OmeroWeb/test/integration/test_groups_users.py: 10 warnings
07:16:55 OmeroWeb/test/integration/test_histogram.py: 7 warnings
07:16:55 OmeroWeb/test/integration/test_history.py: 12 warnings
07:16:55 OmeroWeb/test/integration/test_links.py: 20 warnings
07:16:55 OmeroWeb/test/integration/test_login.py: 13 warnings
07:16:55 OmeroWeb/test/integration/test_marshal.py: 6 warnings
07:16:55 OmeroWeb/test/integration/test_metadata.py: 16 warnings
07:16:55 OmeroWeb/test/integration/test_plategrid.py: 29 warnings
07:16:55 OmeroWeb/test/integration/test_rendering.py: 66 warnings
07:16:55 OmeroWeb/test/integration/test_scripts.py: 38 warnings
07:16:55 OmeroWeb/test/integration/test_show.py: 4 warnings
07:16:55 OmeroWeb/test/integration/test_table.py: 110 warnings
07:16:55 OmeroWeb/test/integration/test_tags.py: 26 warnings
07:16:55 OmeroWeb/test/integration/test_thumbnails.py: 68 warnings
07:16:55 OmeroWeb/test/integration/test_webadmin.py: 104 warnings
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/core/serializers/base.py:22: RemovedInDjango50Warning: PickleSerializer is deprecated due to its security risk. Use JSONSerializer instead.
07:16:55 warnings.warn(
07:16:55 OmeroWeb/test/integration/test_api_containers.py: 67 warnings
07:16:55 OmeroWeb/test/integration/test_api_images.py: 6 warnings
07:16:55 OmeroWeb/test/integration/test_api_wells.py: 24 warnings
07:16:55 OmeroWeb/test/integration/test_containers.py: 2 warnings
07:16:55 OmeroWeb/test/integration/test_csrf.py: 5 warnings
07:16:55 OmeroWeb/test/integration/test_download.py: 9 warnings
07:16:55 OmeroWeb/test/integration/test_histogram.py: 2 warnings
07:16:55 OmeroWeb/test/integration/test_metadata.py: 2 warnings
07:16:55 OmeroWeb/test/integration/test_rendering.py: 17 warnings
07:16:55 OmeroWeb/test/integration/test_scripts.py: 30 warnings
07:16:55 OmeroWeb/test/integration/test_thumbnails.py: 23 warnings
07:16:55 OmeroWeb/test/integration/test_tree.py: 20 warnings
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:16:55 converted_plane = byte_swapped_plane.tostring()
07:16:55 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_type
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:44: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:16:55 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:16:55 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_validation
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:97: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:16:55 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
07:16:55 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_security_violation
07:16:55 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_validation_exception
07:16:55 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_project_validation
07:16:55 OmeroWeb/test/integration/test_api_projects.py::TestProjects::test_project_delete
07:16:55 OmeroWeb/test/integration/test_api_rois.py::TestContainers::test_roi_delete
07:16:55 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:16:55 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:16:55 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:16:55 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True]
07:16:55 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False]
07:16:55 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omeroweb/testlib/__init__.py:478: DeprecationWarning: This method is deprecated as of OMERO 5.4.0. Use get
07:16:55 warnings.warn(
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:8856: DeprecationWarning: setActiveChannels() is deprecated in OMERO 5.4.0.Use set_active_channels
07:16:55 warnings.warn("setActiveChannels() is deprecated in OMERO 5.4.0."
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
07:16:55 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:9118: DeprecationWarning: Deprecated in 5.4.0. Use setChannelInverted()
07:16:55 warnings.warn("Deprecated in 5.4.0. Use setChannelInverted()",
07:16:55 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:16:55 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration/junit-results.xml -
07:16:55 =============== 430 passed, 1389 warnings in 2520.41s (0:42:00) ================
07:16:56 !! 10/26/24 08:16:56.132 error: 8 communicators not destroyed during global destruction.
07:16:56
07:16:56 BUILD SUCCESSFUL
07:16:56 Total time: 42 minutes 2 seconds
07:16:56 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -DMARK=broken -Dtestreports.dir=target/reports/broken
07:16:56 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:16:56 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
07:16:56 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:16:56 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
07:16:56
07:16:56 python-integration:
07:16:56 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken
07:16:57 ============================= test session starts ==============================
07:16:57 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
07:16:57 cachedir: .pytest_cache
07:16:57 django: version: 4.2.16, settings: omeroweb.settings (from ini)
07:16:57 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
07:16:57 configfile: pytest.ini
07:16:57 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
07:17:01 collecting ... collected 2061 items / 2025 deselected / 36 selected
07:17:04 test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly FAILED [ 2%]
07:17:19 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] FAILED [ 5%]
07:17:32 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] FAILED [ 8%]
07:17:33 test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory FAILED [ 11%]
07:17:51 test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript FAILED [ 13%]
07:17:56 test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations FAILED [ 16%]
07:17:57 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead FAILED [ 19%]
07:18:01 test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback FAILED [ 22%]
07:18:17 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts FAILED [ 25%]
07:18:19 test/integration/tablestest/test_service.py::TestTables::test2098 FAILED [ 27%]
07:18:19 test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile FAILED [ 30%]
07:18:19 test/integration/tablestest/test_service.py::TestTables::testReadEqual FAILED [ 33%]
07:18:20 test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange FAILED [ 36%]
07:18:25 test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset FAILED [ 38%]
07:18:28 test/integration/test_admin.py::TestAdmin::test9193 FAILED [ 41%]
07:18:30 test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 FAILED [ 44%]
07:18:36 test/integration/test_ishare.py::TestIShare::test1172 FAILED [ 47%]
07:18:39 test/integration/test_itimeline.py::TestITimeline::test1225 FAILED [ 50%]
07:18:42 test/integration/test_permissions.py::TestPermissions::test3136 FAILED [ 52%]
07:18:45 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit FAILED [ 55%]
07:18:47 test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink FAILED [ 58%]
07:18:50 test/integration/test_permissions.py::TestPermissions::testSaveBadLink FAILED [ 61%]
07:18:53 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser FAILED [ 63%]
07:18:56 test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic FAILED [ 66%]
07:18:56 test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession FAILED [ 69%]
07:18:56 test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save FAILED [ 72%]
07:19:01 test/integration/test_rawfilestore.py::TestRFS::testNoWrite FAILED [ 75%]
07:19:04 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile FAILED [ 77%]
07:19:17 test/integration/test_scripts.py::TestScripts::testParseErrorTicket2185 PASSED [ 80%]
07:19:32 test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 FAILED [ 83%]
07:19:36 test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 FAILED [ 86%]
07:19:51 test/integration/test_scripts.py::TestScripts::test3527 FAILED [ 88%]
07:19:56 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx FAILED [ 91%]
07:20:17 test/integration/test_tickets2000.py::TestTickets2000::test1184 FAILED [ 94%]
07:20:28 test/integration/test_tickets4000.py::TestTickets4000::test3138 PASSED [ 97%]
07:20:33 test/integration/test_tickets6000.py::TestTickets6000::test5684 PASSED [100%]
07:20:33 =================================== FAILURES ===================================
07:20:33 __________________________ TestFS.testRenameAdminOnly __________________________
07:20:33 self = <test.integration.clitest.test_fs.TestFS object at 0x7f98e099c910>
07:20:33 capsys = <_pytest.capture.CaptureFixture object at 0x7f98acdd3d30>
07:20:33 @pytest.mark.broken(reason="fs rename is temporarily disabled")
07:20:33 def testRenameAdminOnly(self, capsys):
07:20:33 """Test fs rename is admin-only"""
07:20:33 self.args += ["rename", "Fileset:1"]
07:20:33 with pytest.raises(NonZeroReturnCode):
07:20:33 self.cli.invoke(self.args, strict=True)
07:20:33 out, err = capsys.readouterr()
07:20:33 > assert err.endswith("SecurityViolation: Admins only!\n")
07:20:33 E AssertionError: assert False
07:20:33 E + where False = <built-in method endswith of str object at 0x7f98acdc6260>('SecurityViolation: Admins only!\n')
07:20:33 E + where <built-in method endswith of str object at 0x7f98acdc6260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:20:33 test/integration/clitest/test_fs.py:118: AssertionError
07:20:33 _________ TestImport.testTargetInDifferentGroup[Dataset-test.fake--d] __________
07:20:33 self = <test.integration.clitest.test_import.TestImport object at 0x7f98e076ff70>
07:20:33 container = 'Dataset', filename = 'test.fake', arg = '-d'
07:20:33 tmpdir = local('/tmp/pytest-of-omero/pytest-26/testTargetInDifferentGroup_Dat0')
07:20:33 capfd = <_pytest.capture.CaptureFixture object at 0x7f98ac74a880>
07:20:33 @pytest.mark.broken(reason="needs omero.group setting")
07:20:33 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:20:33 def testTargetInDifferentGroup(self, container, filename, arg,
07:20:33 tmpdir, capfd):
07:20:33 new_group = self.new_group(experimenters=[self.user])
07:20:33 self.sf.getAdminService().getEventContext() # Refresh
07:20:33 target = eval("omero.model."+container+"I")()
07:20:33 target.name = rstring('testTargetInDifferentGroup')
07:20:33 target = self.update.saveAndReturnObject(
07:20:33 target, {"omero.group": str(new_group.id.val)})
07:20:33 assert target.details.group.id.val == new_group.id.val
07:20:33 fakefile = tmpdir.join(filename)
07:20:33 fakefile.write('')
07:20:33 self.args += [str(fakefile)]
07:20:33 self.args += [arg, '%s' % target.id.val]
07:20:33 # Invoke CLI import command and retrieve stdout/stderr
07:20:33 > o, e = self.do_import(capfd)
07:20:33 test/integration/clitest/test_import.py:1216:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 test/integration/clitest/test_import.py:150: in do_import
07:20:33 self.cli.invoke(self.args, strict=True)
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:20:33 self.assertRC()
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <omero.cli.CLI object at 0x7f98a0264310>
07:20:33 def assertRC(self):
07:20:33 if self.rv != 0:
07:20:33 > raise NonZeroReturnCode(self.rv, "assert failed")
07:20:33 E omero.cli.NonZeroReturnCode: assert failed
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:20:33 ----------------------------- Captured stdout call -----------------------------
07:20:33 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:20:33 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:20:33 2024-10-26 08:17:07,871 237 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:20:33 2024-10-26 08:17:07,886 252 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.1.0-SNAPSHOT revision: 7337fc98a40cf95700a08dd61e07f95eadc807b7 date: 26 October 2024
07:20:33 2024-10-26 08:17:07,934 300 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:20:33 2024-10-26 08:17:08,237 603 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:20:33 2024-10-26 08:17:08,300 666 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 61ms. (63ms total) [0 unknowns]
07:20:33 2024-10-26 08:17:08,333 699 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:20:33 2024-10-26 08:17:08,672 1038 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:20:33 2024-10-26 08:17:08,851 1217 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:20:33 2024-10-26 08:17:08,856 1222 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:20:33 2024-10-26 08:17:08,856 1222 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:20:33 2024-10-26 08:17:08,857 1223 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:20:33 2024-10-26 08:17:08,857 1223 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:20:33 2024-10-26 08:17:08,857 1223 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:20:33 2024-10-26 08:17:08,857 1223 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:20:33 2024-10-26 08:17:18,935 11301 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:20:33 2024-10-26 08:17:19,429 11795 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Dataset:1346
07:20:33 2024-10-26 08:17:19,440 11806 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@7c335dd8
07:20:33 2024-10-26 08:17:19,441 11807 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:20:33 java.lang.RuntimeException: Failed to load target
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:20:33 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:20:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:20:33 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 Caused by: omero.SecurityViolation: null
07:20:33 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:20:33 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:20:33 at java.base/java.lang.Class.newInstance(Class.java:584)
07:20:33 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:20:33 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:20:33 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:20:33 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:20:33 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:20:33 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:20:33 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:20:33 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:20:33 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:20:33 ... 7 common frames omitted
07:20:33 2024-10-26 08:17:19,443 11809 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:20:33 ==> Summary
07:20:33 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.509
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.util.Resources:__init__.py:652 Starting
07:20:33 INFO omero.util.Resources:__init__.py:669 Halted
07:20:33 _ TestImport.testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] _
07:20:33 self = <test.integration.clitest.test_import.TestImport object at 0x7f98e0775130>
07:20:33 container = 'Screen'
07:20:33 filename = 'SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake'
07:20:33 arg = '-r'
07:20:33 tmpdir = local('/tmp/pytest-of-omero/pytest-26/testTargetInDifferentGroup_Scr0')
07:20:33 capfd = <_pytest.capture.CaptureFixture object at 0x7f98ac74a8b0>
07:20:33 @pytest.mark.broken(reason="needs omero.group setting")
07:20:33 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
07:20:33 def testTargetInDifferentGroup(self, container, filename, arg,
07:20:33 tmpdir, capfd):
07:20:33 new_group = self.new_group(experimenters=[self.user])
07:20:33 self.sf.getAdminService().getEventContext() # Refresh
07:20:33 target = eval("omero.model."+container+"I")()
07:20:33 target.name = rstring('testTargetInDifferentGroup')
07:20:33 target = self.update.saveAndReturnObject(
07:20:33 target, {"omero.group": str(new_group.id.val)})
07:20:33 assert target.details.group.id.val == new_group.id.val
07:20:33 fakefile = tmpdir.join(filename)
07:20:33 fakefile.write('')
07:20:33 self.args += [str(fakefile)]
07:20:33 self.args += [arg, '%s' % target.id.val]
07:20:33 # Invoke CLI import command and retrieve stdout/stderr
07:20:33 > o, e = self.do_import(capfd)
07:20:33 test/integration/clitest/test_import.py:1216:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 test/integration/clitest/test_import.py:150: in do_import
07:20:33 self.cli.invoke(self.args, strict=True)
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
07:20:33 self.assertRC()
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <omero.cli.CLI object at 0x7f98a0264310>
07:20:33 def assertRC(self):
07:20:33 if self.rv != 0:
07:20:33 > raise NonZeroReturnCode(self.rv, "assert failed")
07:20:33 E omero.cli.NonZeroReturnCode: assert failed
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
07:20:33 ----------------------------- Captured stdout call -----------------------------
07:20:33 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
07:20:33 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
07:20:33 2024-10-26 08:17:20,234 244 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
07:20:33 2024-10-26 08:17:20,250 260 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.1.0-SNAPSHOT revision: 7337fc98a40cf95700a08dd61e07f95eadc807b7 date: 26 October 2024
07:20:33 2024-10-26 08:17:20,299 309 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
07:20:33 2024-10-26 08:17:20,609 619 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
07:20:33 2024-10-26 08:17:21,059 1069 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 448ms. (450ms total) [0 unknowns]
07:20:33 2024-10-26 08:17:21,092 1102 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
07:20:33 2024-10-26 08:17:21,435 1445 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
07:20:33 2024-10-26 08:17:21,616 1626 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
07:20:33 2024-10-26 08:17:21,621 1631 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.40.1.el9_4.x86_64
07:20:33 2024-10-26 08:17:31,691 11701 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.7.5-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-427.40.1.el9_4.x86_64;java.runtime.version=11.0.24%2B8-LTS;java.vm.vendor=Red+Hat%2C+Inc. "connect timed out"
07:20:33 2024-10-26 08:17:31,900 11910 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Screen:232
07:20:33 2024-10-26 08:17:31,911 11921 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@423708f0
07:20:33 2024-10-26 08:17:31,911 11921 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
07:20:33 java.lang.RuntimeException: Failed to load target
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
07:20:33 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:20:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
07:20:33 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
07:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
07:20:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 Caused by: omero.SecurityViolation: null
07:20:33 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
07:20:33 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
07:20:33 at java.base/java.lang.Class.newInstance(Class.java:584)
07:20:33 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
07:20:33 at IceInternal.BasicStream.access$300(BasicStream.java:14)
07:20:33 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
07:20:33 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
07:20:33 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
07:20:33 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
07:20:33 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
07:20:33 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
07:20:33 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
07:20:33 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
07:20:33 ... 7 common frames omitted
07:20:33 2024-10-26 08:17:31,913 11923 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
07:20:33 ==> Summary
07:20:33 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.222
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.util.Resources:__init__.py:652 Starting
07:20:33 INFO omero.util.Resources:__init__.py:669 Halted
07:20:33 ________________________ TestHistory.testCreateHistory _________________________
07:20:33 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7f98e03266d0>
07:20:33 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98ac79dd30>
07:20:33 @pytest.mark.broken(ticket="11494")
07:20:33 def testCreateHistory(self, gatewaywrapper):
07:20:33 # Login as user...
07:20:33 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:20:33 userId = gatewaywrapper.gateway.getEventContext().userId
07:20:33 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:20:33 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:20:33 start = int(round(time.time() * 1000)) - 1000
07:20:33 # Create Dataset in 'default' group
07:20:33 update = gatewaywrapper.gateway.getUpdateService()
07:20:33 new_ds = omero.model.DatasetI()
07:20:33 dataset_name = "history_test_%s" % uuid
07:20:33 new_ds.name = rstring(dataset_name)
07:20:33 new_ds = update.saveAndReturnObject(new_ds)
07:20:33 new_ds_Id = new_ds.id.val
07:20:33 # As Admin, create a second group with this user & upload script
07:20:33 gatewaywrapper.loginAsAdmin()
07:20:33 gid = gatewaywrapper.gateway.createGroup(
07:20:33 "history-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:20:33 # login as User
07:20:33 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
07:20:33 end = int(round(time.time() * 1000)) + 1000
07:20:33 self.searchHistory(gatewaywrapper.gateway, start, end)
07:20:33 # switch user into new group
07:20:33 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:20:33 omero.model.ExperimenterGroupI(gid, False))
07:20:33 assert switched, "Failed to switch into new group"
07:20:33 # Shouldn't be able to access Dataset...
07:20:33 > self.searchHistory(gatewaywrapper.gateway, start, end)
07:20:33 test/integration/gatewaytest/test_multi_group.py:96:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7f98e03266d0>
07:20:33 gateway = <omero.gateway._BlitzGateway object at 0x7f98aa517250>
07:20:33 start = 1729927052381, end = 1729927054524, dtype = 'Dataset'
07:20:33 def searchHistory(self, gateway, start, end, dtype="Dataset"):
07:20:33 tm = gateway.getTimelineService()
07:20:33 count = tm.countByPeriod([dtype], rtime(int(start)),
07:20:33 rtime(int(end)), None, gateway.SERVICE_OPTS)
07:20:33 data = tm.getByPeriod([dtype], rtime(int(start)), rtime(int(end)),
07:20:33 None, True, gateway.SERVICE_OPTS)
07:20:33 logs = tm.getEventLogsByPeriod(rtime(start), rtime(end), None,
07:20:33 gateway.SERVICE_OPTS)
07:20:33 entityType = 'ome.model.containers.%s' % dtype
07:20:33 filteredLogs = [{'id': i.entityId.val, 'action': i.action.val}
07:20:33 for i in logs if i.entityType.val == entityType]
07:20:33 typeCount = count[dtype]
07:20:33 dataCount = len(data[dtype])
07:20:33 logCount = len(filteredLogs)
07:20:33 assert typeCount == dataCount, \
07:20:33 "Period count should match number of objects"
07:20:33 > assert logCount == dataCount, \
07:20:33 "Logs count should match number of objects"
07:20:33 E AssertionError: Logs count should match number of objects
07:20:33 E assert 1 == 0
07:20:33 test/integration/gatewaytest/test_multi_group.py:58: AssertionError
07:20:33 ------------------------------ Captured log setup ------------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=91c525a0-031e-43dd-809c-a8a68713a371)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=05623338-bb64-48fd-bab2-916bc8a95a52)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=68598ebd-bf61-413b-9e0e-53a1ed592ef7)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=6b99c3f5-60f9-427a-bc17-e8c8261b8c5c)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=6674e73d-cf07-435c-93a9-916aa8b8acf7)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=3585cf70-f057-421a-8131-fac4d7355f98)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=581b5611-eec6-47d2-b878-f50db1baffe2)
07:20:33 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <3bd7a60a-2cbb-4a6f-aa9b-b2414b9875c6omero.api.IAdmin> lookupExperimenter(('history_test_user',), {})
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:20:33 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:20:33 omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: history_test_user
07:20:33 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor650.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor650.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3384.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3383.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.lookupExperimenter_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:20:33 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No such experimenter: history_test_user
07:20:33 }
07:20:33 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <3bd7a60a-2cbb-4a6f-aa9b-b2414b9875c6omero.api.IAdmin> lookupGroup(('rw_history',), {})
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:20:33 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:20:33 omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_history
07:20:33 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor594.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor594.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor617.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor616.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.lookupGroup_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:20:33 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No such group: rw_history
07:20:33 }
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=f2e13750-2007-493b-853a-3a157aa7f5a0)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=c3c11bce-7034-4552-b3b6-7ede318c076f)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=bec6f870-402d-4d0f-9ede-0c491d96a08b)
07:20:33 --------------------------- Captured stderr teardown ---------------------------
07:20:33 **
07:20:33 ---------------------------- Captured log teardown -----------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=92a7f229-6815-4e41-912e-639f33001e90)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=c475d41e-0e6c-40e0-833c-6f23be3a64ac)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=024f67d8-06b2-4e93-93c6-1840172e2565)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ___________________________ TestScript.testRunScript ___________________________
07:20:33 self = <test.integration.gatewaytest.test_multi_group.TestScript object at 0x7f98e0334640>
07:20:33 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98ac607cd0>
07:20:33 @pytest.mark.broken(ticket="11610")
07:20:33 def testRunScript(self, gatewaywrapper):
07:20:33 # Login as user...
07:20:33 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:20:33 userId = gatewaywrapper.gateway.getEventContext().userId
07:20:33 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
07:20:33 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
07:20:33 # Create Dataset in 'default' group
07:20:33 update = gatewaywrapper.gateway.getUpdateService()
07:20:33 new_ds = omero.model.DatasetI()
07:20:33 dataset_name = "script_test_%s" % uuid
07:20:33 new_ds.name = rstring(dataset_name)
07:20:33 new_ds = update.saveAndReturnObject(new_ds)
07:20:33 new_ds_Id = new_ds.id.val
07:20:33 # As Admin, create a second group with this user & upload script
07:20:33 gatewaywrapper.loginAsAdmin()
07:20:33 gid = gatewaywrapper.gateway.createGroup(
07:20:33 "script-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
07:20:33 SCRIPT = """if True:
07:20:33 import omero.scripts
07:20:33 import omero.rtypes
07:20:33 client = omero.scripts.client("ticket8573", \
07:20:33 omero.scripts.Long("datasetId"), \
07:20:33 omero.scripts.String("datasetName", out=True))
07:20:33 ec = client.sf.getAdminService().getEventContext()
07:20:33 gid = ec.groupId
07:20:33 qs = client.sf.getQueryService()
07:20:33 ds_Id = client.getInput("datasetId").getValue()
07:20:33 print("Running test...") # generate stdout
07:20:33 try:
07:20:33 dataset = qs.find("Dataset", ds_Id)
07:20:33 ds_Name = dataset.name.val
07:20:33 print(ds_Name)
07:20:33 except Exception:
07:20:33 ds_Name = "Not Found"
07:20:33 client.setOutput("gid", omero.rtypes.rlong(gid))
07:20:33 client.setOutput("datasetName", omero.rtypes.rstring(ds_Name))
07:20:33 """
07:20:33 svc = gatewaywrapper.gateway.getScriptService()
07:20:33 scriptID = svc.uploadOfficialScript(
07:20:33 "/test/ticket8573/%s" % uuid, SCRIPT)
07:20:33 # switch user into new group
07:20:33 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
07:20:33 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
07:20:33 omero.model.ExperimenterGroupI(gid, False))
07:20:33 assert switched, "Failed to switch into new group"
07:20:33 # Shouldn't be able to access Dataset...
07:20:33 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:20:33 assert value is None
07:20:33 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup(
07:20:33 str(default_groupId))
07:20:33 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
07:20:33 assert value is not None
07:20:33 # run script
07:20:33 svc = gatewaywrapper.gateway.getScriptService()
07:20:33 > process = svc.runScript(scriptID, {"datasetId": rlong(new_ds_Id)},
07:20:33 None, gatewaywrapper.gateway.SERVICE_OPTS)
07:20:33 test/integration/gatewaytest/test_multi_group.py:188:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4833: in __call__
07:20:33 return self.handle_exception(e, *args, **kwargs)
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4830: in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = d54f3151-9dfa-4edd-875c-ad81e8c1cd39/089e2eb3-d458-44cf-a4c2-80e7854c6c65omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 scriptID = 5945
07:20:33 inputs = {'datasetId': object #0 (::omero::RLong)
07:20:33 {
07:20:33 _val = 1354
07:20:33 }}
07:20:33 waitSecs = None
07:20:33 _ctx = <ServiceOptsDict: {'omero.client.uuid': '089e2eb3-d458-44cf-a4c2-80e7854c6c65', 'omero.session.uuid': 'd54f3151-9dfa-4edd-875c-ad81e8c1cd39', 'omero.group': '3660'}>
07:20:33 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:20:33 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:20:33 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 E {
07:20:33 E serverStackTrace =
07:20:33 E serverExceptionClass =
07:20:33 E message = No processor available! [0 response(s)]
07:20:33 E processorCount = 0
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:20:33 ------------------------------ Captured log setup ------------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=dcdee531-c152-4819-a484-cab5a35c933a)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=fe11957c-bad4-4650-9264-b1c79fadd466)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=268b3252-f64a-41c7-9850-1f02945f4114)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=51629970-90ef-46ec-a2d0-93dcba5af293)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=b0c9679d-30f0-401e-beca-bbb7f13ea5a3)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=341ef0f9-a78c-4e9c-96ab-1c4520e7d67c)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=0d0dafe6-5343-40d8-aec7-cf281f90520c)
07:20:33 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <3563e752-86b5-4c69-a9fb-369999721e39omero.api.IAdmin> lookupExperimenter(('script_test_user',), {})
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
07:20:33 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
07:20:33 omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: script_test_user
07:20:33 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor650.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor650.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupExperimenter(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3384.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3383.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.lookupExperimenter_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
07:20:33 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No such experimenter: script_test_user
07:20:33 }
07:20:33 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <3563e752-86b5-4c69-a9fb-369999721e39omero.api.IAdmin> lookupGroup(('rw_script',), {})
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
07:20:33 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
07:20:33 omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_script
07:20:33 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor594.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor594.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.lookupGroup(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor617.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor616.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.lookupGroup_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
07:20:33 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No such group: rw_script
07:20:33 }
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=0365eb03-02d1-421a-b014-74b64016298c)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=76511d1a-ba01-4e84-8f52-469ae4733a42)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=d54f3151-9dfa-4edd-875c-ad81e8c1cd39)
07:20:33 WARNING omero.gateway:__init__.py:4810 NoProcessorAvailable on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <089e2eb3-d458-44cf-a4c2-80e7854c6c65omero.api.IScript> runScript((5945, {'datasetId': object #0 (::omero::RLong)
07:20:33 {
07:20:33 _val = 1354
07:20:33 }}, None, <ServiceOptsDict: {'omero.client.uuid': '089e2eb3-d458-44cf-a4c2-80e7854c6c65', 'omero.session.uuid': 'd54f3151-9dfa-4edd-875c-ad81e8c1cd39', 'omero.group': '3660'}>), {})
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
07:20:33 return self.f(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 935, in runScript
07:20:33 return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:20:33 omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 {
07:20:33 serverStackTrace =
07:20:33 serverExceptionClass =
07:20:33 message = No processor available! [0 response(s)]
07:20:33 processorCount = 0
07:20:33 }
07:20:33 --------------------------- Captured stderr teardown ---------------------------
07:20:33 **
07:20:33 ---------------------------- Captured log teardown -----------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=9d861398-096a-4feb-83ef-b194d453b48f)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=0129900b-9556-4098-9fc9-d2fa76d9eaab)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=641abfd9-5473-46b4-8bfc-0e29a3529ccb)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ___________________ TestPerformance.testListFileAnnotations ____________________
07:20:33 self = <test.integration.gatewaytest.test_performance.TestPerformance object at 0x7f98e0334d00>
07:20:33 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98aa59d370>
07:20:33 @pytest.mark.broken(ticket="11494")
07:20:33 def testListFileAnnotations(self, gatewaywrapper):
07:20:33 """
07:20:33 testListFileAnnotations: test speed of getObjects('FileAnnotation') vv
07:20:33 listFileAnnotations()
07:20:33 """
07:20:33 gatewaywrapper.loginAsAuthor()
07:20:33 updateService = gatewaywrapper.gateway.getUpdateService()
07:20:33 def createFileAnnotation(name, ns):
07:20:33 originalFile = omero.model.OriginalFileI()
07:20:33 originalFile.setName(rstring(name))
07:20:33 originalFile.setPath(rstring(name))
07:20:33 originalFile.setSize(rlong(0))
07:20:33 originalFile.setHash(rstring("Foo"))
07:20:33 originalFile = updateService.saveAndReturnObject(originalFile)
07:20:33 fa = omero.model.FileAnnotationI()
07:20:33 fa.setFile(originalFile)
07:20:33 fa.setNs(rstring(ns))
07:20:33 fa = updateService.saveAndReturnObject(fa)
07:20:33 return fa.id.val
07:20:33 ns = "omero.gatewaytest.PerformanceTest.testListFileAnnotations"
07:20:33 fileCount = 250
07:20:33 fileAnnIds = [createFileAnnotation("testListFileAnnotations%s" % i,
07:20:33 ns) for i in range(fileCount)]
07:20:33 # test speed of listFileAnnotations
07:20:33 startTime = time.time()
07:20:33 fileCount = 0
07:20:33 fileAnns = gatewaywrapper.gateway.listFileAnnotations(toInclude=[ns])
07:20:33 for fa in fileAnns:
07:20:33 fa.getFileName()
07:20:33 fileCount += 1
07:20:33 t1 = time.time() - startTime
07:20:33 print("listFileAnnotations for %d files = %s secs" % (fileCount, t1))
07:20:33 # Typically 1.4 secs
07:20:33 # test speed of getOjbects("Annotation") - lazy loading file names
07:20:33 startTime = time.time()
07:20:33 fileCount = 0
07:20:33 fileAnns = gatewaywrapper.gateway.getObjects(
07:20:33 "FileAnnotation", attributes={'ns': ns})
07:20:33 for fa in fileAnns:
07:20:33 fa.getFileName()
07:20:33 fileCount += 1
07:20:33 t2 = time.time() - startTime
07:20:33 print("getObjects, lazy loading file names for %d files = %s secs"
07:20:33 % (fileCount, t2)) # Typically 2.8 secs
07:20:33 # test speed of getOjbects("Annotation") - NO loading file names
07:20:33 startTime = time.time()
07:20:33 fileCount = 0
07:20:33 fileAnns = gatewaywrapper.gateway.getObjects(
07:20:33 "FileAnnotation", attributes={'ns': ns})
07:20:33 for fa in fileAnns:
07:20:33 fa.getId()
07:20:33 fileCount += 1
07:20:33 t3 = time.time() - startTime
07:20:33 print("getObjects, NO file names for %d files = %s secs"
07:20:33 % (fileCount, t3)) # Typically 0.4 secs
07:20:33 > assert t1 < t2, "Blitz listFileAnnotations() should be faster " \
07:20:33 "than getObjects('FileAnnotation')"
07:20:33 E AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:20:33 E assert 0.31067991256713867 < 0.16005635261535645
07:20:33 test/integration/gatewaytest/test_performance.py:91: AssertionError
07:20:33 ------------------------------ Captured log setup ------------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=8a611e6e-cc22-4e27-b0fe-be8e1cc0f206)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=6ca23568-0d0e-4715-95e4-881e70787983)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=636dbbbd-4f22-4928-8708-e75ddbb99322)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=1e8c7339-7bf2-4973-99d2-c5b7321fe3f9)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=0a167ac6-94c8-4f5b-be2b-31c6ff56a9a9)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=0b46fdd8-3290-40f9-bfd4-a9ff869c6121)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ----------------------------- Captured stdout call -----------------------------
07:20:33 listFileAnnotations for 250 files = 0.31067991256713867 secs
07:20:33 getObjects, lazy loading file names for 250 files = 0.16005635261535645 secs
07:20:33 getObjects, NO file names for 250 files = 0.1454308032989502 secs
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=1f5df8ed-f441-4d33-b390-5ef1a5554da0)
07:20:33 --------------------------- Captured stderr teardown ---------------------------
07:20:33 **
07:20:33 ---------------------------- Captured log teardown -----------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=954cb49d-11ff-406e-9bae-b574caeb2874)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=081ca03d-8a9a-4d9a-9a1f-b5a9b72d7538)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=c3417eaa-f28d-444f-9f13-e05f236f66a3)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 _________________________ TestUser.testCrossGroupRead __________________________
07:20:33 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f98e0310640>
07:20:33 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98aa47edc0>
07:20:33 @pytest.mark.broken(ticket="11545")
07:20:33 def testCrossGroupRead(self, gatewaywrapper):
07:20:33 gatewaywrapper.loginAsAuthor()
07:20:33 p = gatewaywrapper.getTestProject()
07:20:33 assert str(p.getDetails().permissions)[4] == '-'
07:20:33 d = p.getDetails()
07:20:33 g = d.getGroup()
07:20:33 gatewaywrapper.loginAsUser()
07:20:33 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup('-1')
07:20:33 > assert not g.getId() in \
07:20:33 gatewaywrapper.gateway.getEventContext().memberOfGroups
07:20:33 E assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:20:33 E + where 2719 = getId()
07:20:33 E + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:20:33 E + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 72c37736-b77b-482b-8318-bfc3f940aba0\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:20:33 E + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 72c37736-b77b-482b-8318-bfc3f940aba0\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:20:33 E + where getEventContext = <omero.gateway._BlitzGateway object at 0x7f98e092f940>.getEventContext
07:20:33 E + where <omero.gateway._BlitzGateway object at 0x7f98e092f940> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98aa47edc0>.gateway
07:20:33 test/integration/gatewaytest/test_user.py:127: AssertionError
07:20:33 ------------------------------ Captured log setup ------------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=12b9d2f0-2aa5-4c8a-b6f0-57b99c977082)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=eb582e5c-ad65-45a0-aa9e-9eb1ee3a5791)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=404df826-3916-4458-b245-c333d08277d2)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=80ece67e-2bc2-4faa-80dc-d269a3dc7316)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=3d36427e-11df-42ec-918e-33c6be66350d)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=2c09c305-b138-48ca-be79-0f815f6fae80)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=a629c34c-5131-4a05-9100-9e86192a0f84)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=72c37736-b77b-482b-8318-bfc3f940aba0)
07:20:33 --------------------------- Captured stderr teardown ---------------------------
07:20:33 **
07:20:33 ---------------------------- Captured log teardown -----------------------------
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=b938178c-a2a6-47cd-875c-412b871224a2)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=9e5cb40f-71d6-412b-a7f6-bb14bb8f0dc6)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 INFO omero.gateway:__init__.py:2243 created connection (uuid=03742b0f-411c-463c-95c2-c622d7e5e5bf)
07:20:33 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
07:20:33 _________________________ TestPing.testProcessCallback _________________________
07:20:33 self = <test.integration.scriptstest.test_ping.TestPing object at 0x7f98e0246a30>
07:20:33 @pytest.mark.broken(ticket="11494")
07:20:33 def testProcessCallback(self):
07:20:33 callback = CallbackI()
07:20:33 id = self.client.getCommunicator().stringToIdentity(str(uuid.uuid4()))
07:20:33 cb = self.client.getAdapter().add(callback, id)
07:20:33 cb = omero.grid.ProcessCallbackPrx.uncheckedCast(cb)
07:20:33 p = self._getProcessor()
07:20:33 params = p.params()
07:20:33 assert params.stdoutFormat
07:20:33 process = p.execute(rmap({}))
07:20:33 process.registerCallback(cb)
07:20:33 self.assertSuccess(p, process)
07:20:33 > assert len(callback.finish) > 0
07:20:33 E assert 0 > 0
07:20:33 E + where 0 = len([])
07:20:33 E + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:20:33 test/integration/scriptstest/test_ping.py:214: AssertionError
07:20:33 ______________________ TestScriptRepo.testGetGroupScripts ______________________
07:20:33 self = <test.integration.scriptstest.test_repo.TestScriptRepo object at 0x7f98e01d5550>
07:20:33 @pytest.mark.broken(ticket="11494")
07:20:33 def testGetGroupScripts(self):
07:20:33 scriptService = self.sf.getScriptService()
07:20:33 client = self.new_client(self.group)
07:20:33 sid = client.sf.getScriptService().uploadScript(
07:20:33 "/test/otheruser.py",
07:20:33 """if True:
07:20:33 import omero, omero.scripts as OS
07:20:33 OS.client("testGetGroupScripts")
07:20:33 """)
07:20:33 myGroupScripts = scriptService.getUserScripts(
07:20:33 [omero.model.ExperimenterGroupI(self.group.id.val, False)])
07:20:33 > assert sid in [x.id.val for x in myGroupScripts]
07:20:33 E assert 6201 in []
07:20:33 test/integration/scriptstest/test_repo.py:78: AssertionError
07:20:33 _____________________________ TestTables.test2098 ______________________________
07:20:33 self = <test_service.TestTables object at 0x7f98d984c9a0>
07:20:33 @pytest.mark.broken(ticket="11534")
07:20:33 def test2098(self):
07:20:33 """
07:20:33 Creates and downloads an HDF file and checks
07:20:33 that its size and hash match whats in the db
07:20:33 """
07:20:33 grid = self.client.sf.sharedResources()
07:20:33 table = grid.newTable(1, "/test")
07:20:33 assert table
07:20:33 lc = columns.LongColumnI('lc', 'desc', [1])
07:20:33 file = None
07:20:33 try:
07:20:33 file = table.getOriginalFile()
07:20:33 assert file
07:20:33 table.initialize([lc])
07:20:33 table.addData([lc])
07:20:33 finally:
07:20:33 # Not deleting since queried
07:20:33 table.close()
07:20:33 # Reload the file
07:20:33 file = self.client.sf.getQueryService().get(
07:20:33 "OriginalFile", file.id.val)
07:20:33 # Check values
07:20:33 > p = path.path(self.tmpfile())
07:20:33 E AttributeError: type object 'path' has no attribute 'path'
07:20:33 test/integration/tablestest/test_service.py:154: AttributeError
07:20:33 _________________________ TestTables.testReadOnlyFile __________________________
07:20:33 self = <test_service.TestTables object at 0x7f98d97dda30>
07:20:33 @pytest.mark.broken(ticket="unimplemented")
07:20:33 def testReadOnlyFile(self):
07:20:33 """
07:20:33 Create an HDF5 file on the server, and then mark it read-only.
07:20:33 The server should still allow you to load & read that file.
07:20:33 """
07:20:33 self.testBlankTable() # ofile
07:20:33 > filename = self.unique_dir + "/file.txt"
07:20:33 E AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:20:33 test/integration/tablestest/test_service.py:661: AttributeError
07:20:33 ___________________________ TestTables.testReadEqual ___________________________
07:20:33 self = <test_service.TestTables object at 0x7f98d97e6c10>
07:20:33 twoColumnFiveRowTable = 43a02aef-5d4d-49b7-b5d9-ef834c617307/Table-b1d09b84-91c8-42f0-91e1-42dceb92fe8e -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 @pytest.mark.broken(reason="start=0,end=0 to be reviewed")
07:20:33 def testReadEqual(self, twoColumnFiveRowTable):
07:20:33 # start=0, end=0 has a special contract
07:20:33 data = twoColumnFiveRowTable.read([0], 0, 0)
07:20:33 assert 1 == len(data.columns)
07:20:33 > assert [1] == data.columns[0].values
07:20:33 E assert [1] == [1, 2, 3, 4, 5]
07:20:33 E
07:20:33 E Right contains 4 more items, first extra item: 2
07:20:33 E
07:20:33 E Full diff:
07:20:33 E [
07:20:33 E 1,
07:20:33 E - 2,
07:20:33 E - 3,
07:20:33 E - 4,
07:20:33 E - 5,
07:20:33 E ]
07:20:33 test/integration/tablestest/test_service.py:967: AssertionError
07:20:33 ________________________ TestTables.testReadOutOfRange _________________________
07:20:33 self = <test_service.TestTables object at 0x7f98d97e83d0>
07:20:33 twoColumnFiveRowTable = 43a02aef-5d4d-49b7-b5d9-ef834c617307/Table-da36e651-ede1-4ee3-bd85-290c60f69c6d -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 @pytest.mark.broken(reason="need to be reviewed")
07:20:33 def testReadOutOfRange(self, twoColumnFiveRowTable):
07:20:33 # [1, 2, 3, 4, 5][-1:5] = [5]
07:20:33 data = twoColumnFiveRowTable.read([0], -1, 5)
07:20:33 assert 1 == len(data.columns)
07:20:33 assert [5] == data.columns[0].values
07:20:33 > assert [4] == data.rowNumbers
07:20:33 E assert [4] == [-1, 0, 1, 2, 3, 4]
07:20:33 E
07:20:33 E At index 0 diff: 4 != -1
07:20:33 E Right contains 5 more items, first extra item: 0
07:20:33 E
07:20:33 E Full diff:
07:20:33 E [
07:20:33 E - -1,
07:20:33 E - 0,
07:20:33 E - 1,
07:20:33 E - 2,
07:20:33 E - 3,
07:20:33 E 4,
07:20:33 E ]
07:20:33 test/integration/tablestest/test_service.py:1015: AssertionError
07:20:33 ____________________ TestAdmin.testChangePasswordWhenUnset _____________________
07:20:33 self = <test.integration.test_admin.TestAdmin object at 0x7f98d97f3ee0>
07:20:33 @pytest.mark.broken(reason="Empty password disabled by config",
07:20:33 ticket="3201")
07:20:33 def testChangePasswordWhenUnset(self):
07:20:33 """
07:20:33 Shows that it's possible to use the
07:20:33 changePasswordWithOldPassword when
07:20:33 previously no password was set.
07:20:33 See ticket:3201
07:20:33 """
07:20:33 client = self.new_client()
07:20:33 admin = client.sf.getAdminService()
07:20:33 # By setting the user's password to the empty string
07:20:33 # any password will be allowed as the old password
07:20:33 admin.changePassword(rstring(""))
07:20:33 > admin.changePasswordWithOldPassword(rstring("IGNORED"), rstring("ome"))
07:20:33 test/integration/test_admin.py:118:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = e651af1a-d489-4896-a9a0-35282f8f21b0/5a488d2b-6c1b-4bdd-bd06-0567754259e5omero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 oldPassword = object #0 (::omero::RString)
07:20:33 {
07:20:33 _val = IGNORED
07:20:33 }
07:20:33 newPassword = object #0 (::omero::RString)
07:20:33 {
07:20:33 _val = ome
07:20:33 }, _ctx = None
07:20:33 def changePasswordWithOldPassword(self, oldPassword, newPassword, _ctx=None):
07:20:33 > return _M_omero.api.IAdmin._op_changePasswordWithOldPassword.invoke(self, ((oldPassword, newPassword), _ctx))
07:20:33 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:20:33 E at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy99.changePasswordWithOldPassword_async(Unknown Source)
07:20:33 E at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:20:33 E at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:20:33 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 E message = Old password is invalid
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2460: SecurityViolation
07:20:33 ______________________________ TestAdmin.test9193 ______________________________
07:20:33 self = <test.integration.test_admin.TestAdmin object at 0x7f98d97fce20>
07:20:33 @pytest.mark.broken(reason="Is this test still valid?", ticket="11465")
07:20:33 def test9193(self):
07:20:33 # Test the removal of removing users
07:20:33 # from a group when the group in question
07:20:33 # may be their last (i.e. default) group
07:20:33 g = self.new_group()
07:20:33 u = self.new_user(group=g)
07:20:33 # Test removing the default group
07:20:33 > self.remove_experimenters(g, [u])
07:20:33 test/integration/test_admin.py:240:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:247: in remove_experimenters
07:20:33 admin.removeGroups(user, [group])
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 2781a63c-231f-45a9-98f6-92a3b5b7659b/f8f6beea-e78f-4334-805c-9817d3e385c5omero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 user = object #0 (::omero::model::Experimenter)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 4726
07:20:33 }
07:20:33 _d...annotationLinksSeq =
07:20:33 {
07:20:33 }
07:20:33 _annotationLinksLoaded = False
07:20:33 _annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 }
07:20:33 groups = [object #0 (::omero::model::ExperimenterGroup)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 3667
07:20:33 }
07:20:33 ...{
07:20:33 }
07:20:33 _annotationLinksLoaded = False
07:20:33 _annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _description = <nil>
07:20:33 }]
07:20:33 _ctx = None
07:20:33 def removeGroups(self, user, groups, _ctx=None):
07:20:33 > return _M_omero.api.IAdmin._op_removeGroups.invoke(self, ((user, groups), _ctx))
07:20:33 E omero.ValidationException: exception ::omero::ValidationException
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:20:33 E at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor639.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor639.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3281.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3280.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy99.removeGroups_async(Unknown Source)
07:20:33 E at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:20:33 E at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:20:33 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.ValidationException
07:20:33 E message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2011: ValidationException
07:20:33 _________________ TestFiles.testUploadDifferentSizeTicket2337 __________________
07:20:33 self = <test.integration.test_files.TestFiles object at 0x7f98d9718340>
07:20:33 @pytest.mark.broken(ticket="11610")
07:20:33 def testUploadDifferentSizeTicket2337(self):
07:20:33 uploaded = tmpfile()
07:20:33 ofile = self.client.upload(str(uploaded), type="text/plain")
07:20:33 uploaded.write_lines(["abc", "def"]) # Shorten
07:20:33 > ofile = self.client.upload(
07:20:33 str(uploaded), type="text/plain", ofile=ofile)
07:20:33 test/integration/test_files.py:62:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero/clients.py:878: in upload
07:20:33 ofile = up.saveAndReturnObject(ofile)
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 51048518-8669-47f5-82db-6418f04adb7d/35902482-a188-445a-9c7c-670749ad2b12omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 obj = object #0 (::omero::model::OriginalFile)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 6206
07:20:33 }
07:20:33 _d...ksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _name = object #60 (::omero::RString)
07:20:33 {
07:20:33 _val = omero82g_bfqu.tmp
07:20:33 }
07:20:33 }
07:20:33 _ctx = None
07:20:33 def saveAndReturnObject(self, obj, _ctx=None):
07:20:33 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:20:33 E omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124713 to ome.model.meta.Event:Id_124712
07:20:33 E You may need to reload the object before continuing.
07:20:33 E at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:20:33 E at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:20:33 E at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:20:33 E at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:20:33 E at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:20:33 E at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:20:33 E at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:20:33 E at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:20:33 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:20:33 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:20:33 E at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:20:33 E at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:20:33 E at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.OptimisticLockException
07:20:33 E message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124713 to ome.model.meta.Event:Id_124712
07:20:33 E You may need to reload the object before continuing.
07:20:33 E backOff = 0
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: OptimisticLockException
07:20:33 _____________________________ TestIShare.test1172 ______________________________
07:20:33 self = <test.integration.test_ishare.TestIShare object at 0x7f98d96edb50>
07:20:33 @pytest.mark.broken(reason="shares are image-centric for now")
07:20:33 def test1172(self):
07:20:33 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:20:33 share = self.root.sf.getShareService()
07:20:33 query = self.root.sf.getQueryService()
07:20:33 # create user
07:20:33 client_share1, user1 = self.new_client_and_user()
07:20:33 # create dataset with image
07:20:33 ds = self.make_dataset(name="dataset-%s" % uuid, client=self.root)
07:20:33 img = self.new_image(name='test-img in dataset-%s' % uuid)
07:20:33 self.link(ds, img, client=self.root)
07:20:33 items = list()
07:20:33 p = omero.sys.Parameters()
07:20:33 p.map = {"oid": ds.id}
07:20:33 sql = (
07:20:33 "select ds from Dataset ds "
07:20:33 "join fetch ds.details.owner "
07:20:33 "join fetch ds.details.group "
07:20:33 "left outer join fetch ds.imageLinks dil "
07:20:33 "left outer join fetch dil.child i "
07:20:33 "where ds.id=:oid")
07:20:33 items.extend(query.findAllByQuery(sql, p))
07:20:33 assert 1 == len(items)
07:20:33 # members
07:20:33 p.map["eid"] = rlong(user1.id.val)
07:20:33 sql = ("select e from Experimenter e "
07:20:33 "where e.id =:eid order by e.omeName")
07:20:33 ms = query.findAllByQuery(sql, p)
07:20:33 sid = share.createShare(("test-share-%s" % uuid),
07:20:33 rtime(int(time.time() * 1000 + 86400)),
07:20:33 items, ms, [], True)
07:20:33 # USER RETRIEVAL
07:20:33 # login as user1
07:20:33 share1 = client_share1.sf.getShareService()
07:20:33 query1 = client_share1.sf.getQueryService()
07:20:33 content = share1.getContents(sid)
07:20:33 # Content now contains just the dataset with nothing loaded
07:20:33 assert 1 == len(content)
07:20:33 # get shared dataset and image when share is activated
07:20:33 share1.activate(sid)
07:20:33 # retrieve dataset
07:20:33 p = omero.sys.Parameters()
07:20:33 p.map = {"ids": rlist([ds.id])}
07:20:33 sql = (
07:20:33 "select ds from Dataset ds "
07:20:33 "join fetch ds.details.owner "
07:20:33 "join fetch ds.details.group "
07:20:33 "left outer join fetch ds.imageLinks dil "
07:20:33 "left outer join fetch dil.child i "
07:20:33 "where ds.id in (:ids) order by ds.name")
07:20:33 try:
07:20:33 res1 = query1.findAllByQuery(sql, p)
07:20:33 assert False, "This should throw an exception"
07:20:33 except Exception:
07:20:33 pass
07:20:33 # Now we add all the other elements to the share to prevent
07:20:33 # the security violation
07:20:33 #
07:20:33 # Not working imgs = cntar.getImages("Dataset",[ds.id.val], None)
07:20:33 img = query.findByQuery(
07:20:33 "select i from Image i join fetch i.datasetLinks dil "
07:20:33 "join dil.parent d where d.id = %s " % ds.id.val, None)
07:20:33 assert img
07:20:33 share.addObject(sid, img)
07:20:33 share.addObjects(sid, img.copyDatasetLinks())
07:20:33 assert 3 == len(share.getContents(sid))
07:20:33 # And try again to load them
07:20:33 share1.activate(sid)
07:20:33 res1 = query1.findAllByQuery(sql, p)
07:20:33 > assert len(res1) == 1
07:20:33 E assert 0 == 1
07:20:33 E + where 0 = len([])
07:20:33 test/integration/test_ishare.py:381: AssertionError
07:20:33 ____________________________ TestITimeline.test1225 ____________________________
07:20:33 self = <test.integration.test_itimeline.TestITimeline object at 0x7f98d9707190>
07:20:33 @pytest.mark.broken(ticket="1225")
07:20:33 def test1225(self):
07:20:33 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
07:20:33 update = self.root.sf.getUpdateService()
07:20:33 timeline = self.root.sf.getTimelineService()
07:20:33 query = self.root.sf.getQueryService()
07:20:33 # create dataset
07:20:33 to_save = list()
07:20:33 for i in range(0, 10):
07:20:33 to_save.append(self.new_dataset(name="ds-%i-%s" % (i, uuid)))
07:20:33 dss = update.saveAndReturnArray(to_save)
07:20:33 # create tag
07:20:33 for i in range(0, 10):
07:20:33 ds1 = query.get("Dataset", dss[i].id.val)
07:20:33 ann = omero.model.TagAnnotationI()
07:20:33 ann.textValue = rstring('tag-%i-%s' % (i, uuid))
07:20:33 ann.setDescription(rstring('desc-%i-%s' % (i, uuid)))
07:20:33 t_ann = omero.model.DatasetAnnotationLinkI()
07:20:33 t_ann.setParent(ds1)
07:20:33 t_ann.setChild(ann)
07:20:33 update.saveObject(t_ann)
07:20:33 p = omero.sys.Parameters()
07:20:33 p.map = {}
07:20:33 f = omero.sys.Filter()
07:20:33 f.ownerId = rlong(0)
07:20:33 f.limit = rint(10)
07:20:33 p.theFilter = f
07:20:33 M = timeline.getMostRecentAnnotationLinks
07:20:33 tagids = set([e.child.id.val for e in
07:20:33 M(None, ['TagAnnotation'], None, p)])
07:20:33 assert len(tagids) == 10
07:20:33 # And under #9609
07:20:33 tagids = set([e.child.id.val for e in
07:20:33 M(None, ['TagAnnotation'], None, p,
07:20:33 {"omero.group": "-1"})])
07:20:33 > assert len(tagids) == 10
07:20:33 E assert 6 == 10
07:20:33 E + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:20:33 test/integration/test_itimeline.py:244: AssertionError
07:20:33 ___________________________ TestPermissions.test3136 ___________________________
07:20:33 self = <test.integration.test_permissions.TestPermissions object at 0x7f98b95740d0>
07:20:33 @pytest.mark.broken(ticket="11494")
07:20:33 def test3136(self):
07:20:33 """
07:20:33 Calls to updateGroup were taking too long
07:20:33 because the default value of permissions
07:20:33 returned by the server was triggering a
07:20:33 full changePermissions event.
07:20:33 """
07:20:33 admin = self.root.sf.getAdminService()
07:20:33 group = self.new_group(perms="rw----")
07:20:33 # Change the name but not the permissions
07:20:33 group.name = rstring(self.uuid())
07:20:33 elapsed1, rv = self.timeit(admin.updateGroup, group)
07:20:33 # Now change the name and the permissions
07:20:33 group.name = rstring(self.uuid())
07:20:33 group.details.permissions = omero.model.PermissionsI("rwr---")
07:20:33 elapsed2, rv = self.timeit(admin.updateGroup, group)
07:20:33 # Locally this test always fails as the two times are
07:20:33 # the same order of magnitude. This may be an indication that
07:20:33 # the relevant ticket:
07:20:33 # https://trac.openmicroscopy.org/ome/ticket/3136
07:20:33 # is still valid. Does the ticket need re-opening
07:20:33 # or does the test condition need relaxing?
07:20:33 > assert elapsed1 < (0.1 * elapsed2), \
07:20:33 "elapsed1=%s, elapsed2=%s" % (elapsed1, elapsed2)
07:20:33 E AssertionError: elapsed1=0.01662445068359375, elapsed2=0.014768123626708984
07:20:33 E assert 0.01662445068359375 < (0.1 * 0.014768123626708984)
07:20:33 test/integration/test_permissions.py:488: AssertionError
07:20:33 __________________ TestPermissions.testSaveWithNegOneExplicit __________________
07:20:33 self = <test.integration.test_permissions.TestPermissions object at 0x7f98b9577790>
07:20:33 @pytest.mark.broken(ticket="11374")
07:20:33 def testSaveWithNegOneExplicit(self):
07:20:33 # Get a user and services
07:20:33 client, user = self.new_client_and_user()
07:20:33 # Create a new object with an explicit group
07:20:33 admin = client.sf.getAdminService()
07:20:33 ec = admin.getEventContext()
07:20:33 grp = omero.model.ExperimenterGroupI(ec.groupId, False)
07:20:33 tag = omero.model.TagAnnotationI()
07:20:33 tag.details.group = grp
07:20:33 # Now try to save it in the -1 context
07:20:33 update = client.sf.getUpdateService()
07:20:33 all_context = {"omero.group": "-1"}
07:20:33 > update.saveAndReturnObject(tag, all_context)
07:20:33 test/integration/test_permissions.py:586:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 2048bffd-96fe-4bf4-a927-cb21d4f122a3/f6b43dee-34e4-4a46-b2bf-a282eb24d83fomero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 obj = object #0 (::omero::model::TagAnnotation)
07:20:33 {
07:20:33 _id = <nil>
07:20:33 _details = object #1 (::omero::model::Details)
07:20:33 {
07:20:33 ...nksSeq =
07:20:33 {
07:20:33 }
07:20:33 _annotationLinksLoaded = True
07:20:33 _annotationLinksCountPerOwner = {}
07:20:33 _textValue = <nil>
07:20:33 }
07:20:33 _ctx = {'omero.group': '-1'}
07:20:33 def saveAndReturnObject(self, obj, _ctx=None):
07:20:33 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:20:33 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:20:33 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:20:33 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:20:33 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:20:33 ____________________ TestPermissions.testSaveWithNegBadLink ____________________
07:20:33 self = <test.integration.test_permissions.TestPermissions object at 0x7f98b95eddc0>
07:20:33 @pytest.mark.broken(ticket="11374")
07:20:33 def testSaveWithNegBadLink(self): # ticket:8194
07:20:33 # Get a user and services
07:20:33 client, user = self.new_client_and_user()
07:20:33 admin = client.sf.getAdminService()
07:20:33 group1 = admin.getGroup(admin.getEventContext().groupId)
07:20:33 group2 = self.new_group(experimenters=[user])
07:20:33 for x in (group1, group2):
07:20:33 x.unload()
07:20:33 admin.getEventContext() # Refresh
07:20:33 # Create a new object with a bad link
07:20:33 image = self.new_image()
07:20:33 image.details.group = group1
07:20:33 tag = omero.model.TagAnnotationI()
07:20:33 tag.details.group = group2
07:20:33 link = image.linkAnnotation(tag)
07:20:33 link.details.group = group2
07:20:33 # Now try to save it in the -1 context
07:20:33 update = client.sf.getUpdateService()
07:20:33 all_context = {"omero.group": "-1"}
07:20:33 # Bad links should be detected and
07:20:33 # a security violation raised.
07:20:33 with pytest.raises(omero.GroupSecurityViolation):
07:20:33 > update.saveAndReturnObject(image, all_context)
07:20:33 test/integration/test_permissions.py:635:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 0c8137b0-04b3-4ad5-a7e0-321ae329ba5c/7f5c8bf9-04bf-41f2-a9f8-b69bbdd41595omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 obj = object #0 (::omero::model::Image)
07:20:33 {
07:20:33 _id = <nil>
07:20:33 _details = object #1 (::omero::model::Details)
07:20:33 {
07:20:33 _...e150dc-1658-4f95-8a76-df2b7390c95c
07:20:33 }
07:20:33 _description = object #14 (::omero::RString)
07:20:33 {
07:20:33 _val =
07:20:33 }
07:20:33 }
07:20:33 _ctx = {'omero.group': '-1'}
07:20:33 def saveAndReturnObject(self, obj, _ctx=None):
07:20:33 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:20:33 E omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:20:33 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:20:33 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:20:33 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
07:20:33 _______________________ TestPermissions.testSaveBadLink ________________________
07:20:33 self = <test.integration.test_permissions.TestPermissions object at 0x7f98b95ea640>
07:20:33 @pytest.mark.broken(ticket="11375")
07:20:33 def testSaveBadLink(self):
07:20:33 # Get a user and services
07:20:33 client, user = self.new_client_and_user()
07:20:33 admin = client.sf.getAdminService()
07:20:33 group1 = admin.getGroup(admin.getEventContext().groupId)
07:20:33 group2 = self.new_group(experimenters=[user])
07:20:33 for x in (group1, group2):
07:20:33 x.unload()
07:20:33 admin.getEventContext() # Refresh
07:20:33 # Create a new object with a bad link
07:20:33 image = self.new_image()
07:20:33 image.details.group = group1
07:20:33 tag = omero.model.TagAnnotationI()
07:20:33 tag.details.group = group2
07:20:33 link = image.linkAnnotation(tag)
07:20:33 link.details.group = group2
07:20:33 # Now try to save it
07:20:33 update = client.sf.getUpdateService()
07:20:33 # Bad links should be detected and
07:20:33 # a security violation raised.
07:20:33 with pytest.raises(omero.GroupSecurityViolation):
07:20:33 > update.saveAndReturnObject(image)
07:20:33 test/integration/test_permissions.py:664:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 786f3b3c-f31b-49b5-9c34-de43ab9192f5/0886b934-3ebb-4c17-9e6a-649934502855omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 obj = object #0 (::omero::model::Image)
07:20:33 {
07:20:33 _id = <nil>
07:20:33 _details = object #1 (::omero::model::Details)
07:20:33 {
07:20:33 _...483f14-7f37-46b3-9feb-3c792f903202
07:20:33 }
07:20:33 _description = object #14 (::omero::RString)
07:20:33 {
07:20:33 _val =
07:20:33 }
07:20:33 }
07:20:33 _ctx = None
07:20:33 def saveAndReturnObject(self, obj, _ctx=None):
07:20:33 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
07:20:33 E omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:20:33 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:20:33 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:20:33 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:20:33 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:20:33 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:20:33 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:20:33 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:20:33 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:20:33 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:20:33 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 E at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:20:33 E at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:20:33 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:20:33 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:20:33 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 E message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: SecurityViolation
07:20:33 ______ TestPermissions.testUseOfRawFileBeanScriptReadCorrectGroupAndUser _______
07:20:33 self = <test.integration.test_permissions.TestPermissions object at 0x7f98b9580190>
07:20:33 @pytest.mark.broken(ticket="11539")
07:20:33 def testUseOfRawFileBeanScriptReadCorrectGroupAndUser(self):
07:20:33 > self.assertValidScript(lambda v: {
07:20:33 'omero.group': str(v.details.group.id.val),
07:20:33 'omero.user': str(v.details.owner.id.val)
07:20:33 })
07:20:33 test/integration/test_permissions.py:831:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 test/integration/test_permissions.py:813: in assertValidScript
07:20:33 store.setFileId(script.id.val, ctx)
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = 1c3e856c-a106-4a17-b5c6-b039baec5224/d3c7f6fa-0408-429d-871d-b46053b90751omero.api.RawFileStore -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 fileId = 1
07:20:33 _ctx = {'omero.client.uuid': 'f339de1b-bbb2-4807-9d5a-7344a553126a', 'omero.group': '1', 'omero.session.uuid': '1c3e856c-a106-4a17-b5c6-b039baec5224', 'omero.user': '0'}
07:20:33 def setFileId(self, fileId, _ctx=None):
07:20:33 > return _M_omero.api.RawFileStore._op_setFileId.invoke(self, ((fileId, ), _ctx))
07:20:33 E Ice.UnknownException: exception ::Ice::UnknownException
07:20:33 E {
07:20:33 E unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:20:33 E at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:20:33 E at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:20:33 E at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:20:33 E at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 E at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 E at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:20:33 E at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:20:33 E at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:20:33 E at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:20:33 E at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:20:33 E at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_RawFileStore_ice.py:200: UnknownException
07:20:33 _________________________ TestRFS.testTicket1961Basic __________________________
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9538a90>
07:20:33 @pytest.mark.broken(ticket="11534")
07:20:33 def testTicket1961Basic(self):
07:20:33 ofile = self.file()
07:20:33 rfs = self.client.sf.createRawFileStore()
07:20:33 rfs.setFileId(ofile.id.val)
07:20:33 rfs.write([0, 1, 2, 3], 0, 4)
07:20:33 rfs.close()
07:20:33 > self.check_file(ofile)
07:20:33 test/integration/test_rawfilestore.py:49:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9538a90>
07:20:33 ofile = object #0 (::omero::model::OriginalFile)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 6207
07:20:33 }
07:20:33 _d...annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _name = object #26 (::omero::RString)
07:20:33 {
07:20:33 _val = test
07:20:33 }
07:20:33 }
07:20:33 client = <omero.clients.BaseClient object at 0x7f98a054e400>
07:20:33 def check_file(self, ofile, client=None):
07:20:33 if client is None:
07:20:33 client = self.client
07:20:33 query = client.sf.getQueryService()
07:20:33 ofile = query.get("OriginalFile", ofile.id.val)
07:20:33 assert ofile.size.val != -1
07:20:33 > assert ofile.hash.val != ""
07:20:33 E AssertionError: assert '' != ''
07:20:33 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136104\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 test/integration/test_rawfilestore.py:40: AssertionError
07:20:33 ____________________ TestRFS.testTicket1961WithKillSession _____________________
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9538e50>
07:20:33 @pytest.mark.broken(ticket="11534")
07:20:33 def testTicket1961WithKillSession(self):
07:20:33 ofile = self.file()
07:20:33 grp = self.ctx.groupName
07:20:33 session = self.client.sf.getSessionService().createUserSession(
07:20:33 1 * 1000, 10000, grp)
07:20:33 properties = self.client.getPropertyMap()
07:20:33 c = omero.client(properties)
07:20:33 s = c.joinSession(session.uuid.val)
07:20:33 rfs = s.createRawFileStore()
07:20:33 rfs.setFileId(ofile.id.val)
07:20:33 rfs.write([0, 1, 2, 3], 0, 4)
07:20:33 c.killSession()
07:20:33 > self.check_file(ofile)
07:20:33 test/integration/test_rawfilestore.py:67:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9538e50>
07:20:33 ofile = object #0 (::omero::model::OriginalFile)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 6208
07:20:33 }
07:20:33 _d...annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _name = object #26 (::omero::RString)
07:20:33 {
07:20:33 _val = test
07:20:33 }
07:20:33 }
07:20:33 client = <omero.clients.BaseClient object at 0x7f98a054e400>
07:20:33 def check_file(self, ofile, client=None):
07:20:33 if client is None:
07:20:33 client = self.client
07:20:33 query = client.sf.getQueryService()
07:20:33 ofile = query.get("OriginalFile", ofile.id.val)
07:20:33 assert ofile.size.val != -1
07:20:33 > assert ofile.hash.val != ""
07:20:33 E AssertionError: assert '' != ''
07:20:33 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136184\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 test/integration/test_rawfilestore.py:40: AssertionError
07:20:33 __________________________ TestRFS.testTicket2161Save __________________________
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9542250>
07:20:33 @pytest.mark.broken(ticket="11534")
07:20:33 def testTicket2161Save(self):
07:20:33 ofile = self.file()
07:20:33 rfs = self.client.sf.createRawFileStore()
07:20:33 rfs.setFileId(ofile.id.val)
07:20:33 rfs.write([0, 1, 2, 3], 0, 4)
07:20:33 ofile = rfs.save()
07:20:33 > self.check_file(ofile)
07:20:33 test/integration/test_rawfilestore.py:76:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9542250>
07:20:33 ofile = object #0 (::omero::model::OriginalFile)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 6209
07:20:33 }
07:20:33 _d...annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _name = object #26 (::omero::RString)
07:20:33 {
07:20:33 _val = test
07:20:33 }
07:20:33 }
07:20:33 client = <omero.clients.BaseClient object at 0x7f98a054e400>
07:20:33 def check_file(self, ofile, client=None):
07:20:33 if client is None:
07:20:33 client = self.client
07:20:33 query = client.sf.getQueryService()
07:20:33 ofile = query.get("OriginalFile", ofile.id.val)
07:20:33 assert ofile.size.val != -1
07:20:33 > assert ofile.hash.val != ""
07:20:33 E AssertionError: assert '' != ''
07:20:33 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136223\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 test/integration/test_rawfilestore.py:40: AssertionError
07:20:33 _____________________________ TestRFS.testNoWrite ______________________________
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9542610>
07:20:33 @pytest.mark.broken(ticket="11534")
07:20:33 def testNoWrite(self):
07:20:33 group = self.new_group(perms="rwr---")
07:20:33 client1 = self.new_client(group=group)
07:20:33 client2 = self.new_client(group=group)
07:20:33 ofile = self.file(client=client1)
07:20:33 rfs = client1.sf.createRawFileStore()
07:20:33 rfs.setFileId(ofile.id.val)
07:20:33 rfs.write(b"0123", 0, 4)
07:20:33 rfs.close()
07:20:33 > self.check_file(ofile, client=client1)
07:20:33 test/integration/test_rawfilestore.py:94:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = <test.integration.test_rawfilestore.TestRFS object at 0x7f98b9542610>
07:20:33 ofile = object #0 (::omero::model::OriginalFile)
07:20:33 {
07:20:33 _id = object #1 (::omero::RLong)
07:20:33 {
07:20:33 _val = 6210
07:20:33 }
07:20:33 _d...annotationLinksCountPerOwner =
07:20:33 {
07:20:33 }
07:20:33 _name = object #26 (::omero::RString)
07:20:33 {
07:20:33 _val = test
07:20:33 }
07:20:33 }
07:20:33 client = <omero.clients.BaseClient object at 0x7f98a26a2af0>
07:20:33 def check_file(self, ofile, client=None):
07:20:33 if client is None:
07:20:33 client = self.client
07:20:33 query = client.sf.getQueryService()
07:20:33 ofile = query.get("OriginalFile", ofile.id.val)
07:20:33 assert ofile.size.val != -1
07:20:33 > assert ofile.hash.val != ""
07:20:33 E AssertionError: assert '' != ''
07:20:33 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927141677\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 test/integration/test_rawfilestore.py:40: AssertionError
07:20:33 __________________ TestRepoRawFileStore.testFailedWriteNoFile __________________
07:20:33 self = <test.integration.test_reporawfilestore.TestRepoRawFileStore object at 0x7f98b9565a90>
07:20:33 @pytest.mark.broken(ticket="11610")
07:20:33 def testFailedWriteNoFile(self):
07:20:33 # Without a single write, no file is produced
07:20:33 rfs = self.repoPrx.file(self.repo_filename, "rw") # create empty file
07:20:33 rfs.close()
07:20:33 rfs = self.repoPrx.file(self.repo_filename, "r")
07:20:33 with pytest.raises(omero.ResourceError):
07:20:33 > rfs.size()
07:20:33 E Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:20:33 test/integration/test_reporawfilestore.py:68: Failed
07:20:33 ______________________ TestScripts.testAutoFillTicket2326 ______________________
07:20:33 self = <test.integration.test_scripts.TestScripts object at 0x7f98b94d21c0>
07:20:33 @pytest.mark.broken(ticket="11539")
07:20:33 def testAutoFillTicket2326(self):
07:20:33 SCRIPT = """if True:
07:20:33 import omero.scripts
07:20:33 import omero.rtypes
07:20:33 client = omero.scripts.client(
07:20:33 "ticket2326", omero.scripts.Long("width", optional=True))
07:20:33 width = client.getInput("width")
07:20:33 print(width)
07:20:33 client.setOutput(
07:20:33 "noWidthKey",
07:20:33 omero.rtypes.rbool("width" not in client.getInputKeys()))
07:20:33 client.setOutput("widthIsNull", omero.rtypes.rbool(width is None))
07:20:33 """
07:20:33 impl = omero.processor.usermode_processor(self.client)
07:20:33 svc = self.client.sf.getScriptService()
07:20:33 try:
07:20:33 scriptID = svc.uploadScript("/test/testAutoFillTicket2326", SCRIPT)
07:20:33 > process = svc.runScript(scriptID, {}, None)
07:20:33 test/integration/test_scripts.py:378:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = b768e337-24c6-4786-b5f8-f436b3535793/daf27ea5-b824-450e-ae90-27a2ec91a736omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 scriptID = 6215, inputs = {}, waitSecs = None, _ctx = None
07:20:33 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:20:33 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:20:33 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 E {
07:20:33 E serverStackTrace =
07:20:33 E serverExceptionClass =
07:20:33 E message = No processor available! [0 response(s)]
07:20:33 E processorCount = 0
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.util.Resources:__init__.py:652 Starting
07:20:33 INFO omero.processor.ProcessorI:processor.py:814 Registering processor "\'%U5P@Q30SNFP9;b8cR#/UsermodeProcessor-c66101a8-81ed-4dd7-aa7e-e7453bced49a" -t -e 1.1:tcp -h 127.0.0.1 -p 44383 -t 60000
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4954
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4955
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:20:33 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:20:33 ______________ TestScripts.testParamLoadingPerformanceTicket2285 _______________
07:20:33 self = <test.integration.test_scripts.TestScripts object at 0x7f98b94d2580>
07:20:33 @pytest.mark.broken(reason="Minor performance failure", ticket="11539")
07:20:33 def testParamLoadingPerformanceTicket2285(self):
07:20:33 root_client = self.new_client(system=True)
07:20:33 svc = root_client.sf.getScriptService()
07:20:33 SCRIPT = """if True:
07:20:33 import omero.model as OM
07:20:33 import omero.rtypes as OR
07:20:33 import omero.scripts as OS
07:20:33 c = OS.client("perf test",
07:20:33 OS.Long("a", min=0, max=5),
07:20:33 OS.String("b", values=("a","b","c")),
07:20:33 OS.List("c").ofType(OM.ImageI))
07:20:33 """
07:20:33 upload_time, scriptID = self.timeit(
07:20:33 svc.uploadOfficialScript, "/test/perf%s.py" % self.uuid(), SCRIPT)
07:20:33 impl = omero.processor.usermode_processor(root_client)
07:20:33 try:
07:20:33 params_time, params = self.timeit(svc.getParams, scriptID)
07:20:33 > assert params_time < (upload_time / 10), \
07:20:33 "upload_time(%s) <= 10 * params_time(%s)!" % \
07:20:33 (upload_time, params_time)
07:20:33 E AssertionError: upload_time(0.09835362434387207) <= 10 * params_time(0.5749325752258301)!
07:20:33 E assert 0.5749325752258301 < (0.09835362434387207 / 10)
07:20:33 test/integration/test_scripts.py:412: AssertionError
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4956
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:20:33 handle.close()
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:20:33 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:20:33 omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:20:33 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:20:33 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:20:33 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor537.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:20:33 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor553.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:20:33 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:20:33 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:20:33 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 message = User 4740 is not a member of group 3684 and cannot login
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.parseJob
07:20:33 INFO omero.processor.ProcessorI:processor.py:912 parseJob: Session = 7dad07d1-415e-40f6-8bf0-d2e3bb1ff8f0, JobId = 4956
07:20:33 INFO omero.processor.ProcessorI:processor.py:1034 Using launcher: /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
07:20:33 INFO omero.processor.ProcessorI:processor.py:1035 Using process:
07:20:33 INFO omero.processor.ProcessI:processor.py:137 Created 7dad07d1-415e-40f6-8bf0-d2e3bb1ff8f0 in /home/omero/omero/tmp/omero_omero/1290529/processnhzu715_.dir
07:20:33 INFO omero.remote:decorators.py:78 Excp: 'NoneType' object has no attribute 'add'
07:20:33 WARNING omero.remote:decorators.py:82 <function ProcessorI.parseJob at 0x7f98e0238dc0> raised a non-ServerError (<class 'AttributeError'>): 'NoneType' object has no attribute 'add'
07:20:33 INFO omero.util.Resources:__init__.py:652 Starting
07:20:33 INFO omero.processor.ProcessorI:processor.py:814 Registering processor %%DY6FStt13VMj?&1pEd/UsermodeProcessor-ec321e22-68fc-436f-a848-a552aaf880e9 -t -e 1.1:tcp -h 127.0.0.1 -p 44383 -t 60000
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
07:20:33 handle.close()
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
07:20:33 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
07:20:33 omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.SecurityViolation: User 4740 is not a member of group 3684 and cannot login
07:20:33 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
07:20:33 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:20:33 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor537.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy92.close(Unknown Source)
07:20:33 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor553.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy93.close_async(Unknown Source)
07:20:33 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
07:20:33 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
07:20:33 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 message = User 4740 is not a member of group 3684 and cannot login
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4741, group=3684, script=4957
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
07:20:33 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:20:33 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:20:33 _____________________________ TestScripts.test3527 _____________________________
07:20:33 self = <test.integration.test_scripts.TestScripts object at 0x7f98b95929a0>
07:20:33 @pytest.mark.broken(ticket="11610")
07:20:33 def test3527(self):
07:20:33 SCRIPT = """if True:
07:20:33 import omero.scripts
07:20:33 import omero.rtypes
07:20:33 client = omero.scripts.client("ticket3527", \
07:20:33 omero.scripts.Long("gid", out=True))
07:20:33 ec = client.sf.getAdminService().getEventContext()
07:20:33 gid = ec.groupId
07:20:33 client.setOutput("gid", omero.rtypes.rlong(gid))
07:20:33 """
07:20:33 impl = omero.processor.usermode_processor(self.client)
07:20:33 svc = self.client.sf.getScriptService()
07:20:33 try:
07:20:33 scriptID = svc.uploadScript("/test/test3527", SCRIPT)
07:20:33 > process = svc.runScript(scriptID, {}, None)
07:20:33 test/integration/test_scripts.py:521:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = b768e337-24c6-4786-b5f8-f436b3535793/daf27ea5-b824-450e-ae90-27a2ec91a736omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 scriptID = 6218, inputs = {}, waitSecs = None, _ctx = None
07:20:33 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
07:20:33 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
07:20:33 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 E {
07:20:33 E serverStackTrace =
07:20:33 E serverExceptionClass =
07:20:33 E message = No processor available! [0 response(s)]
07:20:33 E processorCount = 0
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
07:20:33 ------------------------------ Captured log call -------------------------------
07:20:33 INFO omero.util.Resources:__init__.py:652 Starting
07:20:33 INFO omero.processor.ProcessorI:processor.py:814 Registering processor "\'%U5P@Q30SNFP9;b8cR#/UsermodeProcessor-736821e4-150a-4805-b64e-492419a51933" -t -e 1.1:tcp -h 127.0.0.1 -p 44383 -t 60000
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4958
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4740, group=3683, script=4959
07:20:33 Traceback (most recent call last):
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
07:20:33 file, handle = self.lookup(scriptContext)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
07:20:33 file = prx.validateScript(job, self.accepts_list)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
07:20:33 return func(*args, **kwargs)
07:20:33 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
07:20:33 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
07:20:33 omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
07:20:33 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
07:20:33 at ome.services.throttling.Callback2.run(Callback2.java:43)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
07:20:33 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor565.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy94.validateScript_async(Unknown Source)
07:20:33 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
07:20:33 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
07:20:33 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = Found wrong number of files: []
07:20:33 }
07:20:33 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
07:20:33 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
07:20:33 INFO omero.processor.ProcessorI:__init__.py:599 Done
07:20:33 _______________ TestThumbnailPerms.testPrivate10618RootWithNoCtx _______________
07:20:33 self = <test.integration.test_thumbnailPerms.TestThumbnailPerms object at 0x7f98b9486a60>
07:20:33 @pytest.mark.broken(reason="requires thumbnail work")
07:20:33 def testPrivate10618RootWithNoCtx(self):
07:20:33 """
07:20:33 This would require the server to try omero.group=-1
07:20:33 for the user.
07:20:33 """
07:20:33 group = self.new_group(perms="rw----")
07:20:33 > self.assert10618(group, self.root, True)
07:20:33 test/integration/test_thumbnailPerms.py:256:
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 test/integration/test_thumbnailPerms.py:217: in assert10618
07:20:33 s = tb_prx.getThumbnailByLongestSideSet(rint(16), [pId], *ctx)
07:20:33 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
07:20:33 self = ead70173-725a-48c1-930a-13c44829c3db/6695e367-c987-4a3c-afda-c8059cdf9df7omero.api.ThumbnailStore -t -e 1.1:tcp -h 172.18.0.10 -p 36547 -t 60000
07:20:33 size = object #0 (::omero::RInt)
07:20:33 {
07:20:33 _val = 16
07:20:33 }, pixelsIds = [2901]
07:20:33 _ctx = None
07:20:33 def getThumbnailByLongestSideSet(self, size, pixelsIds, _ctx=None):
07:20:33 > return _M_omero.api.ThumbnailStore._op_getThumbnailByLongestSideSet.invoke(self, ((size, pixelsIds), _ctx))
07:20:33 E omero.ResourceError: exception ::omero::ResourceError
07:20:33 E {
07:20:33 E serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:20:33 E at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:20:33 E at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:20:33 E at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3891.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:20:33 E at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3891.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3896.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 E at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 E at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:20:33 E at jdk.internal.reflect.GeneratedMethodAccessor3895.invoke(Unknown Source)
07:20:33 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 E at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 E at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:20:33 E at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:20:33 E at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:20:33 E at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:20:33 E at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 E at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 E at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 E
07:20:33 E serverExceptionClass = ome.conditions.ResourceError
07:20:33 E message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:20:33 E }
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_ThumbnailStore_ice.py:730: ResourceError
07:20:33 ___________________________ TestTickets2000.test1184 ___________________________
07:20:33 self = <test.integration.test_tickets2000.TestTickets2000 object at 0x7f98b945a730>
07:20:33 @pytest.mark.broken(ticket="11543")
07:20:33 def test1184(self):
07:20:33 uuid = self.uuid()
07:20:33 client = self.new_client(perms="rw----")
07:20:33 query = client.sf.getQueryService()
07:20:33 update = client.sf.getUpdateService()
07:20:33 admin = client.sf.getAdminService()
07:20:33 cont = client.sf.getContainerService()
07:20:33 ds = self.new_dataset(name='test1184-ds-%s' % (uuid))
07:20:33 for i in range(1, 2001):
07:20:33 img = self.new_image(name='img1184-%s' % (uuid))
07:20:33 ds.linkImage(img)
07:20:33 ds = update.saveAndReturnObject(ds)
07:20:33 c = cont.getCollectionCount(
07:20:33 ds.__class__.__name__, ("imageLinks"), [ds.id.val], None)
07:20:33 assert c[ds.id.val] == 2000
07:20:33 page = 1
07:20:33 p = omero.sys.Parameters()
07:20:33 p.map = {}
07:20:33 p.map["eid"] = rlong(admin.getEventContext().userId)
07:20:33 p.map["oid"] = rlong(ds.id.val)
07:20:33 if page is not None:
07:20:33 f = omero.sys.Filter()
07:20:33 f.limit = rint(24)
07:20:33 f.offset = rint((int(page) - 1) * 24)
07:20:33 p.theFilter = f
07:20:33 sql = "select im from Image im join fetch im.details.owner " \
07:20:33 "join fetch im.details.group left outer join fetch " \
07:20:33 "im.datasetLinks dil left outer join fetch dil.parent d " \
07:20:33 "where d.id = :oid and im.details.owner.id=:eid " \
07:20:33 "order by im.id asc"
07:20:33 start = time.time()
07:20:33 res = query.findAllByQuery(sql, p)
07:20:33 assert 24 == len(res)
07:20:33 end = time.time()
07:20:33 elapsed = end - start
07:20:33 > assert elapsed < 3.0, \
07:20:33 "Expected the test to complete in < 3 seconds, took: %f" % elapsed
07:20:33 E AssertionError: Expected the test to complete in < 3 seconds, took: 11.162033
07:20:33 E assert 11.162032842636108 < 3.0
07:20:33 test/integration/test_tickets2000.py:370: AssertionError
07:20:33 =============================== warnings summary ===============================
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
07:20:33 import sys, string, imp, os, threading, warnings, datetime
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
07:20:33 warnings.warn(
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
07:20:33 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
07:20:33 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
07:20:33 from pkg_resources import DistributionNotFound, get_distribution
07:20:33 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d]
07:20:33 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r]
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
07:20:33 warnings.warn(
07:20:33 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:20:33 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
07:20:33 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:20:33 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:20:33 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:20:33 logger.warn("%s on %s to <%s> %s(%r, %r)",
07:20:33 OmeroPy/test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/decorators.py:82: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
07:20:33 log.warn(
07:20:33 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx
07:20:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
07:20:33 converted_plane = byte_swapped_plane.tostring()
07:20:33 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
07:20:33 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken/junit-results.xml -
07:20:33 =========================== short test summary info ============================
07:20:33 FAILED test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly - AssertionError: assert False
07:20:33 + where False = <built-in method endswith of str object at 0x7f98acdc6260>('SecurityViolation: Admins only!\n')
07:20:33 + where <built-in method endswith of str object at 0x7f98acdc6260> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
07:20:33 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] - omero.cli.NonZeroReturnCode: assert failed
07:20:33 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] - omero.cli.NonZeroReturnCode: assert failed
07:20:33 FAILED test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory - AssertionError: Logs count should match number of objects
07:20:33 assert 1 == 0
07:20:33 FAILED test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 {
07:20:33 serverStackTrace =
07:20:33 serverExceptionClass =
07:20:33 message = No processor available! [0 response(s)]
07:20:33 processorCount = 0
07:20:33 }
07:20:33 FAILED test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations - AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
07:20:33 assert 0.31067991256713867 < 0.16005635261535645
07:20:33 FAILED test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead - assert not 2719 in [2718, 1, 2730, 2719, 2780]
07:20:33 + where 2719 = getId()
07:20:33 + where getId = <_ExperimenterGroupWrapper id=2719>.getId
07:20:33 + and [2718, 1, 2730, 2719, 2780] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 72c37736-b77b-482b-8318-bfc3f940aba0\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
07:20:33 + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10312\n sessionUuid = 72c37736-b77b-482b-8318-bfc3f940aba0\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2780\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
07:20:33 + where getEventContext = <omero.gateway._BlitzGateway object at 0x7f98e092f940>.getEventContext
07:20:33 + where <omero.gateway._BlitzGateway object at 0x7f98e092f940> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f98aa47edc0>.gateway
07:20:33 FAILED test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback - assert 0 > 0
07:20:33 + where 0 = len([])
07:20:33 + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
07:20:33 FAILED test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts - assert 6201 in []
07:20:33 FAILED test/integration/tablestest/test_service.py::TestTables::test2098 - AttributeError: type object 'path' has no attribute 'path'
07:20:33 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile - AttributeError: 'TestTables' object has no attribute 'unique_dir'
07:20:33 FAILED test/integration/tablestest/test_service.py::TestTables::testReadEqual - assert [1] == [1, 2, 3, 4, 5]
07:20:33 Right contains 4 more items, first extra item: 2
07:20:33 Full diff:
07:20:33 [
07:20:33 1,
07:20:33 - 2,
07:20:33 - 3,
07:20:33 - 4,
07:20:33 - 5,
07:20:33 ]
07:20:33 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange - assert [4] == [-1, 0, 1, 2, 3, 4]
07:20:33 At index 0 diff: 4 != -1
07:20:33 Right contains 5 more items, first extra item: 0
07:20:33 Full diff:
07:20:33 [
07:20:33 - -1,
07:20:33 - 0,
07:20:33 - 1,
07:20:33 - 2,
07:20:33 - 3,
07:20:33 4,
07:20:33 ]
07:20:33 FAILED test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset - omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
07:20:33 at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.changePasswordWithOldPassword(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
07:20:33 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.changePasswordWithOldPassword_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
07:20:33 at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 message = Old password is invalid
07:20:33 }
07:20:33 FAILED test/integration/test_admin.py::TestAdmin::test9193 - omero.ValidationException: exception ::omero::ValidationException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
07:20:33 at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor639.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor639.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy98.removeGroups(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3281.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3280.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy99.removeGroups_async(Unknown Source)
07:20:33 at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
07:20:33 at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
07:20:33 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ValidationException
07:20:33 message = experimenter cannot be a member of only the 'user' group, a different default group is also required
07:20:33 }
07:20:33 FAILED test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 - omero.OptimisticLockException: exception ::omero::OptimisticLockException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124713 to ome.model.meta.Event:Id_124712
07:20:33 You may need to reload the object before continuing.
07:20:33 at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
07:20:33 at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
07:20:33 at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
07:20:33 at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
07:20:33 at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
07:20:33 at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
07:20:33 at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
07:20:33 at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
07:20:33 at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
07:20:33 at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
07:20:33 at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
07:20:33 at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
07:20:33 at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.OptimisticLockException
07:20:33 message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124713 to ome.model.meta.Event:Id_124712
07:20:33 You may need to reload the object before continuing.
07:20:33 backOff = 0
07:20:33 }
07:20:33 FAILED test/integration/test_ishare.py::TestIShare::test1172 - assert 0 == 1
07:20:33 + where 0 = len([])
07:20:33 FAILED test/integration/test_itimeline.py::TestITimeline::test1225 - assert 6 == 10
07:20:33 + where 6 = len({1908, 1944, 1995, 9450, 13072, 41480})
07:20:33 FAILED test/integration/test_permissions.py::TestPermissions::test3136 - AssertionError: elapsed1=0.01662445068359375, elapsed2=0.014768123626708984
07:20:33 assert 0.01662445068359375 < (0.1 * 0.014768123626708984)
07:20:33 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit - omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:20:33 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:20:33 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:20:33 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 }
07:20:33 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink - omero.ApiUsageException: exception ::omero::ApiUsageException
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 at ome.model.internal.Permissions.<init>(Permissions.java:164)
07:20:33 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
07:20:33 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
07:20:33 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ApiUsageException
07:20:33 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
07:20:33 }
07:20:33 FAILED test/integration/test_permissions.py::TestPermissions::testSaveBadLink - omero.SecurityViolation: exception ::omero::SecurityViolation
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:20:33 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
07:20:33 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:20:33 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:20:33 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:20:33 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:20:33 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
07:20:33 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
07:20:33 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
07:20:33 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
07:20:33 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
07:20:33 at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
07:20:33 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
07:20:33 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
07:20:33 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
07:20:33 at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
07:20:33 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
07:20:33 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
07:20:33 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
07:20:33 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
07:20:33 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
07:20:33 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
07:20:33 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
07:20:33 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
07:20:33 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
07:20:33 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor572.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy100.saveAndReturnObject(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor655.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor654.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy101.saveAndReturnObject_async(Unknown Source)
07:20:33 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
07:20:33 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
07:20:33 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.SecurityViolation
07:20:33 message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41635 to ome.model.meta.ExperimenterGroup:Id_3678
07:20:33 }
07:20:33 FAILED test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser - Ice.UnknownException: exception ::Ice::UnknownException
07:20:33 {
07:20:33 unknown = ome.conditions.SecurityViolation: User 4735 is not an admin and so cannot set uid to 0
07:20:33 at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
07:20:33 at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
07:20:33 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
07:20:33 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
07:20:33 at ome.services.util.Executor$Impl.execute(Executor.java:447)
07:20:33 at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
07:20:33 at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
07:20:33 at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
07:20:33 at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
07:20:33 at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
07:20:33 at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 }
07:20:33 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic - AssertionError: assert '' != ''
07:20:33 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136104\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession - AssertionError: assert '' != ''
07:20:33 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136184\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save - AssertionError: assert '' != ''
07:20:33 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4736\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3680\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927136223\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 FAILED test/integration/test_rawfilestore.py::TestRFS::testNoWrite - AssertionError: assert '' != ''
07:20:33 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
07:20:33 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4737\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3681\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1729927141677\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
07:20:33 FAILED test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile - Failed: DID NOT RAISE <class 'omero.ResourceError'>
07:20:33 FAILED test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 {
07:20:33 serverStackTrace =
07:20:33 serverExceptionClass =
07:20:33 message = No processor available! [0 response(s)]
07:20:33 processorCount = 0
07:20:33 }
07:20:33 FAILED test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 - AssertionError: upload_time(0.09835362434387207) <= 10 * params_time(0.5749325752258301)!
07:20:33 assert 0.5749325752258301 < (0.09835362434387207 / 10)
07:20:33 FAILED test/integration/test_scripts.py::TestScripts::test3527 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
07:20:33 {
07:20:33 serverStackTrace =
07:20:33 serverExceptionClass =
07:20:33 message = No processor available! [0 response(s)]
07:20:33 processorCount = 0
07:20:33 }
07:20:33 FAILED test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx - omero.ResourceError: exception ::omero::ResourceError
07:20:33 {
07:20:33 serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:20:33 at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
07:20:33 at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
07:20:33 at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3891.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
07:20:33 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
07:20:33 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
07:20:33 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3891.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3896.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
07:20:33 at ome.services.throttling.Callback.run(Callback.java:56)
07:20:33 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
07:20:33 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
07:20:33 at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
07:20:33 at jdk.internal.reflect.GeneratedMethodAccessor3895.invoke(Unknown Source)
07:20:33 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
07:20:33 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
07:20:33 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
07:20:33 at omero.cmd.CallContext.invoke(CallContext.java:85)
07:20:33 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
07:20:33 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
07:20:33 at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
07:20:33 at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
07:20:33 at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
07:20:33 at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
07:20:33 at IceInternal.Incoming.invoke(Incoming.java:221)
07:20:33 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
07:20:33 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
07:20:33 at Ice.ConnectionI.message(ConnectionI.java:1056)
07:20:33 at IceInternal.ThreadPool.run(ThreadPool.java:395)
07:20:33 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
07:20:33 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
07:20:33 at java.base/java.lang.Thread.run(Thread.java:829)
07:20:33 serverExceptionClass = ome.conditions.ResourceError
07:20:33 message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
07:20:33 }
07:20:33 FAILED test/integration/test_tickets2000.py::TestTickets2000::test1184 - AssertionError: Expected the test to complete in < 3 seconds, took: 11.162033
07:20:33 assert 11.162032842636108 < 3.0
07:20:33 ==== 33 failed, 3 passed, 2025 deselected, 13 warnings in 215.82s (0:03:35) ====
07:20:34 !! 10/26/24 08:20:34.078 error: 4 communicators not destroyed during global destruction.
07:20:34 Result: 1
07:20:34
07:20:34 BUILD SUCCESSFUL
07:20:34 Total time: 3 minutes 37 seconds
07:20:34 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/broken broken
07:20:34 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:20:34 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
07:20:34 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
07:20:35
07:20:35 testng-init:
07:20:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:20:35 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:21:03 07:21:02,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:21:03 07:21:02,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - No custom configurators were discovered as a service.
07:21:03 07:21:02,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:21:03 07:21:02,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:21:03 07:21:02,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:21:03 07:21:02,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:21:03 07:21:02,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:21:03 07:21:02,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:21:03 07:21:02,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:21:03 07:21:02,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:21:03 07:21:02,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:21:03 07:21:02,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs multiple times on the classpath.
07:21:03 07:21:02,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:21:03 07:21:02,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1b560eb0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:21:03 07:21:03,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:21:03 07:21:03,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:21:03 07:21:03,196 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:21:03 07:21:03,198 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:21:03 07:21:03,198 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Please move "immediateFlush" property into the enclosing appender.
07:21:03 07:21:03,256 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9e02f84 - Setting the "immediateFlush" property of the enclosing appender to true
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:21:03 07:21:03,257 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:21:03 07:21:03,258 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1e6060f1 - End of configuration.
07:21:03 07:21:03,260 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7e49ded - Registering current configuration as safe fallback point
07:21:03 07:21:03,260 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e40fbb3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 362 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:21:03
07:21:03 lifecycle.test-compile:
07:21:03 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_1834591504.tmp
07:21:03 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:21:03 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
07:21:03 :: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-15a767fb95-ice36-ice36 :: integration :: Sat Oct 26 07:20:34 UTC 2024
07:21:03 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:21:03 :: publishing :: omero#OmeroJava-test
07:21:03 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.jar
07:21:03 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-15a767fb95-ice36-ice36.xml
07:21:04
07:21:04 broken:
07:21:04 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:21:04 07:21:04,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:21:04 07:21:04,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - No custom configurators were discovered as a service.
07:21:04 07:21:04,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:21:04 07:21:04,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:21:04 07:21:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:21:04 07:21:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:21:04 07:21:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:21:04 07:21:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:21:04 07:21:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:21:04 07:21:04,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:21:04 07:21:04,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:21:04 07:21:04,460 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs multiple times on the classpath.
07:21:04 07:21:04,460 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
07:21:04 07:21:04,460 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@10e31a9a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:21:04 07:21:04,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:21:04 07:21:04,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:21:04 07:21:04,910 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:21:04 07:21:04,911 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:21:04 07:21:04,911 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Please move "immediateFlush" property into the enclosing appender.
07:21:04 07:21:04,935 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@131774fe - Setting the "immediateFlush" property of the enclosing appender to true
07:21:04 07:21:04,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:21:04 07:21:04,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:21:04 07:21:04,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:21:04 07:21:04,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:21:04 07:21:04,935 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:21:04 07:21:04,936 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:21:04 07:21:04,936 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@158d2680 - End of configuration.
07:21:04 07:21:04,936 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77847718 - Registering current configuration as safe fallback point
07:21:04 07:21:04,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3febb011 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 478 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:21:11 Oct 26, 2024 7:21:11 AM ome.system.OmeroContext prepareRefresh
07:21:11 INFO: Refreshing ome.system.OmeroContext@9fec931: startup date [Sat Oct 26 07:21:11 UTC 2024]; root of context hierarchy
07:21:11 Oct 26, 2024 7:21:11 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
07:21:11 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
07:22:54 ===============================================
07:22:54 OmeroJava.integration
07:22:54 Total tests run: 43, Passes: 2, Failures: 41, Skips: 0
07:22:54 ===============================================
07:22:55 The tests failed.
07:22:55
07:22:55 BUILD SUCCESSFUL
07:22:55 Total time: 2 minutes 20 seconds
07:22:55 + deactivate
07:22:55 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:22:55 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:22:55 + export PATH
07:22:55 + unset _OLD_VIRTUAL_PATH
07:22:55 + '[' -n '' ']'
07:22:55 + '[' -n /bin/bash -o -n '' ']'
07:22:55 + hash -r
07:22:55 + '[' -n '' ']'
07:22:55 + unset VIRTUAL_ENV
07:22:55 + '[' '!' '' = nondestructive ']'
07:22:55 + unset -f deactivate
07:22:55 Recording test results
07:22:57 [Checks API] No suitable checks publisher found.
07:22:57 Build step 'Publish JUnit test result report' changed build result to UNSTABLE
07:22:57 TestNG Reports Processing: START
07:22:57 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
07:22:57 Saving reports...
07:22:58 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/208/testng/testng-results-1.xml'
07:22:58 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/208/testng/testng-results.xml'
07:22:58 0.038625% of tests failed, which exceeded threshold of 0%. Marking build as UNSTABLE
07:22:58 TestNG Reports Processing: FINISH
07:22:58 Finished: UNSTABLE
![[Jenkins]](/jenkins/static/9e710227/images/svgs/logo.svg){kind=logo}
