12:19:18 Started by upstream project "Trigger" build number 7
12:19:18 originally caused by:
12:19:18 Started by user devspace
12:19:18 Running as SYSTEM
12:19:18 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
12:19:18 [OMERO-training] $ /bin/bash -xe /tmp/jenkins4932405370563112315.sh
12:19:18 + rm -rf /home/omero/workspace/OMERO-training/.venv3
12:19:18 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
12:19:22 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
12:19:22 ++ deactivate nondestructive
12:19:22 ++ '[' -n '' ']'
12:19:22 ++ '[' -n '' ']'
12:19:22 ++ hash -r
12:19:22 ++ '[' -n '' ']'
12:19:22 ++ unset VIRTUAL_ENV
12:19:22 ++ unset VIRTUAL_ENV_PROMPT
12:19:22 ++ '[' '!' nondestructive = nondestructive ']'
12:19:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
12:19:22 ++ export VIRTUAL_ENV
12:19:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:19:22 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:19:22 ++ export PATH
12:19:22 ++ '[' -n '' ']'
12:19:22 ++ '[' -z '' ']'
12:19:22 ++ _OLD_VIRTUAL_PS1=
12:19:22 ++ PS1='(.venv3) '
12:19:22 ++ export PS1
12:19:22 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:19:22 ++ export VIRTUAL_ENV_PROMPT
12:19:22 ++ hash -r
12:19:22 + pip install -U pip setuptools
12:19:22 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:19:22 Collecting pip
12:19:22 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
12:19:22 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
12:19:22 Collecting setuptools
12:19:22 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
12:19:23 Installing collected packages: setuptools, pip
12:19:23 Attempting uninstall: setuptools
12:19:23 Found existing installation: setuptools 65.5.1
12:19:23 Uninstalling setuptools-65.5.1:
12:19:23 Successfully uninstalled setuptools-65.5.1
12:19:23 Attempting uninstall: pip
12:19:23 Found existing installation: pip 22.3.1
12:19:24 Uninstalling pip-22.3.1:
12:19:24 Successfully uninstalled pip-22.3.1
12:19:24 Successfully installed pip-25.3 setuptools-80.9.0
12:19:25 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:19:25 Collecting zeroc-ice==3.6.5
12:19:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:19:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.0 MB/s 0:00:01
12:19:27 Installing collected packages: zeroc-ice
12:19:28 Successfully installed zeroc-ice-3.6.5
12:19:28 + pip install markdown
12:19:28 Collecting markdown
12:19:28 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
12:19:28 Using cached markdown-3.10-py3-none-any.whl (107 kB)
12:19:28 Installing collected packages: markdown
12:19:28 Successfully installed markdown-3.10
12:19:28 + pip install mox3 pytest 'pytest-xdist<2'
12:19:29 Collecting mox3
12:19:29 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
12:19:29 Collecting pytest
12:19:29 Using cached pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB)
12:19:29 Collecting pytest-xdist<2
12:19:29 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
12:19:29 Collecting execnet>=1.1 (from pytest-xdist<2)
12:19:29 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
12:19:29 Collecting pytest-forked (from pytest-xdist<2)
12:19:29 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
12:19:29 Collecting six (from pytest-xdist<2)
12:19:29 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:19:29 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
12:19:29 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
12:19:29 Collecting fixtures>=3.0.0 (from mox3)
12:19:29 Using cached fixtures-4.2.6-py3-none-any.whl.metadata (22 kB)
12:19:29 Collecting iniconfig>=1.0.1 (from pytest)
12:19:29 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
12:19:29 Collecting packaging>=22 (from pytest)
12:19:29 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
12:19:29 Collecting pluggy<2,>=1.5 (from pytest)
12:19:29 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
12:19:29 Collecting pygments>=2.7.2 (from pytest)
12:19:29 Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
12:19:29 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
12:19:29 Collecting py (from pytest-forked->pytest-xdist<2)
12:19:29 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
12:19:29 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
12:19:29 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
12:19:29 Using cached pytest-9.0.2-py3-none-any.whl (374 kB)
12:19:29 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
12:19:29 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
12:19:29 Using cached fixtures-4.2.6-py3-none-any.whl (66 kB)
12:19:29 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
12:19:29 Using cached packaging-25.0-py3-none-any.whl (66 kB)
12:19:29 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
12:19:29 Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB)
12:19:29 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
12:19:29 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
12:19:29 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:19:29 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
12:19:31
12:19:31 Successfully installed execnet-2.1.2 fixtures-4.2.6 iniconfig-2.3.0 mox3-1.1.0 packaging-25.0 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.19.2 pytest-9.0.2 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
12:19:31 + pip install tables
12:19:31 Collecting tables
12:19:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
12:19:31 Collecting numpy>=1.20.0 (from tables)
12:19:31 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
12:19:31 Collecting numexpr>=2.6.2 (from tables)
12:19:31 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:19:31 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
12:19:31 Collecting py-cpuinfo (from tables)
12:19:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:19:32 Collecting blosc2>=2.3.0 (from tables)
12:19:32 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
12:19:32 Collecting typing-extensions>=4.4.0 (from tables)
12:19:32 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
12:19:32 Collecting ndindex (from blosc2>=2.3.0->tables)
12:19:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:19:32 Collecting msgpack (from blosc2>=2.3.0->tables)
12:19:32 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
12:19:32 Collecting platformdirs (from blosc2>=2.3.0->tables)
12:19:32 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
12:19:32 Collecting requests (from blosc2>=2.3.0->tables)
12:19:32 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
12:19:32 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
12:19:32 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
12:19:32 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
12:19:32 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
12:19:32 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
12:19:32 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
12:19:32 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
12:19:32 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
12:19:32 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
12:19:32 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
12:19:32 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:19:32 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:19:32 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
12:19:32 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
12:19:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:19:32 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
12:19:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:19:32 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
12:19:32 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
12:19:32 Using cached idna-3.11-py3-none-any.whl (71 kB)
12:19:32 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
12:19:32 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
12:19:32 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
12:19:36
12:19:36 Successfully installed blosc2-3.12.2 certifi-2025.11.12 charset_normalizer-3.4.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
12:19:36 + pip install jinja2
12:19:36 Collecting jinja2
12:19:36 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:19:36 Collecting MarkupSafe>=2.0 (from jinja2)
12:19:36 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:19:36 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:19:36 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:19:36 Installing collected packages: MarkupSafe, jinja2
12:19:36
12:19:36 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:19:36 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
12:19:36 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 3
12:19:38 Copied 2 artifacts from "OMERO-build" build number 3
12:19:39 Copied 2 artifacts from "OMERO-build-build" build number 6
12:19:39 [OMERO-training] $ /bin/bash -xe /tmp/jenkins15374860268300693579.sh
12:19:39 + source /home/settings.env
12:19:39 ++ OMERO_DB_HOST=pg
12:19:39 ++ OMERO_DB_USER=postgres
12:19:39 ++ OMERO_DB_PASS=
12:19:39 ++ OMERO_ROOT_PASS=omero
12:19:39 ++ OMERO_DATA_DIR=/OMERO
12:19:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:19:39 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
12:19:39 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
12:19:39 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
12:19:39 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
12:19:39 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
12:19:39 ++ ls openmicroscopy-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 + ZIP=openmicroscopy-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 + DIST=openmicroscopy-5.6.3-576-35efecc35f-ice36-b3
12:19:39 + unzip -n openmicroscopy-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 Archive: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.classpath-template
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/Pull_Request_Template.md
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/workflows/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/workflows/docker_build.yml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/workflows/release.yml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/workflows/source_build.yml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.github/workflows/update.yaml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.mailmap
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/.project
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/CMakeLists.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/CONTRIBUTING.md
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/Dockerfile
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/LICENSE.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/README.md
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/SUPPORT.md
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/build.bat
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/build.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/build.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/.classpath
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/.project
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/excludebugs.xml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/global.xml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/hibernate.xml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/lifecycle.xml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/version.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/scripts/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/scripts/parse_version
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/scripts/source-archive.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/build.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/README.md
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/build.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/plugins/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/plugins/robot.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/robot.template
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/annotation.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/login.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/thumbs.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/tree.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/web/webadmin.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/resources/well_sample_posXY.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/robot_setup.sh
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/testcases/web/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tests/ui/testcases/web/annotate_test.robot
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/CMakeLists.txt
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/cmake/FindIce.cmake
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/cmake/GTest.cmake
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/cmake/Version.cmake
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/README
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/src/README.h
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/utils/chgrp.cpp
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroFS/test/drivers.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroFS/test/integration/
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroFS/test/integration/__init__.py
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroFS/test/records/first.txt
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/.classpath-template
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/AbstractServerImportTest.java
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/UpgradeCheckTest.java
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chgrp/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chgrp/AnnotationMoveTest.java
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithAcquisitionDataTest.java
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithRoiFromOtherUserTest.java
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chmod/PermissionsTest.java
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chown/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/delete/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/gateway/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/thumbnail/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/bin/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/bin/omero
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12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/build.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/createSession.py
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/load.omero
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/projection_1.py
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/submit.omero
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/examples/upload.omero
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/ice.config
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/ivy.xml
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/manualtests/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/manualtests/README.txt
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/manualtests/populate_roi_test.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/setup.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/__init__.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/conftest.py
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/__init__.py
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/client_ctors.cfg
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12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/clitest/__init__.py
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/scriptsharness/
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/scriptstest/
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
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12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/OMERO3A__3.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/OMERO3__5.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__5/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__5/OMERO3A__4.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__6/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__6/OMERO3A__5.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__7/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__7/OMERO3A__6.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__8/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__8/OMERO3A__6.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__9/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__9/OMERO3A__8.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__4/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__4/OMERO3__1.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__5/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__5/OMERO3__4.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__6/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__6/OMERO3__5.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__7/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__7/OMERO3__6.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.1__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.1__0/OMERO4__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4__0/OMERO3A__11.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:19:39 creating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-footer.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-header.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/schema.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/views.sql
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/test.xml
12:19:39 inflating: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/update_dependencies.sh
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/antlib/resources/gitversion.xml
12:19:39 extracting: openmicroscopy-5.6.3-576-35efecc35f-ice36-b3/components/tools/OmeroCpp/cmake/GitVersion.cmake
12:19:39 + rm -f openmicroscopy-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-576-35efecc35f-ice36-b3 /home/omero/workspace/OMERO-training/openmicroscopy
12:19:39 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
12:19:39 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
12:19:39 ++ ls OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 + ZIP=OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 + DIST=OMERO.server-5.6.3-576-35efecc35f-ice36-b3
12:19:39 + unzip -n OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 Archive: OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/grid/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/profiles/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/error/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/janelia/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/matplotlib/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/ncsa_paledit/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/seaborn/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/wcif/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/analysis_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/annotation_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/export_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/figure_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/import_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/util_scripts/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/server/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/share/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/share/licenses/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/misc/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__1/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__10/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__11/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__2/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__3/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__5/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__6/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__7/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__8/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__9/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__4/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__5/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__6/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__7/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.1__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/var/
12:19:39 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/var/tmp/
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/LICENSE.txt
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/backup.cfg
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/mail-senders.example
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/mail-server.example
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/build.properties
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/env.bat
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/env.sh
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/hibernate.properties
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/ice.config
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-cli.xml
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-indexing-cli.xml
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-indexing.xml
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback.xml
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/mime.types
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/node1.cfg
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/node2.cfg
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/omero.properties
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/profiles/psql
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/rollover.cfg
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/Windows.cfg
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/error/maintainance.html
12:19:39 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/README
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12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__11/OMERO3A__10.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__11/OMERO3A__5.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__2/OMERO3A__1.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__3/OMERO3A__2.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__3/OMERO3__5.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/OMERO3A__3.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/OMERO3__5.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__5/OMERO3A__4.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__6/OMERO3A__5.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__7/OMERO3A__6.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__8/OMERO3A__6.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__9/OMERO3A__8.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__4/OMERO3__1.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__5/OMERO3__4.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__6/OMERO3__5.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__7/OMERO3__6.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.1__0/OMERO4__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4__0/OMERO3A__11.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-footer.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-header.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/schema.sql
12:19:41 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/views.sql
12:19:41 + rm -f OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:19:41 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-576-35efecc35f-ice36-b3 /home/omero/workspace/OMERO-training/OMERO.server
12:19:41 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
12:19:41 ++ deactivate nondestructive
12:19:41 ++ '[' -n '' ']'
12:19:41 ++ '[' -n '' ']'
12:19:41 ++ hash -r
12:19:41 ++ '[' -n '' ']'
12:19:41 ++ unset VIRTUAL_ENV
12:19:41 ++ unset VIRTUAL_ENV_PROMPT
12:19:41 ++ '[' '!' nondestructive = nondestructive ']'
12:19:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
12:19:41 ++ export VIRTUAL_ENV
12:19:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:19:41 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:19:41 ++ export PATH
12:19:41 ++ '[' -n '' ']'
12:19:41 ++ '[' -z '' ']'
12:19:41 ++ _OLD_VIRTUAL_PS1=
12:19:41 ++ PS1='(.venv3) '
12:19:41 ++ export PS1
12:19:41 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:19:41 ++ export VIRTUAL_ENV_PROMPT
12:19:41 ++ hash -r
12:19:41 + for x in *.gz
12:19:41 + pip install omero_dropbox-5.7.1.dev0.tar.gz
12:19:41 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:19:41 Installing build dependencies: started
12:19:42 Installing build dependencies: finished with status 'done'
12:19:42 Getting requirements to build wheel: started
12:19:43 Getting requirements to build wheel: finished with status 'done'
12:19:43 Preparing metadata (pyproject.toml): started
12:19:43 Preparing metadata (pyproject.toml): finished with status 'done'
12:19:43 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
12:19:43 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
12:19:43 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
12:19:43 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:19:43 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
12:19:43 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:19:43 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
12:19:43 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
12:19:43 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
12:19:43 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
12:19:43 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:19:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:19:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
12:19:43 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
12:19:43 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:19:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
12:19:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
12:19:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
12:19:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
12:19:43 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
12:19:43 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
12:19:43 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:19:43 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:19:43 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:19:43 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:19:43 Building wheels for collected packages: omero-dropbox
12:19:43 Building wheel for omero-dropbox (pyproject.toml): started
12:19:44 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:19:44 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=ce374e86e83376fd6284ad7f4e6f1d237360812ee4d33035b839a7fde95a5cdb
12:19:44 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
12:19:44 Successfully built omero-dropbox
12:19:44 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
12:19:46
12:19:46 Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
12:19:46 + for x in *.gz
12:19:46 + pip install omero_marshal-0.9.2.dev0.tar.gz
12:19:47 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:19:47 Installing build dependencies: started
12:19:48 Installing build dependencies: finished with status 'done'
12:19:48 Getting requirements to build wheel: started
12:19:48 Getting requirements to build wheel: finished with status 'done'
12:19:48 Preparing metadata (pyproject.toml): started
12:19:48 Preparing metadata (pyproject.toml): finished with status 'done'
12:19:48 Building wheels for collected packages: omero_marshal
12:19:48 Building wheel for omero_marshal (pyproject.toml): started
12:19:49 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:19:49 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=0c70b8861286446c292b4be3f6d067cdf8e78a2d50470073332f7fa6b7191137
12:19:49 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
12:19:49 Successfully built omero_marshal
12:19:49 Installing collected packages: omero_marshal
12:19:49 Successfully installed omero_marshal-0.9.2.dev0
12:19:49 + for x in *.gz
12:19:49 + pip install omero_py-5.22.0.dev0.tar.gz
12:19:49 Processing ./omero_py-5.22.0.dev0.tar.gz
12:19:49 Installing build dependencies: started
12:19:50 Installing build dependencies: finished with status 'done'
12:19:50 Getting requirements to build wheel: started
12:19:50 Getting requirements to build wheel: finished with status 'done'
12:19:50 Preparing metadata (pyproject.toml): started
12:19:51 Preparing metadata (pyproject.toml): finished with status 'done'
12:19:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
12:19:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
12:19:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
12:19:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
12:19:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
12:19:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
12:19:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
12:19:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
12:19:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
12:19:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
12:19:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
12:19:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
12:19:51 Building wheels for collected packages: omero-py
12:19:51 Building wheel for omero-py (pyproject.toml): started
12:19:52 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:19:52 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=af2b2d893261cc8a9c22a4ac7a447a5430bc5dc1efdecb61d7749acb93f67d04
12:19:52 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
12:19:52 Successfully built omero-py
12:19:52 Installing collected packages: omero-py
12:19:52 Attempting uninstall: omero-py
12:19:52 Found existing installation: omero-py 5.21.3
12:19:52 Uninstalling omero-py-5.21.3:
12:19:52 Successfully uninstalled omero-py-5.21.3
12:19:54 Successfully installed omero-py-5.22.0.dev0
12:19:54 + for x in *.gz
12:19:54 + pip install omero_scripts-5.9.2.dev0.tar.gz
12:19:54 Processing ./omero_scripts-5.9.2.dev0.tar.gz
12:19:54 Installing build dependencies: started
12:19:55 Installing build dependencies: finished with status 'done'
12:19:55 Getting requirements to build wheel: started
12:19:55 Getting requirements to build wheel: finished with status 'done'
12:19:55 Preparing metadata (pyproject.toml): started
12:19:56 Preparing metadata (pyproject.toml): finished with status 'done'
12:19:56 Building wheels for collected packages: omero-scripts
12:19:56 Building wheel for omero-scripts (pyproject.toml): started
12:19:56 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:19:56 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=c9d4456008f495874780e3ea10cb39d1c300f9407330017cb01bea50f9937141
12:19:56 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
12:19:56 Successfully built omero-scripts
12:19:56 Installing collected packages: omero-scripts
12:19:56 Successfully installed omero-scripts-5.9.2.dev0
12:19:56 + for x in *.gz
12:19:56 + pip install omero_web-5.30.1.dev0.tar.gz
12:19:56 Processing ./omero_web-5.30.1.dev0.tar.gz
12:19:57 Installing build dependencies: started
12:19:58 Installing build dependencies: finished with status 'done'
12:19:58 Getting requirements to build wheel: started
12:19:58 Getting requirements to build wheel: finished with status 'done'
12:19:58 Preparing metadata (pyproject.toml): started
12:19:58 Preparing metadata (pyproject.toml): finished with status 'done'
12:19:58 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
12:19:58 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
12:19:58 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
12:19:58 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
12:19:58 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
12:19:58 Collecting django-pipeline (from omero-web==5.30.1.dev0)
12:19:58 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:19:58 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
12:19:58 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:19:58 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
12:19:58 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
12:19:58 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
12:19:58 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
12:19:58 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
12:19:58 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
12:19:58 Collecting pytz (from omero-web==5.30.1.dev0)
12:19:58 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
12:19:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
12:19:58 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
12:19:59 Collecting importlib-resources (from omero-web==5.30.1.dev0)
12:19:59 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
12:19:59 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
12:19:59 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
12:19:59 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
12:19:59 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:19:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
12:19:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
12:19:59 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
12:19:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
12:19:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
12:19:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
12:19:59 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
12:19:59 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
12:19:59 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
12:19:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
12:19:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
12:19:59 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
12:19:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
12:19:59 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:19:59 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
12:19:59 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
12:19:59 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
12:19:59 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
12:19:59 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:19:59 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
12:19:59 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:19:59 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
12:19:59 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
12:19:59 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
12:19:59 Building wheels for collected packages: omero-web
12:19:59 Building wheel for omero-web (pyproject.toml): started
12:20:00 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:20:00 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=fa48f157d61ec22721532de6e171483cf412bf75bb2633a91d25ae36916f7150
12:20:00 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
12:20:00 Successfully built omero-web
12:20:00 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:20:03
12:20:03 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
12:20:03 + cd /home/omero/workspace/OMERO-training/OMERO.server
12:20:03 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
12:20:03 + HOSTNAME=bad8002a5571
12:20:03 + PORT=4064
12:20:03 + WEBHOST=http://nginx/web
12:20:03 + SERVER_NAME=omero
12:20:03 + ROOT_PASSWORD=omero
12:20:03 + GROUP_NAME=training_group
12:20:03 + GROUP_NAME_2=training_group-2
12:20:03 + USER_NAME=training_user
12:20:03 + USER_NAME_2=training_user-2
12:20:03 + LIGHTADMIN_USER_NAME=ladmin_user
12:20:03 + USER_PASSWORD=ome
12:20:03 + CONFIG_FILENAME=training_ice.config
12:20:03 + omero login root@bad8002a5571:4064 -w omero
12:20:04 Created session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:04 + omero group add training_group --type read-only --ignore-existing
12:20:05 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:05 Group exists: training_group (id=3)
12:20:05 + omero group add training_group-2 --type read-only --ignore-existing
12:20:05 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:05 Group exists: training_group-2 (id=4)
12:20:06 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
12:20:06 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:06 User exists: training_user (id=2)
12:20:06 + omero user joingroup --name training_user --group-name training_group training_group-2
12:20:07 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:07 2 is already in group 3
12:20:07 2 is already in group 4
12:20:07 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
12:20:08 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:08 User exists: training_user-2 (id=3)
12:20:08 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
12:20:09 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:09 3 is already in group 3
12:20:09 3 is already in group 4
12:20:09 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
12:20:10 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:10 User exists: ladmin_user (id=4)
12:20:10 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
12:20:11 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:11 4 is already in group 3
12:20:11 4 is already in group 4
12:20:11 ++ omero user info ladmin_user --style plain
12:20:11 ++ cut -d, -f1
12:20:12 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:12 + id=4
12:20:12 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
12:20:13 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
12:20:13 Experimenter:4
12:20:13 + omero logout
12:20:14 + touch test.fake
12:20:14 + omero login training_user@bad8002a5571:4064 -w ome -g training_group
12:20:15 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:15 + nProjects=1
12:20:15 + nDatasets=2
12:20:15 + echo 'Creating projects and datasets'
12:20:15 Creating projects and datasets
12:20:15 + (( i=1 ))
12:20:15 + (( i<=1 ))
12:20:15 ++ omero obj new Project 'name=Project 1'
12:20:16 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:16 + project=Project:51
12:20:16 + (( j=1 ))
12:20:16 + (( j<=2 ))
12:20:16 ++ omero obj new Dataset 'name=Dataset 1-1'
12:20:17 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:17 + dataset=Dataset:51
12:20:17 + omero obj new ProjectDatasetLink parent=Project:51 child=Dataset:51
12:20:18 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:18 ProjectDatasetLink:51
12:20:18 + echo 'Importing image into dataset'
12:20:18 Importing image into dataset
12:20:18 + omero import -d Dataset:51 test.fake --debug ERROR
12:20:19 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:19 2025-12-19 12:20:19,613 241 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
12:20:19 2025-12-19 12:20:19,628 256 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: c198fef2fdbc3237b80ab3ce091ca8b34a555d4c date: 19 December 2025
12:20:23 Image:551
12:20:23 Other imported objects:
12:20:23 Fileset:51
12:20:23
12:20:23 ==> Summary
12:20:23 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.862
12:20:23 + (( j++ ))
12:20:23 + (( j<=2 ))
12:20:23 ++ omero obj new Dataset 'name=Dataset 1-2'
12:20:24 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:24 + dataset=Dataset:52
12:20:24 + omero obj new ProjectDatasetLink parent=Project:51 child=Dataset:52
12:20:25 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:25 ProjectDatasetLink:52
12:20:25 + echo 'Importing image into dataset'
12:20:25 Importing image into dataset
12:20:25 + omero import -d Dataset:52 test.fake --debug ERROR
12:20:26 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:27 2025-12-19 12:20:27,118 261 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
12:20:27 2025-12-19 12:20:27,133 276 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: c198fef2fdbc3237b80ab3ce091ca8b34a555d4c date: 19 December 2025
12:20:30 Image:552
12:20:30 Other imported objects:
12:20:30 Fileset:52
12:20:30
12:20:30 ==> Summary
12:20:30 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.912
12:20:30 + (( j++ ))
12:20:30 + (( j<=2 ))
12:20:30 + (( i++ ))
12:20:30 + (( i<=1 ))
12:20:30 + (( j=1 ))
12:20:30 + (( j<=2 ))
12:20:30 + omero obj new Dataset 'name=Orphaned dataset 1'
12:20:31 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:31 Dataset:53
12:20:31 + (( j++ ))
12:20:31 + (( j<=2 ))
12:20:31 + omero obj new Dataset 'name=Orphaned dataset 2'
12:20:32 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:32 Dataset:54
12:20:32 + (( j++ ))
12:20:32 + (( j<=2 ))
12:20:32 + echo 'Importing image file'
12:20:32 Importing image file
12:20:32 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:20:32 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:20:37 ++ sed -n -e 's/^Image://p' image_import.log
12:20:37 + imageid=553
12:20:37 ++ omero obj new MapAnnotation
12:20:38 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:38 + MAP=MapAnnotation:51
12:20:38 + omero obj map-set MapAnnotation:51 mapValue testkey testvalue
12:20:39 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:39 MapAnnotation:51
12:20:39 + omero obj new ImageAnnotationLink parent=Image:553 child=MapAnnotation:51
12:20:40 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:40 ImageAnnotationLink:51
12:20:40 ++ omero obj new Screen name=Screen
12:20:41 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:41 + screen=Screen:51
12:20:41 ++ omero obj new Plate name=Plate
12:20:42 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:42 + plate=Plate:51
12:20:42 + omero obj new ScreenPlateLink parent=Screen:51 child=Plate:51
12:20:43 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:43 ScreenPlateLink:51
12:20:43 + echo 'Importing SPW file'
12:20:43 Importing SPW file
12:20:43 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
12:20:43 + omero import -r Screen:51 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
12:20:48 ++ sed -n -e 's/^Plate://p' plate_import.log
12:20:48 + plateid=52
12:20:48 + omero logout
12:20:49 + omero login training_user-2@bad8002a5571:4064 -w ome -g training_group
12:20:50 Created session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:50 + omero obj new Project 'name=Project 0'
12:20:51 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:51 Project:52
12:20:51 + omero obj new Dataset 'name=Dataset 0'
12:20:52 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:52 Dataset:55
12:20:52 + omero import test.fake --debug ERROR
12:20:53 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:54 2025-12-19 12:20:54,374 282 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
12:20:54 2025-12-19 12:20:54,389 297 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: c198fef2fdbc3237b80ab3ce091ca8b34a555d4c date: 19 December 2025
12:20:56 Image:557
12:20:56 Other imported objects:
12:20:56 Fileset:55
12:20:56
12:20:56 ==> Summary
12:20:56 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.744
12:20:56 + omero obj new Screen name=Screen
12:20:57 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:57 Screen:52
12:20:57 + omero obj new Plate name=Plate
12:20:58 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
12:20:58 Plate:53
12:20:58 + omero login training_user@bad8002a5571:4064 -w ome -g training_group-2
12:20:59 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:20:59 + omero obj new Project 'name=Project 0'
12:21:00 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:21:00 Project:53
12:21:00 + omero obj new Dataset 'name=Dataset 0'
12:21:01 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:21:01 Dataset:56
12:21:01 + omero import test.fake --debug ERROR
12:21:02 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:21:02 2025-12-19 12:21:02,775 302 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
12:21:02 2025-12-19 12:21:02,791 318 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: c198fef2fdbc3237b80ab3ce091ca8b34a555d4c date: 19 December 2025
12:21:04 Image:558
12:21:04 Other imported objects:
12:21:04 Fileset:56
12:21:04
12:21:04 ==> Summary
12:21:04 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.810
12:21:04 + omero obj new Screen name=Screen
12:21:05 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:21:05 Screen:53
12:21:05 + omero obj new Plate name=Plate
12:21:06 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
12:21:06 Plate:54
12:21:06 + omero logout
12:21:07 + echo omero.host=bad8002a5571
12:21:07 + echo omero.port=4064
12:21:07 + echo omero.webhost=http://nginx/web
12:21:07 + echo omero.servername=omero
12:21:07 + echo omero.user=training_user
12:21:07 + echo omero.pass=ome
12:21:07 + echo omero.group=training_group
12:21:07 + echo omero.projectid=51
12:21:07 + echo omero.datasetid=52
12:21:07 + echo omero.imageid=553
12:21:07 + echo omero.plateid=52
12:21:07 + echo omero.screenid=51
12:21:07 + echo omero.group2=training_group-2
12:21:07 + echo omero.ladmin=ladmin_user
12:21:07 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:21:07 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
12:21:07 + omero sessions clear
12:21:08 1 session(s) cleared
12:21:08 !! 12/19/25 12:21:08.630 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
12:21:08 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
12:21:08 + pip install --upgrade requests
12:21:08 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
12:21:09 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
12:21:09 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
12:21:09 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
12:21:09 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.11.12)
12:21:09 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
12:21:17 Running training suite
12:21:17 created 20 shapes
12:21:17 retrieved 20 shapes in 4 batches
12:21:17 Current user:
12:21:17 ID: 2
12:21:17 Username: training_user
12:21:17 Full Name: training_user training_user
12:21:17 Is Admin: False
12:21:17 []
12:21:17 Member of:
12:21:17 ID: 3 Name: training_group
12:21:17 ID: 4 Name: training_group-2
12:21:17 Current group: training_group
12:21:17 Group owners:
12:21:17 Group members:
12:21:17 ID: 2 UserName: training_user Name: training_user training_user
12:21:17 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
12:21:17 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
12:21:17 Owner of:
12:21:17 Admins:
12:21:17 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
12:21:17 ID: 0 UserName: root Name: root root
12:21:17 Created new Image:559 Name:"numpy image"
12:21:17 newPlane for z,t: 0 0 uint8 0 127
12:21:17 newPlane for z,t: 0 1 uint8 0 127
12:21:17 newPlane for z,t: 0 2 uint8 0 127
12:21:17 newPlane for z,t: 0 3 uint8 0 127
12:21:17 newPlane for z,t: 0 4 uint8 0 127
12:21:17 newPlane for z,t: 0 5 uint8 0 127
12:21:17 newPlane for z,t: 0 6 uint8 0 127
12:21:17 newPlane for z,t: 0 7 uint8 0 127
12:21:17 newPlane for z,t: 0 8 uint8 0 127
12:21:17 newPlane for z,t: 0 9 uint8 0 127
12:21:17 newPlane for z,t: 1 0 uint8 0 127
12:21:17 newPlane for z,t: 1 1 uint8 0 127
12:21:17 newPlane for z,t: 1 2 uint8 0 127
12:21:17 newPlane for z,t: 1 3 uint8 0 127
12:21:17 newPlane for z,t: 1 4 uint8 0 127
12:21:17 newPlane for z,t: 1 5 uint8 0 127
12:21:17 newPlane for z,t: 1 6 uint8 0 127
12:21:17 newPlane for z,t: 1 7 uint8 0 127
12:21:17 newPlane for z,t: 1 8 uint8 0 127
12:21:17 newPlane for z,t: 1 9 uint8 0 127
12:21:17 newPlane for z,t: 2 0 uint8 0 127
12:21:17 newPlane for z,t: 2 1 uint8 0 127
12:21:17 newPlane for z,t: 2 2 uint8 0 127
12:21:17 newPlane for z,t: 2 3 uint8 0 127
12:21:17 newPlane for z,t: 2 4 uint8 0 127
12:21:17 newPlane for z,t: 2 5 uint8 0 127
12:21:17 newPlane for z,t: 2 6 uint8 0 127
12:21:17 newPlane for z,t: 2 7 uint8 0 127
12:21:17 newPlane for z,t: 2 8 uint8 0 127
12:21:17 newPlane for z,t: 2 9 uint8 0 127
12:21:17 newPlane for z,t: 3 0 uint8 0 127
12:21:17 newPlane for z,t: 3 1 uint8 0 127
12:21:17 newPlane for z,t: 3 2 uint8 0 127
12:21:17 newPlane for z,t: 3 3 uint8 0 127
12:21:17 newPlane for z,t: 3 4 uint8 0 127
12:21:17 newPlane for z,t: 3 5 uint8 0 127
12:21:17 newPlane for z,t: 3 6 uint8 0 127
12:21:17 newPlane for z,t: 3 7 uint8 0 127
12:21:17 newPlane for z,t: 3 8 uint8 0 127
12:21:17 newPlane for z,t: 3 9 uint8 0 127
12:21:17 newPlane for z,t: 4 0 uint8 0 127
12:21:17 newPlane for z,t: 4 1 uint8 0 127
12:21:17 newPlane for z,t: 4 2 uint8 0 127
12:21:17 newPlane for z,t: 4 3 uint8 0 127
12:21:17 newPlane for z,t: 4 4 uint8 0 127
12:21:17 newPlane for z,t: 4 5 uint8 0 127
12:21:17 newPlane for z,t: 4 6 uint8 0 127
12:21:17 newPlane for z,t: 4 7 uint8 0 127
12:21:17 newPlane for z,t: 4 8 uint8 0 127
12:21:17 newPlane for z,t: 4 9 uint8 0 127
12:21:17 Deleting, please wait.
12:21:17 Error? False
12:21:17 553 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:17 training_user_2/Blitz-0-Ice.ThreadPool.Server-10/2025-12/19/12-20-35.732/ test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:17 1
12:21:17 training_user_2/Blitz-0-Ice.ThreadPool.Server-10/2025-12/19/12-20-35.732/ test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:17 Current group: training_group
12:21:17 Permissions: READ-ONLY (rwr---)
12:21:17 Project 0 Owner: training_user-2 training_user-2
12:21:17 Project 0 Owner: training_user-2 training_user-2
12:21:17 Project 0 Owner: training_user-2 training_user-2
12:21:17 Project 1 Owner: training_user training_user
12:21:17 Project 1 Owner: training_user training_user
12:21:17 Project 1 Owner: training_user training_user
12:21:17 Image: <_ImageWrapper id=553>
12:21:17 Image: <_ImageWrapper id=553> Group: training_group 3
12:21:17 Image: <_ImageWrapper id=553> Channel: 0
12:21:17 Channel: 1
12:21:17 Channel: 2
12:21:17
12:21:17
12:21:17 original_metadata
12:21:17 global_metadata
12:21:17 series_metadata
12:21:17
12:21:17 Plane at zct: 0 0 0
12:21:17 [[ 0 0 0 ... 253 254 255]
12:21:17 [ 0 0 0 ... 253 254 255]
12:21:17 [ 0 0 0 ... 253 254 255]
12:21:17 ...
12:21:17 [ 0 1 2 ... 253 254 255]
12:21:17 [ 0 1 2 ... 253 254 255]
12:21:17 [ 0 1 2 ... 253 254 255]]
12:21:17 shape: (512, 512)
12:21:17 min: 0 max: 255 pixel type: uint8
12:21:17
12:21:17 Z stack of tiles:
12:21:17 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:21:17 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:21:17 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:21:17 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:21:17 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:21:17
12:21:17 Hyper stack of planes:
12:21:17 plane zct: (2, 0, 0) min: 0 max: 255
12:21:17 plane zct: (2, 0, 1) min: 0 max: 255
12:21:17 plane zct: (2, 0, 2) min: 0 max: 255
12:21:17 plane zct: (2, 0, 3) min: 0 max: 255
12:21:17 plane zct: (2, 0, 4) min: 0 max: 255
12:21:17 plane zct: (2, 0, 5) min: 0 max: 255
12:21:17 plane zct: (2, 0, 6) min: 0 max: 255
12:21:17 plane zct: (2, 0, 7) min: 0 max: 255
12:21:17 plane zct: (2, 0, 8) min: 0 max: 255
12:21:17 plane zct: (2, 0, 9) min: 0 max: 255
12:21:17 plane zct: (2, 1, 0) min: 0 max: 255
12:21:17 plane zct: (2, 1, 1) min: 0 max: 255
12:21:17 plane zct: (2, 1, 2) min: 0 max: 255
12:21:17 plane zct: (2, 1, 3) min: 0 max: 255
12:21:17 plane zct: (2, 1, 4) min: 0 max: 255
12:21:17 plane zct: (2, 1, 5) min: 0 max: 255
12:21:17 plane zct: (2, 1, 6) min: 0 max: 255
12:21:17 plane zct: (2, 1, 7) min: 0 max: 255
12:21:17 plane zct: (2, 1, 8) min: 0 max: 255
12:21:17 plane zct: (2, 1, 9) min: 0 max: 255
12:21:17 plane zct: (2, 2, 0) min: 0 max: 255
12:21:17 plane zct: (2, 2, 1) min: 0 max: 255
12:21:17 plane zct: (2, 2, 2) min: 0 max: 255
12:21:17 plane zct: (2, 2, 3) min: 0 max: 255
12:21:17 plane zct: (2, 2, 4) min: 0 max: 255
12:21:17 plane zct: (2, 2, 5) min: 0 max: 255
12:21:17 plane zct: (2, 2, 6) min: 0 max: 255
12:21:17 plane zct: (2, 2, 7) min: 0 max: 255
12:21:17 plane zct: (2, 2, 8) min: 0 max: 255
12:21:17 plane zct: (2, 2, 9) min: 0 max: 255
12:21:17 plane zct: (3, 0, 0) min: 0 max: 255
12:21:17 plane zct: (3, 0, 1) min: 0 max: 255
12:21:17 plane zct: (3, 0, 2) min: 0 max: 255
12:21:17 plane zct: (3, 0, 3) min: 0 max: 255
12:21:17 plane zct: (3, 0, 4) min: 0 max: 255
12:21:17 plane zct: (3, 0, 5) min: 0 max: 255
12:21:17 plane zct: (3, 0, 6) min: 0 max: 255
12:21:17 plane zct: (3, 0, 7) min: 0 max: 255
12:21:17 plane zct: (3, 0, 8) min: 0 max: 255
12:21:17 plane zct: (3, 0, 9) min: 0 max: 255
12:21:17 plane zct: (3, 1, 0) min: 0 max: 255
12:21:17 plane zct: (3, 1, 1) min: 0 max: 255
12:21:17 plane zct: (3, 1, 2) min: 0 max: 255
12:21:17 plane zct: (3, 1, 3) min: 0 max: 255
12:21:17 plane zct: (3, 1, 4) min: 0 max: 255
12:21:17 plane zct: (3, 1, 5) min: 0 max: 255
12:21:17 plane zct: (3, 1, 6) min: 0 max: 255
12:21:17 plane zct: (3, 1, 7) min: 0 max: 255
12:21:17 plane zct: (3, 1, 8) min: 0 max: 255
12:21:17 plane zct: (3, 1, 9) min: 0 max: 255
12:21:17 plane zct: (3, 2, 0) min: 0 max: 255
12:21:17 plane zct: (3, 2, 1) min: 0 max: 255
12:21:17 plane zct: (3, 2, 2) min: 0 max: 255
12:21:17 plane zct: (3, 2, 3) min: 0 max: 255
12:21:17 plane zct: (3, 2, 4) min: 0 max: 255
12:21:17 plane zct: (3, 2, 5) min: 0 max: 255
12:21:17 plane zct: (3, 2, 6) min: 0 max: 255
12:21:17 plane zct: (3, 2, 7) min: 0 max: 255
12:21:17 plane zct: (3, 2, 8) min: 0 max: 255
12:21:17 plane zct: (3, 2, 9) min: 0 max: 255
12:21:17 plane zct: (4, 0, 0) min: 0 max: 255
12:21:17 plane zct: (4, 0, 1) min: 0 max: 255
12:21:17 plane zct: (4, 0, 2) min: 0 max: 255
12:21:17 plane zct: (4, 0, 3) min: 0 max: 255
12:21:17 plane zct: (4, 0, 4) min: 0 max: 255
12:21:17 plane zct: (4, 0, 5) min: 0 max: 255
12:21:17 plane zct: (4, 0, 6) min: 0 max: 255
12:21:17 plane zct: (4, 0, 7) min: 0 max: 255
12:21:17 plane zct: (4, 0, 8) min: 0 max: 255
12:21:17 plane zct: (4, 0, 9) min: 0 max: 255
12:21:17 plane zct: (4, 1, 0) min: 0 max: 255
12:21:17 plane zct: (4, 1, 1) min: 0 max: 255
12:21:17 plane zct: (4, 1, 2) min: 0 max: 255
12:21:17 plane zct: (4, 1, 3) min: 0 max: 255
12:21:17 plane zct: (4, 1, 4) min: 0 max: 255
12:21:17 plane zct: (4, 1, 5) min: 0 max: 255
12:21:17 plane zct: (4, 1, 6) min: 0 max: 255
12:21:17 plane zct: (4, 1, 7) min: 0 max: 255
12:21:17 plane zct: (4, 1, 8) min: 0 max: 255
12:21:17 plane zct: (4, 1, 9) min: 0 max: 255
12:21:17 plane zct: (4, 2, 0) min: 0 max: 255
12:21:17 plane zct: (4, 2, 1) min: 0 max: 255
12:21:17 plane zct: (4, 2, 2) min: 0 max: 255
12:21:17 plane zct: (4, 2, 3) min: 0 max: 255
12:21:17 plane zct: (4, 2, 4) min: 0 max: 255
12:21:17 plane zct: (4, 2, 5) min: 0 max: 255
12:21:17 plane zct: (4, 2, 6) min: 0 max: 255
12:21:17 plane zct: (4, 2, 7) min: 0 max: 255
12:21:17 plane zct: (4, 2, 8) min: 0 max: 255
12:21:17 plane zct: (4, 2, 9) min: 0 max: 255
12:21:17 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
12:21:21
12:21:21 List Projects:
12:21:21 ==================================================
12:21:21 Project:1 Name:"Project 1" (owner=training_user)
12:21:21 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
12:21:21 Image:1 Name:"test.fake" (owner=training_user)
12:21:21 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
12:21:21 Image:12 Name:"New Image" (owner=training_user)
12:21:21 Image:2 Name:"test.fake" (owner=training_user)
12:21:21 Dataset:7 Name:"New Dataset" (owner=training_user)
12:21:21 Project:7 Name:"Project 1" (owner=training_user)
12:21:21 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
12:21:21 Image:13 Name:"test.fake" (owner=training_user)
12:21:21 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
12:21:21 Image:24 Name:"New Image" (owner=training_user)
12:21:21 Image:25 Name:"newImageFrom15" (owner=training_user)
12:21:21 Image:14 Name:"test.fake" (owner=training_user)
12:21:21 Dataset:19 Name:"New Dataset" (owner=training_user)
12:21:21 Dataset:29 Name:"new Name 1" (owner=training_user)
12:21:21 Dataset:30 Name:"new Name 2" (owner=training_user)
12:21:21 Project:51 Name:"Project 1" (owner=training_user)
12:21:21 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
12:21:21 Image:551 Name:"test.fake" (owner=training_user)
12:21:21 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
12:21:21 Image:552 Name:"test.fake" (owner=training_user)
12:21:21
12:21:21 List orphaned Datasets:
12:21:21 ==================================================
12:21:21 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
12:21:21 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
12:21:21 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
12:21:21 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
12:21:21 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
12:21:21 Dataset:8 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:9 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:10 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:11 Name:"New Dataset" (owner=training_user)
12:21:21 Dataset:12 Name:"New Dataset2" (owner=training_user)
12:21:21 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
12:21:21 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
12:21:21 Dataset:20 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:21 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:22 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:23 Name:"New Dataset" (owner=training_user)
12:21:21 Dataset:24 Name:"New Dataset2" (owner=training_user)
12:21:21 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
12:21:21 Dataset:26 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:27 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:28 Name:"MyDataset" (owner=training_user)
12:21:21 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
12:21:21 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
12:21:21
12:21:21 Images in Dataset: 52
12:21:21 ==================================================
12:21:21 Image:552 Name:"test.fake" (owner=training_user)
12:21:21
12:21:21 Image:553
12:21:21 ==================================================
12:21:21 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:21 X: 512
12:21:21 Y: 512
12:21:21 Z: 5
12:21:21 C: 3
12:21:21 T: 10
12:21:21 Channel: 0 Color: (255, 0, 0)
12:21:21 Lookup table: None
12:21:21 Is reverse intensity? False
12:21:21 Channel: 1 Color: (0, 255, 0)
12:21:21 Lookup table: None
12:21:21 Is reverse intensity? False
12:21:21 Channel: 2 Color: (0, 0, 255)
12:21:21 Lookup table: None
12:21:21 Is reverse intensity? False
12:21:21 Pixel Size X: None
12:21:21
12:21:21 List Screens:
12:21:21 ==================================================
12:21:21 Screen:1 Name:"Screen" (owner=training_user)
12:21:21 Plate:1 Name:"Plate" (owner=training_user)
12:21:21 Plate:2 Name:"Plate Name 0" (owner=training_user)
12:21:21 Screen:4 Name:"Screen" (owner=training_user)
12:21:21 Plate:5 Name:"Plate" (owner=training_user)
12:21:21 Plate:6 Name:"Plate Name 0" (owner=training_user)
12:21:21 Screen:51 Name:"Screen" (owner=training_user)
12:21:21 Plate:51 Name:"Plate" (owner=training_user)
12:21:21 Plate:52 Name:"Plate Name 0" (owner=training_user)
12:21:21 Screen:2 Name:"Screen" (owner=training_user-2)
12:21:21 Screen:5 Name:"Screen" (owner=training_user-2)
12:21:21 Screen:52 Name:"Screen" (owner=training_user-2)
12:21:21
12:21:21 Plate:52
12:21:21 ==================================================
12:21:21
12:21:21 Number of fields: (0, 0)
12:21:21
12:21:21 Grid size: {'rows': 1, 'columns': 3}
12:21:21
12:21:21 Wells in Plate: Plate Name 0
12:21:21 Well: 0 0 Fields: 1
12:21:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 554
12:21:21 Well: 0 1 Fields: 1
12:21:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 556
12:21:21 Well: 0 2 Fields: 1
12:21:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 555
12:21:21 51 <class 'omero.model.MapAnnotationI'>
12:21:21 added by training_user
12:21:21 Image ID: 553
12:21:21 Annotation ID: 51
12:21:21 553
12:21:21 Channel rendering settings:
12:21:21 Name: 0
12:21:21 Color: FF0000
12:21:21 Active: True
12:21:21 Levels: 0.0 - 255.0
12:21:21 Name: 1
12:21:21 Color: 00FF00
12:21:21 Active: True
12:21:21 Levels: 0.0 - 255.0
12:21:21 Name: 2
12:21:21 Color: 0000FF
12:21:21 Active: True
12:21:21 Levels: 0.0 - 255.0
12:21:21 isGreyscaleRenderingModel: False
12:21:21 Default Z/T positions:
12:21:21 Z = 2, T = 0
12:21:21 Rendering Defs on Image:
12:21:21 ID: 153 (owner: training_user training_user)
12:21:21 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
12:21:21 ROI: ID: 52
12:21:21 Shape: id 121 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
12:21:21 Shape: id 122 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
12:21:21 ROI: ID: 53
12:21:21 Shape: id 123 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
12:21:21 ROI: ID: 54
12:21:21 Shape: id 124 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
12:21:21 ROI: ID: 55
12:21:21 Shape: id 125 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
12:21:21 ROI: ID: 56
12:21:21 <class 'omero.model.PolygonI'> Not supported by this code
12:21:21 Shape: id 126 theT 0 theZ 2 textValue test-Polygon
12:21:21 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
12:21:21 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
12:21:21 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
12:21:21 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
12:21:21 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
12:21:21 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
12:21:21 Removing Shape from ROI...
12:21:21 Deleting ROI: 57
12:21:21 Table Columns:
12:21:21 Uid
12:21:21 MyStringColumnInit
12:21:21 Row count: 10
12:21:21
12:21:21 Get All Data for rows: [3, 5, 7]
12:21:21 Data for Column: Uid
12:21:21 1
12:21:21 2
12:21:21 3
12:21:21 4
12:21:21 5
12:21:21 6
12:21:21 7
12:21:21 8
12:21:21 9
12:21:21 10
12:21:21 Data for Column: MyStringColumnInit
12:21:21 one
12:21:21 two
12:21:21 three
12:21:21 four
12:21:21 five
12:21:21 six
12:21:21 seven
12:21:21 eight
12:21:21 nine
12:21:21 ten
12:21:21
12:21:21 Get All Data for rows with slice: [3, 5, 7]
12:21:21 Data for Column: Uid
12:21:21 4
12:21:21 6
12:21:21 8
12:21:21 Data for Column: MyStringColumnInit
12:21:21 four
12:21:21 six
12:21:21 eight
12:21:21
12:21:21 Get Data for cols: [1] and between rows: 3 - 7
12:21:21 Data for Column: MyStringColumnInit
12:21:21 four
12:21:21 five
12:21:21 six
12:21:21 seven
12:21:21
12:21:21 Get Data for cols: [1] and between rows: 3 - 7 with slice
12:21:21 Data for Column: MyStringColumnInit
12:21:21 four
12:21:21 five
12:21:21 six
12:21:21 seven
12:21:21 Query Results for Column: Uid
12:21:21 3
12:21:21 4
12:21:21 5
12:21:21 6
12:21:21 7
12:21:21 8
12:21:21 Query Results for Column: MyStringColumnInit
12:21:21 three
12:21:21 four
12:21:21 five
12:21:21 six
12:21:21 seven
12:21:21 eight
12:21:21 Opened table with row-count: 10
12:21:21 New dataset, Id: 57
12:21:21 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
12:21:21 55 <class 'omero.model.TagAnnotationI'> added by training_user
12:21:21 Tag value: New Tag
12:21:21 56 <class 'omero.model.MapAnnotationI'> added by training_user
12:21:21
12:21:21 Creating an OriginalFile and FileAnnotation
12:21:21 Attaching FileAnnotation to Dataset: File ID: 57 , README.txt Size: 15
12:21:21
12:21:21 Annotations on Dataset: New Dataset
12:21:21 File ID: 352 README.txt Size: 15
12:21:21
12:21:21 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
12:21:21 File downloaded!
12:21:21 7 README.txt
12:21:21 20 README.txt
12:21:21 57 README.txt
12:21:21 Found Annotation with namespace: imperial.training.demo
12:21:21 Plane: 0 0 0
12:21:21 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
12:21:21 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
12:21:21
12:21:21 List Datasets:
12:21:21 ID: 8 Name: MyDataset
12:21:21 ID: 9 Name: MyDataset
12:21:21 ID: 10 Name: MyDataset
12:21:21 ID: 20 Name: MyDataset
12:21:21 ID: 21 Name: MyDataset
12:21:21 ID: 22 Name: MyDataset
12:21:21 ID: 26 Name: MyDataset
12:21:21 ID: 27 Name: MyDataset
12:21:21 ID: 28 Name: MyDataset
12:21:21 ID: 58 Name: MyDataset
12:21:21 ID: 59 Name: MyDataset
12:21:21 ID: 60 Name: MyDataset
12:21:21
12:21:21 List Tags:
12:21:21 ID: 8 Text: MyTag Desc: MyTag 0
12:21:25 ID: 9 Text: MyTag Desc: MyTag 1
12:21:25 ID: 10 Text: MyTag Desc: MyTag 2
12:21:25 ID: 21 Text: MyTag Desc: MyTag 0
12:21:25 ID: 22 Text: MyTag Desc: MyTag 1
12:21:25 ID: 23 Text: MyTag Desc: MyTag 2
12:21:25 ID: 29 Text: MyTag Desc: MyTag 0
12:21:25 ID: 30 Text: MyTag Desc: MyTag 1
12:21:25 ID: 31 Text: MyTag Desc: MyTag 2
12:21:25 ID: 58 Text: MyTag Desc: MyTag 0
12:21:25 ID: 59 Text: MyTag Desc: MyTag 1
12:21:25 ID: 60 Text: MyTag Desc: MyTag 2
12:21:25 New dataset, Id: 61
12:21:25 New dataset 2, Id: 62
12:21:25 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:25 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
12:21:25 [[ 0 0 0 ... 102 103 104]
12:21:25 [ 0 0 0 ... 102 103 104]
12:21:25 [ 0 0 0 ... 102 103 104]
12:21:25 ...
12:21:25 [ 5 6 7 ... 102 103 104]
12:21:25 [ 5 6 7 ... 102 103 104]
12:21:25 [ 5 6 7 ... 102 103 104]]
12:21:25 shape: (100, 100)
12:21:25 min: 0 max: 104 pixel type: uint8
12:21:25 Average : 53.9125
12:21:25 Getting data for T, tile: 0 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 1 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 2 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 3 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 4 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 5 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 6 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 7 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 8 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 9 (256, 0, 10, 512)
12:21:25 kymograph_data (512, 100)
12:21:25 Attaching kymograph.png to image
12:21:25 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:21:25 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
12:21:25 [[ 0 0 0 ... 102 103 104]
12:21:25 [ 0 0 0 ... 102 103 104]
12:21:25 [ 0 0 0 ... 102 103 104]
12:21:25 ...
12:21:25 [ 5 6 7 ... 102 103 104]
12:21:25 [ 5 6 7 ... 102 103 104]
12:21:25 [ 5 6 7 ... 102 103 104]]
12:21:25 shape: (100, 100)
12:21:25 min: 0 max: 104 pixel type: uint8
12:21:25 Average : 53.9125
12:21:25 Getting data for T, tile: 0 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 1 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 2 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 3 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 4 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 5 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 6 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 7 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 8 (256, 0, 10, 512)
12:21:25 Getting data for T, tile: 9 (256, 0, 10, 512)
12:21:25 kymograph_data (512, 100)
12:21:25 Attaching kymograph.png to image
12:21:25 No file downloaded. Project not rated.
12:21:25 New image, Id: 562
12:21:25 Starting at: http://nginx/web/api/
12:21:25 CSRF token K94Pd37qW0lyuyXxDXJlhXHb9eFxZGbs
12:21:25 Servers:
12:21:25 -id: 1
12:21:25 name: omero
12:21:25 host: omero
12:21:25 port: 4064
12:21:25 -id: 2
12:21:25 name: testintegration
12:21:25 host: testintegration
12:21:25 port: 14064
12:21:25 eventContext {'sessionId': 260, 'sessionUuid': '186ade8f-8399-4d8c-8cdf-9c858ba51715', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
12:21:25 Projects:
12:21:25 2 Project 0
12:21:25 3 Project 0
12:21:25 Created Project: 56 API TEST foo
12:21:25 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 56, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/56/datasets/'}}
12:21:25 !! 12/19/25 12:21:25.472 error: communicator not destroyed during global destruction.+ deactivate
12:21:25 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:21:25 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:21:25 + export PATH
12:21:25 + unset _OLD_VIRTUAL_PATH
12:21:25 + '[' -n '' ']'
12:21:25 + hash -r
12:21:25 + '[' -n '' ']'
12:21:25 + unset VIRTUAL_ENV
12:21:25 + unset VIRTUAL_ENV_PROMPT
12:21:25 + '[' '!' '' = nondestructive ']'
12:21:25 + unset -f deactivate
12:21:25 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
12:21:25 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
12:21:27 Note: Some input files use unchecked or unsafe operations.
12:21:27 Note: Recompile with -Xlint:unchecked for details.
12:21:27 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
12:21:31 omero.cmd.Delete2Response@1c80e49b
12:21:31 omero.cmd.Delete2Response@2cb3d0f7
12:21:32 one [class java.lang.String] 1.0 [class java.lang.Double]
12:21:32 two [class java.lang.String] 2.0 [class java.lang.Double]
12:21:32 three [class java.lang.String] 3.0 [class java.lang.Double]
12:21:32 -1.0
12:21:32 0
12:21:32 1
12:21:32 2
12:21:35 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
12:21:35 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
12:21:35 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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12:21:35 235 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 236 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 237 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 238 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 239 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 240 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 241 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 242 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 243 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 244 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 245 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 246 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
12:21:35 Project:8 Project 0
12:21:35 Project:51 Project 1
12:21:35 dataset:51 Dataset 1-1
12:21:35 dataset:52 Dataset 1-2
12:21:35 dataset:57 New Dataset
12:21:35 Project:52 Project 0
12:21:35 Project:7 Project 1
12:21:35 dataset:19 New Dataset
12:21:35 dataset:14 Dataset 1-2
12:21:35 dataset:29 new Name 1
12:21:35 dataset:13 Dataset 1-1
12:21:35 dataset:30 new Name 2
12:21:35 Project:1 Project 1
12:21:35 dataset:2 Dataset 1-2
12:21:35 dataset:1 Dataset 1-1
12:21:35 dataset:7 New Dataset
12:21:35 Project:2 Project 0
12:21:35 image:562 New Image
12:21:35 image:552 test.fake
12:21:35 image:563 newImageFrom553
12:21:35 5
12:21:35 10
12:21:35 3
12:21:35 512
12:21:35 512
12:21:35 screen:5 Screen
12:21:35 screen:1 Screen
12:21:35 plate:2 Plate Name 0
12:21:35 plate:1 Plate
12:21:35 screen:51 Screen
12:21:35 plate:51 Plate
12:21:35 plate:52 Plate Name 0
12:21:35 screen:4 Screen
12:21:35 plate:5 Plate
12:21:35 plate:6 Plate Name 0
12:21:35 screen:2 Screen
12:21:35 screen:52 Screen
12:21:35 well:51
12:21:35 well:53
12:21:35 well:52
12:21:35 plate:7
12:21:35 plate:53
12:21:35 plate:52
12:21:35 plate:51
12:21:35 plate:6
12:21:35 plate:1
12:21:35 plate:2
12:21:35 plate:3
12:21:35 plate:5
12:21:36
12:21:36 List Datasets:
12:21:36 ID: 8 Name: MyDataset
12:21:36 ID: 9 Name: MyDataset
12:21:36 ID: 10 Name: MyDataset
12:21:36 ID: 20 Name: MyDataset
12:21:36 ID: 21 Name: MyDataset
12:21:36 ID: 22 Name: MyDataset
12:21:36 ID: 26 Name: MyDataset
12:21:36 ID: 27 Name: MyDataset
12:21:36 ID: 28 Name: MyDataset
12:21:36 ID: 58 Name: MyDataset
12:21:36
12:21:36 List Tags:
12:21:36 ID: 29 NS: omero.training.demo
12:21:36 ID: 30 NS: omero.training.demo
12:21:36 ID: 31 NS: omero.training.demo
12:21:36 ID: 66 NS: omero.training.demo
12:21:36 ID: 67 NS: omero.training.demo
12:21:36 ID: 68 NS: omero.training.demo
12:21:36 Dataset:21 MyDataset
12:21:36 Dataset:27 MyDataset
12:21:36 Dataset:11 New Dataset
12:21:36 Dataset:63 FileAnnotationDelete
12:21:36 Dataset:12 New Dataset2
12:21:36 Dataset:61 New Dataset
12:21:36 Project:1 Project 1
12:21:36 Project:51 Project 1
12:21:36 Dataset:65 MyDataset
12:21:36 Dataset:28 MyDataset
12:21:36 Dataset:60 MyDataset
12:21:36 Dataset:3 Orphaned dataset 1
12:21:36 Dataset:16 Orphaned dataset 2
12:21:36 Dataset:4 Orphaned dataset 2
12:21:36 Dataset:25 FileAnnotationDelete
12:21:36 Dataset:62 New Dataset2
12:21:36 Dataset:10 MyDataset
12:21:36 Dataset:23 New Dataset
12:21:36 Dataset:58 MyDataset
12:21:36 Dataset:26 MyDataset
12:21:36 Dataset:9 MyDataset
12:21:36 Dataset:53 Orphaned dataset 1
12:21:36 Dataset:59 MyDataset
12:21:36 Dataset:8 MyDataset
12:21:36 Dataset:15 Orphaned dataset 1
12:21:36 Dataset:22 MyDataset
12:21:36 Dataset:54 Orphaned dataset 2
12:21:36 Dataset:64 MyDataset
12:21:36 Dataset:66 MyDataset
12:21:36 Dataset:24 New Dataset2
12:21:36 Dataset:20 MyDataset
12:21:36 Project:7 Project 1
12:21:36 Size:0
12:21:36 512 512
12:21:36 9
12:21:37 9
12:21:37 1
12:21:37 Logged in as ladmin_user
12:21:38 Added 'training_user's tag' to dataset Dataset 1-1 on behalf of training_user
12:21:38 Added 'ladmin_user's tag' to dataset Dataset 1-1 as admin.
12:21:38 Finished: SUCCESS
