02:14:58 Started by upstream project "Trigger" build number 9
02:14:58 originally caused by:
02:14:58 Started by timer
02:14:58 Running as SYSTEM
02:14:58 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
02:14:58 [OMERO-training] $ /bin/bash -xe /tmp/jenkins12163562420192920864.sh
02:14:58 + rm -rf /home/omero/workspace/OMERO-training/.venv3
02:16:26 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
02:16:44 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
02:16:44 ++ deactivate nondestructive
02:16:44 ++ '[' -n '' ']'
02:16:44 ++ '[' -n '' ']'
02:16:44 ++ hash -r
02:16:44 ++ '[' -n '' ']'
02:16:44 ++ unset VIRTUAL_ENV
02:16:44 ++ unset VIRTUAL_ENV_PROMPT
02:16:44 ++ '[' '!' nondestructive = nondestructive ']'
02:16:44 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
02:16:44 ++ export VIRTUAL_ENV
02:16:44 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:16:44 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:16:44 ++ export PATH
02:16:44 ++ '[' -n '' ']'
02:16:44 ++ '[' -z '' ']'
02:16:44 ++ _OLD_VIRTUAL_PS1=
02:16:44 ++ PS1='(.venv3) '
02:16:44 ++ export PS1
02:16:44 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
02:16:44 ++ export VIRTUAL_ENV_PROMPT
02:16:44 ++ hash -r
02:16:44 + pip install -U pip setuptools
02:16:45 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
02:16:45 Collecting pip
02:16:45 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
02:16:45 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
02:16:45 Collecting setuptools
02:16:45 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB)
02:16:45 Installing collected packages: setuptools, pip
02:16:45 Attempting uninstall: setuptools
02:16:45 Found existing installation: setuptools 65.5.1
02:16:46 Uninstalling setuptools-65.5.1:
02:16:46 Successfully uninstalled setuptools-65.5.1
02:16:55 Attempting uninstall: pip
02:16:55 Found existing installation: pip 22.3.1
02:16:56 Uninstalling pip-22.3.1:
02:16:56 Successfully uninstalled pip-22.3.1
02:17:08 Successfully installed pip-26.1.2 setuptools-83.0.0
02:17:08 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
02:17:09 Collecting zeroc-ice==3.6.5
02:17:09 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
02:17:12 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.4 MB/s 0:00:02
02:17:12 Installing collected packages: zeroc-ice
02:17:16 Successfully installed zeroc-ice-3.6.5
02:17:16 + pip install markdown
02:17:17 Collecting markdown
02:17:17 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
02:17:17 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
02:17:17 Installing collected packages: markdown
02:17:18 Successfully installed markdown-3.10.2
02:17:18 + pip install mox3 pytest 'pytest-xdist<2'
02:17:19 Collecting mox3
02:17:19 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
02:17:19 Collecting pytest
02:17:19 Using cached pytest-9.1.1-py3-none-any.whl.metadata (7.6 kB)
02:17:20 Collecting pytest-xdist<2
02:17:20 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
02:17:20 Collecting execnet>=1.1 (from pytest-xdist<2)
02:17:20 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
02:17:20 Collecting pytest-forked (from pytest-xdist<2)
02:17:20 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
02:17:20 Collecting six (from pytest-xdist<2)
02:17:20 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
02:17:20 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
02:17:20 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
02:17:20 Collecting fixtures>=3.0.0 (from mox3)
02:17:20 Using cached fixtures-4.3.2-py3-none-any.whl.metadata (22 kB)
02:17:20 Collecting iniconfig>=1.0.1 (from pytest)
02:17:20 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
02:17:20 Collecting packaging>=22 (from pytest)
02:17:20 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
02:17:20 Collecting pluggy<2,>=1.5 (from pytest)
02:17:20 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
02:17:20 Collecting pygments>=2.7.2 (from pytest)
02:17:20 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
02:17:20 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (83.0.0)
02:17:20 Collecting py (from pytest-forked->pytest-xdist<2)
02:17:20 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
02:17:21 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
02:17:21 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
02:17:21 Using cached pytest-9.1.1-py3-none-any.whl (386 kB)
02:17:21 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
02:17:21 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
02:17:21 Using cached fixtures-4.3.2-py3-none-any.whl (41 kB)
02:17:21 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
02:17:21 Using cached packaging-26.2-py3-none-any.whl (100 kB)
02:17:21 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
02:17:21 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
02:17:21 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
02:17:21 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
02:17:21 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
02:17:21 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
02:17:36
02:17:36 Successfully installed execnet-2.1.2 fixtures-4.3.2 iniconfig-2.3.0 mox3-1.1.0 packaging-26.2 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.20.0 pytest-9.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
02:17:36 + pip install tables
02:17:37 Collecting tables
02:17:37 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
02:17:37 Collecting numpy>=1.20.0 (from tables)
02:17:37 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
02:17:37 Collecting numexpr>=2.6.2 (from tables)
02:17:37 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
02:17:37 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2)
02:17:37 Collecting py-cpuinfo (from tables)
02:17:37 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
02:17:38 Collecting blosc2>=2.3.0 (from tables)
02:17:38 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.8 kB)
02:17:38 Collecting ndindex (from blosc2>=2.3.0->tables)
02:17:38 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
02:17:38 Collecting msgpack (from blosc2>=2.3.0->tables)
02:17:38 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
02:17:38 Collecting pydantic (from blosc2>=2.3.0->tables)
02:17:38 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
02:17:38 Collecting requests (from blosc2>=2.3.0->tables)
02:17:38 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
02:17:38 Collecting rich (from blosc2>=2.3.0->tables)
02:17:38 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
02:17:38 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
02:17:38 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
02:17:38 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
02:17:38 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
02:17:39 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
02:17:39 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
02:17:39 Collecting typing-extensions>=4.14.1 (from pydantic->blosc2>=2.3.0->tables)
02:17:39 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
02:17:39 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
02:17:39 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
02:17:39 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
02:17:39 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
02:17:39 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
02:17:39 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
02:17:39 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
02:17:39 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
02:17:39 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
02:17:39 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
02:17:39 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
02:17:39 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
02:17:39 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0)
02:17:40 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
02:17:40 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
02:17:40 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
02:17:40 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (6.8 MB)
02:17:40 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
02:17:40 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
02:17:40 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
02:17:40 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
02:17:40 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
02:17:40 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
02:17:40 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
02:17:40 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
02:17:40 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
02:17:40 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
02:17:40 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
02:17:40 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
02:17:40 Using cached idna-3.18-py3-none-any.whl (65 kB)
02:17:40 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
02:17:40 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
02:17:40 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
02:17:40 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
02:17:40 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
02:17:40 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
02:17:40 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, threadpoolctl, numpy, ndindex, msgpack, mdurl, idna, charset_normalizer, certifi, annotated-types, typing-inspection, requests, pydantic-core, numexpr, markdown-it-py, rich, pydantic, blosc2, tables
02:18:14
02:18:14 Successfully installed annotated-types-0.7.0 blosc2-4.7.0 certifi-2026.6.17 charset_normalizer-3.4.9 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 requests-2.34.2 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-extensions-4.16.0 typing-inspection-0.4.2 urllib3-2.7.0
02:18:14 + pip install jinja2
02:18:16 Collecting jinja2
02:18:16 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
02:18:16 Collecting MarkupSafe>=2.0 (from jinja2)
02:18:16 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
02:18:16 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
02:18:16 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
02:18:16 Installing collected packages: MarkupSafe, jinja2
02:18:17
02:18:17 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
02:18:17 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
02:18:26 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 4
02:18:29 Copied 2 artifacts from "OMERO-build" build number 5
02:18:29 Copied 2 artifacts from "OMERO-build-build" build number 12
02:18:29 [OMERO-training] $ /bin/bash -xe /tmp/jenkins18204463800009620522.sh
02:18:29 + source /home/settings.env
02:18:29 ++ OMERO_DB_HOST=pg
02:18:29 ++ OMERO_DB_USER=postgres
02:18:29 ++ OMERO_DB_PASS=
02:18:29 ++ OMERO_ROOT_PASS=omero
02:18:29 ++ OMERO_DATA_DIR=/OMERO
02:18:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
02:18:29 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
02:18:29 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
02:18:29 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
02:18:29 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
02:18:29 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
02:18:29 ++ ls openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:29 + ZIP=openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:29 + DIST=openmicroscopy-5.6.3-614-46d99bded2-ice36-b5
02:18:29 + unzip -n openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:29 Archive: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.classpath-template
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/Pull_Request_Template.md
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/workflows/
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/workflows/docker_build.yml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/workflows/release.yml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/workflows/source_build.yml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.github/workflows/update.yaml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.mailmap
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/.project
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/CMakeLists.txt
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/CONTRIBUTING.md
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/Dockerfile
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/LICENSE.txt
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/README.md
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/SUPPORT.md
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/build.bat
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/build.py
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/build.xml
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/.classpath
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/.project
02:18:29 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/resources/
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/resources/excludebugs.xml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/resources/global.xml
02:18:29 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/resources/hibernate.xml
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02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/misc/Makefile
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/misc/current.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/misc/enums.py
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__1/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__1/OMERO3__7.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__10/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__10/OMERO3A__9.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/OMERO3A__10.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/OMERO3A__5.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__2/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__2/OMERO3A__1.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/OMERO3A__2.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/OMERO3__5.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/OMERO3A__3.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/OMERO3__5.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__5/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__5/OMERO3A__4.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__6/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__6/OMERO3A__5.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__7/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__7/OMERO3A__6.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__8/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__8/OMERO3A__6.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__9/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__9/OMERO3A__8.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__4/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__4/OMERO3__1.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__5/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__5/OMERO3__4.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__6/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__6/OMERO3__5.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__7/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__7/OMERO3__6.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.1__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.1__0/OMERO4__0.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4__0/OMERO3A__11.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
02:18:40 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
02:18:40 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
02:18:41 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
02:18:41 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
02:18:41 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
02:18:41 creating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-footer.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-header.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/schema.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/views.sql
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/test.xml
02:18:41 inflating: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/update_dependencies.sh
02:18:41 extracting: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/antlib/resources/gitversion.xml
02:18:41 extracting: openmicroscopy-5.6.3-614-46d99bded2-ice36-b5/components/tools/OmeroCpp/cmake/GitVersion.cmake
02:18:41 + rm -f openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:41 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-614-46d99bded2-ice36-b5 /home/omero/workspace/OMERO-training/openmicroscopy
02:18:41 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
02:18:41 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
02:18:41 ++ ls OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:41 + ZIP=OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:41 + DIST=OMERO.server-5.6.3-614-46d99bded2-ice36-b5
02:18:41 + unzip -n OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:41 Archive: OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/blitz/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/grid/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/profiles/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/error/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/janelia/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/matplotlib/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/ncsa_paledit/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/seaborn/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/wcif/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/analysis_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/annotation_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/export_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/figure_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/import_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/util_scripts/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/server/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/misc/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__1/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__10/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__2/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__5/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__6/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__7/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__8/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__9/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__4/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__5/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__6/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__7/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.1__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/var/
02:18:41 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/var/tmp/
02:18:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/LICENSE.txt
02:18:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/backup.cfg
02:18:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/blitz/mail-senders.example
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02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/path.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/pil.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/postgresql.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/psf-v2.0.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/psf-v2.5.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/scons.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/slf4j.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/tablelayout.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/which.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/zlib-libpng.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/zpl-v2.1.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/README.txt
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/misc/Makefile
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/misc/current.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/misc/enums.py
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__1/OMERO3__7.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__10/OMERO3A__9.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/OMERO3A__10.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/OMERO3A__5.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__2/OMERO3A__1.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/OMERO3A__2.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/OMERO3__5.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/OMERO3A__3.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/OMERO3__5.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__5/OMERO3A__4.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__6/OMERO3A__5.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__7/OMERO3A__6.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__8/OMERO3A__6.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__9/OMERO3A__8.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__4/OMERO3__1.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__5/OMERO3__4.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__6/OMERO3__5.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__7/OMERO3__6.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.1__0/OMERO4__0.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
02:18:53 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4__0/OMERO3A__11.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-footer.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-header.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/schema.sql
02:18:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/views.sql
02:18:54 + rm -f OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
02:18:54 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-614-46d99bded2-ice36-b5 /home/omero/workspace/OMERO-training/OMERO.server
02:18:54 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
02:18:54 ++ deactivate nondestructive
02:18:54 ++ '[' -n '' ']'
02:18:54 ++ '[' -n '' ']'
02:18:54 ++ hash -r
02:18:54 ++ '[' -n '' ']'
02:18:54 ++ unset VIRTUAL_ENV
02:18:54 ++ unset VIRTUAL_ENV_PROMPT
02:18:54 ++ '[' '!' nondestructive = nondestructive ']'
02:18:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
02:18:54 ++ export VIRTUAL_ENV
02:18:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:18:54 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:18:54 ++ export PATH
02:18:54 ++ '[' -n '' ']'
02:18:54 ++ '[' -z '' ']'
02:18:54 ++ _OLD_VIRTUAL_PS1=
02:18:54 ++ PS1='(.venv3) '
02:18:54 ++ export PS1
02:18:54 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
02:18:54 ++ export VIRTUAL_ENV_PROMPT
02:18:54 ++ hash -r
02:18:54 + for x in *.gz
02:18:54 + pip install omero_dropbox-5.7.1.dev0.tar.gz
02:18:55 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
02:18:55 Installing build dependencies: started
02:18:56 Installing build dependencies: finished with status 'done'
02:18:56 Getting requirements to build wheel: started
02:18:56 Getting requirements to build wheel: finished with status 'done'
02:18:56 Preparing metadata (pyproject.toml): started
02:18:56 Preparing metadata (pyproject.toml): finished with status 'done'
02:18:56 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
02:18:56 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
02:18:57 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
02:18:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
02:18:57 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
02:18:57 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
02:18:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
02:18:57 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
02:18:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
02:18:57 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
02:18:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
02:18:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
02:18:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
02:18:57 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
02:18:57 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
02:18:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
02:18:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
02:18:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
02:18:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
02:18:57 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
02:18:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
02:18:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
02:18:57 Using cached future-1.0.0-py3-none-any.whl (491 kB)
02:18:57 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
02:18:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
02:18:57 Building wheels for collected packages: omero-dropbox
02:18:57 Building wheel for omero-dropbox (pyproject.toml): started
02:18:57 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
02:18:57 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=18b89eace85b579cd3424e70da48d10a608b021978816c858aceaabf16678f88
02:18:57 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
02:18:57 Successfully built omero-dropbox
02:18:57 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
02:19:21
02:19:21 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.22.1 portalocker-3.2.0
02:19:21 + for x in *.gz
02:19:21 + pip install omero_marshal-0.9.2.dev0.tar.gz
02:19:22 Processing ./omero_marshal-0.9.2.dev0.tar.gz
02:19:22 Installing build dependencies: started
02:19:23 Installing build dependencies: finished with status 'done'
02:19:23 Getting requirements to build wheel: started
02:19:23 Getting requirements to build wheel: finished with status 'done'
02:19:23 Preparing metadata (pyproject.toml): started
02:19:24 Preparing metadata (pyproject.toml): finished with status 'done'
02:19:24 Building wheels for collected packages: omero_marshal
02:19:24 Building wheel for omero_marshal (pyproject.toml): started
02:19:24 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
02:19:24 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=f45297251df6d0bf6f9cb2c74f8dceb7c455b25050fb438b561f3886be5e9547
02:19:24 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
02:19:24 Successfully built omero_marshal
02:19:24 Installing collected packages: omero_marshal
02:19:26 Successfully installed omero_marshal-0.9.2.dev0
02:19:26 + for x in *.gz
02:19:26 + pip install omero_py-5.22.2.dev0.tar.gz
02:19:27 Processing ./omero_py-5.22.2.dev0.tar.gz
02:19:27 Installing build dependencies: started
02:19:29 Installing build dependencies: finished with status 'done'
02:19:29 Getting requirements to build wheel: started
02:19:29 Getting requirements to build wheel: finished with status 'done'
02:19:29 Preparing metadata (pyproject.toml): started
02:19:29 Preparing metadata (pyproject.toml): finished with status 'done'
02:19:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
02:19:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
02:19:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
02:19:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
02:19:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
02:19:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
02:19:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
02:19:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
02:19:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
02:19:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
02:19:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
02:19:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
02:19:29 Building wheels for collected packages: omero-py
02:19:29 Building wheel for omero-py (pyproject.toml): started
02:19:30 Building wheel for omero-py (pyproject.toml): finished with status 'done'
02:19:30 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=b9982a8fe9da81f1b1a7cbc95d3643407c4b6fdffce9334ab7bc19905d9dffaa
02:19:30 Stored in directory: /home/omero/.cache/pip/wheels/67/6d/a0/54908d8e3aee8366415fea8426f418a6717addeb1669d2e673
02:19:30 Successfully built omero-py
02:19:30 Installing collected packages: omero-py
02:19:30 Attempting uninstall: omero-py
02:19:31 Found existing installation: omero-py 5.22.1
02:19:31 Uninstalling omero-py-5.22.1:
02:19:37 Successfully uninstalled omero-py-5.22.1
02:19:53 Successfully installed omero-py-5.22.2.dev0
02:19:53 + for x in *.gz
02:19:53 + pip install omero_scripts-5.10.1.dev0.tar.gz
02:19:54 Processing ./omero_scripts-5.10.1.dev0.tar.gz
02:19:54 Installing build dependencies: started
02:19:55 Installing build dependencies: finished with status 'done'
02:19:55 Getting requirements to build wheel: started
02:19:55 Getting requirements to build wheel: finished with status 'done'
02:19:55 Preparing metadata (pyproject.toml): started
02:19:56 Preparing metadata (pyproject.toml): finished with status 'done'
02:19:56 Building wheels for collected packages: omero-scripts
02:19:56 Building wheel for omero-scripts (pyproject.toml): started
02:19:56 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
02:19:56 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=a9208fc5693280f72221e4779419f1850a0a6f4b8db97baf1379327a768ba246
02:19:56 Stored in directory: /home/omero/.cache/pip/wheels/88/2f/31/9478f1cef9d86ee7a706f3c8d94d67d22081ff846c64d43aa0
02:19:56 Successfully built omero-scripts
02:19:56 Installing collected packages: omero-scripts
02:19:57 Successfully installed omero-scripts-5.10.1.dev0
02:19:57 + for x in *.gz
02:19:57 + pip install omero_web-5.32.1.dev0.tar.gz
02:19:58 Processing ./omero_web-5.32.1.dev0.tar.gz
02:19:58 Installing build dependencies: started
02:19:59 Installing build dependencies: finished with status 'done'
02:19:59 Getting requirements to build wheel: started
02:20:00 Getting requirements to build wheel: finished with status 'done'
02:20:00 Preparing metadata (pyproject.toml): started
02:20:00 Preparing metadata (pyproject.toml): finished with status 'done'
02:20:00 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
02:20:00 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
02:20:00 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
02:20:00 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
02:20:00 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
02:20:00 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
02:20:00 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
02:20:00 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
02:20:00 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
02:20:00 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
02:20:00 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
02:20:00 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
02:20:00 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
02:20:00 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
02:20:00 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
02:20:00 Collecting pytz (from omero-web==5.32.1.dev0)
02:20:00 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
02:20:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
02:20:00 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
02:20:01 Collecting importlib-resources (from omero-web==5.32.1.dev0)
02:20:01 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
02:20:01 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
02:20:01 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
02:20:01 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
02:20:01 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
02:20:01 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
02:20:01 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
02:20:01 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
02:20:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
02:20:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
02:20:01 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
02:20:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
02:20:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
02:20:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
02:20:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
02:20:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
02:20:01 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
02:20:01 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
02:20:01 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
02:20:01 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
02:20:01 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
02:20:01 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
02:20:01 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
02:20:01 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
02:20:01 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
02:20:01 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
02:20:01 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
02:20:01 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
02:20:01 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
02:20:01 Building wheels for collected packages: omero-web
02:20:01 Building wheel for omero-web (pyproject.toml): started
02:20:02 Building wheel for omero-web (pyproject.toml): finished with status 'done'
02:20:02 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=8af79e3f034becf045c43dd2903f00419e4c359f6b2ab77551852dc240c1ad0c
02:20:02 Stored in directory: /home/omero/.cache/pip/wheels/91/ad/79/ec318377d2e814ec25bf29bc612d81f9a885cbc4aa52a338d5
02:20:02 Successfully built omero-web
02:20:02 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
02:21:07
02:21:08 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
02:21:08 + cd /home/omero/workspace/OMERO-training/OMERO.server
02:21:08 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
02:21:08 + HOSTNAME=0a4e1f842665
02:21:08 + PORT=4064
02:21:08 + WEBHOST=http://nginx/web
02:21:08 + SERVER_NAME=omero
02:21:08 + ROOT_PASSWORD=omero
02:21:08 + GROUP_NAME=training_group
02:21:08 + GROUP_NAME_2=training_group-2
02:21:08 + USER_NAME=training_user
02:21:08 + USER_NAME_2=training_user-2
02:21:08 + LIGHTADMIN_USER_NAME=ladmin_user
02:21:08 + USER_PASSWORD=ome
02:21:08 + CONFIG_FILENAME=training_ice.config
02:21:08 + omero login root@0a4e1f842665:4064 -w omero
02:21:10 Created session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:10 + omero group add training_group --type read-only --ignore-existing
02:21:12 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:12 Added group training_group (id=3) with permissions rwr---
02:21:12 + omero group add training_group-2 --type read-only --ignore-existing
02:21:14 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:14 Added group training_group-2 (id=4) with permissions rwr---
02:21:14 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
02:21:15 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:16 Added user training_user (id=2) with password
02:21:16 + omero user joingroup --name training_user --group-name training_group training_group-2
02:21:17 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:17 2 is already in group 3
02:21:17 2 is already in group 4
02:21:18 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
02:21:19 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:19 Added user training_user-2 (id=3) with password
02:21:20 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
02:21:21 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:21 3 is already in group 3
02:21:21 3 is already in group 4
02:21:22 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
02:21:23 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:23 Added user ladmin_user (id=4) with password
02:21:24 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
02:21:25 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:25 4 is already in group 3
02:21:25 4 is already in group 4
02:21:26 ++ omero user info ladmin_user --style plain
02:21:26 ++ cut -d, -f1
02:21:27 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:28 + id=4
02:21:28 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
02:21:29 Using session for root@0a4e1f842665:4064. Idle timeout: 10 min. Current group: system
02:21:30 Experimenter:4
02:21:30 + omero logout
02:21:32 + touch test.fake
02:21:32 + omero login training_user@0a4e1f842665:4064 -w ome -g training_group
02:21:33 Created session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:33 + nProjects=1
02:21:33 + nDatasets=2
02:21:33 + echo 'Creating projects and datasets'
02:21:33 Creating projects and datasets
02:21:33 + (( i=1 ))
02:21:33 + (( i<=1 ))
02:21:33 ++ omero obj new Project 'name=Project 1'
02:21:35 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:35 + project=Project:1
02:21:35 + (( j=1 ))
02:21:35 + (( j<=2 ))
02:21:35 ++ omero obj new Dataset 'name=Dataset 1-1'
02:21:37 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:38 + dataset=Dataset:1
02:21:38 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:1
02:21:40 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:40 ProjectDatasetLink:1
02:21:40 + echo 'Importing image into dataset'
02:21:40 Importing image into dataset
02:21:40 + omero import -d Dataset:1 test.fake --debug ERROR
02:21:42 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:43 2026-07-10 02:21:43,103 274 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:21:43 2026-07-10 02:21:43,123 294 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:21:48 Image:1
02:21:48 Other imported objects:
02:21:48 Fileset:1
02:21:48
02:21:48 ==> Summary
02:21:48 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.066
02:21:48 + (( j++ ))
02:21:48 + (( j<=2 ))
02:21:48 ++ omero obj new Dataset 'name=Dataset 1-2'
02:21:50 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:50 + dataset=Dataset:2
02:21:50 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:2
02:21:52 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:52 ProjectDatasetLink:2
02:21:52 + echo 'Importing image into dataset'
02:21:52 Importing image into dataset
02:21:52 + omero import -d Dataset:2 test.fake --debug ERROR
02:21:54 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:21:55 2026-07-10 02:21:55,170 221 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:21:55 2026-07-10 02:21:55,184 235 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:21:58 Image:2
02:21:58 Other imported objects:
02:21:58 Fileset:2
02:21:58
02:21:58 ==> Summary
02:21:58 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.814
02:21:58 + (( j++ ))
02:21:58 + (( j<=2 ))
02:21:58 + (( i++ ))
02:21:58 + (( i<=1 ))
02:21:58 + (( j=1 ))
02:21:58 + (( j<=2 ))
02:21:58 + omero obj new Dataset 'name=Orphaned dataset 1'
02:22:00 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:00 Dataset:3
02:22:00 + (( j++ ))
02:22:00 + (( j<=2 ))
02:22:00 + omero obj new Dataset 'name=Orphaned dataset 2'
02:22:02 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:02 Dataset:4
02:22:02 + (( j++ ))
02:22:02 + (( j<=2 ))
02:22:02 + echo 'Importing image file'
02:22:02 Importing image file
02:22:02 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:22:02 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:22:08 ++ sed -n -e 's/^Image://p' image_import.log
02:22:08 + imageid=3
02:22:08 ++ omero obj new MapAnnotation
02:22:10 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:10 + MAP=MapAnnotation:1
02:22:10 + omero obj map-set MapAnnotation:1 mapValue testkey testvalue
02:22:12 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:12 MapAnnotation:1
02:22:12 + omero obj new ImageAnnotationLink parent=Image:3 child=MapAnnotation:1
02:22:14 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:14 ImageAnnotationLink:1
02:22:14 ++ omero obj new Screen name=Screen
02:22:16 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:16 + screen=Screen:1
02:22:16 ++ omero obj new Plate name=Plate
02:22:17 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:18 + plate=Plate:1
02:22:18 + omero obj new ScreenPlateLink parent=Screen:1 child=Plate:1
02:22:19 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:20 ScreenPlateLink:1
02:22:20 + echo 'Importing SPW file'
02:22:20 Importing SPW file
02:22:20 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
02:22:20 + omero import -r Screen:1 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
02:22:27 ++ sed -n -e 's/^Plate://p' plate_import.log
02:22:27 + plateid=2
02:22:27 + omero logout
02:22:29 + omero login training_user-2@0a4e1f842665:4064 -w ome -g training_group
02:22:31 Created session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:31 + omero obj new Project 'name=Project 0'
02:22:33 Using session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:33 Project:2
02:22:33 + omero obj new Dataset 'name=Dataset 0'
02:22:35 Using session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:35 Dataset:5
02:22:35 + omero import test.fake --debug ERROR
02:22:37 Using session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:38 2026-07-10 02:22:38,115 212 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:22:38 2026-07-10 02:22:38,128 225 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:22:40 Image:7
02:22:40 Other imported objects:
02:22:40 Fileset:5
02:22:40
02:22:40 ==> Summary
02:22:40 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.021
02:22:40 + omero obj new Screen name=Screen
02:22:42 Using session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:42 Screen:2
02:22:42 + omero obj new Plate name=Plate
02:22:44 Using session for training_user-2@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group
02:22:44 Plate:3
02:22:44 + omero login training_user@0a4e1f842665:4064 -w ome -g training_group-2
02:22:46 Created session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:46 + omero obj new Project 'name=Project 0'
02:22:48 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:48 Project:3
02:22:48 + omero obj new Dataset 'name=Dataset 0'
02:22:49 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:49 Dataset:6
02:22:50 + omero import test.fake --debug ERROR
02:22:51 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:52 2026-07-10 02:22:52,535 221 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:22:52 2026-07-10 02:22:52,549 235 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:22:54 Image:8
02:22:54 Other imported objects:
02:22:54 Fileset:6
02:22:54
02:22:54 ==> Summary
02:22:54 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.044
02:22:55 + omero obj new Screen name=Screen
02:22:56 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:56 Screen:3
02:22:56 + omero obj new Plate name=Plate
02:22:58 Using session for training_user@0a4e1f842665:4064. Idle timeout: 10 min. Current group: training_group-2
02:22:58 Plate:4
02:22:58 + omero logout
02:23:00 + echo omero.host=0a4e1f842665
02:23:00 + echo omero.port=4064
02:23:00 + echo omero.webhost=http://nginx/web
02:23:00 + echo omero.servername=omero
02:23:00 + echo omero.user=training_user
02:23:00 + echo omero.pass=ome
02:23:00 + echo omero.group=training_group
02:23:00 + echo omero.projectid=1
02:23:00 + echo omero.datasetid=2
02:23:00 + echo omero.imageid=3
02:23:00 + echo omero.plateid=2
02:23:00 + echo omero.screenid=1
02:23:00 + echo omero.group2=training_group-2
02:23:00 + echo omero.ladmin=ladmin_user
02:23:00 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:23:00 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
02:23:00 + omero sessions clear
02:23:02 1 session(s) cleared
02:23:02 !! 07/10/26 02:23:02.675 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
02:23:02 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
02:23:02 + pip install --upgrade requests
02:23:03 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.34.2)
02:23:03 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.9)
02:23:03 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.18)
02:23:03 Requirement already satisfied: urllib3<3,>=1.26 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.7.0)
02:23:03 Requirement already satisfied: certifi>=2023.5.7 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.6.17)
02:23:03 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
02:23:12 Running training suite
02:23:12 created 20 shapes
02:23:12 retrieved 20 shapes in 4 batches
02:23:12 Current user:
02:23:12 ID: 2
02:23:12 Username: training_user
02:23:12 Full Name: training_user training_user
02:23:12 Is Admin: False
02:23:12 []
02:23:12 Member of:
02:23:12 ID: 3 Name: training_group
02:23:12 ID: 4 Name: training_group-2
02:23:12 Current group: training_group
02:23:12 Group owners:
02:23:12 Group members:
02:23:12 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
02:23:12 ID: 2 UserName: training_user Name: training_user training_user
02:23:12 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
02:23:12 Owner of:
02:23:12 Admins:
02:23:12 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
02:23:12 ID: 0 UserName: root Name: root root
02:23:12 Created new Image:9 Name:"numpy image"
02:23:12 newPlane for z,t: 0 0 uint8 0 127
02:23:12 newPlane for z,t: 0 1 uint8 0 127
02:23:12 newPlane for z,t: 0 2 uint8 0 127
02:23:12 newPlane for z,t: 0 3 uint8 0 127
02:23:12 newPlane for z,t: 0 4 uint8 0 127
02:23:12 newPlane for z,t: 0 5 uint8 0 127
02:23:12 newPlane for z,t: 0 6 uint8 0 127
02:23:12 newPlane for z,t: 0 7 uint8 0 127
02:23:12 newPlane for z,t: 0 8 uint8 0 127
02:23:12 newPlane for z,t: 0 9 uint8 0 127
02:23:12 newPlane for z,t: 1 0 uint8 0 127
02:23:12 newPlane for z,t: 1 1 uint8 0 127
02:23:12 newPlane for z,t: 1 2 uint8 0 127
02:23:12 newPlane for z,t: 1 3 uint8 0 127
02:23:12 newPlane for z,t: 1 4 uint8 0 127
02:23:12 newPlane for z,t: 1 5 uint8 0 127
02:23:12 newPlane for z,t: 1 6 uint8 0 127
02:23:12 newPlane for z,t: 1 7 uint8 0 127
02:23:12 newPlane for z,t: 1 8 uint8 0 127
02:23:12 newPlane for z,t: 1 9 uint8 0 127
02:23:12 newPlane for z,t: 2 0 uint8 0 127
02:23:12 newPlane for z,t: 2 1 uint8 0 127
02:23:12 newPlane for z,t: 2 2 uint8 0 127
02:23:12 newPlane for z,t: 2 3 uint8 0 127
02:23:12 newPlane for z,t: 2 4 uint8 0 127
02:23:12 newPlane for z,t: 2 5 uint8 0 127
02:23:12 newPlane for z,t: 2 6 uint8 0 127
02:23:12 newPlane for z,t: 2 7 uint8 0 127
02:23:12 newPlane for z,t: 2 8 uint8 0 127
02:23:12 newPlane for z,t: 2 9 uint8 0 127
02:23:12 newPlane for z,t: 3 0 uint8 0 127
02:23:12 newPlane for z,t: 3 1 uint8 0 127
02:23:12 newPlane for z,t: 3 2 uint8 0 127
02:23:12 newPlane for z,t: 3 3 uint8 0 127
02:23:12 newPlane for z,t: 3 4 uint8 0 127
02:23:12 newPlane for z,t: 3 5 uint8 0 127
02:23:12 newPlane for z,t: 3 6 uint8 0 127
02:23:12 newPlane for z,t: 3 7 uint8 0 127
02:23:12 newPlane for z,t: 3 8 uint8 0 127
02:23:12 newPlane for z,t: 3 9 uint8 0 127
02:23:12 newPlane for z,t: 4 0 uint8 0 127
02:23:12 newPlane for z,t: 4 1 uint8 0 127
02:23:12 newPlane for z,t: 4 2 uint8 0 127
02:23:12 newPlane for z,t: 4 3 uint8 0 127
02:23:12 newPlane for z,t: 4 4 uint8 0 127
02:23:12 newPlane for z,t: 4 5 uint8 0 127
02:23:12 newPlane for z,t: 4 6 uint8 0 127
02:23:12 newPlane for z,t: 4 7 uint8 0 127
02:23:12 newPlane for z,t: 4 8 uint8 0 127
02:23:12 newPlane for z,t: 4 9 uint8 0 127
02:23:12 Deleting, please wait.
02:23:12 Error? False
02:23:12 3 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:12 training_user_2/Blitz-0-Ice.ThreadPool.Server-1/2026-07/10/02-22-06.178/ test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:12 1
02:23:12 training_user_2/Blitz-0-Ice.ThreadPool.Server-1/2026-07/10/02-22-06.178/ test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:12 Current group: training_group
02:23:12 Permissions: READ-ONLY (rwr---)
02:23:12 Project 1 Owner: training_user training_user
02:23:12 Project 0 Owner: training_user-2 training_user-2
02:23:12 Image: <_ImageWrapper id=3>
02:23:12 Image: <_ImageWrapper id=3> Group: training_group 3
02:23:12 Image: <_ImageWrapper id=3> Channel: 0
02:23:12 Channel: 1
02:23:12 Channel: 2
02:23:12
02:23:12
02:23:12 original_metadata
02:23:12 global_metadata
02:23:12 series_metadata
02:23:12
02:23:12 Plane at zct: 0 0 0
02:23:12 [[ 0 0 0 ... 253 254 255]
02:23:12 [ 0 0 0 ... 253 254 255]
02:23:12 [ 0 0 0 ... 253 254 255]
02:23:12 ...
02:23:12 [ 0 1 2 ... 253 254 255]
02:23:12 [ 0 1 2 ... 253 254 255]
02:23:12 [ 0 1 2 ... 253 254 255]]
02:23:12 shape: (512, 512)
02:23:12 min: 0 max: 255 pixel type: uint8
02:23:12
02:23:12 Z stack of tiles:
02:23:12 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:23:12 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:23:12 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:23:12 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:23:12 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:23:12
02:23:12 Hyper stack of planes:
02:23:12 plane zct: (2, 0, 0) min: 0 max: 255
02:23:12 plane zct: (2, 0, 1) min: 0 max: 255
02:23:12 plane zct: (2, 0, 2) min: 0 max: 255
02:23:12 plane zct: (2, 0, 3) min: 0 max: 255
02:23:12 plane zct: (2, 0, 4) min: 0 max: 255
02:23:12 plane zct: (2, 0, 5) min: 0 max: 255
02:23:12 plane zct: (2, 0, 6) min: 0 max: 255
02:23:12 plane zct: (2, 0, 7) min: 0 max: 255
02:23:12 plane zct: (2, 0, 8) min: 0 max: 255
02:23:12 plane zct: (2, 0, 9) min: 0 max: 255
02:23:12 plane zct: (2, 1, 0) min: 0 max: 255
02:23:12 plane zct: (2, 1, 1) min: 0 max: 255
02:23:12 plane zct: (2, 1, 2) min: 0 max: 255
02:23:12 plane zct: (2, 1, 3) min: 0 max: 255
02:23:12 plane zct: (2, 1, 4) min: 0 max: 255
02:23:12 plane zct: (2, 1, 5) min: 0 max: 255
02:23:12 plane zct: (2, 1, 6) min: 0 max: 255
02:23:12 plane zct: (2, 1, 7) min: 0 max: 255
02:23:12 plane zct: (2, 1, 8) min: 0 max: 255
02:23:12 plane zct: (2, 1, 9) min: 0 max: 255
02:23:12 plane zct: (2, 2, 0) min: 0 max: 255
02:23:12 plane zct: (2, 2, 1) min: 0 max: 255
02:23:12 plane zct: (2, 2, 2) min: 0 max: 255
02:23:12 plane zct: (2, 2, 3) min: 0 max: 255
02:23:12 plane zct: (2, 2, 4) min: 0 max: 255
02:23:12 plane zct: (2, 2, 5) min: 0 max: 255
02:23:12 plane zct: (2, 2, 6) min: 0 max: 255
02:23:12 plane zct: (2, 2, 7) min: 0 max: 255
02:23:12 plane zct: (2, 2, 8) min: 0 max: 255
02:23:12 plane zct: (2, 2, 9) min: 0 max: 255
02:23:12 plane zct: (3, 0, 0) min: 0 max: 255
02:23:12 plane zct: (3, 0, 1) min: 0 max: 255
02:23:12 plane zct: (3, 0, 2) min: 0 max: 255
02:23:12 plane zct: (3, 0, 3) min: 0 max: 255
02:23:12 plane zct: (3, 0, 4) min: 0 max: 255
02:23:12 plane zct: (3, 0, 5) min: 0 max: 255
02:23:12 plane zct: (3, 0, 6) min: 0 max: 255
02:23:12 plane zct: (3, 0, 7) min: 0 max: 255
02:23:12 plane zct: (3, 0, 8) min: 0 max: 255
02:23:12 plane zct: (3, 0, 9) min: 0 max: 255
02:23:12 plane zct: (3, 1, 0) min: 0 max: 255
02:23:12 plane zct: (3, 1, 1) min: 0 max: 255
02:23:12 plane zct: (3, 1, 2) min: 0 max: 255
02:23:12 plane zct: (3, 1, 3) min: 0 max: 255
02:23:12 plane zct: (3, 1, 4) min: 0 max: 255
02:23:12 plane zct: (3, 1, 5) min: 0 max: 255
02:23:12 plane zct: (3, 1, 6) min: 0 max: 255
02:23:12 plane zct: (3, 1, 7) min: 0 max: 255
02:23:12 plane zct: (3, 1, 8) min: 0 max: 255
02:23:12 plane zct: (3, 1, 9) min: 0 max: 255
02:23:12 plane zct: (3, 2, 0) min: 0 max: 255
02:23:12 plane zct: (3, 2, 1) min: 0 max: 255
02:23:12 plane zct: (3, 2, 2) min: 0 max: 255
02:23:12 plane zct: (3, 2, 3) min: 0 max: 255
02:23:12 plane zct: (3, 2, 4) min: 0 max: 255
02:23:12 plane zct: (3, 2, 5) min: 0 max: 255
02:23:12 plane zct: (3, 2, 6) min: 0 max: 255
02:23:12 plane zct: (3, 2, 7) min: 0 max: 255
02:23:12 plane zct: (3, 2, 8) min: 0 max: 255
02:23:12 plane zct: (3, 2, 9) min: 0 max: 255
02:23:12 plane zct: (4, 0, 0) min: 0 max: 255
02:23:12 plane zct: (4, 0, 1) min: 0 max: 255
02:23:12 plane zct: (4, 0, 2) min: 0 max: 255
02:23:12 plane zct: (4, 0, 3) min: 0 max: 255
02:23:12 plane zct: (4, 0, 4) min: 0 max: 255
02:23:12 plane zct: (4, 0, 5) min: 0 max: 255
02:23:12 plane zct: (4, 0, 6) min: 0 max: 255
02:23:12 plane zct: (4, 0, 7) min: 0 max: 255
02:23:12 plane zct: (4, 0, 8) min: 0 max: 255
02:23:12 plane zct: (4, 0, 9) min: 0 max: 255
02:23:12 plane zct: (4, 1, 0) min: 0 max: 255
02:23:12 plane zct: (4, 1, 1) min: 0 max: 255
02:23:12 plane zct: (4, 1, 2) min: 0 max: 255
02:23:12 plane zct: (4, 1, 3) min: 0 max: 255
02:23:12 plane zct: (4, 1, 4) min: 0 max: 255
02:23:12 plane zct: (4, 1, 5) min: 0 max: 255
02:23:12 plane zct: (4, 1, 6) min: 0 max: 255
02:23:12 plane zct: (4, 1, 7) min: 0 max: 255
02:23:12 plane zct: (4, 1, 8) min: 0 max: 255
02:23:12 plane zct: (4, 1, 9) min: 0 max: 255
02:23:12 plane zct: (4, 2, 0) min: 0 max: 255
02:23:12 plane zct: (4, 2, 1) min: 0 max: 255
02:23:12 plane zct: (4, 2, 2) min: 0 max: 255
02:23:12 plane zct: (4, 2, 3) min: 0 max: 255
02:23:12 plane zct: (4, 2, 4) min: 0 max: 255
02:23:12 plane zct: (4, 2, 5) min: 0 max: 255
02:23:12 plane zct: (4, 2, 6) min: 0 max: 255
02:23:12 plane zct: (4, 2, 7) min: 0 max: 255
02:23:12 plane zct: (4, 2, 8) min: 0 max: 255
02:23:12 plane zct: (4, 2, 9) min: 0 max: 255
02:23:12 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
02:23:19
02:23:19 List Projects:
02:23:19 ==================================================
02:23:19 Project:1 Name:"Project 1" (owner=training_user)
02:23:19 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
02:23:19 Image:1 Name:"test.fake" (owner=training_user)
02:23:19 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
02:23:19 Image:2 Name:"test.fake" (owner=training_user)
02:23:19
02:23:19 List orphaned Datasets:
02:23:19 ==================================================
02:23:19 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
02:23:19 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
02:23:19 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
02:23:19
02:23:19 Images in Dataset: 2
02:23:19 ==================================================
02:23:19 Image:2 Name:"test.fake" (owner=training_user)
02:23:19
02:23:19 Image:3
02:23:19 ==================================================
02:23:19 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:19 X: 512
02:23:19 Y: 512
02:23:19 Z: 5
02:23:19 C: 3
02:23:19 T: 10
02:23:19 Channel: 0 Color: (255, 0, 0)
02:23:19 Lookup table: None
02:23:19 Is reverse intensity? False
02:23:19 Channel: 1 Color: (0, 255, 0)
02:23:19 Lookup table: None
02:23:19 Is reverse intensity? False
02:23:19 Channel: 2 Color: (0, 0, 255)
02:23:19 Lookup table: None
02:23:19 Is reverse intensity? False
02:23:19 Pixel Size X: None
02:23:19
02:23:19 List Screens:
02:23:19 ==================================================
02:23:19 Screen:1 Name:"Screen" (owner=training_user)
02:23:19 Plate:1 Name:"Plate" (owner=training_user)
02:23:19 Plate:2 Name:"Plate Name 0" (owner=training_user)
02:23:19 Screen:2 Name:"Screen" (owner=training_user-2)
02:23:19
02:23:19 Plate:2
02:23:19 ==================================================
02:23:19
02:23:19 Number of fields: (0, 0)
02:23:19
02:23:19 Grid size: {'rows': 1, 'columns': 3}
02:23:19
02:23:19 Wells in Plate: Plate Name 0
02:23:19 Well: 0 0 Fields: 1
02:23:19 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 4
02:23:19 Well: 0 1 Fields: 1
02:23:19 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 6
02:23:19 Well: 0 2 Fields: 1
02:23:19 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 5
02:23:19 1 <class 'omero.model.MapAnnotationI'>
02:23:19 added by training_user
02:23:19 Image ID: 3
02:23:19 Annotation ID: 1
02:23:19 3
02:23:19 Channel rendering settings:
02:23:19 Name: 0
02:23:19 Color: FF0000
02:23:19 Active: True
02:23:19 Levels: 0.0 - 255.0
02:23:19 Name: 1
02:23:19 Color: 00FF00
02:23:19 Active: True
02:23:19 Levels: 0.0 - 255.0
02:23:19 Name: 2
02:23:19 Color: 0000FF
02:23:19 Active: True
02:23:19 Levels: 0.0 - 255.0
02:23:19 isGreyscaleRenderingModel: False
02:23:19 Default Z/T positions:
02:23:19 Z = 2, T = 0
02:23:19 Rendering Defs on Image:
02:23:19 ID: 3 (owner: training_user training_user)
02:23:19 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
02:23:19 ROI: ID: 2
02:23:19 Shape: id 21 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
02:23:19 Shape: id 22 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
02:23:19 ROI: ID: 3
02:23:19 Shape: id 23 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
02:23:19 ROI: ID: 4
02:23:19 Shape: id 24 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
02:23:19 ROI: ID: 5
02:23:19 Shape: id 25 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
02:23:19 ROI: ID: 6
02:23:19 <class 'omero.model.PolygonI'> Not supported by this code
02:23:19 Shape: id 26 theT 0 theZ 2 textValue test-Polygon
02:23:19 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
02:23:19 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
02:23:19 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
02:23:19 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
02:23:19 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
02:23:19 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
02:23:19 Removing Shape from ROI...
02:23:19 Deleting ROI: 7
02:23:19 Table Columns:
02:23:19 Uid
02:23:19 MyStringColumnInit
02:23:19 Row count: 10
02:23:19
02:23:19 Get All Data for rows: [3, 5, 7]
02:23:19 Data for Column: Uid
02:23:19 1
02:23:19 2
02:23:19 3
02:23:19 4
02:23:19 5
02:23:19 6
02:23:19 7
02:23:19 8
02:23:19 9
02:23:19 10
02:23:19 Data for Column: MyStringColumnInit
02:23:19 one
02:23:19 two
02:23:19 three
02:23:19 four
02:23:19 five
02:23:19 six
02:23:19 seven
02:23:19 eight
02:23:19 nine
02:23:19 ten
02:23:19
02:23:19 Get All Data for rows with slice: [3, 5, 7]
02:23:19 Data for Column: Uid
02:23:19 4
02:23:19 6
02:23:19 8
02:23:19 Data for Column: MyStringColumnInit
02:23:19 four
02:23:19 six
02:23:19 eight
02:23:19
02:23:19 Get Data for cols: [1] and between rows: 3 - 7
02:23:19 Data for Column: MyStringColumnInit
02:23:19 four
02:23:19 five
02:23:19 six
02:23:19 seven
02:23:19
02:23:19 Get Data for cols: [1] and between rows: 3 - 7 with slice
02:23:19 Data for Column: MyStringColumnInit
02:23:19 four
02:23:19 five
02:23:19 six
02:23:19 seven
02:23:19 Query Results for Column: Uid
02:23:19 3
02:23:19 4
02:23:19 5
02:23:19 6
02:23:19 7
02:23:19 8
02:23:19 Query Results for Column: MyStringColumnInit
02:23:19 three
02:23:19 four
02:23:19 five
02:23:19 six
02:23:19 seven
02:23:19 eight
02:23:19 Opened table with row-count: 10
02:23:19 New dataset, Id: 7
02:23:19 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
02:23:19 5 <class 'omero.model.TagAnnotationI'> added by training_user
02:23:19 Tag value: New Tag
02:23:19 6 <class 'omero.model.MapAnnotationI'> added by training_user
02:23:19
02:23:19 Creating an OriginalFile and FileAnnotation
02:23:19 Attaching FileAnnotation to Dataset: File ID: 7 , README.txt Size: 15
02:23:19
02:23:19 Annotations on Dataset: New Dataset
02:23:19 File ID: 131 README.txt Size: 15
02:23:19
02:23:19 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
02:23:19 File downloaded!
02:23:19 7 README.txt
02:23:19 Found Annotation with namespace: imperial.training.demo
02:23:19 Plane: 0 0 0
02:23:19 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
02:23:19 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
02:23:19
02:23:19 List Datasets:
02:23:19 ID: 8 Name: MyDataset
02:23:19 ID: 9 Name: MyDataset
02:23:19 ID: 10 Name: MyDataset
02:23:19
02:23:19 List Tags:
02:23:19 ID: 8 Text: MyTag Desc: MyTag 0
02:23:19 ID: 9 Text: MyTag Desc: MyTag 1
02:23:19 ID: 10 Text: MyTag Desc: MyTag 2
02:23:19 New dataset, Id: 11
02:23:19 New dataset 2, Id: 12
02:23:19 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:19 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
02:23:19 [[ 0 0 0 ... 102 103 104]
02:23:19 [ 0 0 0 ... 102 103 104]
02:23:19 [ 0 0 0 ... 102 103 104]
02:23:19 ...
02:23:19 [ 5 6 7 ... 102 103 104]
02:23:19 [ 5 6 7 ... 102 103 104]
02:23:19 [ 5 6 7 ... 102 103 104]]
02:23:19 shape: (100, 100)
02:23:19 min: 0 max: 104 pixel type: uint8
02:23:19 Average : 53.9125
02:23:19 Getting data for T, tile: 0 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 1 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 2 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 3 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 4 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 5 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 6 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 7 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 8 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 9 (256, 0, 10, 512)
02:23:19 kymograph_data (512, 100)
02:23:19 Attaching kymograph.png to image
02:23:19 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:23:19 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
02:23:19 [[ 0 0 0 ... 102 103 104]
02:23:19 [ 0 0 0 ... 102 103 104]
02:23:19 [ 0 0 0 ... 102 103 104]
02:23:19 ...
02:23:19 [ 5 6 7 ... 102 103 104]
02:23:19 [ 5 6 7 ... 102 103 104]
02:23:19 [ 5 6 7 ... 102 103 104]]
02:23:19 shape: (100, 100)
02:23:19 min: 0 max: 104 pixel type: uint8
02:23:19 Average : 53.9125
02:23:19 Getting data for T, tile: 0 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 1 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 2 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 3 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 4 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 5 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 6 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 7 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 8 (256, 0, 10, 512)
02:23:19 Getting data for T, tile: 9 (256, 0, 10, 512)
02:23:19 kymograph_data (512, 100)
02:23:19 Attaching kymograph.png to image
02:23:19 No file downloaded. Project not rated.
02:23:19 New image, Id: 12
02:23:19 Starting at: http://nginx/web/api/
02:23:19 CSRF token SCkH2bUbMEsT3bjcwo1EPruxRK6RZVHc
02:23:19 Servers:
02:23:19 -id: 1
02:23:19 name: omero
02:23:19 host: omero
02:23:19 port: 4064
02:23:19 -id: 2
02:23:19 name: testintegration
02:23:19 host: testintegration
02:23:19 port: 14064
02:23:19 eventContext {'sessionId': 56, 'sessionUuid': '17af403f-c3de-46d9-82cb-73cd77add0fc', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
02:23:19 Projects:
02:23:19 2 Project 0
02:23:19 3 Project 0
02:23:19 Created Project: 6 API TEST foo
02:23:19 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/6/datasets/'}}
02:23:20 !! 07/10/26 02:23:20.093 error: communicator not destroyed during global destruction.+ deactivate
02:23:20 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
02:23:20 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:23:20 + export PATH
02:23:20 + unset _OLD_VIRTUAL_PATH
02:23:20 + '[' -n '' ']'
02:23:20 + hash -r
02:23:20 + '[' -n '' ']'
02:23:20 + unset VIRTUAL_ENV
02:23:20 + unset VIRTUAL_ENV_PROMPT
02:23:20 + '[' '!' '' = nondestructive ']'
02:23:20 + unset -f deactivate
02:23:20 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
02:23:20 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
02:23:22 Note: Some input files use unchecked or unsafe operations.
02:23:22 Note: Recompile with -Xlint:unchecked for details.
02:23:22 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
02:23:25 omero.cmd.Delete2Response@5ed731d0
02:23:25 omero.cmd.Delete2Response@58e6d4b8
02:23:26 one [class java.lang.String] 1.0 [class java.lang.Double]
02:23:26 two [class java.lang.String] 2.0 [class java.lang.Double]
02:23:26 three [class java.lang.String] 3.0 [class java.lang.Double]
02:23:26 -1.0
02:23:26 0
02:23:26 1
02:23:26 2
02:23:28 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
02:23:28 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:23:28 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:23:28 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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02:23:28 239 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 240 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 241 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 242 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 243 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 244 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 245 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 246 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:23:28 Project:1 Project 1
02:23:28 dataset:1 Dataset 1-1
02:23:28 dataset:2 Dataset 1-2
02:23:28 dataset:7 New Dataset
02:23:28 Project:2 Project 0
02:23:28 image:12 New Image
02:23:28 image:2 test.fake
02:23:28 image:13 newImageFrom3
02:23:28 5
02:23:28 10
02:23:28 3
02:23:28 512
02:23:28 512
02:23:28 screen:1 Screen
02:23:28 plate:2 Plate Name 0
02:23:28 plate:1 Plate
02:23:28 screen:2 Screen
02:23:28 well:2
02:23:28 well:3
02:23:28 well:1
02:23:28 plate:3
02:23:28 plate:1
02:23:28 plate:2
02:23:28
02:23:28 List Datasets:
02:23:28 ID: 8 Name: MyDataset
02:23:28 ID: 9 Name: MyDataset
02:23:28 ID: 10 Name: MyDataset
02:23:28 ID: 14 Name: MyDataset
02:23:28 ID: 15 Name: MyDataset
02:23:28 ID: 16 Name: MyDataset
02:23:29
02:23:29 List Tags:
02:23:29 ID: 16 NS: omero.training.demo
02:23:29 ID: 17 NS: omero.training.demo
02:23:29 ID: 18 NS: omero.training.demo
02:23:29 Dataset:8 MyDataset
02:23:29 Dataset:14 MyDataset
02:23:29 Dataset:4 Orphaned dataset 2
02:23:29 Dataset:15 MyDataset
02:23:29 Dataset:9 MyDataset
02:23:29 Project:1 Project 1
02:23:29 Dataset:11 New Dataset
02:23:29 Dataset:3 Orphaned dataset 1
02:23:29 Dataset:13 FileAnnotationDelete
02:23:29 Dataset:16 MyDataset
02:23:29 Dataset:10 MyDataset
02:23:29 Dataset:12 New Dataset2
02:23:29 Size:0
02:23:29 512 512
02:23:29 9
02:23:29 9
02:23:29 1
02:23:30 Logged in as ladmin_user
02:23:31 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
02:23:31 Added 'ladmin_user's tag' to dataset MyDataset as admin.
02:23:31 Finished: SUCCESS
