06:00:00 Started by user devspace
06:00:00 Running as SYSTEM
06:00:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
06:00:00 [OMERO-training] $ /bin/bash -xe /tmp/jenkins13535317243062079858.sh
06:00:00 + rm -rf /home/omero/workspace/OMERO-training/.venv3
06:00:00 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
06:00:03 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
06:00:03 ++ deactivate nondestructive
06:00:03 ++ '[' -n '' ']'
06:00:03 ++ '[' -n '' ']'
06:00:03 ++ hash -r
06:00:03 ++ '[' -n '' ']'
06:00:03 ++ unset VIRTUAL_ENV
06:00:03 ++ unset VIRTUAL_ENV_PROMPT
06:00:03 ++ '[' '!' nondestructive = nondestructive ']'
06:00:03 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
06:00:03 ++ export VIRTUAL_ENV
06:00:03 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:03 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:03 ++ export PATH
06:00:03 ++ '[' -n '' ']'
06:00:03 ++ '[' -z '' ']'
06:00:03 ++ _OLD_VIRTUAL_PS1=
06:00:03 ++ PS1='(.venv3) '
06:00:03 ++ export PS1
06:00:03 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
06:00:03 ++ export VIRTUAL_ENV_PROMPT
06:00:03 ++ hash -r
06:00:03 + pip install -U pip setuptools
06:00:04 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
06:00:04 Collecting pip
06:00:04 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
06:00:04 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
06:00:04 Collecting setuptools
06:00:04 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
06:00:04 Installing collected packages: setuptools, pip
06:00:04 Attempting uninstall: setuptools
06:00:04 Found existing installation: setuptools 65.5.1
06:00:04 Uninstalling setuptools-65.5.1:
06:00:04 Successfully uninstalled setuptools-65.5.1
06:00:05 Attempting uninstall: pip
06:00:05 Found existing installation: pip 22.3.1
06:00:05 Uninstalling pip-22.3.1:
06:00:05 Successfully uninstalled pip-22.3.1
06:00:06 Successfully installed pip-25.3 setuptools-80.9.0
06:00:06 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
06:00:07 Collecting zeroc-ice==3.6.5
06:00:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
06:00:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.0 MB/s 0:00:01
06:00:09 Installing collected packages: zeroc-ice
06:00:10 Successfully installed zeroc-ice-3.6.5
06:00:10 + pip install markdown
06:00:10 Collecting markdown
06:00:10 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
06:00:10 Using cached markdown-3.10-py3-none-any.whl (107 kB)
06:00:10 Installing collected packages: markdown
06:00:10 Successfully installed markdown-3.10
06:00:10 + pip install mox3 pytest 'pytest-xdist<2'
06:00:11 Collecting mox3
06:00:11 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
06:00:11 Collecting pytest
06:00:11 Using cached pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB)
06:00:11 Collecting pytest-xdist<2
06:00:11 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
06:00:11 Collecting execnet>=1.1 (from pytest-xdist<2)
06:00:11 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
06:00:11 Collecting pytest-forked (from pytest-xdist<2)
06:00:11 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
06:00:11 Collecting six (from pytest-xdist<2)
06:00:11 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
06:00:11 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
06:00:11 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
06:00:11 Collecting fixtures>=3.0.0 (from mox3)
06:00:11 Using cached fixtures-4.2.6-py3-none-any.whl.metadata (22 kB)
06:00:11 Collecting iniconfig>=1.0.1 (from pytest)
06:00:11 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
06:00:11 Collecting packaging>=22 (from pytest)
06:00:11 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
06:00:11 Collecting pluggy<2,>=1.5 (from pytest)
06:00:11 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
06:00:11 Collecting pygments>=2.7.2 (from pytest)
06:00:11 Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
06:00:11 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
06:00:11 Collecting py (from pytest-forked->pytest-xdist<2)
06:00:11 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
06:00:11 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
06:00:11 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
06:00:11 Using cached pytest-9.0.2-py3-none-any.whl (374 kB)
06:00:11 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
06:00:11 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
06:00:11 Using cached fixtures-4.2.6-py3-none-any.whl (66 kB)
06:00:11 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
06:00:11 Using cached packaging-25.0-py3-none-any.whl (66 kB)
06:00:11 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
06:00:11 Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB)
06:00:11 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
06:00:11 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
06:00:11 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
06:00:11 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
06:00:12
06:00:12 Successfully installed execnet-2.1.2 fixtures-4.2.6 iniconfig-2.3.0 mox3-1.1.0 packaging-25.0 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.19.2 pytest-9.0.2 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
06:00:13 + pip install tables
06:00:13 Collecting tables
06:00:13 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
06:00:13 Collecting numpy>=1.20.0 (from tables)
06:00:13 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
06:00:13 Collecting numexpr>=2.6.2 (from tables)
06:00:13 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
06:00:13 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
06:00:13 Collecting py-cpuinfo (from tables)
06:00:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
06:00:13 Collecting blosc2>=2.3.0 (from tables)
06:00:13 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
06:00:14 Collecting typing-extensions>=4.4.0 (from tables)
06:00:14 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
06:00:14 Collecting ndindex (from blosc2>=2.3.0->tables)
06:00:14 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
06:00:14 Collecting msgpack (from blosc2>=2.3.0->tables)
06:00:14 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
06:00:14 Collecting platformdirs (from blosc2>=2.3.0->tables)
06:00:14 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
06:00:14 Collecting requests (from blosc2>=2.3.0->tables)
06:00:14 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
06:00:14 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
06:00:14 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
06:00:14 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
06:00:14 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
06:00:14 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
06:00:14 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
06:00:14 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
06:00:14 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
06:00:14 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
06:00:14 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
06:00:14 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
06:00:14 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
06:00:14 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
06:00:14 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
06:00:14 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
06:00:14 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
06:00:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
06:00:14 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
06:00:14 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
06:00:14 Using cached idna-3.11-py3-none-any.whl (71 kB)
06:00:14 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
06:00:14 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
06:00:14 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
06:00:17
06:00:17 Successfully installed blosc2-3.12.2 certifi-2025.11.12 charset_normalizer-3.4.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
06:00:18 + pip install jinja2
06:00:18 Collecting jinja2
06:00:18 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
06:00:18 Collecting MarkupSafe>=2.0 (from jinja2)
06:00:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
06:00:18 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
06:00:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
06:00:18 Installing collected packages: MarkupSafe, jinja2
06:00:18
06:00:18 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
06:00:18 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
06:00:18 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 2
06:00:20 Copied 2 artifacts from "OMERO-build" build number 2
06:00:20 Copied 2 artifacts from "OMERO-build-build" build number 5
06:00:20 [OMERO-training] $ /bin/bash -xe /tmp/jenkins10359594744497362574.sh
06:00:20 + source /home/settings.env
06:00:20 ++ OMERO_DB_HOST=pg
06:00:20 ++ OMERO_DB_USER=postgres
06:00:20 ++ OMERO_DB_PASS=
06:00:20 ++ OMERO_ROOT_PASS=omero
06:00:20 ++ OMERO_DATA_DIR=/OMERO
06:00:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:00:20 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
06:00:20 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
06:00:20 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
06:00:20 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
06:00:20 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
06:00:20 ++ ls openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
06:00:20 + ZIP=openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
06:00:20 + DIST=openmicroscopy-5.6.3-576-122592012b-ice36-b2
06:00:20 + unzip -n openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
06:00:20 Archive: openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.classpath-template
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/Pull_Request_Template.md
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/workflows/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/workflows/docker_build.yml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/workflows/release.yml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/workflows/source_build.yml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.github/workflows/update.yaml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.mailmap
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/.project
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/CMakeLists.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/CONTRIBUTING.md
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/Dockerfile
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/LICENSE.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/README.md
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/SUPPORT.md
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/build.bat
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/build.py
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/build.xml
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/.classpath
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/.project
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/excludebugs.xml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/global.xml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/hibernate.xml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/lifecycle.xml
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/version.xml
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/scripts/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/scripts/parse_version
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/scripts/source-archive.py
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/build.xml
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/README.md
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/build.xml
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/plugins/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/plugins/robot.py
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/robot.template
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/annotation.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/login.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/thumbs.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/tree.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/web/webadmin.txt
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/resources/well_sample_posXY.py
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/robot_setup.sh
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/testcases/
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/testcases/web/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tests/ui/testcases/web/annotate_test.robot
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/chgrp/
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/chmod/
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/chown/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/delete/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/gateway/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/thumbnail/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/bin/
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/build.xml
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/createSession.py
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/load.omero
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/projection_1.py
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/submit.omero
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/examples/upload.omero
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/manualtests/
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/manualtests/README.txt
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06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/setup.py
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/__init__.py
06:00:20 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/conftest.py
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/__init__.py
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/client_ctors.cfg
06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/clitest/
06:00:20 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/clitest/__init__.py
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/scriptstest/
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06:00:20 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroPy/test/integration/tablestest/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/3-3-2_rgb.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/janelia/pup_br.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/inferno.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/viridis.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/16_colors.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/red-green.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/seaborn/mako.lut
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/turbo.lut
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/cyan_hot.lut
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/README.txt
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/Makefile
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/enums.py
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/
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06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/
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06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
06:00:21 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/views.sql
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/test.xml
06:00:21 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/update_dependencies.sh
06:00:21 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/gitversion.xml
06:00:21 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/cmake/GitVersion.cmake
06:00:21 + rm -f openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
06:00:21 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-576-122592012b-ice36-b2 /home/omero/workspace/OMERO-training/openmicroscopy
06:00:21 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
06:00:21 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
06:00:21 ++ ls OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
06:00:21 + ZIP=OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
06:00:21 + DIST=OMERO.server-5.6.3-576-122592012b-ice36-b2
06:00:21 + unzip -n OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
06:00:21 Archive: OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/grid/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/profiles/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/error/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/janelia/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/matplotlib/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/ncsa_paledit/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/seaborn/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/wcif/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/analysis_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/annotation_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/export_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/figure_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/import_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/util_scripts/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/var/
06:00:21 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/var/tmp/
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/LICENSE.txt
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/backup.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/mail-senders.example
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/mail-server.example
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/build.properties
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/env.bat
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/env.sh
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/hibernate.properties
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/ice.config
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-cli.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-indexing-cli.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-indexing.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/mime.types
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/node1.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/node2.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/omero.properties
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/profiles/psql
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/rollover.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/Windows.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/error/maintainance.html
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/README
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/default.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/templates.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/windefault.xml
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/ice.config
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/internal.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/master.cfg
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/robot.template
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/testdropbox.config
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/history.rst
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/OMEZarrReader.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/accessors-smart.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/activation.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aggdesigner-algorithm.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aircompressor.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/antlr.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aopalliance.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/apiguardian-api.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/asm.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/avatica-core.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/avatica-metrics.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-core.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-kms.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-s3.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/base.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-anim.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-awt-util.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-bridge.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-codec.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-constants.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-css.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-dom.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-ext.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-gvt.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-i18n.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-parser.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-script.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-shared-resources.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-svg-dom.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-svggen.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-transcoder.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-util.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-xml.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/btm.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/calcite-core.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/calcite-linq4j.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/cdm-core.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/checker-qual.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-beanutils.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-codec.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-collections.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-collections4.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-compiler.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-dbcp2.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-io.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-lang.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-lang3.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-logging.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-math.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-math3.jar
06:00:21 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-pool2.jar
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06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-common.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-gateway.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-model.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-renderer.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-romio.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/omero-server.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/pdfbox.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/perf4j.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/postgresql.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/proj4j.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/protobuf-java.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/quartz.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/re2j.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/reflectasm.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/serializer.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/sketches-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/slf4j-api.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/snakeyaml.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/solr-analysis-extras.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/solr-commons-csv.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/solr-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/solr-solrj.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/specification.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-aop.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-beans.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-context-support.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-context.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-expression.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-jdbc.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-jms.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-ldap-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-messaging.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-orm.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-security-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-security-ldap.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-tx.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/sqlite-jdbc.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/subethasmtp.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/turbojpeg.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/uzaygezen-core.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xalan.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xercesImpl.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xml-apis-ext.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xml-apis.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xmlgraphics-commons.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xmpcore.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xpp3.jar
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/README
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/agpl.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/antlr.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/apache-v1.1.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/apache-v2.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/asm.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/bouncy_castle_license.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/bsd.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/cddl-v1.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/cpl-v10.html
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/crystalclear.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/django.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/dom4j.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/epl-v1.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/fbsd.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/freemarker.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gpl-v2.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gpl.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gtest.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/iconsweets_license.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jamon.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jmock.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jquery.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jtidy.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-3.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v2.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v2.1.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v3.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/matplotlib.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/mit.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/mpl-v1_0.htm
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/npl-1_1.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/path.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/pil.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/postgresql.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/psf-v2.0.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/psf-v2.5.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/scons.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/slf4j.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/tablelayout.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/which.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/zlib-libpng.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/zpl-v2.1.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/README.txt
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/Makefile
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/current.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/enums.py
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/OMERO3A__9.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__10.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/OMERO3A__1.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
06:00:23 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/views.sql
06:00:23 + rm -f OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
06:00:23 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-576-122592012b-ice36-b2 /home/omero/workspace/OMERO-training/OMERO.server
06:00:23 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
06:00:23 ++ deactivate nondestructive
06:00:23 ++ '[' -n '' ']'
06:00:23 ++ '[' -n '' ']'
06:00:23 ++ hash -r
06:00:23 ++ '[' -n '' ']'
06:00:23 ++ unset VIRTUAL_ENV
06:00:23 ++ unset VIRTUAL_ENV_PROMPT
06:00:23 ++ '[' '!' nondestructive = nondestructive ']'
06:00:23 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
06:00:23 ++ export VIRTUAL_ENV
06:00:23 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:23 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:23 ++ export PATH
06:00:23 ++ '[' -n '' ']'
06:00:23 ++ '[' -z '' ']'
06:00:23 ++ _OLD_VIRTUAL_PS1=
06:00:23 ++ PS1='(.venv3) '
06:00:23 ++ export PS1
06:00:23 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
06:00:23 ++ export VIRTUAL_ENV_PROMPT
06:00:23 ++ hash -r
06:00:23 + for x in *.gz
06:00:23 + pip install omero_dropbox-5.7.1.dev0.tar.gz
06:00:23 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
06:00:23 Installing build dependencies: started
06:00:24 Installing build dependencies: finished with status 'done'
06:00:24 Getting requirements to build wheel: started
06:00:24 Getting requirements to build wheel: finished with status 'done'
06:00:24 Preparing metadata (pyproject.toml): started
06:00:25 Preparing metadata (pyproject.toml): finished with status 'done'
06:00:25 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
06:00:25 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
06:00:25 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
06:00:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
06:00:25 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
06:00:25 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
06:00:25 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
06:00:25 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
06:00:25 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
06:00:25 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
06:00:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
06:00:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
06:00:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
06:00:25 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
06:00:25 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
06:00:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
06:00:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
06:00:25 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
06:00:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
06:00:25 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
06:00:25 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
06:00:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
06:00:25 Using cached future-1.0.0-py3-none-any.whl (491 kB)
06:00:25 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
06:00:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
06:00:25 Building wheels for collected packages: omero-dropbox
06:00:25 Building wheel for omero-dropbox (pyproject.toml): started
06:00:25 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
06:00:25 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=e629a37c61bee6fa8f5bda9b7ed967f4597d135b3416f99fa162e3e287bd548d
06:00:25 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
06:00:25 Successfully built omero-dropbox
06:00:25 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
06:00:28
06:00:28 Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
06:00:28 + for x in *.gz
06:00:28 + pip install omero_marshal-0.9.2.dev0.tar.gz
06:00:28 Processing ./omero_marshal-0.9.2.dev0.tar.gz
06:00:28 Installing build dependencies: started
06:00:29 Installing build dependencies: finished with status 'done'
06:00:29 Getting requirements to build wheel: started
06:00:30 Getting requirements to build wheel: finished with status 'done'
06:00:30 Preparing metadata (pyproject.toml): started
06:00:30 Preparing metadata (pyproject.toml): finished with status 'done'
06:00:30 Building wheels for collected packages: omero_marshal
06:00:30 Building wheel for omero_marshal (pyproject.toml): started
06:00:30 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
06:00:30 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=9dd1cddce332dc75c19d61bdd380d9d4f6dff75784ae3b6b5341828865496e1c
06:00:30 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
06:00:30 Successfully built omero_marshal
06:00:30 Installing collected packages: omero_marshal
06:00:30 Successfully installed omero_marshal-0.9.2.dev0
06:00:30 + for x in *.gz
06:00:30 + pip install omero_py-5.22.0.dev0.tar.gz
06:00:31 Processing ./omero_py-5.22.0.dev0.tar.gz
06:00:31 Installing build dependencies: started
06:00:32 Installing build dependencies: finished with status 'done'
06:00:32 Getting requirements to build wheel: started
06:00:32 Getting requirements to build wheel: finished with status 'done'
06:00:32 Preparing metadata (pyproject.toml): started
06:00:32 Preparing metadata (pyproject.toml): finished with status 'done'
06:00:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
06:00:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
06:00:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
06:00:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
06:00:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
06:00:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
06:00:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
06:00:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
06:00:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
06:00:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
06:00:32 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
06:00:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
06:00:32 Building wheels for collected packages: omero-py
06:00:32 Building wheel for omero-py (pyproject.toml): started
06:00:33 Building wheel for omero-py (pyproject.toml): finished with status 'done'
06:00:33 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=f1559fe3229a944f9cfedfba99c35a9687092731b6d343499b68fdb2a5223289
06:00:33 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
06:00:33 Successfully built omero-py
06:00:33 Installing collected packages: omero-py
06:00:33 Attempting uninstall: omero-py
06:00:33 Found existing installation: omero-py 5.21.3
06:00:33 Uninstalling omero-py-5.21.3:
06:00:34 Successfully uninstalled omero-py-5.21.3
06:00:35 Successfully installed omero-py-5.22.0.dev0
06:00:36 + for x in *.gz
06:00:36 + pip install omero_scripts-5.9.2.dev0.tar.gz
06:00:36 Processing ./omero_scripts-5.9.2.dev0.tar.gz
06:00:36 Installing build dependencies: started
06:00:40 Installing build dependencies: finished with status 'done'
06:00:40 Getting requirements to build wheel: started
06:00:40 Getting requirements to build wheel: finished with status 'done'
06:00:40 Preparing metadata (pyproject.toml): started
06:00:40 Preparing metadata (pyproject.toml): finished with status 'done'
06:00:40 Building wheels for collected packages: omero-scripts
06:00:40 Building wheel for omero-scripts (pyproject.toml): started
06:00:40 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
06:00:40 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=85dceb333def2f7681856ab57cce58db28f74b2a8963aa15dbab239265325e27
06:00:40 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
06:00:40 Successfully built omero-scripts
06:00:41 Installing collected packages: omero-scripts
06:00:41 Successfully installed omero-scripts-5.9.2.dev0
06:00:41 + for x in *.gz
06:00:41 + pip install omero_web-5.30.1.dev0.tar.gz
06:00:41 Processing ./omero_web-5.30.1.dev0.tar.gz
06:00:41 Installing build dependencies: started
06:00:42 Installing build dependencies: finished with status 'done'
06:00:42 Getting requirements to build wheel: started
06:00:42 Getting requirements to build wheel: finished with status 'done'
06:00:42 Preparing metadata (pyproject.toml): started
06:00:43 Preparing metadata (pyproject.toml): finished with status 'done'
06:00:43 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
06:00:43 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
06:00:43 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
06:00:43 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
06:00:43 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
06:00:43 Collecting django-pipeline (from omero-web==5.30.1.dev0)
06:00:43 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
06:00:43 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
06:00:43 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
06:00:43 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
06:00:43 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
06:00:43 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
06:00:43 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
06:00:43 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
06:00:43 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
06:00:43 Collecting pytz (from omero-web==5.30.1.dev0)
06:00:43 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
06:00:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
06:00:43 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
06:00:43 Collecting importlib-resources (from omero-web==5.30.1.dev0)
06:00:43 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
06:00:43 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
06:00:43 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
06:00:43 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
06:00:43 Using cached sqlparse-0.5.4-py3-none-any.whl.metadata (4.7 kB)
06:00:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
06:00:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
06:00:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
06:00:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
06:00:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
06:00:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
06:00:43 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
06:00:43 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
06:00:43 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
06:00:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
06:00:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
06:00:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
06:00:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
06:00:43 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
06:00:43 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
06:00:43 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
06:00:43 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
06:00:43 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
06:00:43 Using cached sqlparse-0.5.4-py3-none-any.whl (45 kB)
06:00:43 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
06:00:43 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
06:00:43 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
06:00:43 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
06:00:43 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
06:00:43 Building wheels for collected packages: omero-web
06:00:43 Building wheel for omero-web (pyproject.toml): started
06:00:44 Building wheel for omero-web (pyproject.toml): finished with status 'done'
06:00:44 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819190 sha256=cec7b2b1de5ad327a9f364d8229f3af1aa4c1101c68269e235d01295099b9ef0
06:00:44 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
06:00:44 Successfully built omero-web
06:00:44 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
06:00:47
06:00:47 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.4 wheel-0.45.1 whitenoise-6.11.0
06:00:47 + cd /home/omero/workspace/OMERO-training/OMERO.server
06:00:47 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
06:00:47 + HOSTNAME=bad8002a5571
06:00:47 + PORT=4064
06:00:47 + WEBHOST=http://nginx/web
06:00:47 + SERVER_NAME=omero
06:00:47 + ROOT_PASSWORD=omero
06:00:47 + GROUP_NAME=training_group
06:00:47 + GROUP_NAME_2=training_group-2
06:00:47 + USER_NAME=training_user
06:00:47 + USER_NAME_2=training_user-2
06:00:47 + LIGHTADMIN_USER_NAME=ladmin_user
06:00:47 + USER_PASSWORD=ome
06:00:47 + CONFIG_FILENAME=training_ice.config
06:00:47 + omero login root@bad8002a5571:4064 -w omero
06:00:48 Created session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:48 + omero group add training_group --type read-only --ignore-existing
06:00:49 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:49 Group exists: training_group (id=3)
06:00:49 + omero group add training_group-2 --type read-only --ignore-existing
06:00:50 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:50 Group exists: training_group-2 (id=4)
06:00:50 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
06:00:51 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:51 User exists: training_user (id=2)
06:00:51 + omero user joingroup --name training_user --group-name training_group training_group-2
06:00:52 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:52 2 is already in group 3
06:00:52 2 is already in group 4
06:00:52 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
06:00:53 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:53 User exists: training_user-2 (id=3)
06:00:53 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
06:00:53 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:54 3 is already in group 3
06:00:54 3 is already in group 4
06:00:54 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
06:00:54 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:54 User exists: ladmin_user (id=4)
06:00:55 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
06:00:55 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:55 4 is already in group 3
06:00:55 4 is already in group 4
06:00:55 ++ omero user info ladmin_user --style plain
06:00:55 ++ cut -d, -f1
06:00:56 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:56 + id=4
06:00:56 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
06:00:57 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
06:00:57 Experimenter:4
06:00:57 + omero logout
06:00:58 + touch test.fake
06:00:58 + omero login training_user@bad8002a5571:4064 -w ome -g training_group
06:00:59 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:00:59 + nProjects=1
06:00:59 + nDatasets=2
06:00:59 + echo 'Creating projects and datasets'
06:00:59 Creating projects and datasets
06:00:59 + (( i=1 ))
06:00:59 + (( i<=1 ))
06:00:59 ++ omero obj new Project 'name=Project 1'
06:01:00 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:00 + project=Project:7
06:01:00 + (( j=1 ))
06:01:00 + (( j<=2 ))
06:01:00 ++ omero obj new Dataset 'name=Dataset 1-1'
06:01:01 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:01 + dataset=Dataset:13
06:01:01 + omero obj new ProjectDatasetLink parent=Project:7 child=Dataset:13
06:01:02 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:02 ProjectDatasetLink:4
06:01:02 + echo 'Importing image into dataset'
06:01:02 Importing image into dataset
06:01:02 + omero import -d Dataset:13 test.fake --debug ERROR
06:01:03 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:03 2025-12-18 06:01:03,573 274 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
06:01:03 2025-12-18 06:01:03,589 290 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
06:01:05 Image:13
06:01:05 Other imported objects:
06:01:05 Fileset:7
06:01:05
06:01:05 ==> Summary
06:01:05 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.994
06:01:05 + (( j++ ))
06:01:05 + (( j<=2 ))
06:01:05 ++ omero obj new Dataset 'name=Dataset 1-2'
06:01:06 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:06 + dataset=Dataset:14
06:01:06 + omero obj new ProjectDatasetLink parent=Project:7 child=Dataset:14
06:01:07 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:07 ProjectDatasetLink:5
06:01:07 + echo 'Importing image into dataset'
06:01:07 Importing image into dataset
06:01:07 + omero import -d Dataset:14 test.fake --debug ERROR
06:01:08 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:09 2025-12-18 06:01:09,063 261 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
06:01:09 2025-12-18 06:01:09,079 277 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
06:01:11 Image:14
06:01:11 Other imported objects:
06:01:11 Fileset:8
06:01:11
06:01:11 ==> Summary
06:01:11 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.893
06:01:11 + (( j++ ))
06:01:11 + (( j<=2 ))
06:01:11 + (( i++ ))
06:01:11 + (( i<=1 ))
06:01:11 + (( j=1 ))
06:01:11 + (( j<=2 ))
06:01:11 + omero obj new Dataset 'name=Orphaned dataset 1'
06:01:12 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:12 Dataset:15
06:01:12 + (( j++ ))
06:01:12 + (( j<=2 ))
06:01:12 + omero obj new Dataset 'name=Orphaned dataset 2'
06:01:12 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:12 Dataset:16
06:01:13 + (( j++ ))
06:01:13 + (( j<=2 ))
06:01:13 + echo 'Importing image file'
06:01:13 Importing image file
06:01:13 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
06:01:13 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
06:01:17 ++ sed -n -e 's/^Image://p' image_import.log
06:01:17 + imageid=15
06:01:17 ++ omero obj new MapAnnotation
06:01:17 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:18 + MAP=MapAnnotation:14
06:01:18 + omero obj map-set MapAnnotation:14 mapValue testkey testvalue
06:01:18 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:19 MapAnnotation:14
06:01:19 + omero obj new ImageAnnotationLink parent=Image:15 child=MapAnnotation:14
06:01:19 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:19 ImageAnnotationLink:4
06:01:20 ++ omero obj new Screen name=Screen
06:01:20 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:20 + screen=Screen:4
06:01:20 ++ omero obj new Plate name=Plate
06:01:21 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:21 + plate=Plate:5
06:01:21 + omero obj new ScreenPlateLink parent=Screen:4 child=Plate:5
06:01:22 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:22 ScreenPlateLink:3
06:01:22 + echo 'Importing SPW file'
06:01:22 Importing SPW file
06:01:22 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
06:01:22 + omero import -r Screen:4 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
06:01:27 ++ sed -n -e 's/^Plate://p' plate_import.log
06:01:27 + plateid=6
06:01:27 + omero logout
06:01:28 + omero login training_user-2@bad8002a5571:4064 -w ome -g training_group
06:01:28 Created session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:28 + omero obj new Project 'name=Project 0'
06:01:29 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:29 Project:8
06:01:29 + omero obj new Dataset 'name=Dataset 0'
06:01:30 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:30 Dataset:17
06:01:30 + omero import test.fake --debug ERROR
06:01:31 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:32 2025-12-18 06:01:32,111 262 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
06:01:32 2025-12-18 06:01:32,126 277 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
06:01:33 Image:19
06:01:33 Other imported objects:
06:01:33 Fileset:11
06:01:33
06:01:33 ==> Summary
06:01:33 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.614
06:01:34 + omero obj new Screen name=Screen
06:01:34 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:34 Screen:5
06:01:34 + omero obj new Plate name=Plate
06:01:35 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
06:01:35 Plate:7
06:01:35 + omero login training_user@bad8002a5571:4064 -w ome -g training_group-2
06:01:36 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:36 + omero obj new Project 'name=Project 0'
06:01:37 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:37 Project:9
06:01:37 + omero obj new Dataset 'name=Dataset 0'
06:01:38 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:38 Dataset:18
06:01:38 + omero import test.fake --debug ERROR
06:01:39 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:39 2025-12-18 06:01:39,852 272 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
06:01:39 2025-12-18 06:01:39,868 288 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
06:01:41 Image:20
06:01:41 Other imported objects:
06:01:41 Fileset:12
06:01:41
06:01:41 ==> Summary
06:01:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.607
06:01:41 + omero obj new Screen name=Screen
06:01:42 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:42 Screen:6
06:01:42 + omero obj new Plate name=Plate
06:01:43 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
06:01:43 Plate:8
06:01:43 + omero logout
06:01:44 + echo omero.host=bad8002a5571
06:01:44 + echo omero.port=4064
06:01:44 + echo omero.webhost=http://nginx/web
06:01:44 + echo omero.servername=omero
06:01:44 + echo omero.user=training_user
06:01:44 + echo omero.pass=ome
06:01:44 + echo omero.group=training_group
06:01:44 + echo omero.projectid=7
06:01:44 + echo omero.datasetid=14
06:01:44 + echo omero.imageid=15
06:01:44 + echo omero.plateid=6
06:01:44 + echo omero.screenid=4
06:01:44 + echo omero.group2=training_group-2
06:01:44 + echo omero.ladmin=ladmin_user
06:01:44 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
06:01:44 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
06:01:44 + omero sessions clear
06:01:45 1 session(s) cleared
06:01:45 !! 12/18/25 06:01:45.340 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
06:01:45 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
06:01:45 + pip install --upgrade requests
06:01:45 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
06:01:45 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
06:01:45 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
06:01:45 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
06:01:45 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.11.12)
06:01:45 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
06:01:51 Running training suite
06:01:51 created 20 shapes
06:01:51 retrieved 20 shapes in 4 batches
06:01:51 Current user:
06:01:51 ID: 2
06:01:51 Username: training_user
06:01:51 Full Name: training_user training_user
06:01:51 Is Admin: False
06:01:51 []
06:01:51 Member of:
06:01:51 ID: 3 Name: training_group
06:01:51 ID: 4 Name: training_group-2
06:01:51 Current group: training_group
06:01:51 Group owners:
06:01:51 Group members:
06:01:51 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
06:01:51 ID: 2 UserName: training_user Name: training_user training_user
06:01:51 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
06:01:51 Owner of:
06:01:51 Admins:
06:01:51 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
06:01:51 ID: 0 UserName: root Name: root root
06:01:51 Created new Image:21 Name:"numpy image"
06:01:51 newPlane for z,t: 0 0 uint8 0 127
06:01:51 newPlane for z,t: 0 1 uint8 0 127
06:01:51 newPlane for z,t: 0 2 uint8 0 127
06:01:51 newPlane for z,t: 0 3 uint8 0 127
06:01:51 newPlane for z,t: 0 4 uint8 0 127
06:01:51 newPlane for z,t: 0 5 uint8 0 127
06:01:51 newPlane for z,t: 0 6 uint8 0 127
06:01:51 newPlane for z,t: 0 7 uint8 0 127
06:01:51 newPlane for z,t: 0 8 uint8 0 127
06:01:51 newPlane for z,t: 0 9 uint8 0 127
06:01:51 newPlane for z,t: 1 0 uint8 0 127
06:01:51 newPlane for z,t: 1 1 uint8 0 127
06:01:51 newPlane for z,t: 1 2 uint8 0 127
06:01:51 newPlane for z,t: 1 3 uint8 0 127
06:01:51 newPlane for z,t: 1 4 uint8 0 127
06:01:51 newPlane for z,t: 1 5 uint8 0 127
06:01:51 newPlane for z,t: 1 6 uint8 0 127
06:01:51 newPlane for z,t: 1 7 uint8 0 127
06:01:51 newPlane for z,t: 1 8 uint8 0 127
06:01:51 newPlane for z,t: 1 9 uint8 0 127
06:01:51 newPlane for z,t: 2 0 uint8 0 127
06:01:51 newPlane for z,t: 2 1 uint8 0 127
06:01:51 newPlane for z,t: 2 2 uint8 0 127
06:01:51 newPlane for z,t: 2 3 uint8 0 127
06:01:51 newPlane for z,t: 2 4 uint8 0 127
06:01:51 newPlane for z,t: 2 5 uint8 0 127
06:01:51 newPlane for z,t: 2 6 uint8 0 127
06:01:51 newPlane for z,t: 2 7 uint8 0 127
06:01:51 newPlane for z,t: 2 8 uint8 0 127
06:01:51 newPlane for z,t: 2 9 uint8 0 127
06:01:51 newPlane for z,t: 3 0 uint8 0 127
06:01:51 newPlane for z,t: 3 1 uint8 0 127
06:01:51 newPlane for z,t: 3 2 uint8 0 127
06:01:51 newPlane for z,t: 3 3 uint8 0 127
06:01:51 newPlane for z,t: 3 4 uint8 0 127
06:01:51 newPlane for z,t: 3 5 uint8 0 127
06:01:51 newPlane for z,t: 3 6 uint8 0 127
06:01:51 newPlane for z,t: 3 7 uint8 0 127
06:01:51 newPlane for z,t: 3 8 uint8 0 127
06:01:51 newPlane for z,t: 3 9 uint8 0 127
06:01:51 newPlane for z,t: 4 0 uint8 0 127
06:01:51 newPlane for z,t: 4 1 uint8 0 127
06:01:51 newPlane for z,t: 4 2 uint8 0 127
06:01:51 newPlane for z,t: 4 3 uint8 0 127
06:01:51 newPlane for z,t: 4 4 uint8 0 127
06:01:51 newPlane for z,t: 4 5 uint8 0 127
06:01:51 newPlane for z,t: 4 6 uint8 0 127
06:01:51 newPlane for z,t: 4 7 uint8 0 127
06:01:51 newPlane for z,t: 4 8 uint8 0 127
06:01:51 newPlane for z,t: 4 9 uint8 0 127
06:01:51 Deleting, please wait.
06:01:51 Error? False
06:01:51 15 test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:51 training_user_2/Blitz-0-Ice.ThreadPool.Server-10/2025-12/18/06-01-15.628/ test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:51 1
06:01:51 training_user_2/Blitz-0-Ice.ThreadPool.Server-10/2025-12/18/06-01-15.628/ test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:51 Current group: training_group
06:01:51 Permissions: READ-ONLY (rwr---)
06:01:51 Project 0 Owner: training_user-2 training_user-2
06:01:51 Project 0 Owner: training_user-2 training_user-2
06:01:51 Project 1 Owner: training_user training_user
06:01:51 Project 1 Owner: training_user training_user
06:01:51 Image: <_ImageWrapper id=15>
06:01:51 Image: <_ImageWrapper id=15> Group: training_group 3
06:01:51 Image: <_ImageWrapper id=15> Channel: 0
06:01:51 Channel: 1
06:01:51 Channel: 2
06:01:51
06:01:51
06:01:51 original_metadata
06:01:51 global_metadata
06:01:51 series_metadata
06:01:51
06:01:51 Plane at zct: 0 0 0
06:01:51 [[ 0 0 0 ... 253 254 255]
06:01:51 [ 0 0 0 ... 253 254 255]
06:01:51 [ 0 0 0 ... 253 254 255]
06:01:51 ...
06:01:51 [ 0 1 2 ... 253 254 255]
06:01:51 [ 0 1 2 ... 253 254 255]
06:01:51 [ 0 1 2 ... 253 254 255]]
06:01:51 shape: (512, 512)
06:01:51 min: 0 max: 255 pixel type: uint8
06:01:51
06:01:51 Z stack of tiles:
06:01:51 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
06:01:51 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
06:01:51 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
06:01:51 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
06:01:51 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
06:01:51
06:01:51 Hyper stack of planes:
06:01:51 plane zct: (2, 0, 0) min: 0 max: 255
06:01:51 plane zct: (2, 0, 1) min: 0 max: 255
06:01:51 plane zct: (2, 0, 2) min: 0 max: 255
06:01:51 plane zct: (2, 0, 3) min: 0 max: 255
06:01:51 plane zct: (2, 0, 4) min: 0 max: 255
06:01:51 plane zct: (2, 0, 5) min: 0 max: 255
06:01:51 plane zct: (2, 0, 6) min: 0 max: 255
06:01:51 plane zct: (2, 0, 7) min: 0 max: 255
06:01:51 plane zct: (2, 0, 8) min: 0 max: 255
06:01:51 plane zct: (2, 0, 9) min: 0 max: 255
06:01:51 plane zct: (2, 1, 0) min: 0 max: 255
06:01:51 plane zct: (2, 1, 1) min: 0 max: 255
06:01:51 plane zct: (2, 1, 2) min: 0 max: 255
06:01:51 plane zct: (2, 1, 3) min: 0 max: 255
06:01:51 plane zct: (2, 1, 4) min: 0 max: 255
06:01:51 plane zct: (2, 1, 5) min: 0 max: 255
06:01:51 plane zct: (2, 1, 6) min: 0 max: 255
06:01:51 plane zct: (2, 1, 7) min: 0 max: 255
06:01:51 plane zct: (2, 1, 8) min: 0 max: 255
06:01:51 plane zct: (2, 1, 9) min: 0 max: 255
06:01:51 plane zct: (2, 2, 0) min: 0 max: 255
06:01:51 plane zct: (2, 2, 1) min: 0 max: 255
06:01:51 plane zct: (2, 2, 2) min: 0 max: 255
06:01:51 plane zct: (2, 2, 3) min: 0 max: 255
06:01:51 plane zct: (2, 2, 4) min: 0 max: 255
06:01:51 plane zct: (2, 2, 5) min: 0 max: 255
06:01:51 plane zct: (2, 2, 6) min: 0 max: 255
06:01:51 plane zct: (2, 2, 7) min: 0 max: 255
06:01:51 plane zct: (2, 2, 8) min: 0 max: 255
06:01:51 plane zct: (2, 2, 9) min: 0 max: 255
06:01:51 plane zct: (3, 0, 0) min: 0 max: 255
06:01:51 plane zct: (3, 0, 1) min: 0 max: 255
06:01:51 plane zct: (3, 0, 2) min: 0 max: 255
06:01:51 plane zct: (3, 0, 3) min: 0 max: 255
06:01:51 plane zct: (3, 0, 4) min: 0 max: 255
06:01:51 plane zct: (3, 0, 5) min: 0 max: 255
06:01:51 plane zct: (3, 0, 6) min: 0 max: 255
06:01:51 plane zct: (3, 0, 7) min: 0 max: 255
06:01:51 plane zct: (3, 0, 8) min: 0 max: 255
06:01:51 plane zct: (3, 0, 9) min: 0 max: 255
06:01:51 plane zct: (3, 1, 0) min: 0 max: 255
06:01:51 plane zct: (3, 1, 1) min: 0 max: 255
06:01:51 plane zct: (3, 1, 2) min: 0 max: 255
06:01:51 plane zct: (3, 1, 3) min: 0 max: 255
06:01:51 plane zct: (3, 1, 4) min: 0 max: 255
06:01:51 plane zct: (3, 1, 5) min: 0 max: 255
06:01:51 plane zct: (3, 1, 6) min: 0 max: 255
06:01:51 plane zct: (3, 1, 7) min: 0 max: 255
06:01:51 plane zct: (3, 1, 8) min: 0 max: 255
06:01:51 plane zct: (3, 1, 9) min: 0 max: 255
06:01:51 plane zct: (3, 2, 0) min: 0 max: 255
06:01:51 plane zct: (3, 2, 1) min: 0 max: 255
06:01:51 plane zct: (3, 2, 2) min: 0 max: 255
06:01:51 plane zct: (3, 2, 3) min: 0 max: 255
06:01:51 plane zct: (3, 2, 4) min: 0 max: 255
06:01:51 plane zct: (3, 2, 5) min: 0 max: 255
06:01:51 plane zct: (3, 2, 6) min: 0 max: 255
06:01:51 plane zct: (3, 2, 7) min: 0 max: 255
06:01:51 plane zct: (3, 2, 8) min: 0 max: 255
06:01:51 plane zct: (3, 2, 9) min: 0 max: 255
06:01:51 plane zct: (4, 0, 0) min: 0 max: 255
06:01:51 plane zct: (4, 0, 1) min: 0 max: 255
06:01:51 plane zct: (4, 0, 2) min: 0 max: 255
06:01:51 plane zct: (4, 0, 3) min: 0 max: 255
06:01:51 plane zct: (4, 0, 4) min: 0 max: 255
06:01:51 plane zct: (4, 0, 5) min: 0 max: 255
06:01:51 plane zct: (4, 0, 6) min: 0 max: 255
06:01:51 plane zct: (4, 0, 7) min: 0 max: 255
06:01:51 plane zct: (4, 0, 8) min: 0 max: 255
06:01:51 plane zct: (4, 0, 9) min: 0 max: 255
06:01:51 plane zct: (4, 1, 0) min: 0 max: 255
06:01:51 plane zct: (4, 1, 1) min: 0 max: 255
06:01:51 plane zct: (4, 1, 2) min: 0 max: 255
06:01:51 plane zct: (4, 1, 3) min: 0 max: 255
06:01:51 plane zct: (4, 1, 4) min: 0 max: 255
06:01:51 plane zct: (4, 1, 5) min: 0 max: 255
06:01:51 plane zct: (4, 1, 6) min: 0 max: 255
06:01:51 plane zct: (4, 1, 7) min: 0 max: 255
06:01:51 plane zct: (4, 1, 8) min: 0 max: 255
06:01:51 plane zct: (4, 1, 9) min: 0 max: 255
06:01:51 plane zct: (4, 2, 0) min: 0 max: 255
06:01:51 plane zct: (4, 2, 1) min: 0 max: 255
06:01:51 plane zct: (4, 2, 2) min: 0 max: 255
06:01:51 plane zct: (4, 2, 3) min: 0 max: 255
06:01:51 plane zct: (4, 2, 4) min: 0 max: 255
06:01:51 plane zct: (4, 2, 5) min: 0 max: 255
06:01:51 plane zct: (4, 2, 6) min: 0 max: 255
06:01:51 plane zct: (4, 2, 7) min: 0 max: 255
06:01:51 plane zct: (4, 2, 8) min: 0 max: 255
06:01:51 plane zct: (4, 2, 9) min: 0 max: 255
06:01:51 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
06:01:55
06:01:55 List Projects:
06:01:55 ==================================================
06:01:55 Project:1 Name:"Project 1" (owner=training_user)
06:01:55 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
06:01:55 Image:1 Name:"test.fake" (owner=training_user)
06:01:55 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
06:01:55 Image:12 Name:"New Image" (owner=training_user)
06:01:55 Image:2 Name:"test.fake" (owner=training_user)
06:01:55 Dataset:7 Name:"New Dataset" (owner=training_user)
06:01:55 Project:7 Name:"Project 1" (owner=training_user)
06:01:55 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
06:01:55 Image:13 Name:"test.fake" (owner=training_user)
06:01:55 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
06:01:55 Image:14 Name:"test.fake" (owner=training_user)
06:01:55
06:01:55 List orphaned Datasets:
06:01:55 ==================================================
06:01:55 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
06:01:55 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
06:01:55 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
06:01:55 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
06:01:55 Dataset:8 Name:"MyDataset" (owner=training_user)
06:01:55 Dataset:9 Name:"MyDataset" (owner=training_user)
06:01:55 Dataset:10 Name:"MyDataset" (owner=training_user)
06:01:55 Dataset:11 Name:"New Dataset" (owner=training_user)
06:01:55 Dataset:12 Name:"New Dataset2" (owner=training_user)
06:01:55 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
06:01:55 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
06:01:55
06:01:55 Images in Dataset: 14
06:01:55 ==================================================
06:01:55 Image:14 Name:"test.fake" (owner=training_user)
06:01:55
06:01:55 Image:15
06:01:55 ==================================================
06:01:55 test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:55 X: 512
06:01:55 Y: 512
06:01:55 Z: 5
06:01:55 C: 3
06:01:55 T: 10
06:01:55 Channel: 0 Color: (255, 0, 0)
06:01:55 Lookup table: None
06:01:55 Is reverse intensity? False
06:01:55 Channel: 1 Color: (0, 255, 0)
06:01:55 Lookup table: None
06:01:55 Is reverse intensity? False
06:01:55 Channel: 2 Color: (0, 0, 255)
06:01:55 Lookup table: None
06:01:55 Is reverse intensity? False
06:01:55 Pixel Size X: None
06:01:55
06:01:55 List Screens:
06:01:55 ==================================================
06:01:55 Screen:1 Name:"Screen" (owner=training_user)
06:01:55 Plate:1 Name:"Plate" (owner=training_user)
06:01:55 Plate:2 Name:"Plate Name 0" (owner=training_user)
06:01:55 Screen:4 Name:"Screen" (owner=training_user)
06:01:55 Plate:5 Name:"Plate" (owner=training_user)
06:01:55 Plate:6 Name:"Plate Name 0" (owner=training_user)
06:01:55 Screen:2 Name:"Screen" (owner=training_user-2)
06:01:55 Screen:5 Name:"Screen" (owner=training_user-2)
06:01:55
06:01:55 Plate:6
06:01:55 ==================================================
06:01:55
06:01:55 Number of fields: (0, 0)
06:01:55
06:01:55 Grid size: {'rows': 1, 'columns': 3}
06:01:55
06:01:55 Wells in Plate: Plate Name 0
06:01:55 Well: 0 0 Fields: 1
06:01:55 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 16
06:01:55 Well: 0 1 Fields: 1
06:01:55 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 17
06:01:55 Well: 0 2 Fields: 1
06:01:55 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 18
06:01:55 14 <class 'omero.model.MapAnnotationI'>
06:01:55 added by training_user
06:01:55 Image ID: 15
06:01:55 Annotation ID: 14
06:01:55 15
06:01:55 Channel rendering settings:
06:01:55 Name: 0
06:01:55 Color: FF0000
06:01:55 Active: True
06:01:55 Levels: 0.0 - 255.0
06:01:55 Name: 1
06:01:55 Color: 00FF00
06:01:55 Active: True
06:01:55 Levels: 0.0 - 255.0
06:01:55 Name: 2
06:01:55 Color: 0000FF
06:01:55 Active: True
06:01:55 Levels: 0.0 - 255.0
06:01:55 isGreyscaleRenderingModel: False
06:01:55 Default Z/T positions:
06:01:55 Z = 2, T = 0
06:01:55 Rendering Defs on Image:
06:01:55 ID: 12 (owner: training_user training_user)
06:01:55 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
06:01:55 ROI: ID: 9
06:01:55 Shape: id 48 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
06:01:55 Shape: id 49 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
06:01:55 ROI: ID: 10
06:01:55 Shape: id 50 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
06:01:55 ROI: ID: 11
06:01:55 Shape: id 51 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
06:01:55 ROI: ID: 12
06:01:55 Shape: id 52 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
06:01:55 ROI: ID: 13
06:01:55 <class 'omero.model.PolygonI'> Not supported by this code
06:01:55 Shape: id 53 theT 0 theZ 2 textValue test-Polygon
06:01:55 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
06:01:55 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
06:01:55 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
06:01:55 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
06:01:55 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
06:01:55 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
06:01:55 Removing Shape from ROI...
06:01:55 Deleting ROI: 14
06:01:55 Table Columns:
06:01:55 Uid
06:01:55 MyStringColumnInit
06:01:55 Row count: 10
06:01:55
06:01:55 Get All Data for rows: [3, 5, 7]
06:01:55 Data for Column: Uid
06:01:55 1
06:01:55 2
06:01:55 3
06:01:55 4
06:01:55 5
06:01:55 6
06:01:55 7
06:01:55 8
06:01:55 9
06:01:55 10
06:01:55 Data for Column: MyStringColumnInit
06:01:55 one
06:01:55 two
06:01:55 three
06:01:55 four
06:01:55 five
06:01:55 six
06:01:55 seven
06:01:55 eight
06:01:55 nine
06:01:55 ten
06:01:55
06:01:55 Get All Data for rows with slice: [3, 5, 7]
06:01:55 Data for Column: Uid
06:01:55 4
06:01:55 6
06:01:55 8
06:01:55 Data for Column: MyStringColumnInit
06:01:55 four
06:01:55 six
06:01:55 eight
06:01:55
06:01:55 Get Data for cols: [1] and between rows: 3 - 7
06:01:55 Data for Column: MyStringColumnInit
06:01:55 four
06:01:55 five
06:01:55 six
06:01:55 seven
06:01:55
06:01:55 Get Data for cols: [1] and between rows: 3 - 7 with slice
06:01:55 Data for Column: MyStringColumnInit
06:01:55 four
06:01:55 five
06:01:55 six
06:01:55 seven
06:01:55 Query Results for Column: Uid
06:01:55 3
06:01:55 4
06:01:55 5
06:01:55 6
06:01:55 7
06:01:55 8
06:01:55 Query Results for Column: MyStringColumnInit
06:01:55 three
06:01:55 four
06:01:55 five
06:01:55 six
06:01:55 seven
06:01:55 eight
06:01:55 Opened table with row-count: 10
06:01:55 New dataset, Id: 19
06:01:55 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
06:01:55 18 <class 'omero.model.TagAnnotationI'> added by training_user
06:01:55 Tag value: New Tag
06:01:55 19 <class 'omero.model.MapAnnotationI'> added by training_user
06:01:55
06:01:55 Creating an OriginalFile and FileAnnotation
06:01:55 Attaching FileAnnotation to Dataset: File ID: 20 , README.txt Size: 15
06:01:55
06:01:55 Annotations on Dataset: New Dataset
06:01:55 File ID: 240 README.txt Size: 15
06:01:55
06:01:55 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
06:01:55 File downloaded!
06:01:55 7 README.txt
06:01:55 20 README.txt
06:01:55 Found Annotation with namespace: imperial.training.demo
06:01:55 Plane: 0 0 0
06:01:55 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
06:01:55 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
06:01:55
06:01:55 List Datasets:
06:01:55 ID: 8 Name: MyDataset
06:01:55 ID: 9 Name: MyDataset
06:01:55 ID: 10 Name: MyDataset
06:01:55 ID: 20 Name: MyDataset
06:01:55 ID: 21 Name: MyDataset
06:01:55 ID: 22 Name: MyDataset
06:01:55
06:01:55 List Tags:
06:01:55 ID: 8 Text: MyTag Desc: MyTag 0
06:01:55 ID: 9 Text: MyTag Desc: MyTag 1
06:01:55 ID: 10 Text: MyTag Desc: MyTag 2
06:01:55 ID: 21 Text: MyTag Desc: MyTag 0
06:01:55 ID: 22 Text: MyTag Desc: MyTag 1
06:01:55 ID: 23 Text: MyTag Desc: MyTag 2
06:01:55 New dataset, Id: 23
06:01:55 New dataset 2, Id: 24
06:01:55 test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:55 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
06:01:55 [[ 0 0 0 ... 102 103 104]
06:01:55 [ 0 0 0 ... 102 103 104]
06:01:55 [ 0 0 0 ... 102 103 104]
06:01:55 ...
06:01:55 [ 5 6 7 ... 102 103 104]
06:01:55 [ 5 6 7 ... 102 103 104]
06:01:55 [ 5 6 7 ... 102 103 104]]
06:01:55 shape: (100, 100)
06:01:55 min: 0 max: 104 pixel type: uint8
06:01:55 Average : 53.9125
06:01:55 Getting data for T, tile: 0 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 1 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 2 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 3 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 4 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 5 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 6 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 7 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 8 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 9 (256, 0, 10, 512)
06:01:55 kymograph_data (512, 100)
06:01:55 Attaching kymograph.png to image
06:01:55 test&sizeT=10&sizeZ=5&sizeC=3.fake
06:01:55 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
06:01:55 [[ 0 0 0 ... 102 103 104]
06:01:55 [ 0 0 0 ... 102 103 104]
06:01:55 [ 0 0 0 ... 102 103 104]
06:01:55 ...
06:01:55 [ 5 6 7 ... 102 103 104]
06:01:55 [ 5 6 7 ... 102 103 104]
06:01:55 [ 5 6 7 ... 102 103 104]]
06:01:55 shape: (100, 100)
06:01:55 min: 0 max: 104 pixel type: uint8
06:01:55 Average : 53.9125
06:01:55 Getting data for T, tile: 0 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 1 (256, 0, 10, 512)
06:01:55 Getting data for T, tile: 2 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 3 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 4 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 5 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 6 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 7 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 8 (256, 0, 10, 512)
06:01:56 Getting data for T, tile: 9 (256, 0, 10, 512)
06:01:56 kymograph_data (512, 100)
06:01:56 Attaching kymograph.png to image
06:01:56 No file downloaded. Project not rated.
06:01:56 New image, Id: 24
06:01:56 Starting at: http://nginx/web/api/
06:01:56 CSRF token C7E2ELga7DwJv1EY0Ly0JwKGIJj4sjfj
06:01:56 Servers:
06:01:56 -id: 1
06:01:56 name: omero
06:01:56 host: omero
06:01:56 port: 4064
06:01:56 -id: 2
06:01:56 name: testintegration
06:01:56 host: testintegration
06:01:56 port: 14064
06:01:56 eventContext {'sessionId': 135, 'sessionUuid': '2fcf4ca9-7190-41dd-ad01-856b50b06105', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
06:01:56 Projects:
06:01:56 2 Project 0
06:01:56 3 Project 0
06:01:56 Created Project: 12 API TEST foo
06:01:56 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 12, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/12/datasets/'}}
06:01:56 !! 12/18/25 06:01:56.740 error: communicator not destroyed during global destruction.+ deactivate
06:01:56 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
06:01:56 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:01:56 + export PATH
06:01:56 + unset _OLD_VIRTUAL_PATH
06:01:56 + '[' -n '' ']'
06:01:56 + hash -r
06:01:56 + '[' -n '' ']'
06:01:56 + unset VIRTUAL_ENV
06:01:56 + unset VIRTUAL_ENV_PROMPT
06:01:56 + '[' '!' '' = nondestructive ']'
06:01:56 + unset -f deactivate
06:01:56 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
06:01:56 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
06:01:58 Note: Some input files use unchecked or unsafe operations.
06:01:58 Note: Recompile with -Xlint:unchecked for details.
06:01:58 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
06:02:01 omero.cmd.Delete2Response@5778826f
06:02:01 omero.cmd.Delete2Response@73c60324
06:02:01 one [class java.lang.String] 1.0 [class java.lang.Double]
06:02:01 two [class java.lang.String] 2.0 [class java.lang.Double]
06:02:01 three [class java.lang.String] 3.0 [class java.lang.Double]
06:02:01 -1.0
06:02:01 0
06:02:01 1
06:02:01 2
06:02:04 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
06:02:04 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 8 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 9 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 10 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 11 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 12 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 13 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 14 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 15 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 16 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 17 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 18 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 19 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 20 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 21 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 22 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 23 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 24 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 25 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 26 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 27 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
06:02:04 28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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06:02:04 Project:7 Project 1
06:02:04 dataset:13 Dataset 1-1
06:02:04 dataset:19 New Dataset
06:02:04 dataset:14 Dataset 1-2
06:02:04 Project:1 Project 1
06:02:04 dataset:7 New Dataset
06:02:04 dataset:2 Dataset 1-2
06:02:04 dataset:1 Dataset 1-1
06:02:04 Project:8 Project 0
06:02:04 Project:2 Project 0
06:02:04 image:25 newImageFrom15
06:02:04 image:14 test.fake
06:02:04 image:24 New Image
06:02:04 5
06:02:04 10
06:02:04 3
06:02:04 512
06:02:04 512
06:02:04 screen:1 Screen
06:02:04 plate:2 Plate Name 0
06:02:04 plate:1 Plate
06:02:04 screen:4 Screen
06:02:04 plate:5 Plate
06:02:04 plate:6 Plate Name 0
06:02:04 screen:2 Screen
06:02:04 screen:5 Screen
06:02:04 well:6
06:02:04 well:4
06:02:04 well:5
06:02:04 plate:1
06:02:04 plate:6
06:02:04 plate:5
06:02:04 plate:7
06:02:04 plate:3
06:02:04 plate:2
06:02:04
06:02:04 List Datasets:
06:02:04 ID: 8 Name: MyDataset
06:02:04 ID: 9 Name: MyDataset
06:02:04 ID: 10 Name: MyDataset
06:02:04 ID: 20 Name: MyDataset
06:02:04 ID: 21 Name: MyDataset
06:02:04 ID: 22 Name: MyDataset
06:02:04 ID: 26 Name: MyDataset
06:02:04 ID: 27 Name: MyDataset
06:02:04 ID: 28 Name: MyDataset
06:02:04
06:02:04 List Tags:
06:02:04 ID: 29 NS: omero.training.demo
06:02:04 ID: 30 NS: omero.training.demo
06:02:04 ID: 31 NS: omero.training.demo
06:02:05 Dataset:10 MyDataset
06:02:05 Dataset:4 Orphaned dataset 2
06:02:05 Dataset:12 New Dataset2
06:02:05 Dataset:22 MyDataset
06:02:05 Project:1 Project 1
06:02:05 Dataset:16 Orphaned dataset 2
06:02:05 Dataset:20 MyDataset
06:02:05 Dataset:23 New Dataset
06:02:05 Dataset:8 MyDataset
06:02:05 Project:7 Project 1
06:02:05 Dataset:15 Orphaned dataset 1
06:02:05 Dataset:25 FileAnnotationDelete
06:02:05 Dataset:11 New Dataset
06:02:05 Dataset:27 MyDataset
06:02:05 Dataset:9 MyDataset
06:02:05 Dataset:28 MyDataset
06:02:05 Dataset:24 New Dataset2
06:02:05 Dataset:26 MyDataset
06:02:05 Dataset:21 MyDataset
06:02:05 Dataset:3 Orphaned dataset 1
06:02:05 Size:0
06:02:05 512 512
06:02:05 9
06:02:05 9
06:02:05 1
06:02:07 Logged in as ladmin_user
06:02:07 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
06:02:07 Added 'ladmin_user's tag' to dataset MyDataset as admin.
06:02:07 Finished: SUCCESS
