16:28:29 Started by user devspace
16:28:29 Running as SYSTEM
16:28:29 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
16:28:29 [OMERO-training] $ /bin/bash -xe /tmp/jenkins8719465142839171293.sh
16:28:29 + rm -rf /home/omero/workspace/OMERO-training/.venv3
16:28:29 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
16:28:50 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
16:28:50 ++ deactivate nondestructive
16:28:50 ++ '[' -n '' ']'
16:28:50 ++ '[' -n '' ']'
16:28:50 ++ hash -r
16:28:50 ++ '[' -n '' ']'
16:28:50 ++ unset VIRTUAL_ENV
16:28:50 ++ unset VIRTUAL_ENV_PROMPT
16:28:50 ++ '[' '!' nondestructive = nondestructive ']'
16:28:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
16:28:50 ++ export VIRTUAL_ENV
16:28:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:28:50 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:28:50 ++ export PATH
16:28:50 ++ '[' -n '' ']'
16:28:50 ++ '[' -z '' ']'
16:28:50 ++ _OLD_VIRTUAL_PS1=
16:28:50 ++ PS1='(.venv3) '
16:28:50 ++ export PS1
16:28:50 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
16:28:50 ++ export VIRTUAL_ENV_PROMPT
16:28:50 ++ hash -r
16:28:50 + pip install -U pip setuptools
16:28:51 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
16:28:52 Collecting pip
16:28:52 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
16:28:52 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
16:28:52 Collecting setuptools
16:28:52 Downloading setuptools-83.0.0-py3-none-any.whl (1.0 MB)
16:28:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.0/1.0 MB 7.7 MB/s eta 0:00:00
16:28:52 Installing collected packages: setuptools, pip
16:28:52 Attempting uninstall: setuptools
16:28:52 Found existing installation: setuptools 65.5.1
16:28:53 Uninstalling setuptools-65.5.1:
16:28:53 Successfully uninstalled setuptools-65.5.1
16:29:04 Attempting uninstall: pip
16:29:04 Found existing installation: pip 22.3.1
16:29:06 Uninstalling pip-22.3.1:
16:29:06 Successfully uninstalled pip-22.3.1
16:29:20 Successfully installed pip-26.1.2 setuptools-83.0.0
16:29:20 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
16:29:21 Collecting zeroc-ice==3.6.5
16:29:22 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
16:29:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 18.3 MB/s 0:00:02
16:29:24 Installing collected packages: zeroc-ice
16:29:27 Successfully installed zeroc-ice-3.6.5
16:29:27 + pip install markdown
16:29:28 Collecting markdown
16:29:28 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
16:29:28 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
16:29:28 Installing collected packages: markdown
16:29:29 Successfully installed markdown-3.10.2
16:29:29 + pip install mox3 pytest 'pytest-xdist<2'
16:29:30 Collecting mox3
16:29:30 Downloading mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
16:29:30 Collecting pytest
16:29:30 Downloading pytest-9.1.1-py3-none-any.whl.metadata (7.6 kB)
16:29:30 Collecting pytest-xdist<2
16:29:30 Downloading pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
16:29:30 Collecting execnet>=1.1 (from pytest-xdist<2)
16:29:30 Downloading execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
16:29:31 Collecting pytest-forked (from pytest-xdist<2)
16:29:31 Downloading pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
16:29:31 Collecting six (from pytest-xdist<2)
16:29:31 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
16:29:31 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
16:29:31 Downloading pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
16:29:31 Collecting fixtures>=3.0.0 (from mox3)
16:29:31 Downloading fixtures-4.3.2-py3-none-any.whl.metadata (22 kB)
16:29:31 Collecting iniconfig>=1.0.1 (from pytest)
16:29:31 Downloading iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
16:29:31 Collecting packaging>=22 (from pytest)
16:29:31 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
16:29:31 Collecting pluggy<2,>=1.5 (from pytest)
16:29:31 Downloading pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
16:29:31 Collecting pygments>=2.7.2 (from pytest)
16:29:31 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
16:29:31 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (83.0.0)
16:29:31 Collecting py (from pytest-forked->pytest-xdist<2)
16:29:31 Downloading py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
16:29:32 Downloading pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
16:29:32 Downloading mox3-1.1.0-py3-none-any.whl (43 kB)
16:29:32 Downloading pytest-9.1.1-py3-none-any.whl (386 kB)
16:29:32 Downloading pluggy-1.6.0-py3-none-any.whl (20 kB)
16:29:32 Downloading execnet-2.1.2-py3-none-any.whl (40 kB)
16:29:32 Downloading fixtures-4.3.2-py3-none-any.whl (41 kB)
16:29:32 Downloading iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
16:29:32 Using cached packaging-26.2-py3-none-any.whl (100 kB)
16:29:32 Downloading pbr-7.0.3-py2.py3-none-any.whl (131 kB)
16:29:32 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
16:29:32 Downloading pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
16:29:32 Downloading py-1.11.0-py2.py3-none-any.whl (98 kB)
16:29:32 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
16:29:32 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
16:29:49
16:29:49 Successfully installed execnet-2.1.2 fixtures-4.3.2 iniconfig-2.3.0 mox3-1.1.0 packaging-26.2 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.20.0 pytest-9.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
16:29:49 + pip install tables
16:29:50 Collecting tables
16:29:50 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
16:29:50 Collecting numpy>=1.20.0 (from tables)
16:29:50 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
16:29:50 Collecting numexpr>=2.6.2 (from tables)
16:29:50 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
16:29:50 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2)
16:29:50 Collecting py-cpuinfo (from tables)
16:29:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
16:29:50 Collecting blosc2>=2.3.0 (from tables)
16:29:50 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.8 kB)
16:29:51 Collecting ndindex (from blosc2>=2.3.0->tables)
16:29:51 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
16:29:51 Collecting msgpack (from blosc2>=2.3.0->tables)
16:29:51 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
16:29:51 Collecting pydantic (from blosc2>=2.3.0->tables)
16:29:51 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
16:29:51 Collecting requests (from blosc2>=2.3.0->tables)
16:29:51 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
16:29:51 Collecting rich (from blosc2>=2.3.0->tables)
16:29:51 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
16:29:51 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
16:29:51 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
16:29:51 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
16:29:51 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
16:29:52 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
16:29:52 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
16:29:52 Collecting typing-extensions>=4.14.1 (from pydantic->blosc2>=2.3.0->tables)
16:29:52 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
16:29:52 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
16:29:52 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
16:29:52 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
16:29:52 Downloading charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
16:29:53 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
16:29:53 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
16:29:53 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
16:29:53 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
16:29:53 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
16:29:53 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
16:29:53 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
16:29:53 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
16:29:53 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0)
16:29:53 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
16:29:53 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
16:29:53 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
16:29:53 Using cached blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (6.8 MB)
16:29:53 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
16:29:53 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
16:29:53 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
16:29:53 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
16:29:53 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
16:29:53 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
16:29:53 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
16:29:53 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
16:29:53 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
16:29:53 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
16:29:53 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
16:29:53 Downloading charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
16:29:53 Using cached idna-3.18-py3-none-any.whl (65 kB)
16:29:53 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
16:29:53 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
16:29:53 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
16:29:53 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
16:29:53 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
16:29:53 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
16:29:53 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, threadpoolctl, numpy, ndindex, msgpack, mdurl, idna, charset_normalizer, certifi, annotated-types, typing-inspection, requests, pydantic-core, numexpr, markdown-it-py, rich, pydantic, blosc2, tables
16:30:32
16:30:32 Successfully installed annotated-types-0.7.0 blosc2-4.7.0 certifi-2026.6.17 charset_normalizer-3.4.9 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 requests-2.34.2 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-extensions-4.16.0 typing-inspection-0.4.2 urllib3-2.7.0
16:30:33 + pip install jinja2
16:30:34 Collecting jinja2
16:30:34 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
16:30:34 Collecting MarkupSafe>=2.0 (from jinja2)
16:30:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
16:30:34 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
16:30:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
16:30:34 Installing collected packages: MarkupSafe, jinja2
16:30:35
16:30:35 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
16:30:35 + rm -rf '/home/omero/workspace/OMERO-training/*'
16:30:35 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 1
16:30:38 Copied 2 artifacts from "OMERO-build" build number 2
16:30:38 Copied 2 artifacts from "OMERO-build-build" build number 9
16:30:38 [OMERO-training] $ /bin/bash -xe /tmp/jenkins8896408565585168689.sh
16:30:38 + source /home/settings.env
16:30:38 ++ OMERO_DB_HOST=pg
16:30:38 ++ OMERO_DB_USER=postgres
16:30:38 ++ OMERO_DB_PASS=
16:30:38 ++ OMERO_ROOT_PASS=omero
16:30:38 ++ OMERO_DATA_DIR=/OMERO
16:30:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:30:38 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
16:30:38 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
16:30:38 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
16:30:38 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
16:30:38 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
16:30:38 ++ ls openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:38 + ZIP=openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:38 + DIST=openmicroscopy-5.6.3-614-b7d1771417-ice36-b2
16:30:38 + unzip -n openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:38 Archive: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:38 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/
16:30:38 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.classpath-template
16:30:38 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/
16:30:38 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/Pull_Request_Template.md
16:30:38 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/workflows/
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/workflows/docker_build.yml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/workflows/release.yml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/workflows/source_build.yml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.github/workflows/update.yaml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.mailmap
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/.project
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/CMakeLists.txt
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/CONTRIBUTING.md
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/Dockerfile
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/LICENSE.txt
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/README.md
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/SUPPORT.md
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/build.bat
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/build.py
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/build.xml
16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/
16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/.classpath
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/.project
16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/excludebugs.xml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/global.xml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/hibernate.xml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/lifecycle.xml
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/version.xml
16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/scripts/
16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/scripts/parse_version
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16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tests/
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16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tests/ui/resources/robot.template
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16:30:39 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tests/ui/resources/web/annotation.txt
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16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tests/ui/testcases/
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16:30:39 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/cmake/Version.cmake
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16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/
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16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
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16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
16:30:40 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
16:30:40 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_pred_impl_unittest.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test.py
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_test_utils.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_ex_test.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test.py
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_unittest.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
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16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/README.h
16:30:41 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/
16:30:41 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
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16:30:41 extracting: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/IcePortPop.h
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16:30:42 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/templates.h
16:30:42 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/util/
16:30:42 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/util/concurrency.cpp
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16:30:42 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/src/omero/util/uuid.h
16:30:42 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/test/
16:30:42 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/test/CMakeLists.txt
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16:30:43 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroJava/test/integration/chgrp/
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16:30:44 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/examples/
16:30:44 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/examples/createSession.py
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16:30:44 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/examples/projection_1.py
16:30:44 extracting: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/examples/submit.omero
16:30:44 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/examples/upload.omero
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16:30:44 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/test/
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16:30:45 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/test/integration/scriptstest/
16:30:45 extracting: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
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16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/misc/current.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/misc/enums.py
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__1/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__10/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__10/OMERO3A__9.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__10.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__2/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__2/OMERO3A__1.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
16:30:51 creating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
16:30:51 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
16:30:52 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/views.sql
16:30:52 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/test.xml
16:30:52 inflating: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/update_dependencies.sh
16:30:52 extracting: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/antlib/resources/gitversion.xml
16:30:52 extracting: openmicroscopy-5.6.3-614-b7d1771417-ice36-b2/components/tools/OmeroCpp/cmake/GitVersion.cmake
16:30:52 + rm -f openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:52 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-614-b7d1771417-ice36-b2 /home/omero/workspace/OMERO-training/openmicroscopy
16:30:52 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
16:30:52 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
16:30:52 ++ ls OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:52 + ZIP=OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:52 + DIST=OMERO.server-5.6.3-614-b7d1771417-ice36-b2
16:30:52 + unzip -n OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:52 Archive: OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/grid/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/profiles/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/error/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/templates/grid/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/client/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/janelia/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/matplotlib/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/ncsa_paledit/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/seaborn/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/luts/wcif/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/analysis_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/annotation_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/export_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/figure_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/import_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/scripts/omero/util_scripts/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/lib/server/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/misc/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__1/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__10/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__2/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/var/
16:30:52 creating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/var/tmp/
16:30:52 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/LICENSE.txt
16:30:52 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/backup.cfg
16:30:52 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/mail-senders.example
16:30:52 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/etc/blitz/mail-server.example
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16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/path.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/pil.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/postgresql.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/psf-v2.0.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/psf-v2.5.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/scons.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/slf4j.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/tablelayout.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/which.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/zlib-libpng.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/share/licenses/zpl-v2.1.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/README.txt
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/misc/Makefile
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/misc/current.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/misc/enums.py
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__10/OMERO3A__9.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__10.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__2/OMERO3A__1.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
16:31:07 inflating: OMERO.server-5.6.3-614-b7d1771417-ice36-b2/sql/psql/OMERO5.4__0/views.sql
16:31:08 + rm -f OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
16:31:08 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-614-b7d1771417-ice36-b2 /home/omero/workspace/OMERO-training/OMERO.server
16:31:08 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
16:31:08 ++ deactivate nondestructive
16:31:08 ++ '[' -n '' ']'
16:31:08 ++ '[' -n '' ']'
16:31:08 ++ hash -r
16:31:08 ++ '[' -n '' ']'
16:31:08 ++ unset VIRTUAL_ENV
16:31:08 ++ unset VIRTUAL_ENV_PROMPT
16:31:08 ++ '[' '!' nondestructive = nondestructive ']'
16:31:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
16:31:08 ++ export VIRTUAL_ENV
16:31:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:31:08 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:31:08 ++ export PATH
16:31:08 ++ '[' -n '' ']'
16:31:08 ++ '[' -z '' ']'
16:31:08 ++ _OLD_VIRTUAL_PS1=
16:31:08 ++ PS1='(.venv3) '
16:31:08 ++ export PS1
16:31:08 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
16:31:08 ++ export VIRTUAL_ENV_PROMPT
16:31:08 ++ hash -r
16:31:08 + for x in *.gz
16:31:08 + pip install omero_dropbox-5.7.1.dev0.tar.gz
16:31:08 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
16:31:08 Installing build dependencies: started
16:31:10 Installing build dependencies: finished with status 'done'
16:31:10 Getting requirements to build wheel: started
16:31:10 Getting requirements to build wheel: finished with status 'done'
16:31:10 Preparing metadata (pyproject.toml): started
16:31:10 Preparing metadata (pyproject.toml): finished with status 'done'
16:31:10 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
16:31:10 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
16:31:11 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
16:31:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
16:31:11 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
16:31:11 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
16:31:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
16:31:11 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
16:31:11 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
16:31:11 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
16:31:11 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
16:31:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
16:31:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
16:31:11 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
16:31:11 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
16:31:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
16:31:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
16:31:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
16:31:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
16:31:11 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
16:31:11 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
16:31:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
16:31:11 Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:31:11 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
16:31:11 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
16:31:11 Building wheels for collected packages: omero-dropbox
16:31:11 Building wheel for omero-dropbox (pyproject.toml): started
16:31:11 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
16:31:11 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=f2dd7a5902a96814a48c6eddd543bd01b4a5d5d5b879ffe89fb4e310739fe14e
16:31:11 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
16:31:11 Successfully built omero-dropbox
16:31:12 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
16:31:38
16:31:38 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.22.1 portalocker-3.2.0
16:31:38 + for x in *.gz
16:31:38 + pip install omero_marshal-0.9.2.dev0.tar.gz
16:31:39 Processing ./omero_marshal-0.9.2.dev0.tar.gz
16:31:39 Installing build dependencies: started
16:31:40 Installing build dependencies: finished with status 'done'
16:31:40 Getting requirements to build wheel: started
16:31:41 Getting requirements to build wheel: finished with status 'done'
16:31:41 Preparing metadata (pyproject.toml): started
16:31:41 Preparing metadata (pyproject.toml): finished with status 'done'
16:31:41 Building wheels for collected packages: omero_marshal
16:31:41 Building wheel for omero_marshal (pyproject.toml): started
16:31:41 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
16:31:41 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=9eed2ad14e317d20778b3b6670e37522fe6ec3b460bb81ac7c8cfaffa2bc4f65
16:31:41 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
16:31:41 Successfully built omero_marshal
16:31:42 Installing collected packages: omero_marshal
16:31:44 Successfully installed omero_marshal-0.9.2.dev0
16:31:44 + for x in *.gz
16:31:44 + pip install omero_py-5.22.2.dev0.tar.gz
16:31:45 Processing ./omero_py-5.22.2.dev0.tar.gz
16:31:45 Installing build dependencies: started
16:31:47 Installing build dependencies: finished with status 'done'
16:31:47 Getting requirements to build wheel: started
16:31:47 Getting requirements to build wheel: finished with status 'done'
16:31:47 Preparing metadata (pyproject.toml): started
16:31:47 Preparing metadata (pyproject.toml): finished with status 'done'
16:31:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
16:31:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
16:31:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
16:31:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
16:31:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
16:31:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
16:31:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
16:31:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
16:31:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
16:31:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
16:31:47 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
16:31:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
16:31:47 Building wheels for collected packages: omero-py
16:31:47 Building wheel for omero-py (pyproject.toml): started
16:31:48 Building wheel for omero-py (pyproject.toml): finished with status 'done'
16:31:48 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=39866d749f2a1e17cfa9d21d9e68232af1be4bd673eecc6c8aa9073804f10dfe
16:31:48 Stored in directory: /home/omero/.cache/pip/wheels/67/6d/a0/54908d8e3aee8366415fea8426f418a6717addeb1669d2e673
16:31:48 Successfully built omero-py
16:31:49 Installing collected packages: omero-py
16:31:49 Attempting uninstall: omero-py
16:31:49 Found existing installation: omero-py 5.22.1
16:31:49 Uninstalling omero-py-5.22.1:
16:31:56 Successfully uninstalled omero-py-5.22.1
16:32:13 Successfully installed omero-py-5.22.2.dev0
16:32:13 + for x in *.gz
16:32:13 + pip install omero_scripts-5.10.1.dev0.tar.gz
16:32:13 Processing ./omero_scripts-5.10.1.dev0.tar.gz
16:32:13 Installing build dependencies: started
16:32:15 Installing build dependencies: finished with status 'done'
16:32:15 Getting requirements to build wheel: started
16:32:15 Getting requirements to build wheel: finished with status 'done'
16:32:15 Preparing metadata (pyproject.toml): started
16:32:15 Preparing metadata (pyproject.toml): finished with status 'done'
16:32:15 Building wheels for collected packages: omero-scripts
16:32:15 Building wheel for omero-scripts (pyproject.toml): started
16:32:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
16:32:15 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=e18a5e18fc8e513340f989bbbaa6bfe5733d8ded75b6339642cb494117eb2cbd
16:32:15 Stored in directory: /home/omero/.cache/pip/wheels/88/2f/31/9478f1cef9d86ee7a706f3c8d94d67d22081ff846c64d43aa0
16:32:16 Successfully built omero-scripts
16:32:16 Installing collected packages: omero-scripts
16:32:17 Successfully installed omero-scripts-5.10.1.dev0
16:32:17 + for x in *.gz
16:32:17 + pip install omero_web-5.32.1.dev0.tar.gz
16:32:17 Processing ./omero_web-5.32.1.dev0.tar.gz
16:32:18 Installing build dependencies: started
16:32:19 Installing build dependencies: finished with status 'done'
16:32:19 Getting requirements to build wheel: started
16:32:19 Getting requirements to build wheel: finished with status 'done'
16:32:19 Preparing metadata (pyproject.toml): started
16:32:20 Preparing metadata (pyproject.toml): finished with status 'done'
16:32:20 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
16:32:20 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
16:32:20 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
16:32:20 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
16:32:20 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
16:32:20 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
16:32:20 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
16:32:20 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
16:32:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
16:32:20 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
16:32:20 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
16:32:20 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
16:32:20 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
16:32:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
16:32:20 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
16:32:20 Collecting pytz (from omero-web==5.32.1.dev0)
16:32:20 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
16:32:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
16:32:20 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
16:32:20 Collecting importlib-resources (from omero-web==5.32.1.dev0)
16:32:20 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
16:32:20 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
16:32:20 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
16:32:20 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
16:32:21 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
16:32:21 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
16:32:21 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
16:32:21 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
16:32:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
16:32:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
16:32:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
16:32:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
16:32:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
16:32:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
16:32:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
16:32:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
16:32:21 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
16:32:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
16:32:21 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
16:32:21 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
16:32:21 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
16:32:21 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
16:32:21 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
16:32:21 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
16:32:21 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
16:32:21 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
16:32:21 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
16:32:21 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
16:32:21 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
16:32:21 Building wheels for collected packages: omero-web
16:32:21 Building wheel for omero-web (pyproject.toml): started
16:32:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
16:32:22 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=ad1666dbd4d0c4ede0f442dd0f714ebd92bce6a8ce28bb0b45b946dedd94a934
16:32:22 Stored in directory: /home/omero/.cache/pip/wheels/91/ad/79/ec318377d2e814ec25bf29bc612d81f9a885cbc4aa52a338d5
16:32:22 Successfully built omero-web
16:32:22 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
16:33:39
16:33:39 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
16:33:39 + cd /home/omero/workspace/OMERO-training/OMERO.server
16:33:39 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
16:33:39 + HOSTNAME=927cea5d248f
16:33:39 + PORT=4064
16:33:39 + WEBHOST=http://nginx/web
16:33:39 + SERVER_NAME=omero
16:33:39 + ROOT_PASSWORD=omero
16:33:39 + GROUP_NAME=training_group
16:33:39 + GROUP_NAME_2=training_group-2
16:33:39 + USER_NAME=training_user
16:33:39 + USER_NAME_2=training_user-2
16:33:39 + LIGHTADMIN_USER_NAME=ladmin_user
16:33:39 + USER_PASSWORD=ome
16:33:39 + CONFIG_FILENAME=training_ice.config
16:33:39 + omero login root@927cea5d248f:4064 -w omero
16:33:42 Created session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:42 + omero group add training_group --type read-only --ignore-existing
16:33:44 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:44 Added group training_group (id=3) with permissions rwr---
16:33:44 + omero group add training_group-2 --type read-only --ignore-existing
16:33:46 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:46 Added group training_group-2 (id=4) with permissions rwr---
16:33:46 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
16:33:48 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:49 Added user training_user (id=2) with password
16:33:49 + omero user joingroup --name training_user --group-name training_group training_group-2
16:33:51 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:51 2 is already in group 3
16:33:51 2 is already in group 4
16:33:51 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
16:33:53 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:53 Added user training_user-2 (id=3) with password
16:33:53 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
16:33:55 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:55 3 is already in group 3
16:33:55 3 is already in group 4
16:33:56 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
16:33:58 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:33:58 Added user ladmin_user (id=4) with password
16:33:58 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
16:34:00 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:34:00 4 is already in group 3
16:34:00 4 is already in group 4
16:34:00 ++ omero user info ladmin_user --style plain
16:34:00 ++ cut -d, -f1
16:34:02 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:34:02 + id=4
16:34:02 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
16:34:04 Using session for root@927cea5d248f:4064. Idle timeout: 10 min. Current group: system
16:34:04 Experimenter:4
16:34:05 + omero logout
16:34:07 + touch test.fake
16:34:07 + omero login training_user@927cea5d248f:4064 -w ome -g training_group
16:34:09 Created session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:09 + nProjects=1
16:34:09 + nDatasets=2
16:34:09 + echo 'Creating projects and datasets'
16:34:09 Creating projects and datasets
16:34:09 + (( i=1 ))
16:34:09 + (( i<=1 ))
16:34:09 ++ omero obj new Project 'name=Project 1'
16:34:11 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:11 + project=Project:1
16:34:11 + (( j=1 ))
16:34:11 + (( j<=2 ))
16:34:11 ++ omero obj new Dataset 'name=Dataset 1-1'
16:34:13 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:13 + dataset=Dataset:1
16:34:13 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:1
16:34:16 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:16 ProjectDatasetLink:1
16:34:16 + echo 'Importing image into dataset'
16:34:16 Importing image into dataset
16:34:16 + omero import -d Dataset:1 test.fake --debug ERROR
16:34:18 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:19 Jul 07, 2026 4:34:19 PM java.util.prefs.FileSystemPreferences$1 run
16:34:19 INFO: Created user preferences directory.
16:34:19 2026-07-07 16:34:19,828 394 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
16:34:19 2026-07-07 16:34:19,846 412 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
16:34:25 Image:1
16:34:25 Other imported objects:
16:34:25 Fileset:1
16:34:25
16:34:25 ==> Summary
16:34:25 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.104
16:34:25 + (( j++ ))
16:34:25 + (( j<=2 ))
16:34:25 ++ omero obj new Dataset 'name=Dataset 1-2'
16:34:27 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:27 + dataset=Dataset:2
16:34:27 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:2
16:34:29 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:29 ProjectDatasetLink:2
16:34:30 + echo 'Importing image into dataset'
16:34:30 Importing image into dataset
16:34:30 + omero import -d Dataset:2 test.fake --debug ERROR
16:34:32 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:32 2026-07-07 16:34:32,765 217 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
16:34:32 2026-07-07 16:34:32,778 230 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
16:34:36 Image:2
16:34:36 Other imported objects:
16:34:36 Fileset:2
16:34:36
16:34:36 ==> Summary
16:34:36 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.809
16:34:37 + (( j++ ))
16:34:37 + (( j<=2 ))
16:34:37 + (( i++ ))
16:34:37 + (( i<=1 ))
16:34:37 + (( j=1 ))
16:34:37 + (( j<=2 ))
16:34:37 + omero obj new Dataset 'name=Orphaned dataset 1'
16:34:39 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:39 Dataset:3
16:34:39 + (( j++ ))
16:34:39 + (( j<=2 ))
16:34:39 + omero obj new Dataset 'name=Orphaned dataset 2'
16:34:41 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:41 Dataset:4
16:34:41 + (( j++ ))
16:34:41 + (( j<=2 ))
16:34:41 + echo 'Importing image file'
16:34:41 Importing image file
16:34:41 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
16:34:41 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
16:34:47 ++ sed -n -e 's/^Image://p' image_import.log
16:34:47 + imageid=3
16:34:47 ++ omero obj new MapAnnotation
16:34:49 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:49 + MAP=MapAnnotation:1
16:34:49 + omero obj map-set MapAnnotation:1 mapValue testkey testvalue
16:34:51 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:52 MapAnnotation:1
16:34:52 + omero obj new ImageAnnotationLink parent=Image:3 child=MapAnnotation:1
16:34:54 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:54 ImageAnnotationLink:1
16:34:54 ++ omero obj new Screen name=Screen
16:34:56 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:56 + screen=Screen:1
16:34:56 ++ omero obj new Plate name=Plate
16:34:58 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:34:59 + plate=Plate:1
16:34:59 + omero obj new ScreenPlateLink parent=Screen:1 child=Plate:1
16:35:01 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:01 ScreenPlateLink:1
16:35:01 + echo 'Importing SPW file'
16:35:01 Importing SPW file
16:35:01 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
16:35:01 + omero import -r Screen:1 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
16:35:09 ++ sed -n -e 's/^Plate://p' plate_import.log
16:35:09 + plateid=2
16:35:09 + omero logout
16:35:12 + omero login training_user-2@927cea5d248f:4064 -w ome -g training_group
16:35:14 Created session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:14 + omero obj new Project 'name=Project 0'
16:35:16 Using session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:16 Project:2
16:35:16 + omero obj new Dataset 'name=Dataset 0'
16:35:18 Using session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:18 Dataset:5
16:35:18 + omero import test.fake --debug ERROR
16:35:20 Using session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:21 2026-07-07 16:35:21,586 213 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
16:35:21 2026-07-07 16:35:21,599 226 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
16:35:23 Image:7
16:35:23 Other imported objects:
16:35:23 Fileset:5
16:35:23
16:35:23 ==> Summary
16:35:23 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.003
16:35:24 + omero obj new Screen name=Screen
16:35:26 Using session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:26 Screen:2
16:35:26 + omero obj new Plate name=Plate
16:35:28 Using session for training_user-2@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group
16:35:28 Plate:3
16:35:28 + omero login training_user@927cea5d248f:4064 -w ome -g training_group-2
16:35:30 Created session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:30 + omero obj new Project 'name=Project 0'
16:35:32 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:32 Project:3
16:35:32 + omero obj new Dataset 'name=Dataset 0'
16:35:34 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:34 Dataset:6
16:35:35 + omero import test.fake --debug ERROR
16:35:37 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:37 2026-07-07 16:35:37,731 222 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
16:35:37 2026-07-07 16:35:37,744 235 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
16:35:41 Image:8
16:35:41 Other imported objects:
16:35:41 Fileset:6
16:35:41
16:35:41 ==> Summary
16:35:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.036
16:35:41 + omero obj new Screen name=Screen
16:35:44 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:44 Screen:3
16:35:44 + omero obj new Plate name=Plate
16:35:46 Using session for training_user@927cea5d248f:4064. Idle timeout: 10 min. Current group: training_group-2
16:35:46 Plate:4
16:35:46 + omero logout
16:35:48 + echo omero.host=927cea5d248f
16:35:48 + echo omero.port=4064
16:35:48 + echo omero.webhost=http://nginx/web
16:35:48 + echo omero.servername=omero
16:35:48 + echo omero.user=training_user
16:35:48 + echo omero.pass=ome
16:35:48 + echo omero.group=training_group
16:35:48 + echo omero.projectid=1
16:35:48 + echo omero.datasetid=2
16:35:48 + echo omero.imageid=3
16:35:48 + echo omero.plateid=2
16:35:48 + echo omero.screenid=1
16:35:48 + echo omero.group2=training_group-2
16:35:48 + echo omero.ladmin=ladmin_user
16:35:48 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
16:35:48 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
16:35:48 + omero sessions clear
16:35:50 1 session(s) cleared
16:35:50 !! 07/07/26 16:35:50.250 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
16:35:50 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
16:35:50 + pip install --upgrade requests
16:35:51 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.34.2)
16:35:51 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.9)
16:35:51 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.18)
16:35:51 Requirement already satisfied: urllib3<3,>=1.26 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.7.0)
16:35:51 Requirement already satisfied: certifi>=2023.5.7 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.6.17)
16:35:51 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
16:36:01 Running training suite
16:36:01 created 20 shapes
16:36:01 retrieved 20 shapes in 4 batches
16:36:01 Current user:
16:36:01 ID: 2
16:36:01 Username: training_user
16:36:01 Full Name: training_user training_user
16:36:01 Is Admin: False
16:36:01 []
16:36:01 Member of:
16:36:01 ID: 3 Name: training_group
16:36:01 ID: 4 Name: training_group-2
16:36:01 Current group: training_group
16:36:01 Group owners:
16:36:01 Group members:
16:36:01 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
16:36:01 ID: 2 UserName: training_user Name: training_user training_user
16:36:01 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
16:36:01 Owner of:
16:36:01 Admins:
16:36:01 ID: 0 UserName: root Name: root root
16:36:01 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
16:36:01 Created new Image:9 Name:"numpy image"
16:36:01 newPlane for z,t: 0 0 uint8 0 127
16:36:01 newPlane for z,t: 0 1 uint8 0 127
16:36:01 newPlane for z,t: 0 2 uint8 0 127
16:36:01 newPlane for z,t: 0 3 uint8 0 127
16:36:01 newPlane for z,t: 0 4 uint8 0 127
16:36:01 newPlane for z,t: 0 5 uint8 0 127
16:36:01 newPlane for z,t: 0 6 uint8 0 127
16:36:01 newPlane for z,t: 0 7 uint8 0 127
16:36:01 newPlane for z,t: 0 8 uint8 0 127
16:36:01 newPlane for z,t: 0 9 uint8 0 127
16:36:01 newPlane for z,t: 1 0 uint8 0 127
16:36:01 newPlane for z,t: 1 1 uint8 0 127
16:36:01 newPlane for z,t: 1 2 uint8 0 127
16:36:01 newPlane for z,t: 1 3 uint8 0 127
16:36:01 newPlane for z,t: 1 4 uint8 0 127
16:36:01 newPlane for z,t: 1 5 uint8 0 127
16:36:01 newPlane for z,t: 1 6 uint8 0 127
16:36:01 newPlane for z,t: 1 7 uint8 0 127
16:36:01 newPlane for z,t: 1 8 uint8 0 127
16:36:01 newPlane for z,t: 1 9 uint8 0 127
16:36:01 newPlane for z,t: 2 0 uint8 0 127
16:36:01 newPlane for z,t: 2 1 uint8 0 127
16:36:01 newPlane for z,t: 2 2 uint8 0 127
16:36:01 newPlane for z,t: 2 3 uint8 0 127
16:36:01 newPlane for z,t: 2 4 uint8 0 127
16:36:01 newPlane for z,t: 2 5 uint8 0 127
16:36:01 newPlane for z,t: 2 6 uint8 0 127
16:36:01 newPlane for z,t: 2 7 uint8 0 127
16:36:01 newPlane for z,t: 2 8 uint8 0 127
16:36:01 newPlane for z,t: 2 9 uint8 0 127
16:36:01 newPlane for z,t: 3 0 uint8 0 127
16:36:01 newPlane for z,t: 3 1 uint8 0 127
16:36:01 newPlane for z,t: 3 2 uint8 0 127
16:36:01 newPlane for z,t: 3 3 uint8 0 127
16:36:01 newPlane for z,t: 3 4 uint8 0 127
16:36:01 newPlane for z,t: 3 5 uint8 0 127
16:36:01 newPlane for z,t: 3 6 uint8 0 127
16:36:01 newPlane for z,t: 3 7 uint8 0 127
16:36:01 newPlane for z,t: 3 8 uint8 0 127
16:36:01 newPlane for z,t: 3 9 uint8 0 127
16:36:01 newPlane for z,t: 4 0 uint8 0 127
16:36:01 newPlane for z,t: 4 1 uint8 0 127
16:36:01 newPlane for z,t: 4 2 uint8 0 127
16:36:01 newPlane for z,t: 4 3 uint8 0 127
16:36:01 newPlane for z,t: 4 4 uint8 0 127
16:36:01 newPlane for z,t: 4 5 uint8 0 127
16:36:01 newPlane for z,t: 4 6 uint8 0 127
16:36:01 newPlane for z,t: 4 7 uint8 0 127
16:36:01 newPlane for z,t: 4 8 uint8 0 127
16:36:01 newPlane for z,t: 4 9 uint8 0 127
16:36:01 Deleting, please wait.
16:36:01 Error? False
16:36:01 3 test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:01 training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2026-07/07/16-34-45.574/ test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:01 1
16:36:01 training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2026-07/07/16-34-45.574/ test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:01 Current group: training_group
16:36:01 Permissions: READ-ONLY (rwr---)
16:36:01 Project 1 Owner: training_user training_user
16:36:01 Project 0 Owner: training_user-2 training_user-2
16:36:01 Image: <_ImageWrapper id=3>
16:36:01 Image: <_ImageWrapper id=3> Group: training_group 3
16:36:01 Image: <_ImageWrapper id=3> Channel: 0
16:36:01 Channel: 1
16:36:01 Channel: 2
16:36:01
16:36:01
16:36:01 original_metadata
16:36:01 global_metadata
16:36:01 series_metadata
16:36:01
16:36:01 Plane at zct: 0 0 0
16:36:01 [[ 0 0 0 ... 253 254 255]
16:36:01 [ 0 0 0 ... 253 254 255]
16:36:01 [ 0 0 0 ... 253 254 255]
16:36:01 ...
16:36:01 [ 0 1 2 ... 253 254 255]
16:36:01 [ 0 1 2 ... 253 254 255]
16:36:01 [ 0 1 2 ... 253 254 255]]
16:36:01 shape: (512, 512)
16:36:01 min: 0 max: 255 pixel type: uint8
16:36:01
16:36:01 Z stack of tiles:
16:36:01 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
16:36:01 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
16:36:01 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
16:36:01 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
16:36:01 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
16:36:01
16:36:01 Hyper stack of planes:
16:36:01 plane zct: (2, 0, 0) min: 0 max: 255
16:36:01 plane zct: (2, 0, 1) min: 0 max: 255
16:36:01 plane zct: (2, 0, 2) min: 0 max: 255
16:36:01 plane zct: (2, 0, 3) min: 0 max: 255
16:36:01 plane zct: (2, 0, 4) min: 0 max: 255
16:36:01 plane zct: (2, 0, 5) min: 0 max: 255
16:36:01 plane zct: (2, 0, 6) min: 0 max: 255
16:36:01 plane zct: (2, 0, 7) min: 0 max: 255
16:36:01 plane zct: (2, 0, 8) min: 0 max: 255
16:36:01 plane zct: (2, 0, 9) min: 0 max: 255
16:36:01 plane zct: (2, 1, 0) min: 0 max: 255
16:36:01 plane zct: (2, 1, 1) min: 0 max: 255
16:36:01 plane zct: (2, 1, 2) min: 0 max: 255
16:36:01 plane zct: (2, 1, 3) min: 0 max: 255
16:36:01 plane zct: (2, 1, 4) min: 0 max: 255
16:36:01 plane zct: (2, 1, 5) min: 0 max: 255
16:36:01 plane zct: (2, 1, 6) min: 0 max: 255
16:36:01 plane zct: (2, 1, 7) min: 0 max: 255
16:36:01 plane zct: (2, 1, 8) min: 0 max: 255
16:36:01 plane zct: (2, 1, 9) min: 0 max: 255
16:36:01 plane zct: (2, 2, 0) min: 0 max: 255
16:36:01 plane zct: (2, 2, 1) min: 0 max: 255
16:36:01 plane zct: (2, 2, 2) min: 0 max: 255
16:36:01 plane zct: (2, 2, 3) min: 0 max: 255
16:36:01 plane zct: (2, 2, 4) min: 0 max: 255
16:36:01 plane zct: (2, 2, 5) min: 0 max: 255
16:36:01 plane zct: (2, 2, 6) min: 0 max: 255
16:36:01 plane zct: (2, 2, 7) min: 0 max: 255
16:36:01 plane zct: (2, 2, 8) min: 0 max: 255
16:36:01 plane zct: (2, 2, 9) min: 0 max: 255
16:36:01 plane zct: (3, 0, 0) min: 0 max: 255
16:36:01 plane zct: (3, 0, 1) min: 0 max: 255
16:36:01 plane zct: (3, 0, 2) min: 0 max: 255
16:36:01 plane zct: (3, 0, 3) min: 0 max: 255
16:36:01 plane zct: (3, 0, 4) min: 0 max: 255
16:36:01 plane zct: (3, 0, 5) min: 0 max: 255
16:36:01 plane zct: (3, 0, 6) min: 0 max: 255
16:36:01 plane zct: (3, 0, 7) min: 0 max: 255
16:36:01 plane zct: (3, 0, 8) min: 0 max: 255
16:36:01 plane zct: (3, 0, 9) min: 0 max: 255
16:36:01 plane zct: (3, 1, 0) min: 0 max: 255
16:36:01 plane zct: (3, 1, 1) min: 0 max: 255
16:36:01 plane zct: (3, 1, 2) min: 0 max: 255
16:36:01 plane zct: (3, 1, 3) min: 0 max: 255
16:36:01 plane zct: (3, 1, 4) min: 0 max: 255
16:36:01 plane zct: (3, 1, 5) min: 0 max: 255
16:36:01 plane zct: (3, 1, 6) min: 0 max: 255
16:36:01 plane zct: (3, 1, 7) min: 0 max: 255
16:36:01 plane zct: (3, 1, 8) min: 0 max: 255
16:36:01 plane zct: (3, 1, 9) min: 0 max: 255
16:36:01 plane zct: (3, 2, 0) min: 0 max: 255
16:36:01 plane zct: (3, 2, 1) min: 0 max: 255
16:36:01 plane zct: (3, 2, 2) min: 0 max: 255
16:36:01 plane zct: (3, 2, 3) min: 0 max: 255
16:36:01 plane zct: (3, 2, 4) min: 0 max: 255
16:36:01 plane zct: (3, 2, 5) min: 0 max: 255
16:36:01 plane zct: (3, 2, 6) min: 0 max: 255
16:36:01 plane zct: (3, 2, 7) min: 0 max: 255
16:36:01 plane zct: (3, 2, 8) min: 0 max: 255
16:36:01 plane zct: (3, 2, 9) min: 0 max: 255
16:36:01 plane zct: (4, 0, 0) min: 0 max: 255
16:36:01 plane zct: (4, 0, 1) min: 0 max: 255
16:36:01 plane zct: (4, 0, 2) min: 0 max: 255
16:36:01 plane zct: (4, 0, 3) min: 0 max: 255
16:36:01 plane zct: (4, 0, 4) min: 0 max: 255
16:36:01 plane zct: (4, 0, 5) min: 0 max: 255
16:36:01 plane zct: (4, 0, 6) min: 0 max: 255
16:36:01 plane zct: (4, 0, 7) min: 0 max: 255
16:36:01 plane zct: (4, 0, 8) min: 0 max: 255
16:36:01 plane zct: (4, 0, 9) min: 0 max: 255
16:36:01 plane zct: (4, 1, 0) min: 0 max: 255
16:36:01 plane zct: (4, 1, 1) min: 0 max: 255
16:36:01 plane zct: (4, 1, 2) min: 0 max: 255
16:36:01 plane zct: (4, 1, 3) min: 0 max: 255
16:36:01 plane zct: (4, 1, 4) min: 0 max: 255
16:36:01 plane zct: (4, 1, 5) min: 0 max: 255
16:36:01 plane zct: (4, 1, 6) min: 0 max: 255
16:36:01 plane zct: (4, 1, 7) min: 0 max: 255
16:36:01 plane zct: (4, 1, 8) min: 0 max: 255
16:36:01 plane zct: (4, 1, 9) min: 0 max: 255
16:36:01 plane zct: (4, 2, 0) min: 0 max: 255
16:36:01 plane zct: (4, 2, 1) min: 0 max: 255
16:36:01 plane zct: (4, 2, 2) min: 0 max: 255
16:36:01 plane zct: (4, 2, 3) min: 0 max: 255
16:36:01 plane zct: (4, 2, 4) min: 0 max: 255
16:36:01 plane zct: (4, 2, 5) min: 0 max: 255
16:36:01 plane zct: (4, 2, 6) min: 0 max: 255
16:36:01 plane zct: (4, 2, 7) min: 0 max: 255
16:36:01 plane zct: (4, 2, 8) min: 0 max: 255
16:36:01 plane zct: (4, 2, 9) min: 0 max: 255
16:36:01 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
16:36:17
16:36:17 List Projects:
16:36:17 ==================================================
16:36:17 Project:1 Name:"Project 1" (owner=training_user)
16:36:17 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
16:36:17 Image:1 Name:"test.fake" (owner=training_user)
16:36:17 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
16:36:17 Image:2 Name:"test.fake" (owner=training_user)
16:36:17
16:36:17 List orphaned Datasets:
16:36:17 ==================================================
16:36:17 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
16:36:17 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
16:36:17 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
16:36:17
16:36:17 Images in Dataset: 2
16:36:17 ==================================================
16:36:17 Image:2 Name:"test.fake" (owner=training_user)
16:36:17
16:36:17 Image:3
16:36:17 ==================================================
16:36:17 test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:17 X: 512
16:36:17 Y: 512
16:36:17 Z: 5
16:36:17 C: 3
16:36:17 T: 10
16:36:17 Channel: 0 Color: (255, 0, 0)
16:36:17 Lookup table: None
16:36:17 Is reverse intensity? False
16:36:17 Channel: 1 Color: (0, 255, 0)
16:36:17 Lookup table: None
16:36:17 Is reverse intensity? False
16:36:17 Channel: 2 Color: (0, 0, 255)
16:36:17 Lookup table: None
16:36:17 Is reverse intensity? False
16:36:17 Pixel Size X: None
16:36:17
16:36:17 List Screens:
16:36:17 ==================================================
16:36:17 Screen:1 Name:"Screen" (owner=training_user)
16:36:17 Plate:1 Name:"Plate" (owner=training_user)
16:36:17 Plate:2 Name:"Plate Name 0" (owner=training_user)
16:36:17 Screen:2 Name:"Screen" (owner=training_user-2)
16:36:17
16:36:17 Plate:2
16:36:17 ==================================================
16:36:17
16:36:17 Number of fields: (0, 0)
16:36:17
16:36:17 Grid size: {'rows': 1, 'columns': 3}
16:36:17
16:36:17 Wells in Plate: Plate Name 0
16:36:17 Well: 0 0 Fields: 1
16:36:17 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 4
16:36:17 Well: 0 1 Fields: 1
16:36:17 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 5
16:36:17 Well: 0 2 Fields: 1
16:36:17 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 6
16:36:17 1 <class 'omero.model.MapAnnotationI'>
16:36:17 added by training_user
16:36:17 Image ID: 3
16:36:17 Annotation ID: 1
16:36:17 3
16:36:17 Channel rendering settings:
16:36:17 Name: 0
16:36:17 Color: FF0000
16:36:17 Active: True
16:36:17 Levels: 0.0 - 255.0
16:36:17 Name: 1
16:36:17 Color: 00FF00
16:36:17 Active: True
16:36:17 Levels: 0.0 - 255.0
16:36:17 Name: 2
16:36:17 Color: 0000FF
16:36:17 Active: True
16:36:17 Levels: 0.0 - 255.0
16:36:17 isGreyscaleRenderingModel: False
16:36:17 Default Z/T positions:
16:36:17 Z = 2, T = 0
16:36:17 Rendering Defs on Image:
16:36:17 ID: 3 (owner: training_user training_user)
16:36:17 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
16:36:17 ROI: ID: 2
16:36:17 Shape: id 21 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
16:36:17 Shape: id 22 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
16:36:17 ROI: ID: 3
16:36:17 Shape: id 23 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
16:36:17 ROI: ID: 4
16:36:17 Shape: id 24 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
16:36:17 ROI: ID: 5
16:36:17 Shape: id 25 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
16:36:17 ROI: ID: 6
16:36:17 <class 'omero.model.PolygonI'> Not supported by this code
16:36:17 Shape: id 26 theT 0 theZ 2 textValue test-Polygon
16:36:17 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
16:36:17 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
16:36:17 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
16:36:17 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
16:36:17 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
16:36:17 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
16:36:17 Removing Shape from ROI...
16:36:17 Deleting ROI: 7
16:36:17 Table Columns:
16:36:17 Uid
16:36:17 MyStringColumnInit
16:36:17 Row count: 10
16:36:17
16:36:17 Get All Data for rows: [3, 5, 7]
16:36:17 Data for Column: Uid
16:36:17 1
16:36:17 2
16:36:17 3
16:36:17 4
16:36:17 5
16:36:17 6
16:36:17 7
16:36:17 8
16:36:17 9
16:36:17 10
16:36:17 Data for Column: MyStringColumnInit
16:36:17 one
16:36:17 two
16:36:17 three
16:36:17 four
16:36:17 five
16:36:17 six
16:36:17 seven
16:36:17 eight
16:36:17 nine
16:36:17 ten
16:36:17
16:36:17 Get All Data for rows with slice: [3, 5, 7]
16:36:17 Data for Column: Uid
16:36:17 4
16:36:17 6
16:36:17 8
16:36:17 Data for Column: MyStringColumnInit
16:36:17 four
16:36:17 six
16:36:17 eight
16:36:17
16:36:17 Get Data for cols: [1] and between rows: 3 - 7
16:36:17 Data for Column: MyStringColumnInit
16:36:17 four
16:36:17 five
16:36:17 six
16:36:17 seven
16:36:17
16:36:17 Get Data for cols: [1] and between rows: 3 - 7 with slice
16:36:17 Data for Column: MyStringColumnInit
16:36:17 four
16:36:17 five
16:36:17 six
16:36:17 seven
16:36:17 Query Results for Column: Uid
16:36:17 3
16:36:17 4
16:36:17 5
16:36:17 6
16:36:17 7
16:36:17 8
16:36:17 Query Results for Column: MyStringColumnInit
16:36:17 three
16:36:17 four
16:36:17 five
16:36:17 six
16:36:17 seven
16:36:17 eight
16:36:17 Opened table with row-count: 10
16:36:17 New dataset, Id: 7
16:36:17 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
16:36:17 5 <class 'omero.model.TagAnnotationI'> added by training_user
16:36:17 Tag value: New Tag
16:36:17 6 <class 'omero.model.MapAnnotationI'> added by training_user
16:36:17
16:36:17 Creating an OriginalFile and FileAnnotation
16:36:17 Attaching FileAnnotation to Dataset: File ID: 7 , README.txt Size: 15
16:36:17
16:36:17 Annotations on Dataset: New Dataset
16:36:17 File ID: 131 README.txt Size: 15
16:36:17
16:36:17 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
16:36:17 File downloaded!
16:36:17 7 README.txt
16:36:17 Found Annotation with namespace: imperial.training.demo
16:36:17 Plane: 0 0 0
16:36:17 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
16:36:17 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
16:36:17
16:36:17 List Datasets:
16:36:17 ID: 8 Name: MyDataset
16:36:17 ID: 9 Name: MyDataset
16:36:17 ID: 10 Name: MyDataset
16:36:17
16:36:17 List Tags:
16:36:17 ID: 8 Text: MyTag Desc: MyTag 0
16:36:17 ID: 9 Text: MyTag Desc: MyTag 1
16:36:17 ID: 10 Text: MyTag Desc: MyTag 2
16:36:17 New dataset, Id: 11
16:36:17 New dataset 2, Id: 12
16:36:17 test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:17 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
16:36:17 [[ 0 0 0 ... 102 103 104]
16:36:17 [ 0 0 0 ... 102 103 104]
16:36:17 [ 0 0 0 ... 102 103 104]
16:36:17 ...
16:36:17 [ 5 6 7 ... 102 103 104]
16:36:17 [ 5 6 7 ... 102 103 104]
16:36:17 [ 5 6 7 ... 102 103 104]]
16:36:17 shape: (100, 100)
16:36:17 min: 0 max: 104 pixel type: uint8
16:36:17 Average : 53.9125
16:36:17 Getting data for T, tile: 0 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 1 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 2 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 3 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 4 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 5 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 6 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 7 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 8 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 9 (256, 0, 10, 512)
16:36:17 kymograph_data (512, 100)
16:36:17 Attaching kymograph.png to image
16:36:17 test&sizeT=10&sizeZ=5&sizeC=3.fake
16:36:17 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
16:36:17 [[ 0 0 0 ... 102 103 104]
16:36:17 [ 0 0 0 ... 102 103 104]
16:36:17 [ 0 0 0 ... 102 103 104]
16:36:17 ...
16:36:17 [ 5 6 7 ... 102 103 104]
16:36:17 [ 5 6 7 ... 102 103 104]
16:36:17 [ 5 6 7 ... 102 103 104]]
16:36:17 shape: (100, 100)
16:36:17 min: 0 max: 104 pixel type: uint8
16:36:17 Average : 53.9125
16:36:17 Getting data for T, tile: 0 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 1 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 2 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 3 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 4 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 5 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 6 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 7 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 8 (256, 0, 10, 512)
16:36:17 Getting data for T, tile: 9 (256, 0, 10, 512)
16:36:17 kymograph_data (512, 100)
16:36:17 Attaching kymograph.png to image
16:36:17 No file downloaded. Project not rated.
16:36:17 New image, Id: 12
16:36:17 Starting at: http://nginx/web/api/
16:36:17 CSRF token 3Z9omoCHDZUOiWN2yrQbZSZzHN0faaSX
16:36:17 Servers:
16:36:17 -id: 1
16:36:17 name: omero
16:36:17 host: omero
16:36:17 port: 4064
16:36:17 -id: 2
16:36:17 name: testintegration
16:36:17 host: testintegration
16:36:17 port: 14064
16:36:17 eventContext {'sessionId': 63, 'sessionUuid': '607bfb30-8473-4f1c-b773-30cf4e71d58a', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
16:36:17 Projects:
16:36:17 2 Project 0
16:36:17 3 Project 0
16:36:17 Created Project: 6 API TEST foo
16:36:17 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/6/datasets/'}}
16:36:17 !! 07/07/26 16:36:17.524 error: communicator not destroyed during global destruction.+ deactivate
16:36:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
16:36:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:36:17 + export PATH
16:36:17 + unset _OLD_VIRTUAL_PATH
16:36:17 + '[' -n '' ']'
16:36:17 + hash -r
16:36:17 + '[' -n '' ']'
16:36:17 + unset VIRTUAL_ENV
16:36:17 + unset VIRTUAL_ENV_PROMPT
16:36:17 + '[' '!' '' = nondestructive ']'
16:36:17 + unset -f deactivate
16:36:17 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
16:36:17 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
16:36:20 Note: Some input files use unchecked or unsafe operations.
16:36:20 Note: Recompile with -Xlint:unchecked for details.
16:36:20 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
16:36:23 omero.cmd.Delete2Response@5ed731d0
16:36:23 omero.cmd.Delete2Response@58e6d4b8
16:36:23 one [class java.lang.String] 1.0 [class java.lang.Double]
16:36:23 two [class java.lang.String] 2.0 [class java.lang.Double]
16:36:23 three [class java.lang.String] 3.0 [class java.lang.Double]
16:36:24 -1.0
16:36:24 0
16:36:24 1
16:36:24 2
16:36:26 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
16:36:26 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 8 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 9 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 12 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 15 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
16:36:26 16 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 20 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 28 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 31 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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16:36:26 235 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
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16:36:26 237 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 238 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 239 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 240 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 241 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 242 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 243 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 244 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 245 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 246 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
16:36:26 Project:1 Project 1
16:36:26 dataset:2 Dataset 1-2
16:36:26 dataset:7 New Dataset
16:36:26 dataset:1 Dataset 1-1
16:36:26 Project:2 Project 0
16:36:26 image:2 test.fake
16:36:26 image:12 New Image
16:36:26 image:13 newImageFrom3
16:36:26 5
16:36:26 10
16:36:26 3
16:36:26 512
16:36:26 512
16:36:26 screen:2 Screen
16:36:26 screen:1 Screen
16:36:26 plate:2 Plate Name 0
16:36:26 plate:1 Plate
16:36:26 well:3
16:36:26 well:1
16:36:26 well:2
16:36:26 plate:1
16:36:26 plate:3
16:36:26 plate:2
16:36:26
16:36:26 List Datasets:
16:36:26 ID: 8 Name: MyDataset
16:36:26 ID: 9 Name: MyDataset
16:36:26 ID: 10 Name: MyDataset
16:36:26 ID: 14 Name: MyDataset
16:36:26 ID: 15 Name: MyDataset
16:36:26 ID: 16 Name: MyDataset
16:36:26
16:36:26 List Tags:
16:36:26 ID: 16 NS: omero.training.demo
16:36:26 ID: 17 NS: omero.training.demo
16:36:26 ID: 18 NS: omero.training.demo
16:36:26 Dataset:9 MyDataset
16:36:26 Dataset:15 MyDataset
16:36:26 Dataset:16 MyDataset
16:36:26 Dataset:3 Orphaned dataset 1
16:36:26 Project:1 Project 1
16:36:26 Dataset:4 Orphaned dataset 2
16:36:26 Dataset:8 MyDataset
16:36:26 Dataset:10 MyDataset
16:36:26 Dataset:13 FileAnnotationDelete
16:36:26 Dataset:11 New Dataset
16:36:26 Dataset:12 New Dataset2
16:36:26 Dataset:14 MyDataset
16:36:26 Size:0
16:36:26 512 512
16:36:27 9
16:36:27 9
16:36:27 1
16:36:28 Logged in as ladmin_user
16:36:28 Added 'training_user's tag' to dataset Dataset 1-1 on behalf of training_user
16:36:28 Added 'ladmin_user's tag' to dataset Dataset 1-1 as admin.
16:36:28 Finished: SUCCESS
