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00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/ant-nodeps-1.8.0.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/ant-trax-1.8.0.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/batik-all-1.8pre-jdk6.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/bufr-1.1.00.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/checkstyle-4.3.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/commons-validator-1.3.1.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/findbugs-ant-1.2.1.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/geronimo-spec-jta-1.0.1B-rc4.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/grib-5.1.03.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/hibernate-core-3.5.6-4510.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/hibernate-jpa-2.0-api-1.0.0.Final.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/hibernate-search-3.1.1.GA.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/hibernate-tools-3.2.0.beta11.jar
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00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/ipython-1.2.1.tar.gz
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/ivy-2.4.0.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/omero-icemock-3.5.1.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/omero-icemock-3.6.3.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/omero.java
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/oro-2.0.8.jar
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/lib/repository/scons-local-2.1.0.zip
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/3-3-2_rgb.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/cividis.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/fire.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/glasbey.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/glasbey_inverted.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/glow.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/grays.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ice.lut
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/janelia/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/janelia/pup_br.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/janelia/pup_nr.lut
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/inferno.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/magma.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/plasma.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/matplotlib/viridis.lut
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/16_colors.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/5_ramps.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/6_shades.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/blue_orange_icb.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/brgbcmyw.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/cool.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/edges.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/gem.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/phase.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/royal.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/sepia.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/smart.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/thal.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/thallium.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/ncsa_paledit/unionjack.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/physics.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/red-green.lut
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/seaborn/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/seaborn/mako.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/seaborn/rocket.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/spectrum.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/thermal.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/turbo.lut
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/cyan_hot.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/green_fire_blue.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/hilo.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/ica.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/ica2.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/ica3.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/magenta_hot.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/orange_hot.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/rainbow_rgb.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/red_hot.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/luts/wcif/yellow_hot.lut
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/omero.class
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/setup.cfg
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/README.txt
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/Makefile
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/current.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/misc/enums.py
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:59:01 creating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/views.sql
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/test.xml
00:59:01 inflating: openmicroscopy-5.6.3-576-122592012b-ice36-b2/update_dependencies.sh
00:59:01 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/antlib/resources/gitversion.xml
00:59:01 extracting: openmicroscopy-5.6.3-576-122592012b-ice36-b2/components/tools/OmeroCpp/cmake/GitVersion.cmake
00:59:01 + rm -f openmicroscopy-5.6.3-576-122592012b-ice36-b2.zip
00:59:01 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-576-122592012b-ice36-b2 /home/omero/workspace/OMERO-training/openmicroscopy
00:59:01 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:59:01 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:59:01 ++ ls OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
00:59:01 + ZIP=OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
00:59:01 + DIST=OMERO.server-5.6.3-576-122592012b-ice36-b2
00:59:01 + unzip -n OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
00:59:01 Archive: OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/grid/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/profiles/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/error/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/janelia/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/matplotlib/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/ncsa_paledit/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/seaborn/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/luts/wcif/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/analysis_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/annotation_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/export_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/figure_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/import_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/scripts/omero/util_scripts/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/var/
00:59:01 creating: OMERO.server-5.6.3-576-122592012b-ice36-b2/var/tmp/
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/LICENSE.txt
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/backup.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/mail-senders.example
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/blitz/mail-server.example
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/build.properties
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/env.bat
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/env.sh
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/hibernate.properties
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/ice.config
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-cli.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-indexing-cli.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback-indexing.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/logback.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/mime.types
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/node1.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/node2.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/omero.properties
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/profiles/psql
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/rollover.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/Windows.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/error/maintainance.html
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/README
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/default.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/templates.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/grid/windefault.xml
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/ice.config
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/internal.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/master.cfg
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/templates/robot.template
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/etc/testdropbox.config
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/history.rst
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/OMEZarrReader.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/accessors-smart.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/activation.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aggdesigner-algorithm.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aircompressor.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/antlr.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aopalliance.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/apiguardian-api.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/asm.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/avatica-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/avatica-metrics.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-kms.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/aws-java-sdk-s3.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/base.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-anim.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-awt-util.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-bridge.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-codec.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-constants.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-css.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-dom.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-ext.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-gvt.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-i18n.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-parser.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-script.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-shared-resources.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-svg-dom.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-svggen.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-transcoder.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-util.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/batik-xml.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/btm.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/calcite-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/calcite-linq4j.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/cdm-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/checker-qual.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-beanutils.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-codec.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-collections.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-collections4.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-compiler.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-dbcp2.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-io.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-lang.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-lang3.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-logging.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-math.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-math3.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/commons-pool2.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/dom4j.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/ehcache.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/error_prone_annotations.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/failureaccess.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/filters.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/fontbox.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/formats-api.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/formats-bsd.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/formats-gpl.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/glacier2.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/google-http-client-xml.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/google-http-client.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/guava.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hamcrest-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hibernate-commons-annotations.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hibernate-core.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hibernate-jpa-2.0-api.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hibernate-search-analyzers.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/hibernate-search.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpclient.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpclient5.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpcore.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpcore5-h2.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpcore5.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpmime.jar
00:59:01 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/client/httpservices.jar
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00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-core.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-expression.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-jdbc.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-jms.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-ldap-core.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-messaging.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-orm.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-security-core.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-security-ldap.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/spring-tx.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/sqlite-jdbc.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/subethasmtp.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/turbojpeg.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/uzaygezen-core.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xalan.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xercesImpl.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xml-apis-ext.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xml-apis.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xmlgraphics-commons.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xmpcore.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/lib/server/xpp3.jar
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/README
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/agpl.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/antlr.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/apache-v1.1.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/apache-v2.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/asm.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/bouncy_castle_license.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/bsd.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/cddl-v1.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/cpl-v10.html
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/crystalclear.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/django.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/dom4j.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/epl-v1.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/fbsd.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/freemarker.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gpl-v2.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gpl.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/gtest.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/iconsweets_license.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jamon.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jmock.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jquery.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/jtidy.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-3.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v2.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v2.1.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl-v3.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/lgpl.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/matplotlib.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/mit.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/mpl-v1_0.htm
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/npl-1_1.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/path.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/pil.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/postgresql.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/psf-v2.0.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/psf-v2.5.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/scons.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/slf4j.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/tablelayout.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/which.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/zlib-libpng.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/share/licenses/zpl-v2.1.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/README.txt
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/Makefile
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/current.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/misc/enums.py
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__1/OMERO3__7.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__3/OMERO3__5.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__4/OMERO3__5.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__4/OMERO3__1.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__5/OMERO3__4.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__6/OMERO3__5.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO3__7/OMERO3__6.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO4__0/OMERO3A__11.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-footer.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/psql-header.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/schema.sql
00:59:03 inflating: OMERO.server-5.6.3-576-122592012b-ice36-b2/sql/psql/OMERO5.4__0/views.sql
00:59:03 + rm -f OMERO.server-5.6.3-576-122592012b-ice36-b2.zip
00:59:03 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-576-122592012b-ice36-b2 /home/omero/workspace/OMERO-training/OMERO.server
00:59:03 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:59:03 ++ deactivate nondestructive
00:59:03 ++ '[' -n '' ']'
00:59:03 ++ '[' -n '' ']'
00:59:03 ++ hash -r
00:59:03 ++ '[' -n '' ']'
00:59:03 ++ unset VIRTUAL_ENV
00:59:03 ++ unset VIRTUAL_ENV_PROMPT
00:59:03 ++ '[' '!' nondestructive = nondestructive ']'
00:59:03 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:59:03 ++ export VIRTUAL_ENV
00:59:03 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:03 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:03 ++ export PATH
00:59:03 ++ '[' -n '' ']'
00:59:03 ++ '[' -z '' ']'
00:59:03 ++ _OLD_VIRTUAL_PS1=
00:59:03 ++ PS1='(.venv3) '
00:59:03 ++ export PS1
00:59:03 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:59:03 ++ export VIRTUAL_ENV_PROMPT
00:59:03 ++ hash -r
00:59:03 + for x in *.gz
00:59:03 + pip install omero_dropbox-5.7.1.dev0.tar.gz
00:59:03 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:59:03 Installing build dependencies: started
00:59:04 Installing build dependencies: finished with status 'done'
00:59:04 Getting requirements to build wheel: started
00:59:04 Getting requirements to build wheel: finished with status 'done'
00:59:04 Preparing metadata (pyproject.toml): started
00:59:04 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:05 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
00:59:05 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:59:05 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:59:05 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:05 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:59:05 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
00:59:05 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:05 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:59:05 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:59:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:59:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:59:05 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:05 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:59:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:59:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:59:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
00:59:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
00:59:05 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:59:05 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:59:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:59:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:59:05 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:59:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:59:05 Building wheels for collected packages: omero-dropbox
00:59:05 Building wheel for omero-dropbox (pyproject.toml): started
00:59:05 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:59:05 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=e2b829298ae071dc476c03445463c5fae7db294329dae6a4c5419feab8c8cea5
00:59:05 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
00:59:05 Successfully built omero-dropbox
00:59:05 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
00:59:08
00:59:08 Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
00:59:08 + for x in *.gz
00:59:08 + pip install omero_marshal-0.9.2.dev0.tar.gz
00:59:08 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:59:08 Installing build dependencies: started
00:59:09 Installing build dependencies: finished with status 'done'
00:59:09 Getting requirements to build wheel: started
00:59:09 Getting requirements to build wheel: finished with status 'done'
00:59:09 Preparing metadata (pyproject.toml): started
00:59:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:10 Building wheels for collected packages: omero_marshal
00:59:10 Building wheel for omero_marshal (pyproject.toml): started
00:59:10 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:59:10 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=8daddc0216d18046c422affd4954e855000a7bd6bad503d2fcec99867d56c003
00:59:10 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
00:59:10 Successfully built omero_marshal
00:59:10 Installing collected packages: omero_marshal
00:59:12 Successfully installed omero_marshal-0.9.2.dev0
00:59:12 + for x in *.gz
00:59:12 + pip install omero_py-5.22.0.dev0.tar.gz
00:59:12 Processing ./omero_py-5.22.0.dev0.tar.gz
00:59:13 Installing build dependencies: started
00:59:14 Installing build dependencies: finished with status 'done'
00:59:14 Getting requirements to build wheel: started
00:59:15 Getting requirements to build wheel: finished with status 'done'
00:59:15 Preparing metadata (pyproject.toml): started
00:59:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:59:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:59:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
00:59:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
00:59:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:59:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:59:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:59:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:59:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:59:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:59:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
00:59:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
00:59:15 Building wheels for collected packages: omero-py
00:59:15 Building wheel for omero-py (pyproject.toml): started
00:59:16 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:59:16 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=5a789d7062524beadd37a910e4b483255a3d248dbe4520d93dc8bd11f762b752
00:59:16 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
00:59:16 Successfully built omero-py
00:59:16 Installing collected packages: omero-py
00:59:16 Attempting uninstall: omero-py
00:59:16 Found existing installation: omero-py 5.21.3
00:59:16 Uninstalling omero-py-5.21.3:
00:59:17 Successfully uninstalled omero-py-5.21.3
00:59:18 Successfully installed omero-py-5.22.0.dev0
00:59:18 + for x in *.gz
00:59:18 + pip install omero_scripts-5.9.2.dev0.tar.gz
00:59:19 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:59:19 Installing build dependencies: started
00:59:19 Installing build dependencies: finished with status 'done'
00:59:19 Getting requirements to build wheel: started
00:59:20 Getting requirements to build wheel: finished with status 'done'
00:59:20 Preparing metadata (pyproject.toml): started
00:59:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:20 Building wheels for collected packages: omero-scripts
00:59:20 Building wheel for omero-scripts (pyproject.toml): started
00:59:20 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:59:20 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=4c1e0bc1fb9ac652bb07b1643a9039a33af989a99f79be7f661fba044f4ae5ae
00:59:20 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
00:59:20 Successfully built omero-scripts
00:59:20 Installing collected packages: omero-scripts
00:59:20 Successfully installed omero-scripts-5.9.2.dev0
00:59:20 + for x in *.gz
00:59:20 + pip install omero_web-5.30.1.dev0.tar.gz
00:59:21 Processing ./omero_web-5.30.1.dev0.tar.gz
00:59:21 Installing build dependencies: started
00:59:22 Installing build dependencies: finished with status 'done'
00:59:22 Getting requirements to build wheel: started
00:59:22 Getting requirements to build wheel: finished with status 'done'
00:59:22 Preparing metadata (pyproject.toml): started
00:59:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:23 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
00:59:23 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
00:59:23 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:59:23 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
00:59:23 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
00:59:23 Collecting django-pipeline (from omero-web==5.30.1.dev0)
00:59:23 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:59:23 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
00:59:23 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:59:23 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
00:59:23 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:59:23 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
00:59:23 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:59:23 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
00:59:23 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
00:59:23 Collecting pytz (from omero-web==5.30.1.dev0)
00:59:23 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:59:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
00:59:23 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
00:59:23 Collecting importlib-resources (from omero-web==5.30.1.dev0)
00:59:23 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:59:23 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:59:23 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:59:23 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:59:23 Using cached sqlparse-0.5.4-py3-none-any.whl.metadata (4.7 kB)
00:59:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
00:59:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
00:59:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
00:59:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
00:59:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
00:59:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
00:59:23 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
00:59:23 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
00:59:23 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:59:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
00:59:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
00:59:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
00:59:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
00:59:23 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:59:23 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
00:59:23 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:59:23 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:59:23 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:59:23 Using cached sqlparse-0.5.4-py3-none-any.whl (45 kB)
00:59:23 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:59:23 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:59:23 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:59:23 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:59:23 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:59:23 Building wheels for collected packages: omero-web
00:59:23 Building wheel for omero-web (pyproject.toml): started
00:59:24 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:59:24 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819190 sha256=eef15fe84771f18e24bc7500126cc3a7988e69a3d5cb3101912337c02a1d640d
00:59:24 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
00:59:24 Successfully built omero-web
00:59:24 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:59:27
00:59:27 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.4 wheel-0.45.1 whitenoise-6.11.0
00:59:27 + cd /home/omero/workspace/OMERO-training/OMERO.server
00:59:27 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
00:59:27 + HOSTNAME=bad8002a5571
00:59:27 + PORT=4064
00:59:27 + WEBHOST=http://nginx/web
00:59:27 + SERVER_NAME=omero
00:59:27 + ROOT_PASSWORD=omero
00:59:27 + GROUP_NAME=training_group
00:59:27 + GROUP_NAME_2=training_group-2
00:59:27 + USER_NAME=training_user
00:59:27 + USER_NAME_2=training_user-2
00:59:27 + LIGHTADMIN_USER_NAME=ladmin_user
00:59:27 + USER_PASSWORD=ome
00:59:27 + CONFIG_FILENAME=training_ice.config
00:59:27 + omero login root@bad8002a5571:4064 -w omero
00:59:28 Created session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:28 + omero group add training_group --type read-only --ignore-existing
00:59:29 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:29 Added group training_group (id=3) with permissions rwr---
00:59:29 + omero group add training_group-2 --type read-only --ignore-existing
00:59:30 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:30 Added group training_group-2 (id=4) with permissions rwr---
00:59:30 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
00:59:31 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:31 Added user training_user (id=2) with password
00:59:31 + omero user joingroup --name training_user --group-name training_group training_group-2
00:59:32 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:32 2 is already in group 3
00:59:32 2 is already in group 4
00:59:32 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
00:59:33 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:33 Added user training_user-2 (id=3) with password
00:59:33 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
00:59:34 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:34 3 is already in group 3
00:59:34 3 is already in group 4
00:59:34 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
00:59:35 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:35 Added user ladmin_user (id=4) with password
00:59:35 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
00:59:36 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:36 4 is already in group 3
00:59:36 4 is already in group 4
00:59:36 ++ omero user info ladmin_user --style plain
00:59:36 ++ cut -d, -f1
00:59:37 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:37 + id=4
00:59:37 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
00:59:38 Using session for root@bad8002a5571:4064. Idle timeout: 10 min. Current group: system
00:59:38 Experimenter:4
00:59:38 + omero logout
00:59:39 + touch test.fake
00:59:39 + omero login training_user@bad8002a5571:4064 -w ome -g training_group
00:59:40 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:40 + nProjects=1
00:59:40 + nDatasets=2
00:59:40 + echo 'Creating projects and datasets'
00:59:40 Creating projects and datasets
00:59:40 + (( i=1 ))
00:59:40 + (( i<=1 ))
00:59:40 ++ omero obj new Project 'name=Project 1'
00:59:41 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:41 + project=Project:1
00:59:41 + (( j=1 ))
00:59:41 + (( j<=2 ))
00:59:41 ++ omero obj new Dataset 'name=Dataset 1-1'
00:59:42 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:42 + dataset=Dataset:1
00:59:42 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:1
00:59:43 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:43 ProjectDatasetLink:1
00:59:43 + echo 'Importing image into dataset'
00:59:43 Importing image into dataset
00:59:43 + omero import -d Dataset:1 test.fake --debug ERROR
00:59:43 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:44 Dec 18, 2025 12:59:44 AM java.util.prefs.FileSystemPreferences$1 run
00:59:44 INFO: Created user preferences directory.
00:59:44 2025-12-18 00:59:44,572 325 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:44 2025-12-18 00:59:44,586 339 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
00:59:47 Image:1
00:59:47 Other imported objects:
00:59:47 Fileset:1
00:59:47
00:59:47 ==> Summary
00:59:47 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.032
00:59:48 + (( j++ ))
00:59:48 + (( j<=2 ))
00:59:48 ++ omero obj new Dataset 'name=Dataset 1-2'
00:59:48 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:48 + dataset=Dataset:2
00:59:48 + omero obj new ProjectDatasetLink parent=Project:1 child=Dataset:2
00:59:49 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:49 ProjectDatasetLink:2
00:59:49 + echo 'Importing image into dataset'
00:59:49 Importing image into dataset
00:59:49 + omero import -d Dataset:2 test.fake --debug ERROR
00:59:50 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:51 2025-12-18 00:59:51,272 265 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:51 2025-12-18 00:59:51,288 281 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
00:59:53 Image:2
00:59:53 Other imported objects:
00:59:53 Fileset:2
00:59:53
00:59:53 ==> Summary
00:59:53 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.351
00:59:54 + (( j++ ))
00:59:54 + (( j<=2 ))
00:59:54 + (( i++ ))
00:59:54 + (( i<=1 ))
00:59:54 + (( j=1 ))
00:59:54 + (( j<=2 ))
00:59:54 + omero obj new Dataset 'name=Orphaned dataset 1'
00:59:54 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:54 Dataset:3
00:59:54 + (( j++ ))
00:59:54 + (( j<=2 ))
00:59:54 + omero obj new Dataset 'name=Orphaned dataset 2'
00:59:55 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
00:59:55 Dataset:4
00:59:55 + (( j++ ))
00:59:55 + (( j<=2 ))
00:59:55 + echo 'Importing image file'
00:59:55 Importing image file
00:59:55 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:55 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:00 ++ sed -n -e 's/^Image://p' image_import.log
01:00:00 + imageid=3
01:00:00 ++ omero obj new MapAnnotation
01:00:01 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:01 + MAP=MapAnnotation:1
01:00:01 + omero obj map-set MapAnnotation:1 mapValue testkey testvalue
01:00:02 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:02 MapAnnotation:1
01:00:02 + omero obj new ImageAnnotationLink parent=Image:3 child=MapAnnotation:1
01:00:03 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:03 ImageAnnotationLink:1
01:00:03 ++ omero obj new Screen name=Screen
01:00:04 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:04 + screen=Screen:1
01:00:04 ++ omero obj new Plate name=Plate
01:00:05 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:05 + plate=Plate:1
01:00:05 + omero obj new ScreenPlateLink parent=Screen:1 child=Plate:1
01:00:06 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:06 ScreenPlateLink:1
01:00:06 + echo 'Importing SPW file'
01:00:06 Importing SPW file
01:00:06 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:06 + omero import -r Screen:1 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:11 ++ sed -n -e 's/^Plate://p' plate_import.log
01:00:11 + plateid=2
01:00:11 + omero logout
01:00:12 + omero login training_user-2@bad8002a5571:4064 -w ome -g training_group
01:00:13 Created session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:13 + omero obj new Project 'name=Project 0'
01:00:14 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:14 Project:2
01:00:14 + omero obj new Dataset 'name=Dataset 0'
01:00:15 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:15 Dataset:5
01:00:15 + omero import test.fake --debug ERROR
01:00:16 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:16 2025-12-18 01:00:16,901 275 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
01:00:16 2025-12-18 01:00:16,917 291 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
01:00:18 Image:7
01:00:18 Other imported objects:
01:00:18 Fileset:5
01:00:18
01:00:18 ==> Summary
01:00:18 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.709
01:00:18 + omero obj new Screen name=Screen
01:00:19 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:19 Screen:2
01:00:19 + omero obj new Plate name=Plate
01:00:20 Using session for training_user-2@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group
01:00:20 Plate:3
01:00:20 + omero login training_user@bad8002a5571:4064 -w ome -g training_group-2
01:00:21 Created session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:22 + omero obj new Project 'name=Project 0'
01:00:22 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:22 Project:3
01:00:22 + omero obj new Dataset 'name=Dataset 0'
01:00:23 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:23 Dataset:6
01:00:23 + omero import test.fake --debug ERROR
01:00:24 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:25 2025-12-18 01:00:25,367 278 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
01:00:25 2025-12-18 01:00:25,384 295 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 3063196dac37312941de0e4c026e343d4e6ff39e date: 18 December 2025
01:00:27 Image:8
01:00:27 Other imported objects:
01:00:27 Fileset:6
01:00:27
01:00:27 ==> Summary
01:00:27 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.698
01:00:27 + omero obj new Screen name=Screen
01:00:28 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:28 Screen:3
01:00:28 + omero obj new Plate name=Plate
01:00:29 Using session for training_user@bad8002a5571:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:29 Plate:4
01:00:29 + omero logout
01:00:30 + echo omero.host=bad8002a5571
01:00:30 + echo omero.port=4064
01:00:30 + echo omero.webhost=http://nginx/web
01:00:30 + echo omero.servername=omero
01:00:30 + echo omero.user=training_user
01:00:30 + echo omero.pass=ome
01:00:30 + echo omero.group=training_group
01:00:30 + echo omero.projectid=1
01:00:30 + echo omero.datasetid=2
01:00:30 + echo omero.imageid=3
01:00:30 + echo omero.plateid=2
01:00:30 + echo omero.screenid=1
01:00:30 + echo omero.group2=training_group-2
01:00:30 + echo omero.ladmin=ladmin_user
01:00:30 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:30 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:00:30 + omero sessions clear
01:00:31 1 session(s) cleared
01:00:31 !! 12/18/25 01:00:31.273 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:31 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:31 + pip install --upgrade requests
01:00:31 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
01:00:31 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
01:00:31 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
01:00:31 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
01:00:31 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.11.12)
01:00:31 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:00:41 Running training suite
01:00:41 created 20 shapes
01:00:41 retrieved 20 shapes in 4 batches
01:00:41 Current user:
01:00:41 ID: 2
01:00:41 Username: training_user
01:00:41 Full Name: training_user training_user
01:00:41 Is Admin: False
01:00:41 []
01:00:41 Member of:
01:00:41 ID: 3 Name: training_group
01:00:41 ID: 4 Name: training_group-2
01:00:41 Current group: training_group
01:00:41 Group owners:
01:00:41 Group members:
01:00:41 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:41 ID: 2 UserName: training_user Name: training_user training_user
01:00:41 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:00:41 Owner of:
01:00:41 Admins:
01:00:41 ID: 0 UserName: root Name: root root
01:00:41 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:41 Created new Image:9 Name:"numpy image"
01:00:41 newPlane for z,t: 0 0 uint8 0 127
01:00:41 newPlane for z,t: 0 1 uint8 0 127
01:00:41 newPlane for z,t: 0 2 uint8 0 127
01:00:41 newPlane for z,t: 0 3 uint8 0 127
01:00:41 newPlane for z,t: 0 4 uint8 0 127
01:00:41 newPlane for z,t: 0 5 uint8 0 127
01:00:41 newPlane for z,t: 0 6 uint8 0 127
01:00:41 newPlane for z,t: 0 7 uint8 0 127
01:00:41 newPlane for z,t: 0 8 uint8 0 127
01:00:41 newPlane for z,t: 0 9 uint8 0 127
01:00:41 newPlane for z,t: 1 0 uint8 0 127
01:00:41 newPlane for z,t: 1 1 uint8 0 127
01:00:41 newPlane for z,t: 1 2 uint8 0 127
01:00:41 newPlane for z,t: 1 3 uint8 0 127
01:00:41 newPlane for z,t: 1 4 uint8 0 127
01:00:41 newPlane for z,t: 1 5 uint8 0 127
01:00:41 newPlane for z,t: 1 6 uint8 0 127
01:00:41 newPlane for z,t: 1 7 uint8 0 127
01:00:41 newPlane for z,t: 1 8 uint8 0 127
01:00:41 newPlane for z,t: 1 9 uint8 0 127
01:00:41 newPlane for z,t: 2 0 uint8 0 127
01:00:41 newPlane for z,t: 2 1 uint8 0 127
01:00:41 newPlane for z,t: 2 2 uint8 0 127
01:00:41 newPlane for z,t: 2 3 uint8 0 127
01:00:41 newPlane for z,t: 2 4 uint8 0 127
01:00:41 newPlane for z,t: 2 5 uint8 0 127
01:00:41 newPlane for z,t: 2 6 uint8 0 127
01:00:41 newPlane for z,t: 2 7 uint8 0 127
01:00:41 newPlane for z,t: 2 8 uint8 0 127
01:00:41 newPlane for z,t: 2 9 uint8 0 127
01:00:41 newPlane for z,t: 3 0 uint8 0 127
01:00:41 newPlane for z,t: 3 1 uint8 0 127
01:00:41 newPlane for z,t: 3 2 uint8 0 127
01:00:41 newPlane for z,t: 3 3 uint8 0 127
01:00:41 newPlane for z,t: 3 4 uint8 0 127
01:00:41 newPlane for z,t: 3 5 uint8 0 127
01:00:41 newPlane for z,t: 3 6 uint8 0 127
01:00:41 newPlane for z,t: 3 7 uint8 0 127
01:00:41 newPlane for z,t: 3 8 uint8 0 127
01:00:41 newPlane for z,t: 3 9 uint8 0 127
01:00:41 newPlane for z,t: 4 0 uint8 0 127
01:00:41 newPlane for z,t: 4 1 uint8 0 127
01:00:41 newPlane for z,t: 4 2 uint8 0 127
01:00:41 newPlane for z,t: 4 3 uint8 0 127
01:00:41 newPlane for z,t: 4 4 uint8 0 127
01:00:41 newPlane for z,t: 4 5 uint8 0 127
01:00:41 newPlane for z,t: 4 6 uint8 0 127
01:00:41 newPlane for z,t: 4 7 uint8 0 127
01:00:41 newPlane for z,t: 4 8 uint8 0 127
01:00:41 newPlane for z,t: 4 9 uint8 0 127
01:00:41 Deleting, please wait.
01:00:41 Error? False
01:00:41 3 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:41 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2025-12/18/00-59-58.696/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:41 1
01:00:41 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2025-12/18/00-59-58.696/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:41 Current group: training_group
01:00:41 Permissions: READ-ONLY (rwr---)
01:00:41 Project 1 Owner: training_user training_user
01:00:41 Project 0 Owner: training_user-2 training_user-2
01:00:41 Image: <_ImageWrapper id=3>
01:00:41 Image: <_ImageWrapper id=3> Group: training_group 3
01:00:41 Image: <_ImageWrapper id=3> Channel: 0
01:00:41 Channel: 1
01:00:41 Channel: 2
01:00:41
01:00:41
01:00:41 original_metadata
01:00:41 global_metadata
01:00:41 series_metadata
01:00:41
01:00:41 Plane at zct: 0 0 0
01:00:41 [[ 0 0 0 ... 253 254 255]
01:00:41 [ 0 0 0 ... 253 254 255]
01:00:41 [ 0 0 0 ... 253 254 255]
01:00:41 ...
01:00:41 [ 0 1 2 ... 253 254 255]
01:00:41 [ 0 1 2 ... 253 254 255]
01:00:41 [ 0 1 2 ... 253 254 255]]
01:00:41 shape: (512, 512)
01:00:41 min: 0 max: 255 pixel type: uint8
01:00:41
01:00:41 Z stack of tiles:
01:00:41 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:41 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:41 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:41 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:41 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:41
01:00:41 Hyper stack of planes:
01:00:41 plane zct: (2, 0, 0) min: 0 max: 255
01:00:41 plane zct: (2, 0, 1) min: 0 max: 255
01:00:41 plane zct: (2, 0, 2) min: 0 max: 255
01:00:41 plane zct: (2, 0, 3) min: 0 max: 255
01:00:41 plane zct: (2, 0, 4) min: 0 max: 255
01:00:41 plane zct: (2, 0, 5) min: 0 max: 255
01:00:41 plane zct: (2, 0, 6) min: 0 max: 255
01:00:41 plane zct: (2, 0, 7) min: 0 max: 255
01:00:41 plane zct: (2, 0, 8) min: 0 max: 255
01:00:41 plane zct: (2, 0, 9) min: 0 max: 255
01:00:41 plane zct: (2, 1, 0) min: 0 max: 255
01:00:41 plane zct: (2, 1, 1) min: 0 max: 255
01:00:41 plane zct: (2, 1, 2) min: 0 max: 255
01:00:41 plane zct: (2, 1, 3) min: 0 max: 255
01:00:41 plane zct: (2, 1, 4) min: 0 max: 255
01:00:41 plane zct: (2, 1, 5) min: 0 max: 255
01:00:41 plane zct: (2, 1, 6) min: 0 max: 255
01:00:41 plane zct: (2, 1, 7) min: 0 max: 255
01:00:41 plane zct: (2, 1, 8) min: 0 max: 255
01:00:41 plane zct: (2, 1, 9) min: 0 max: 255
01:00:41 plane zct: (2, 2, 0) min: 0 max: 255
01:00:41 plane zct: (2, 2, 1) min: 0 max: 255
01:00:41 plane zct: (2, 2, 2) min: 0 max: 255
01:00:41 plane zct: (2, 2, 3) min: 0 max: 255
01:00:41 plane zct: (2, 2, 4) min: 0 max: 255
01:00:41 plane zct: (2, 2, 5) min: 0 max: 255
01:00:41 plane zct: (2, 2, 6) min: 0 max: 255
01:00:41 plane zct: (2, 2, 7) min: 0 max: 255
01:00:41 plane zct: (2, 2, 8) min: 0 max: 255
01:00:41 plane zct: (2, 2, 9) min: 0 max: 255
01:00:41 plane zct: (3, 0, 0) min: 0 max: 255
01:00:41 plane zct: (3, 0, 1) min: 0 max: 255
01:00:41 plane zct: (3, 0, 2) min: 0 max: 255
01:00:41 plane zct: (3, 0, 3) min: 0 max: 255
01:00:41 plane zct: (3, 0, 4) min: 0 max: 255
01:00:41 plane zct: (3, 0, 5) min: 0 max: 255
01:00:41 plane zct: (3, 0, 6) min: 0 max: 255
01:00:41 plane zct: (3, 0, 7) min: 0 max: 255
01:00:41 plane zct: (3, 0, 8) min: 0 max: 255
01:00:41 plane zct: (3, 0, 9) min: 0 max: 255
01:00:41 plane zct: (3, 1, 0) min: 0 max: 255
01:00:41 plane zct: (3, 1, 1) min: 0 max: 255
01:00:41 plane zct: (3, 1, 2) min: 0 max: 255
01:00:41 plane zct: (3, 1, 3) min: 0 max: 255
01:00:41 plane zct: (3, 1, 4) min: 0 max: 255
01:00:41 plane zct: (3, 1, 5) min: 0 max: 255
01:00:41 plane zct: (3, 1, 6) min: 0 max: 255
01:00:41 plane zct: (3, 1, 7) min: 0 max: 255
01:00:41 plane zct: (3, 1, 8) min: 0 max: 255
01:00:41 plane zct: (3, 1, 9) min: 0 max: 255
01:00:41 plane zct: (3, 2, 0) min: 0 max: 255
01:00:41 plane zct: (3, 2, 1) min: 0 max: 255
01:00:41 plane zct: (3, 2, 2) min: 0 max: 255
01:00:41 plane zct: (3, 2, 3) min: 0 max: 255
01:00:41 plane zct: (3, 2, 4) min: 0 max: 255
01:00:41 plane zct: (3, 2, 5) min: 0 max: 255
01:00:41 plane zct: (3, 2, 6) min: 0 max: 255
01:00:41 plane zct: (3, 2, 7) min: 0 max: 255
01:00:41 plane zct: (3, 2, 8) min: 0 max: 255
01:00:41 plane zct: (3, 2, 9) min: 0 max: 255
01:00:41 plane zct: (4, 0, 0) min: 0 max: 255
01:00:41 plane zct: (4, 0, 1) min: 0 max: 255
01:00:41 plane zct: (4, 0, 2) min: 0 max: 255
01:00:41 plane zct: (4, 0, 3) min: 0 max: 255
01:00:41 plane zct: (4, 0, 4) min: 0 max: 255
01:00:41 plane zct: (4, 0, 5) min: 0 max: 255
01:00:41 plane zct: (4, 0, 6) min: 0 max: 255
01:00:41 plane zct: (4, 0, 7) min: 0 max: 255
01:00:41 plane zct: (4, 0, 8) min: 0 max: 255
01:00:41 plane zct: (4, 0, 9) min: 0 max: 255
01:00:41 plane zct: (4, 1, 0) min: 0 max: 255
01:00:41 plane zct: (4, 1, 1) min: 0 max: 255
01:00:41 plane zct: (4, 1, 2) min: 0 max: 255
01:00:41 plane zct: (4, 1, 3) min: 0 max: 255
01:00:41 plane zct: (4, 1, 4) min: 0 max: 255
01:00:41 plane zct: (4, 1, 5) min: 0 max: 255
01:00:41 plane zct: (4, 1, 6) min: 0 max: 255
01:00:41 plane zct: (4, 1, 7) min: 0 max: 255
01:00:41 plane zct: (4, 1, 8) min: 0 max: 255
01:00:41 plane zct: (4, 1, 9) min: 0 max: 255
01:00:41 plane zct: (4, 2, 0) min: 0 max: 255
01:00:41 plane zct: (4, 2, 1) min: 0 max: 255
01:00:41 plane zct: (4, 2, 2) min: 0 max: 255
01:00:41 plane zct: (4, 2, 3) min: 0 max: 255
01:00:41 plane zct: (4, 2, 4) min: 0 max: 255
01:00:41 plane zct: (4, 2, 5) min: 0 max: 255
01:00:41 plane zct: (4, 2, 6) min: 0 max: 255
01:00:41 plane zct: (4, 2, 7) min: 0 max: 255
01:00:41 plane zct: (4, 2, 8) min: 0 max: 255
01:00:41 plane zct: (4, 2, 9) min: 0 max: 255
01:00:41 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:00:48
01:00:48 List Projects:
01:00:48 ==================================================
01:00:48 Project:1 Name:"Project 1" (owner=training_user)
01:00:48 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:00:48 Image:1 Name:"test.fake" (owner=training_user)
01:00:48 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:00:48 Image:2 Name:"test.fake" (owner=training_user)
01:00:48
01:00:48 List orphaned Datasets:
01:00:48 ==================================================
01:00:48 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:00:48 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:00:48 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:00:48
01:00:48 Images in Dataset: 2
01:00:48 ==================================================
01:00:48 Image:2 Name:"test.fake" (owner=training_user)
01:00:48
01:00:48 Image:3
01:00:48 ==================================================
01:00:48 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:48 X: 512
01:00:48 Y: 512
01:00:48 Z: 5
01:00:48 C: 3
01:00:48 T: 10
01:00:48 Channel: 0 Color: (255, 0, 0)
01:00:48 Lookup table: None
01:00:48 Is reverse intensity? False
01:00:48 Channel: 1 Color: (0, 255, 0)
01:00:48 Lookup table: None
01:00:48 Is reverse intensity? False
01:00:48 Channel: 2 Color: (0, 0, 255)
01:00:48 Lookup table: None
01:00:48 Is reverse intensity? False
01:00:48 Pixel Size X: None
01:00:48
01:00:48 List Screens:
01:00:48 ==================================================
01:00:48 Screen:1 Name:"Screen" (owner=training_user)
01:00:48 Plate:1 Name:"Plate" (owner=training_user)
01:00:48 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:00:48 Screen:2 Name:"Screen" (owner=training_user-2)
01:00:48
01:00:48 Plate:2
01:00:48 ==================================================
01:00:48
01:00:48 Number of fields: (0, 0)
01:00:48
01:00:48 Grid size: {'rows': 1, 'columns': 3}
01:00:48
01:00:48 Wells in Plate: Plate Name 0
01:00:48 Well: 0 0 Fields: 1
01:00:48 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 4
01:00:48 Well: 0 1 Fields: 1
01:00:48 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 5
01:00:48 Well: 0 2 Fields: 1
01:00:48 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 6
01:00:48 1 <class 'omero.model.MapAnnotationI'>
01:00:48 added by training_user
01:00:48 Image ID: 3
01:00:48 Annotation ID: 1
01:00:48 3
01:00:48 Channel rendering settings:
01:00:48 Name: 0
01:00:48 Color: FF0000
01:00:48 Active: True
01:00:48 Levels: 0.0 - 255.0
01:00:48 Name: 1
01:00:48 Color: 00FF00
01:00:48 Active: True
01:00:48 Levels: 0.0 - 255.0
01:00:48 Name: 2
01:00:48 Color: 0000FF
01:00:48 Active: True
01:00:48 Levels: 0.0 - 255.0
01:00:48 isGreyscaleRenderingModel: False
01:00:48 Default Z/T positions:
01:00:48 Z = 2, T = 0
01:00:48 Rendering Defs on Image:
01:00:48 ID: 3 (owner: training_user training_user)
01:00:48 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:00:48 ROI: ID: 2
01:00:48 Shape: id 21 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:00:48 Shape: id 22 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:00:48 ROI: ID: 3
01:00:48 Shape: id 23 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:00:48 ROI: ID: 4
01:00:48 Shape: id 24 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:00:48 ROI: ID: 5
01:00:48 Shape: id 25 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:00:48 ROI: ID: 6
01:00:48 <class 'omero.model.PolygonI'> Not supported by this code
01:00:48 Shape: id 26 theT 0 theZ 2 textValue test-Polygon
01:00:48 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:00:48 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:00:48 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:00:48 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:00:48 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:00:48 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:00:48 Removing Shape from ROI...
01:00:48 Deleting ROI: 7
01:00:48 Table Columns:
01:00:48 Uid
01:00:48 MyStringColumnInit
01:00:48 Row count: 10
01:00:48
01:00:48 Get All Data for rows: [3, 5, 7]
01:00:48 Data for Column: Uid
01:00:48 1
01:00:48 2
01:00:48 3
01:00:48 4
01:00:48 5
01:00:48 6
01:00:48 7
01:00:48 8
01:00:48 9
01:00:48 10
01:00:48 Data for Column: MyStringColumnInit
01:00:48 one
01:00:48 two
01:00:48 three
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 eight
01:00:48 nine
01:00:48 ten
01:00:48
01:00:48 Get All Data for rows with slice: [3, 5, 7]
01:00:48 Data for Column: Uid
01:00:48 4
01:00:48 6
01:00:48 8
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 six
01:00:48 eight
01:00:48
01:00:48 Get Data for cols: [1] and between rows: 3 - 7
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48
01:00:48 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 Query Results for Column: Uid
01:00:48 3
01:00:48 4
01:00:48 5
01:00:48 6
01:00:48 7
01:00:48 8
01:00:48 Query Results for Column: MyStringColumnInit
01:00:48 three
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 eight
01:00:48 Opened table with row-count: 10
01:00:48 New dataset, Id: 7
01:00:48 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:00:48 5 <class 'omero.model.TagAnnotationI'> added by training_user
01:00:48 Tag value: New Tag
01:00:48 6 <class 'omero.model.MapAnnotationI'> added by training_user
01:00:48
01:00:48 Creating an OriginalFile and FileAnnotation
01:00:48 Attaching FileAnnotation to Dataset: File ID: 7 , README.txt Size: 15
01:00:48
01:00:48 Annotations on Dataset: New Dataset
01:00:48 File ID: 211 README.txt Size: 15
01:00:48
01:00:48 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:00:48 File downloaded!
01:00:48 7 README.txt
01:00:48 Found Annotation with namespace: imperial.training.demo
01:00:48 Plane: 0 0 0
01:00:48 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:00:48 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:00:48
01:00:48 List Datasets:
01:00:48 ID: 8 Name: MyDataset
01:00:48 ID: 9 Name: MyDataset
01:00:48 ID: 10 Name: MyDataset
01:00:48
01:00:48 List Tags:
01:00:48 ID: 8 Text: MyTag Desc: MyTag 0
01:00:48 ID: 9 Text: MyTag Desc: MyTag 1
01:00:48 ID: 10 Text: MyTag Desc: MyTag 2
01:00:48 New dataset, Id: 11
01:00:48 New dataset 2, Id: 12
01:00:48 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:48 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:48 [[ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 ...
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]]
01:00:48 shape: (100, 100)
01:00:48 min: 0 max: 104 pixel type: uint8
01:00:48 Average : 53.9125
01:00:48 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:48 kymograph_data (512, 100)
01:00:48 Attaching kymograph.png to image
01:00:48 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:48 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:48 [[ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 ...
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]]
01:00:48 shape: (100, 100)
01:00:48 min: 0 max: 104 pixel type: uint8
01:00:48 Average : 53.9125
01:00:48 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:48 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:48 kymograph_data (512, 100)
01:00:48 Attaching kymograph.png to image
01:00:48 No file downloaded. Project not rated.
01:00:48 New image, Id: 12
01:00:48 Starting at: http://nginx/web/api/
01:00:48 CSRF token fEQ4JyQp3kd1F1QofciE0Gyllaisyatf
01:00:48 Servers:
01:00:48 -id: 1
01:00:48 name: omero
01:00:48 host: omero
01:00:48 port: 4064
01:00:48 -id: 2
01:00:48 name: testintegration
01:00:48 host: testintegration
01:00:48 port: 14064
01:00:48 eventContext {'sessionId': 108, 'sessionUuid': '7471153c-5c1a-4827-995f-f127d1975a85', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:00:48 Projects:
01:00:48 2 Project 0
01:00:48 3 Project 0
01:00:48 Created Project: 6 API TEST foo
01:00:48 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/6/datasets/'}}
01:00:48 !! 12/18/25 01:00:48.222 error: communicator not destroyed during global destruction.+ deactivate
01:00:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:00:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:00:48 + export PATH
01:00:48 + unset _OLD_VIRTUAL_PATH
01:00:48 + '[' -n '' ']'
01:00:48 + hash -r
01:00:48 + '[' -n '' ']'
01:00:48 + unset VIRTUAL_ENV
01:00:48 + unset VIRTUAL_ENV_PROMPT
01:00:48 + '[' '!' '' = nondestructive ']'
01:00:48 + unset -f deactivate
01:00:48 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:00:48 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:00:50 Note: Some input files use unchecked or unsafe operations.
01:00:50 Note: Recompile with -Xlint:unchecked for details.
01:00:50 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:00:50 Error: LinkageError occurred while loading main class training.Setup
01:00:50 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
01:00:50 Build step 'Execute shell' marked build as failure
01:00:50 Finished: FAILURE
