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10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:53:46 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/test.xml
10:53:46 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/update_dependencies.sh
10:53:46 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/gitversion.xml
10:53:46 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/cmake/GitVersion.cmake
10:53:46 + rm -f openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:46 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/openmicroscopy
10:53:46 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:53:46 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:53:46 ++ ls OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:46 + ZIP=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:46 + DIST=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8
10:53:46 + unzip -n OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:46 Archive: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/grid/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/janelia/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/matplotlib/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/ncsa_paledit/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/seaborn/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/wcif/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/analysis_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/annotation_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/export_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/figure_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/import_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/util_scripts/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/server/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/licenses/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__1/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__10/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__2/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/
10:53:46 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/tmp/
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/LICENSE.txt
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/backup.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-senders.example
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-server.example
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/build.properties
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.bat
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.sh
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/hibernate.properties
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/ice.config
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-cli.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing-cli.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/mime.types
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node1.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node2.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/omero.properties
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/psql
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/rollover.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/Windows.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/maintainance.html
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/README
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/default.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/templates.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/windefault.xml
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/ice.config
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/internal.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/master.cfg
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/robot.template
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/testdropbox.config
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/history.rst
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/OMEZarrReader.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/accessors-smart.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/activation.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aggdesigner-algorithm.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aircompressor.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/antlr.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aopalliance.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/apiguardian-api.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/asm.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/avatica-core.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/avatica-metrics.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aws-java-sdk-core.jar
10:53:46 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/aws-java-sdk-kms.jar
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10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
10:53:48 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql
10:53:48 + rm -f OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
10:53:48 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/OMERO.server
10:53:48 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
10:53:48 ++ deactivate nondestructive
10:53:48 ++ '[' -n '' ']'
10:53:48 ++ '[' -n '' ']'
10:53:48 ++ hash -r
10:53:48 ++ '[' -n '' ']'
10:53:48 ++ unset VIRTUAL_ENV
10:53:48 ++ unset VIRTUAL_ENV_PROMPT
10:53:48 ++ '[' '!' nondestructive = nondestructive ']'
10:53:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
10:53:48 ++ export VIRTUAL_ENV
10:53:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:53:48 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:53:48 ++ export PATH
10:53:48 ++ '[' -n '' ']'
10:53:48 ++ '[' -z '' ']'
10:53:48 ++ _OLD_VIRTUAL_PS1=
10:53:48 ++ PS1='(.venv3) '
10:53:48 ++ export PS1
10:53:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:53:48 ++ export VIRTUAL_ENV_PROMPT
10:53:48 ++ hash -r
10:53:48 + for x in *.gz
10:53:48 + pip install omero_dropbox-5.7.1.dev0.tar.gz
10:53:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:53:48 Installing build dependencies: started
10:53:49 Installing build dependencies: finished with status 'done'
10:53:49 Getting requirements to build wheel: started
10:53:49 Getting requirements to build wheel: finished with status 'done'
10:53:49 Preparing metadata (pyproject.toml): started
10:53:49 Preparing metadata (pyproject.toml): finished with status 'done'
10:53:50 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
10:53:50 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
10:53:50 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
10:53:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:53:50 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
10:53:50 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:53:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
10:53:50 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
10:53:50 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
10:53:50 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
10:53:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
10:53:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:53:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
10:53:50 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
10:53:50 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:53:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
10:53:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
10:53:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
10:53:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
10:53:50 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
10:53:50 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
10:53:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:53:50 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:53:50 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:53:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:53:50 Building wheels for collected packages: omero-dropbox
10:53:50 Building wheel for omero-dropbox (pyproject.toml): started
10:53:50 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:53:50 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=3949de15149800926d81d246b88b594da40e8683604cca22d12557bfec3f31e4
10:53:50 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
10:53:50 Successfully built omero-dropbox
10:53:50 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
10:53:53
10:53:53 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
10:53:53 + for x in *.gz
10:53:53 + pip install omero_marshal-0.9.2.dev0.tar.gz
10:53:53 Processing ./omero_marshal-0.9.2.dev0.tar.gz
10:53:53 Installing build dependencies: started
10:53:54 Installing build dependencies: finished with status 'done'
10:53:54 Getting requirements to build wheel: started
10:53:54 Getting requirements to build wheel: finished with status 'done'
10:53:54 Preparing metadata (pyproject.toml): started
10:53:55 Preparing metadata (pyproject.toml): finished with status 'done'
10:53:55 Building wheels for collected packages: omero_marshal
10:53:55 Building wheel for omero_marshal (pyproject.toml): started
10:53:55 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:53:55 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=bb53e3f6838c16ad46c1f7a7cbdc5fd878d165e2413763a1f7fedbdd23beae16
10:53:55 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
10:53:55 Successfully built omero_marshal
10:53:55 Installing collected packages: omero_marshal
10:53:55 Successfully installed omero_marshal-0.9.2.dev0
10:53:55 + for x in *.gz
10:53:55 + pip install omero_py-5.22.0.dev0.tar.gz
10:53:55 Processing ./omero_py-5.22.0.dev0.tar.gz
10:53:56 Installing build dependencies: started
10:53:57 Installing build dependencies: finished with status 'done'
10:53:57 Getting requirements to build wheel: started
10:53:57 Getting requirements to build wheel: finished with status 'done'
10:53:57 Preparing metadata (pyproject.toml): started
10:53:57 Preparing metadata (pyproject.toml): finished with status 'done'
10:53:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
10:53:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
10:53:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
10:53:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
10:53:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
10:53:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
10:53:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
10:53:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
10:53:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
10:53:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
10:53:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
10:53:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
10:53:57 Building wheels for collected packages: omero-py
10:53:57 Building wheel for omero-py (pyproject.toml): started
10:53:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:53:58 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=38c58703400c90cbf3cc0210bafeac01bd862ff9d60478e33cd36ea946cd4cee
10:53:58 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
10:53:58 Successfully built omero-py
10:53:58 Installing collected packages: omero-py
10:53:58 Attempting uninstall: omero-py
10:53:58 Found existing installation: omero-py 5.21.3
10:53:58 Uninstalling omero-py-5.21.3:
10:53:59 Successfully uninstalled omero-py-5.21.3
10:54:00 Successfully installed omero-py-5.22.0.dev0
10:54:00 + for x in *.gz
10:54:00 + pip install omero_scripts-5.9.2.dev0.tar.gz
10:54:01 Processing ./omero_scripts-5.9.2.dev0.tar.gz
10:54:01 Installing build dependencies: started
10:54:01 Installing build dependencies: finished with status 'done'
10:54:01 Getting requirements to build wheel: started
10:54:02 Getting requirements to build wheel: finished with status 'done'
10:54:02 Preparing metadata (pyproject.toml): started
10:54:02 Preparing metadata (pyproject.toml): finished with status 'done'
10:54:02 Building wheels for collected packages: omero-scripts
10:54:02 Building wheel for omero-scripts (pyproject.toml): started
10:54:02 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:54:02 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=0e00776f128d2a5bb6e871f0ecd2704765121b2310470d834c31f22479e124ec
10:54:02 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
10:54:02 Successfully built omero-scripts
10:54:02 Installing collected packages: omero-scripts
10:54:02 Successfully installed omero-scripts-5.9.2.dev0
10:54:03 + for x in *.gz
10:54:03 + pip install omero_web-5.30.1.dev0.tar.gz
10:54:03 Processing ./omero_web-5.30.1.dev0.tar.gz
10:54:03 Installing build dependencies: started
10:54:04 Installing build dependencies: finished with status 'done'
10:54:04 Getting requirements to build wheel: started
10:54:04 Getting requirements to build wheel: finished with status 'done'
10:54:04 Preparing metadata (pyproject.toml): started
10:54:04 Preparing metadata (pyproject.toml): finished with status 'done'
10:54:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
10:54:05 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
10:54:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
10:54:05 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
10:54:05 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
10:54:05 Collecting django-pipeline (from omero-web==5.30.1.dev0)
10:54:05 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
10:54:05 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
10:54:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:54:05 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
10:54:05 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
10:54:05 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
10:54:05 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
10:54:05 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
10:54:05 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0)
10:54:05 Collecting pytz (from omero-web==5.30.1.dev0)
10:54:05 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
10:54:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
10:54:05 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
10:54:05 Collecting importlib-resources (from omero-web==5.30.1.dev0)
10:54:05 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
10:54:05 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
10:54:05 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
10:54:05 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
10:54:05 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
10:54:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
10:54:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
10:54:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0)
10:54:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
10:54:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
10:54:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
10:54:05 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
10:54:05 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
10:54:05 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
10:54:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
10:54:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
10:54:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
10:54:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2026.1.4)
10:54:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:54:05 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
10:54:05 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
10:54:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
10:54:05 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
10:54:05 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
10:54:05 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
10:54:05 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
10:54:05 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
10:54:05 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
10:54:05 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
10:54:05 Building wheels for collected packages: omero-web
10:54:05 Building wheel for omero-web (pyproject.toml): started
10:54:06 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:54:06 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=c0b64d8acc34b41b47b359e17b0565ed9487e8fb7e54834669f061f89c43cce6
10:54:06 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
10:54:06 Successfully built omero-web
10:54:06 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
10:54:09
10:54:09 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
10:54:09 + cd /home/omero/workspace/OMERO-training/OMERO.server
10:54:09 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
10:54:09 + HOSTNAME=9aa82dd07910
10:54:09 + PORT=4064
10:54:09 + WEBHOST=http://nginx/web
10:54:09 + SERVER_NAME=omero
10:54:09 + ROOT_PASSWORD=omero
10:54:09 + GROUP_NAME=training_group
10:54:09 + GROUP_NAME_2=training_group-2
10:54:09 + USER_NAME=training_user
10:54:09 + USER_NAME_2=training_user-2
10:54:09 + LIGHTADMIN_USER_NAME=ladmin_user
10:54:09 + USER_PASSWORD=ome
10:54:09 + CONFIG_FILENAME=training_ice.config
10:54:09 + omero login root@9aa82dd07910:4064 -w omero
10:54:10 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:10 + omero group add training_group --type read-only --ignore-existing
10:54:11 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:11 Group exists: training_group (id=3)
10:54:11 + omero group add training_group-2 --type read-only --ignore-existing
10:54:12 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:12 Group exists: training_group-2 (id=4)
10:54:12 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
10:54:13 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:13 User exists: training_user (id=2)
10:54:13 + omero user joingroup --name training_user --group-name training_group training_group-2
10:54:14 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:14 2 is already in group 3
10:54:14 2 is already in group 4
10:54:14 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
10:54:14 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:14 User exists: training_user-2 (id=3)
10:54:15 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
10:54:15 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:15 3 is already in group 3
10:54:15 3 is already in group 4
10:54:15 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
10:54:16 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:16 User exists: ladmin_user (id=4)
10:54:16 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
10:54:17 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:17 4 is already in group 3
10:54:17 4 is already in group 4
10:54:17 ++ omero user info ladmin_user --style plain
10:54:17 ++ cut -d, -f1
10:54:18 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:18 + id=4
10:54:18 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
10:54:19 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
10:54:19 Experimenter:4
10:54:19 + omero logout
10:54:20 + touch test.fake
10:54:20 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group
10:54:21 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:21 + nProjects=1
10:54:21 + nDatasets=2
10:54:21 + echo 'Creating projects and datasets'
10:54:21 Creating projects and datasets
10:54:21 + (( i=1 ))
10:54:21 + (( i<=1 ))
10:54:21 ++ omero obj new Project 'name=Project 1'
10:54:22 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:22 + project=Project:307
10:54:22 + (( j=1 ))
10:54:22 + (( j<=2 ))
10:54:22 ++ omero obj new Dataset 'name=Dataset 1-1'
10:54:23 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:23 + dataset=Dataset:313
10:54:23 + omero obj new ProjectDatasetLink parent=Project:307 child=Dataset:313
10:54:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:24 ProjectDatasetLink:304
10:54:24 + echo 'Importing image into dataset'
10:54:24 Importing image into dataset
10:54:24 + omero import -d Dataset:313 test.fake --debug ERROR
10:54:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:25 2026-01-05 10:54:25,468 254 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
10:54:25 2026-01-05 10:54:25,483 269 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
10:54:32 Image:813
10:54:32 Other imported objects:
10:54:32 Fileset:307
10:54:32
10:54:32 ==> Summary
10:54:32 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.967
10:54:32 + (( j++ ))
10:54:32 + (( j<=2 ))
10:54:32 ++ omero obj new Dataset 'name=Dataset 1-2'
10:54:33 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:33 + dataset=Dataset:314
10:54:33 + omero obj new ProjectDatasetLink parent=Project:307 child=Dataset:314
10:54:34 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:34 ProjectDatasetLink:305
10:54:34 + echo 'Importing image into dataset'
10:54:34 Importing image into dataset
10:54:34 + omero import -d Dataset:314 test.fake --debug ERROR
10:54:35 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:35 2026-01-05 10:54:35,741 237 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
10:54:35 2026-01-05 10:54:35,756 252 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
10:54:36 2026-01-05 10:54:36,836 1332 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
10:54:37 Image:814
10:54:37 Other imported objects:
10:54:37 Fileset:308
10:54:37
10:54:37 ==> Summary
10:54:37 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.919
10:54:37 + (( j++ ))
10:54:37 + (( j<=2 ))
10:54:37 + (( i++ ))
10:54:37 + (( i<=1 ))
10:54:37 + (( j=1 ))
10:54:37 + (( j<=2 ))
10:54:37 + omero obj new Dataset 'name=Orphaned dataset 1'
10:54:38 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:38 Dataset:315
10:54:38 + (( j++ ))
10:54:38 + (( j<=2 ))
10:54:38 + omero obj new Dataset 'name=Orphaned dataset 2'
10:54:39 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:39 Dataset:316
10:54:39 + (( j++ ))
10:54:39 + (( j<=2 ))
10:54:39 + echo 'Importing image file'
10:54:39 Importing image file
10:54:39 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:54:39 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:54:43 ++ sed -n -e 's/^Image://p' image_import.log
10:54:43 + imageid=815
10:54:43 ++ omero obj new MapAnnotation
10:54:44 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:44 + MAP=MapAnnotation:314
10:54:44 + omero obj map-set MapAnnotation:314 mapValue testkey testvalue
10:54:45 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:45 MapAnnotation:314
10:54:45 + omero obj new ImageAnnotationLink parent=Image:815 child=MapAnnotation:314
10:54:46 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:46 ImageAnnotationLink:304
10:54:46 ++ omero obj new Screen name=Screen
10:54:47 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:47 + screen=Screen:304
10:54:47 ++ omero obj new Plate name=Plate
10:54:48 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:48 + plate=Plate:305
10:54:48 + omero obj new ScreenPlateLink parent=Screen:304 child=Plate:305
10:54:49 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:54:49 ScreenPlateLink:303
10:54:49 + echo 'Importing SPW file'
10:54:49 Importing SPW file
10:54:49 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
10:54:49 + omero import -r Screen:304 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
10:54:58 ++ sed -n -e 's/^Plate://p' plate_import.log
10:54:58 + plateid=306
10:54:58 + omero logout
10:54:59 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group
10:55:00 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:00 + omero obj new Project 'name=Project 0'
10:55:00 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:00 Project:308
10:55:01 + omero obj new Dataset 'name=Dataset 0'
10:55:01 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:01 Dataset:317
10:55:01 + omero import test.fake --debug ERROR
10:55:02 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:03 2026-01-05 10:55:03,264 248 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
10:55:03 2026-01-05 10:55:03,279 263 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
10:55:04 2026-01-05 10:55:04,384 1368 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
10:55:05 Image:819
10:55:05 Other imported objects:
10:55:05 Fileset:311
10:55:05
10:55:05 ==> Summary
10:55:05 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.622
10:55:05 + omero obj new Screen name=Screen
10:55:05 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:05 Screen:305
10:55:06 + omero obj new Plate name=Plate
10:55:06 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
10:55:06 Plate:307
10:55:06 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2
10:55:07 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:07 + omero obj new Project 'name=Project 0'
10:55:08 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:08 Project:309
10:55:08 + omero obj new Dataset 'name=Dataset 0'
10:55:09 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:09 Dataset:318
10:55:09 + omero import test.fake --debug ERROR
10:55:10 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:11 2026-01-05 10:55:11,017 241 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
10:55:11 2026-01-05 10:55:11,032 256 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
10:55:12 2026-01-05 10:55:12,101 1325 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
10:55:12 Image:820
10:55:12 Other imported objects:
10:55:12 Fileset:312
10:55:12
10:55:12 ==> Summary
10:55:12 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.604
10:55:12 + omero obj new Screen name=Screen
10:55:13 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:13 Screen:306
10:55:13 + omero obj new Plate name=Plate
10:55:14 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
10:55:14 Plate:308
10:55:14 + omero logout
10:55:15 + echo omero.host=9aa82dd07910
10:55:15 + echo omero.port=4064
10:55:15 + echo omero.webhost=http://nginx/web
10:55:15 + echo omero.servername=omero
10:55:15 + echo omero.user=training_user
10:55:15 + echo omero.pass=ome
10:55:15 + echo omero.group=training_group
10:55:15 + echo omero.projectid=307
10:55:15 + echo omero.datasetid=314
10:55:15 + echo omero.imageid=815
10:55:15 + echo omero.plateid=306
10:55:15 + echo omero.screenid=304
10:55:15 + echo omero.group2=training_group-2
10:55:15 + echo omero.ladmin=ladmin_user
10:55:15 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:55:15 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
10:55:15 + omero sessions clear
10:55:16 1 session(s) cleared
10:55:16 !! 01/05/26 10:55:16.459 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
10:55:16 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
10:55:16 + pip install --upgrade requests
10:55:16 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
10:55:16 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
10:55:16 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
10:55:16 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
10:55:16 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.1.4)
10:55:16 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
10:55:23 Running training suite
10:55:23 created 20 shapes
10:55:23 retrieved 20 shapes in 4 batches
10:55:23 Current user:
10:55:23 ID: 2
10:55:23 Username: training_user
10:55:23 Full Name: training_user training_user
10:55:23 Is Admin: False
10:55:23 []
10:55:23 Member of:
10:55:23 ID: 3 Name: training_group
10:55:23 ID: 4 Name: training_group-2
10:55:23 Current group: training_group
10:55:23 Group owners:
10:55:23 Group members:
10:55:23 ID: 2 UserName: training_user Name: training_user training_user
10:55:23 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
10:55:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
10:55:23 Owner of:
10:55:23 Admins:
10:55:23 ID: 0 UserName: root Name: root root
10:55:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
10:55:23 Created new Image:821 Name:"numpy image"
10:55:23 newPlane for z,t: 0 0 uint8 0 127
10:55:23 newPlane for z,t: 0 1 uint8 0 127
10:55:23 newPlane for z,t: 0 2 uint8 0 127
10:55:23 newPlane for z,t: 0 3 uint8 0 127
10:55:23 newPlane for z,t: 0 4 uint8 0 127
10:55:23 newPlane for z,t: 0 5 uint8 0 127
10:55:23 newPlane for z,t: 0 6 uint8 0 127
10:55:23 newPlane for z,t: 0 7 uint8 0 127
10:55:23 newPlane for z,t: 0 8 uint8 0 127
10:55:23 newPlane for z,t: 0 9 uint8 0 127
10:55:23 newPlane for z,t: 1 0 uint8 0 127
10:55:23 newPlane for z,t: 1 1 uint8 0 127
10:55:23 newPlane for z,t: 1 2 uint8 0 127
10:55:23 newPlane for z,t: 1 3 uint8 0 127
10:55:23 newPlane for z,t: 1 4 uint8 0 127
10:55:23 newPlane for z,t: 1 5 uint8 0 127
10:55:23 newPlane for z,t: 1 6 uint8 0 127
10:55:23 newPlane for z,t: 1 7 uint8 0 127
10:55:23 newPlane for z,t: 1 8 uint8 0 127
10:55:23 newPlane for z,t: 1 9 uint8 0 127
10:55:23 newPlane for z,t: 2 0 uint8 0 127
10:55:23 newPlane for z,t: 2 1 uint8 0 127
10:55:23 newPlane for z,t: 2 2 uint8 0 127
10:55:23 newPlane for z,t: 2 3 uint8 0 127
10:55:23 newPlane for z,t: 2 4 uint8 0 127
10:55:23 newPlane for z,t: 2 5 uint8 0 127
10:55:23 newPlane for z,t: 2 6 uint8 0 127
10:55:23 newPlane for z,t: 2 7 uint8 0 127
10:55:23 newPlane for z,t: 2 8 uint8 0 127
10:55:23 newPlane for z,t: 2 9 uint8 0 127
10:55:23 newPlane for z,t: 3 0 uint8 0 127
10:55:23 newPlane for z,t: 3 1 uint8 0 127
10:55:23 newPlane for z,t: 3 2 uint8 0 127
10:55:23 newPlane for z,t: 3 3 uint8 0 127
10:55:23 newPlane for z,t: 3 4 uint8 0 127
10:55:23 newPlane for z,t: 3 5 uint8 0 127
10:55:23 newPlane for z,t: 3 6 uint8 0 127
10:55:23 newPlane for z,t: 3 7 uint8 0 127
10:55:23 newPlane for z,t: 3 8 uint8 0 127
10:55:23 newPlane for z,t: 3 9 uint8 0 127
10:55:23 newPlane for z,t: 4 0 uint8 0 127
10:55:23 newPlane for z,t: 4 1 uint8 0 127
10:55:23 newPlane for z,t: 4 2 uint8 0 127
10:55:23 newPlane for z,t: 4 3 uint8 0 127
10:55:23 newPlane for z,t: 4 4 uint8 0 127
10:55:23 newPlane for z,t: 4 5 uint8 0 127
10:55:23 newPlane for z,t: 4 6 uint8 0 127
10:55:23 newPlane for z,t: 4 7 uint8 0 127
10:55:23 newPlane for z,t: 4 8 uint8 0 127
10:55:23 newPlane for z,t: 4 9 uint8 0 127
10:55:23 Deleting, please wait.
10:55:23 Error? False
10:55:23 815 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-448/2026-01/05/10-54-42.114/ test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:23 1
10:55:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-448/2026-01/05/10-54-42.114/ test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:23 Current group: training_group
10:55:23 Permissions: READ-ONLY (rwr---)
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Project 0 Owner: training_user-2 training_user-2
10:55:23 Project 1 Owner: training_user training_user
10:55:23 Image: <_ImageWrapper id=815>
10:55:23 Image: <_ImageWrapper id=815> Group: training_group 3
10:55:23 Image: <_ImageWrapper id=815> Channel: 0
10:55:23 Channel: 1
10:55:23 Channel: 2
10:55:23
10:55:23
10:55:23 original_metadata
10:55:23 global_metadata
10:55:23 series_metadata
10:55:23
10:55:23 Plane at zct: 0 0 0
10:55:23 [[ 0 0 0 ... 253 254 255]
10:55:23 [ 0 0 0 ... 253 254 255]
10:55:23 [ 0 0 0 ... 253 254 255]
10:55:23 ...
10:55:23 [ 0 1 2 ... 253 254 255]
10:55:23 [ 0 1 2 ... 253 254 255]
10:55:23 [ 0 1 2 ... 253 254 255]]
10:55:23 shape: (512, 512)
10:55:23 min: 0 max: 255 pixel type: uint8
10:55:23
10:55:23 Z stack of tiles:
10:55:23 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:55:23 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:55:23 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:55:23 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:55:23 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:55:23
10:55:23 Hyper stack of planes:
10:55:23 plane zct: (2, 0, 0) min: 0 max: 255
10:55:23 plane zct: (2, 0, 1) min: 0 max: 255
10:55:23 plane zct: (2, 0, 2) min: 0 max: 255
10:55:23 plane zct: (2, 0, 3) min: 0 max: 255
10:55:23 plane zct: (2, 0, 4) min: 0 max: 255
10:55:23 plane zct: (2, 0, 5) min: 0 max: 255
10:55:23 plane zct: (2, 0, 6) min: 0 max: 255
10:55:23 plane zct: (2, 0, 7) min: 0 max: 255
10:55:23 plane zct: (2, 0, 8) min: 0 max: 255
10:55:23 plane zct: (2, 0, 9) min: 0 max: 255
10:55:23 plane zct: (2, 1, 0) min: 0 max: 255
10:55:23 plane zct: (2, 1, 1) min: 0 max: 255
10:55:23 plane zct: (2, 1, 2) min: 0 max: 255
10:55:23 plane zct: (2, 1, 3) min: 0 max: 255
10:55:23 plane zct: (2, 1, 4) min: 0 max: 255
10:55:23 plane zct: (2, 1, 5) min: 0 max: 255
10:55:23 plane zct: (2, 1, 6) min: 0 max: 255
10:55:23 plane zct: (2, 1, 7) min: 0 max: 255
10:55:23 plane zct: (2, 1, 8) min: 0 max: 255
10:55:23 plane zct: (2, 1, 9) min: 0 max: 255
10:55:23 plane zct: (2, 2, 0) min: 0 max: 255
10:55:23 plane zct: (2, 2, 1) min: 0 max: 255
10:55:23 plane zct: (2, 2, 2) min: 0 max: 255
10:55:23 plane zct: (2, 2, 3) min: 0 max: 255
10:55:23 plane zct: (2, 2, 4) min: 0 max: 255
10:55:23 plane zct: (2, 2, 5) min: 0 max: 255
10:55:23 plane zct: (2, 2, 6) min: 0 max: 255
10:55:23 plane zct: (2, 2, 7) min: 0 max: 255
10:55:23 plane zct: (2, 2, 8) min: 0 max: 255
10:55:23 plane zct: (2, 2, 9) min: 0 max: 255
10:55:23 plane zct: (3, 0, 0) min: 0 max: 255
10:55:23 plane zct: (3, 0, 1) min: 0 max: 255
10:55:23 plane zct: (3, 0, 2) min: 0 max: 255
10:55:23 plane zct: (3, 0, 3) min: 0 max: 255
10:55:23 plane zct: (3, 0, 4) min: 0 max: 255
10:55:23 plane zct: (3, 0, 5) min: 0 max: 255
10:55:23 plane zct: (3, 0, 6) min: 0 max: 255
10:55:23 plane zct: (3, 0, 7) min: 0 max: 255
10:55:23 plane zct: (3, 0, 8) min: 0 max: 255
10:55:23 plane zct: (3, 0, 9) min: 0 max: 255
10:55:23 plane zct: (3, 1, 0) min: 0 max: 255
10:55:23 plane zct: (3, 1, 1) min: 0 max: 255
10:55:23 plane zct: (3, 1, 2) min: 0 max: 255
10:55:23 plane zct: (3, 1, 3) min: 0 max: 255
10:55:23 plane zct: (3, 1, 4) min: 0 max: 255
10:55:23 plane zct: (3, 1, 5) min: 0 max: 255
10:55:23 plane zct: (3, 1, 6) min: 0 max: 255
10:55:23 plane zct: (3, 1, 7) min: 0 max: 255
10:55:23 plane zct: (3, 1, 8) min: 0 max: 255
10:55:23 plane zct: (3, 1, 9) min: 0 max: 255
10:55:23 plane zct: (3, 2, 0) min: 0 max: 255
10:55:23 plane zct: (3, 2, 1) min: 0 max: 255
10:55:23 plane zct: (3, 2, 2) min: 0 max: 255
10:55:23 plane zct: (3, 2, 3) min: 0 max: 255
10:55:23 plane zct: (3, 2, 4) min: 0 max: 255
10:55:23 plane zct: (3, 2, 5) min: 0 max: 255
10:55:23 plane zct: (3, 2, 6) min: 0 max: 255
10:55:23 plane zct: (3, 2, 7) min: 0 max: 255
10:55:23 plane zct: (3, 2, 8) min: 0 max: 255
10:55:23 plane zct: (3, 2, 9) min: 0 max: 255
10:55:23 plane zct: (4, 0, 0) min: 0 max: 255
10:55:23 plane zct: (4, 0, 1) min: 0 max: 255
10:55:23 plane zct: (4, 0, 2) min: 0 max: 255
10:55:23 plane zct: (4, 0, 3) min: 0 max: 255
10:55:23 plane zct: (4, 0, 4) min: 0 max: 255
10:55:23 plane zct: (4, 0, 5) min: 0 max: 255
10:55:23 plane zct: (4, 0, 6) min: 0 max: 255
10:55:23 plane zct: (4, 0, 7) min: 0 max: 255
10:55:23 plane zct: (4, 0, 8) min: 0 max: 255
10:55:23 plane zct: (4, 0, 9) min: 0 max: 255
10:55:23 plane zct: (4, 1, 0) min: 0 max: 255
10:55:23 plane zct: (4, 1, 1) min: 0 max: 255
10:55:23 plane zct: (4, 1, 2) min: 0 max: 255
10:55:23 plane zct: (4, 1, 3) min: 0 max: 255
10:55:23 plane zct: (4, 1, 4) min: 0 max: 255
10:55:23 plane zct: (4, 1, 5) min: 0 max: 255
10:55:23 plane zct: (4, 1, 6) min: 0 max: 255
10:55:23 plane zct: (4, 1, 7) min: 0 max: 255
10:55:23 plane zct: (4, 1, 8) min: 0 max: 255
10:55:23 plane zct: (4, 1, 9) min: 0 max: 255
10:55:23 plane zct: (4, 2, 0) min: 0 max: 255
10:55:23 plane zct: (4, 2, 1) min: 0 max: 255
10:55:23 plane zct: (4, 2, 2) min: 0 max: 255
10:55:23 plane zct: (4, 2, 3) min: 0 max: 255
10:55:23 plane zct: (4, 2, 4) min: 0 max: 255
10:55:23 plane zct: (4, 2, 5) min: 0 max: 255
10:55:23 plane zct: (4, 2, 6) min: 0 max: 255
10:55:23 plane zct: (4, 2, 7) min: 0 max: 255
10:55:23 plane zct: (4, 2, 8) min: 0 max: 255
10:55:23 plane zct: (4, 2, 9) min: 0 max: 255
10:55:23 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
10:55:23
10:55:23 List Projects:
10:55:23 ==================================================
10:55:23 Project:1 Name:"Project 1" (owner=training_user)
10:55:23 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
10:55:23 Image:1 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
10:55:23 Image:12 Name:"New Image" (owner=training_user)
10:55:23 Image:2 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:7 Name:"New Dataset" (owner=training_user)
10:55:23 Project:7 Name:"Project 1" (owner=training_user)
10:55:23 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
10:55:23 Image:13 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
10:55:23 Image:24 Name:"New Image" (owner=training_user)
10:55:23 Image:25 Name:"newImageFrom15" (owner=training_user)
10:55:23 Image:14 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:19 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:29 Name:"new Name 1" (owner=training_user)
10:55:23 Dataset:30 Name:"new Name 2" (owner=training_user)
10:55:23 Project:51 Name:"Project 1" (owner=training_user)
10:55:23 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
10:55:23 Image:551 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
10:55:23 Image:562 Name:"New Image" (owner=training_user)
10:55:23 Image:563 Name:"newImageFrom553" (owner=training_user)
10:55:23 Image:552 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:57 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:67 Name:"new Name 1" (owner=training_user)
10:55:23 Dataset:68 Name:"new Name 2" (owner=training_user)
10:55:23 Project:101 Name:"Project 1" (owner=training_user)
10:55:23 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
10:55:23 Image:601 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
10:55:23 Image:612 Name:"New Image" (owner=training_user)
10:55:23 Image:613 Name:"newImageFrom603" (owner=training_user)
10:55:23 Image:602 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:107 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:117 Name:"new Name 1" (owner=training_user)
10:55:23 Dataset:118 Name:"new Name 2" (owner=training_user)
10:55:23 Project:151 Name:"Project 1" (owner=training_user)
10:55:23 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
10:55:23 Image:651 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
10:55:23 Image:662 Name:"New Image" (owner=training_user)
10:55:23 Image:663 Name:"newImageFrom653" (owner=training_user)
10:55:23 Image:652 Name:"test.fake" (owner=training_user)
10:55:23 Dataset:157 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:167 Name:"new Name 1" (owner=training_user)
10:55:23 Dataset:168 Name:"new Name 2" (owner=training_user)
10:55:23
10:55:23 List orphaned Datasets:
10:55:23 ==================================================
10:55:23 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:10 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:9 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:8 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:11 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:12 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
10:55:23 Dataset:22 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:21 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:20 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:23 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:24 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:26 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:27 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:28 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
10:55:23 Dataset:64 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:65 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:66 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:60 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:59 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:58 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:61 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:62 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:110 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:109 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:108 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:111 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:112 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
10:55:23 Dataset:114 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:115 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:116 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:160 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:159 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:158 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:161 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:162 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
10:55:23 Dataset:164 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:165 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:166 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:210 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:209 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:208 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:211 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:212 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:255 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:260 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:259 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:258 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:261 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:262 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:303 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:304 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:305 Name:"Dataset 0" (owner=training_user-2)
10:55:23 Dataset:310 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:309 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:308 Name:"MyDataset" (owner=training_user)
10:55:23 Dataset:311 Name:"New Dataset" (owner=training_user)
10:55:23 Dataset:312 Name:"New Dataset2" (owner=training_user)
10:55:23 Dataset:315 Name:"Orphaned dataset 1" (owner=training_user)
10:55:23 Dataset:316 Name:"Orphaned dataset 2" (owner=training_user)
10:55:23 Dataset:317 Name:"Dataset 0" (owner=training_user-2)
10:55:23
10:55:23 Images in Dataset: 314
10:55:23 ==================================================
10:55:23 Image:814 Name:"test.fake" (owner=training_user)
10:55:23
10:55:23 Image:815
10:55:23 ==================================================
10:55:23 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:23 X: 512
10:55:23 Y: 512
10:55:23 Z: 5
10:55:23 C: 3
10:55:23 T: 10
10:55:23 Channel: 0 Color: (255, 0, 0)
10:55:23 Lookup table: None
10:55:23 Is reverse intensity? False
10:55:23 Channel: 1 Color: (0, 255, 0)
10:55:23 Lookup table: None
10:55:23 Is reverse intensity? False
10:55:23 Channel: 2 Color: (0, 0, 255)
10:55:23 Lookup table: None
10:55:23 Is reverse intensity? False
10:55:23 Pixel Size X: None
10:55:23
10:55:23 List Screens:
10:55:23 ==================================================
10:55:23 Screen:1 Name:"Screen" (owner=training_user)
10:55:23 Plate:1 Name:"Plate" (owner=training_user)
10:55:23 Plate:2 Name:"Plate Name 0" (owner=training_user)
10:55:23 Screen:4 Name:"Screen" (owner=training_user)
10:55:23 Plate:5 Name:"Plate" (owner=training_user)
10:55:23 Plate:6 Name:"Plate Name 0" (owner=training_user)
10:55:23 Screen:51 Name:"Screen" (owner=training_user)
10:55:23 Plate:51 Name:"Plate" (owner=training_user)
10:55:26 Plate:52 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:101 Name:"Screen" (owner=training_user)
10:55:26 Plate:101 Name:"Plate" (owner=training_user)
10:55:26 Plate:102 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:151 Name:"Screen" (owner=training_user)
10:55:26 Plate:151 Name:"Plate" (owner=training_user)
10:55:26 Plate:152 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:201 Name:"Screen" (owner=training_user)
10:55:26 Plate:201 Name:"Plate" (owner=training_user)
10:55:26 Plate:202 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:251 Name:"Screen" (owner=training_user)
10:55:26 Plate:251 Name:"Plate" (owner=training_user)
10:55:26 Plate:252 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:301 Name:"Screen" (owner=training_user)
10:55:26 Plate:301 Name:"Plate" (owner=training_user)
10:55:26 Plate:302 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:304 Name:"Screen" (owner=training_user)
10:55:26 Plate:305 Name:"Plate" (owner=training_user)
10:55:26 Plate:306 Name:"Plate Name 0" (owner=training_user)
10:55:26 Screen:2 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:5 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:52 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:102 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:152 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:202 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:252 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:302 Name:"Screen" (owner=training_user-2)
10:55:26 Screen:305 Name:"Screen" (owner=training_user-2)
10:55:26
10:55:26 Plate:306
10:55:26 ==================================================
10:55:26
10:55:26 Number of fields: (0, 0)
10:55:26
10:55:26 Grid size: {'rows': 1, 'columns': 3}
10:55:26
10:55:26 Wells in Plate: Plate Name 0
10:55:26 Well: 0 0 Fields: 1
10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 816
10:55:26 Well: 0 1 Fields: 1
10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 818
10:55:26 Well: 0 2 Fields: 1
10:55:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 817
10:55:26 314 <class 'omero.model.MapAnnotationI'>
10:55:26 added by training_user
10:55:26 Image ID: 815
10:55:26 Annotation ID: 314
10:55:26 815
10:55:26 Channel rendering settings:
10:55:26 Name: 0
10:55:26 Color: FF0000
10:55:26 Active: True
10:55:26 Levels: 0.0 - 255.0
10:55:26 Name: 1
10:55:26 Color: 00FF00
10:55:26 Active: True
10:55:26 Levels: 0.0 - 255.0
10:55:26 Name: 2
10:55:26 Color: 0000FF
10:55:26 Active: True
10:55:26 Levels: 0.0 - 255.0
10:55:26 isGreyscaleRenderingModel: False
10:55:26 Default Z/T positions:
10:55:26 Z = 2, T = 0
10:55:26 Rendering Defs on Image:
10:55:26 ID: 412 (owner: training_user training_user)
10:55:26 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
10:55:26 ROI: ID: 309
10:55:26 Shape: id 398 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
10:55:26 Shape: id 399 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
10:55:26 ROI: ID: 310
10:55:26 Shape: id 400 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
10:55:26 ROI: ID: 311
10:55:26 Shape: id 401 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
10:55:26 ROI: ID: 312
10:55:26 Shape: id 402 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
10:55:26 ROI: ID: 313
10:55:26 <class 'omero.model.PolygonI'> Not supported by this code
10:55:26 Shape: id 403 theT 0 theZ 2 textValue test-Polygon
10:55:26 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
10:55:26 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
10:55:26 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
10:55:26 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
10:55:26 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
10:55:26 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
10:55:26 Removing Shape from ROI...
10:55:26 Deleting ROI: 314
10:55:26 Table Columns:
10:55:26 Uid
10:55:26 MyStringColumnInit
10:55:26 Row count: 10
10:55:26
10:55:26 Get All Data for rows: [3, 5, 7]
10:55:26 Data for Column: Uid
10:55:26 1
10:55:26 2
10:55:26 3
10:55:26 4
10:55:26 5
10:55:26 6
10:55:26 7
10:55:26 8
10:55:26 9
10:55:26 10
10:55:26 Data for Column: MyStringColumnInit
10:55:26 one
10:55:26 two
10:55:26 three
10:55:26 four
10:55:26 five
10:55:26 six
10:55:26 seven
10:55:26 eight
10:55:26 nine
10:55:26 ten
10:55:26
10:55:26 Get All Data for rows with slice: [3, 5, 7]
10:55:26 Data for Column: Uid
10:55:26 4
10:55:26 6
10:55:26 8
10:55:26 Data for Column: MyStringColumnInit
10:55:26 four
10:55:26 six
10:55:26 eight
10:55:26
10:55:26 Get Data for cols: [1] and between rows: 3 - 7
10:55:26 Data for Column: MyStringColumnInit
10:55:26 four
10:55:26 five
10:55:26 six
10:55:26 seven
10:55:26
10:55:26 Get Data for cols: [1] and between rows: 3 - 7 with slice
10:55:26 Data for Column: MyStringColumnInit
10:55:26 four
10:55:26 five
10:55:26 six
10:55:26 seven
10:55:26 Query Results for Column: Uid
10:55:26 3
10:55:26 4
10:55:26 5
10:55:26 6
10:55:26 7
10:55:26 8
10:55:26 Query Results for Column: MyStringColumnInit
10:55:26 three
10:55:26 four
10:55:26 five
10:55:26 six
10:55:26 seven
10:55:26 eight
10:55:26 Opened table with row-count: 10
10:55:26 New dataset, Id: 319
10:55:26 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
10:55:26 318 <class 'omero.model.TagAnnotationI'> added by training_user
10:55:26 Tag value: New Tag
10:55:26 319 <class 'omero.model.MapAnnotationI'> added by training_user
10:55:26
10:55:26 Creating an OriginalFile and FileAnnotation
10:55:26 Attaching FileAnnotation to Dataset: File ID: 320 , README.txt Size: 15
10:55:26
10:55:26 Annotations on Dataset: New Dataset
10:55:26 File ID: 939 README.txt Size: 15
10:55:26
10:55:26 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
10:55:26 File downloaded!
10:55:26 207 README.txt
10:55:26 320 README.txt
10:55:26 157 README.txt
10:55:26 107 README.txt
10:55:26 257 README.txt
10:55:26 7 README.txt
10:55:26 307 README.txt
10:55:26 57 README.txt
10:55:26 20 README.txt
10:55:26 Found Annotation with namespace: imperial.training.demo
10:55:26 Plane: 0 0 0
10:55:26 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
10:55:26 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
10:55:26
10:55:26 List Datasets:
10:55:26 ID: 322 Name: MyDataset
10:55:26 ID: 321 Name: MyDataset
10:55:26 ID: 320 Name: MyDataset
10:55:26 ID: 310 Name: MyDataset
10:55:26 ID: 309 Name: MyDataset
10:55:26 ID: 308 Name: MyDataset
10:55:26 ID: 260 Name: MyDataset
10:55:26 ID: 259 Name: MyDataset
10:55:26 ID: 258 Name: MyDataset
10:55:26 ID: 210 Name: MyDataset
10:55:26 ID: 209 Name: MyDataset
10:55:26 ID: 208 Name: MyDataset
10:55:26 ID: 166 Name: MyDataset
10:55:26 ID: 165 Name: MyDataset
10:55:26 ID: 164 Name: MyDataset
10:55:26 ID: 160 Name: MyDataset
10:55:26 ID: 159 Name: MyDataset
10:55:26 ID: 158 Name: MyDataset
10:55:26 ID: 116 Name: MyDataset
10:55:26 ID: 115 Name: MyDataset
10:55:26 ID: 114 Name: MyDataset
10:55:26 ID: 110 Name: MyDataset
10:55:26 ID: 109 Name: MyDataset
10:55:26 ID: 108 Name: MyDataset
10:55:26 ID: 66 Name: MyDataset
10:55:26 ID: 65 Name: MyDataset
10:55:26 ID: 64 Name: MyDataset
10:55:26 ID: 60 Name: MyDataset
10:55:26 ID: 59 Name: MyDataset
10:55:26 ID: 58 Name: MyDataset
10:55:26 ID: 28 Name: MyDataset
10:55:26 ID: 27 Name: MyDataset
10:55:26 ID: 26 Name: MyDataset
10:55:26 ID: 22 Name: MyDataset
10:55:26 ID: 21 Name: MyDataset
10:55:26 ID: 20 Name: MyDataset
10:55:26 ID: 10 Name: MyDataset
10:55:26 ID: 9 Name: MyDataset
10:55:26 ID: 8 Name: MyDataset
10:55:26
10:55:26 List Tags:
10:55:26 ID: 8 Text: MyTag Desc: MyTag 0
10:55:26 ID: 9 Text: MyTag Desc: MyTag 1
10:55:26 ID: 10 Text: MyTag Desc: MyTag 2
10:55:26 ID: 21 Text: MyTag Desc: MyTag 0
10:55:26 ID: 22 Text: MyTag Desc: MyTag 1
10:55:26 ID: 23 Text: MyTag Desc: MyTag 2
10:55:26 ID: 29 Text: MyTag Desc: MyTag 0
10:55:26 ID: 30 Text: MyTag Desc: MyTag 1
10:55:26 ID: 31 Text: MyTag Desc: MyTag 2
10:55:26 ID: 58 Text: MyTag Desc: MyTag 0
10:55:26 ID: 59 Text: MyTag Desc: MyTag 1
10:55:26 ID: 60 Text: MyTag Desc: MyTag 2
10:55:26 ID: 66 Text: MyTag Desc: MyTag 0
10:55:26 ID: 67 Text: MyTag Desc: MyTag 1
10:55:26 ID: 68 Text: MyTag Desc: MyTag 2
10:55:26 ID: 108 Text: MyTag Desc: MyTag 0
10:55:26 ID: 109 Text: MyTag Desc: MyTag 1
10:55:26 ID: 110 Text: MyTag Desc: MyTag 2
10:55:26 ID: 116 Text: MyTag Desc: MyTag 0
10:55:26 ID: 117 Text: MyTag Desc: MyTag 1
10:55:26 ID: 118 Text: MyTag Desc: MyTag 2
10:55:26 ID: 158 Text: MyTag Desc: MyTag 0
10:55:26 ID: 159 Text: MyTag Desc: MyTag 1
10:55:26 ID: 160 Text: MyTag Desc: MyTag 2
10:55:26 ID: 166 Text: MyTag Desc: MyTag 0
10:55:26 ID: 167 Text: MyTag Desc: MyTag 1
10:55:26 ID: 168 Text: MyTag Desc: MyTag 2
10:55:26 ID: 208 Text: MyTag Desc: MyTag 0
10:55:26 ID: 209 Text: MyTag Desc: MyTag 1
10:55:26 ID: 210 Text: MyTag Desc: MyTag 2
10:55:26 ID: 258 Text: MyTag Desc: MyTag 0
10:55:26 ID: 259 Text: MyTag Desc: MyTag 1
10:55:26 ID: 260 Text: MyTag Desc: MyTag 2
10:55:26 ID: 308 Text: MyTag Desc: MyTag 0
10:55:26 ID: 309 Text: MyTag Desc: MyTag 1
10:55:26 ID: 310 Text: MyTag Desc: MyTag 2
10:55:26 ID: 321 Text: MyTag Desc: MyTag 0
10:55:26 ID: 322 Text: MyTag Desc: MyTag 1
10:55:26 ID: 323 Text: MyTag Desc: MyTag 2
10:55:26 New dataset, Id: 323
10:55:26 New dataset 2, Id: 324
10:55:26 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:26 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
10:55:26 [[ 0 0 0 ... 102 103 104]
10:55:26 [ 0 0 0 ... 102 103 104]
10:55:26 [ 0 0 0 ... 102 103 104]
10:55:26 ...
10:55:26 [ 5 6 7 ... 102 103 104]
10:55:26 [ 5 6 7 ... 102 103 104]
10:55:26 [ 5 6 7 ... 102 103 104]]
10:55:27 shape: (100, 100)
10:55:27 min: 0 max: 104 pixel type: uint8
10:55:27 Average : 53.9125
10:55:27 Getting data for T, tile: 0 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 1 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 2 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 3 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 4 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 5 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 6 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 7 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 8 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 9 (256, 0, 10, 512)
10:55:27 kymograph_data (512, 100)
10:55:27 Attaching kymograph.png to image
10:55:27 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:55:27 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
10:55:27 [[ 0 0 0 ... 102 103 104]
10:55:27 [ 0 0 0 ... 102 103 104]
10:55:27 [ 0 0 0 ... 102 103 104]
10:55:27 ...
10:55:27 [ 5 6 7 ... 102 103 104]
10:55:27 [ 5 6 7 ... 102 103 104]
10:55:27 [ 5 6 7 ... 102 103 104]]
10:55:27 shape: (100, 100)
10:55:27 min: 0 max: 104 pixel type: uint8
10:55:27 Average : 53.9125
10:55:27 Getting data for T, tile: 0 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 1 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 2 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 3 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 4 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 5 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 6 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 7 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 8 (256, 0, 10, 512)
10:55:27 Getting data for T, tile: 9 (256, 0, 10, 512)
10:55:27 kymograph_data (512, 100)
10:55:27 Attaching kymograph.png to image
10:55:27 No file downloaded. Project not rated.
10:55:27 New image, Id: 824
10:55:27 Starting at: http://nginx/web/api/
10:55:27 CSRF token LTiLSVifRzqhdsw2t07no11X0XtSZuRK
10:55:27 Servers:
10:55:27 -id: 1
10:55:27 name: omero
10:55:27 host: omero
10:55:27 port: 4064
10:55:27 -id: 2
10:55:27 name: testintegration
10:55:27 host: testintegration
10:55:27 port: 14064
10:55:27 eventContext {'sessionId': 851, 'sessionUuid': '0cdb62ac-9c87-4c48-a419-8d84c177d42e', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
10:55:27 Projects:
10:55:27 2 Project 0
10:55:27 3 Project 0
10:55:27 Created Project: 312 API TEST foo
10:55:27 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 312, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/312/datasets/'}}
10:55:27 !! 01/05/26 10:55:27.429 error: communicator not destroyed during global destruction.+ deactivate
10:55:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:55:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:55:27 + export PATH
10:55:27 + unset _OLD_VIRTUAL_PATH
10:55:27 + '[' -n '' ']'
10:55:27 + hash -r
10:55:27 + '[' -n '' ']'
10:55:27 + unset VIRTUAL_ENV
10:55:27 + unset VIRTUAL_ENV_PROMPT
10:55:27 + '[' '!' '' = nondestructive ']'
10:55:27 + unset -f deactivate
10:55:27 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
10:55:27 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
10:55:28 Note: Some input files use unchecked or unsafe operations.
10:55:28 Note: Recompile with -Xlint:unchecked for details.
10:55:28 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
10:55:29 Error: LinkageError occurred while loading main class training.Setup
10:55:29 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
10:55:29 Build step 'Execute shell' marked build as failure
10:55:29 Finished: FAILURE
