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Changes

Summary

  1. Take axes metadata into account (details)
  2. Add test checking default axes if not present (details)
  3. Fix order since order in omero is reverse in ome.zarr (details)
  4. Remove printlns (details)
  5. Remove commented out code (details)
  6. Remove unused imports (details)
  7. Support zarr without c, t or z axes (details)
  8. Fix swapped xy tile size (details)
  9. Fix issue when Z missing (details)
  10. Fix issue with checkReadSize (details)
  11. Add integration tests for different dimensions (details)
  12. remove logging from TestZarr (details)
  13. Moved classes into correct package (details)
  14. Fix package declaration (details)
  15. Fix order (details)
  16. install blosc (details)
  17. Check repo owner (details)
  18. Some refactoring (details)
  19. Moved Utils method into TestZarr itself (details)
  20. Add more missing tests (details)
  21. Use DimensionOrder (details)
  22. Clarify order (details)
  23. Remove usage of BF --order argument (details)
  24. Reduce calls to axesOrder.containsKey (details)
  25. Simplify code (details)
  26. Fix formatting (details)
  27. Sanitise getAxisOrder (details)
  28. Fix for loops (details)
  29. Move z axis access into conditional block (details)
  30. Add clarification about the downsampling factor expectation (details)
Commit 63c9936f61779531740cb52691ee172a826df6c5 by d.lindner
Take axes metadata into account
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit 71c93bba2b3b5a21896ccd80dfcc5c81d8d16845 by j.burel
Add test checking default axes if not present
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit dfe6319efbe9a538ffaac83616293c7345e60e68 by j.burel
Fix order since order in omero is reverse in ome.zarr
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit 7fef6bfec89ec33b62d4bd9e9eb27041ed09990e by d.lindner
Remove commented out code
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit b6dc26052e6213ef085a42a55d0ad0320b52f9f6 by d.lindner
Remove unused imports
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit 7d9f3383797e455710885d11076300ca7338701a by d.lindner
Support zarr without c, t or z axes
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit a7cd5c957ef2b31d36b9a5bfdadc361821bf2b49 by d.lindner
Fix swapped xy tile size
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit 0020bb62eb157e64dfc1c64e039773a798a0e1c6 by d.lindner
Fix issue when Z missing
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit e4eb3e9e99126a14d0474486eaa2709ba2adae9f by d.lindner
Fix issue with checkReadSize
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit ed93541c375eb0a30f6c47509182e73d4c5f594a by d.lindner
Add integration tests for different dimensions
The file was addedsrc/test/java/com/glencoesoftware/Utils.java
The file was addedsrc/test/java/com/glencoesoftware/TestZarr.java
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit 8995b113144475b9e74b2801ac42a7b530e1935f by d.lindner
remove logging from TestZarr
The file was modified src/test/java/com/glencoesoftware/TestZarr.java (diff)
Commit 56df523c23975d891f7f9c2e28f00e717d8d1695 by d.lindner
Moved classes into correct package
The file was removedsrc/test/java/com/glencoesoftware/TestZarr.java
The file was addedsrc/test/java/com/glencoesoftware/omero/zarr/Utils.java
The file was removedsrc/test/java/com/glencoesoftware/Utils.java
The file was addedsrc/test/java/com/glencoesoftware/omero/zarr/TestZarr.java
Commit 04fe46e8ffd27d00ee32fb4f1554ace23a42102b by d.lindner
Fix package declaration
The file was modified src/test/java/com/glencoesoftware/omero/zarr/TestZarr.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/Utils.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
The file was modified .github/workflows/build.yml (diff)
The file was modified .github/workflows/build.yml (diff)
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit 4d9ef538f82fdd21ce1ac89ce0725f209dc2920b by d.lindner
Moved Utils method into TestZarr itself
The file was modified src/test/java/com/glencoesoftware/omero/zarr/TestZarr.java (diff)
The file was removedsrc/test/java/com/glencoesoftware/omero/zarr/Utils.java
Commit c950c9ca91d4f3eafa5e06ee949dc1cc7e2683cd by d.lindner
Add more missing tests
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/TestZarr.java (diff)
Commit bd1bac4b5bacdd5978db8bbf86dcf34e6763ffa7 by d.lindner
Remove usage of BF --order argument
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit 96afc5a44a1ccda2649957aa001e3abb8431e377 by d.lindner
Reduce calls to axesOrder.containsKey
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/TestZarr.java (diff)
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit 3868956680dee8ac732e84d3b28ff613fb2f7d04 by d.lindner
Sanitise getAxisOrder
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
The file was modified src/test/java/com/glencoesoftware/omero/zarr/ZarrPixelBufferTest.java (diff)
Commit beeacff28669518d115cd405b31c74b8e669ea9d by d.lindner
Move z axis access into conditional block
The file was modified src/main/java/com/glencoesoftware/omero/zarr/ZarrPixelBuffer.java (diff)
Commit 65000fc0d2e03807ad31b663dce8fdb00c45c4d9 by sbesson
Add clarification about the downsampling factor expectation
The file was modified README.md (diff)