Started by upstream project "Trigger" build number 68 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-zarr-pixel-buffer-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-zarr-pixel-buffer-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision f7116d6f3f523d1e9220524bf9e551f267832167 (refs/remotes/origin/master) Commit message: "Merge pull request #14 from dominikl/remove_merge_ga" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-zarr-pixel-buffer-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-zarr-pixel-buffer.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-zarr-pixel-buffer.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-zarr-pixel-buffer.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f f7116d6f3f523d1e9220524bf9e551f267832167 # timeout=10 > git rev-list --no-walk f7116d6f3f523d1e9220524bf9e551f267832167 # timeout=10 Cleaning workspace [Pipeline] pwd [Pipeline] sh + mkdir -p build + echo build [Pipeline] sh > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 + pushd build ~/workspace/OMERO-zarr-pixel-buffer-push/build ~/workspace/OMERO-zarr-pixel-buffer-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-zarr-pixel-buffer-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.0.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.11.0-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.4-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached pyjwt-2.11.0-py3-none-any.whl (28 kB) Using cached cryptography-46.0.4-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.1.4 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.4 future-1.0.0 idna-3.11 pycparser-3.0 pyjwt-2.11.0 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-zarr-pixel-buffer.git + BASE_REPO=omero-zarr-pixel-buffer.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-02-06 00:31:10,472 [ scc.config] DEBUG Found github.token 2026-02-06 00:31:10,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-06 00:31:10,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:11,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:11,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-06 00:31:11,550 [ scc.gh] DEBUG 4261 remaining from 5000 (Reset at 00:02 2026-02-06 00:31:11,551 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-06 00:31:11,553 [ scc.git] DEBUG Check current status 2026-02-06 00:31:11,553 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-06 00:31:11,555 [ scc.git] DEBUG f7116d6 Merge pull request #14 from dominikl/remove_merge_ga 2026-02-06 00:31:11,556 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-06 00:31:11,594 [ scc.config] DEBUG Found remote.origin.url 2026-02-06 00:31:12,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2026-02-06 00:31:12,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-06 00:31:13,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-06 00:31:13,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-06 00:31:13,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-06 00:31:13,835 [ scc.git] DEBUG Resetting... 2026-02-06 00:31:13,835 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-06 00:31:13,840 [ scc.git] DEBUG HEAD is now at f7116d6 Merge pull request #14 from dominikl/remove_merge_ga 2026-02-06 00:31:13,841 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-06 00:31:13,879 [ scc.git] DEBUG Check current status 2026-02-06 00:31:13,879 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-06 00:31:13,881 [ scc.git] DEBUG f7116d6 Merge pull request #14 from dominikl/remove_merge_ga 2026-02-06 00:31:13,881 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-06 00:31:13,918 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-06 00:31:13,918 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-06 00:31:13,918 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-06 00:31:13,918 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-06 00:31:13,918 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-06 00:31:13,918 [ scc.repo] DEBUG ## PRs found: 2026-02-06 00:31:14,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2026-02-06 00:31:14,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/13 HTTP/1.1" 200 None 2026-02-06 00:31:14,877 [ scc.repo] DEBUG - PR 13 dominikl 'Zarr v3 support' 2026-02-06 00:31:15,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/12 HTTP/1.1" 200 None 2026-02-06 00:31:15,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/10 HTTP/1.1" 200 None 2026-02-06 00:31:15,952 [ scc.repo] DEBUG ## Branches found: 2026-02-06 00:31:15,952 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:15,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:15,955 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-06 00:31:15,957 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-06 00:31:15,957 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-06 00:31:15,959 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-06 00:31:15,962 [ scc.git] DEBUG Already up to date. 2026-02-06 00:31:15,962 [ scc.git] DEBUG Calling 'git fetch origin pull/13/head' 2026-02-06 00:31:16,545 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2026-02-06 00:31:16,545 [ scc.git] DEBUG * branch refs/pull/13/head -> FETCH_HEAD 2026-02-06 00:31:16,547 [ scc.git] DEBUG ## Unique users: [] 2026-02-06 00:31:16,548 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:16,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:16,550 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...03d05fa27fa396db6cc5b15f1ba3616a9ff263f1' 2026-02-06 00:31:16,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:16,555 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 13 (Zarr v3 support) 03d05fa27fa396db6cc5b15f1ba3616a9ff263f1' 2026-02-06 00:31:16,564 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-06 00:31:16,570 [ scc.git] DEBUG build.gradle | 66 +- 2026-02-06 00:31:16,570 [ scc.git] DEBUG config/checkstyle/checkstyle.xml | 9 +- 2026-02-06 00:31:16,570 [ scc.git] DEBUG gradle.properties | 7 + 2026-02-06 00:31:16,570 [ scc.git] DEBUG gradle/wrapper/gradle-wrapper.jar | Bin 61574 -> 43764 bytes 2026-02-06 00:31:16,570 [ scc.git] DEBUG gradle/wrapper/gradle-wrapper.properties | 3 +- 2026-02-06 00:31:16,570 [ scc.git] DEBUG gradlew | 37 +- 2026-02-06 00:31:16,570 [ scc.git] DEBUG gradlew.bat | 26 +- 2026-02-06 00:31:16,570 [ scc.git] DEBUG installpb.sh | 15 + 2026-02-06 00:31:16,571 [ scc.git] DEBUG installpbv3.sh | 50 ++ 2026-02-06 00:31:16,571 [ scc.git] DEBUG .../com/bc/zarr/storage/OmeroFileSystemStore.java | 78 -- 2026-02-06 00:31:16,571 [ scc.git] DEBUG .../omero/zarr/OmeroAmazonS3ClientFactory.java | 138 --- 2026-02-06 00:31:16,571 [ scc.git] DEBUG .../omero/zarr/OmeroS3FileSystem.java | 44 - 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../zarr/OmeroS3ReadOnlySeekableByteChannel.java | 194 ---- 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../java/com/glencoesoftware/omero/zarr/Utils.java | 88 ++ 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../com/glencoesoftware/omero/zarr/ZarrPath.java | 64 ++ 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBuffer.java | 453 ++++------ 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsService.java | 245 ++--- 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../com/glencoesoftware/omero/zarr/ZarrStore.java | 397 +++++++++ 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../s3fs/OmeroS3FilesystemProvider.java | 187 ---- 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBufferTest.java | 989 ++++----------------- 2026-02-06 00:31:16,572 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsServiceTest.java | 10 +- 2026-02-06 00:31:16,572 [ scc.git] DEBUG 21 files changed, 1146 insertions(+), 1954 deletions(-) 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 gradle.properties 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 installpb.sh 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 installpbv3.sh 2026-02-06 00:31:16,572 [ scc.git] DEBUG delete mode 100644 src/main/java/com/bc/zarr/storage/OmeroFileSystemStore.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroAmazonS3ClientFactory.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroS3FileSystem.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG delete mode 100644 src/main/java/com/glencoesoftware/omero/zarr/OmeroS3ReadOnlySeekableByteChannel.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/Utils.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/ZarrPath.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/ZarrStore.java 2026-02-06 00:31:16,572 [ scc.git] DEBUG delete mode 100644 src/main/java/com/upplication/s3fs/OmeroS3FilesystemProvider.java 2026-02-06 00:31:16,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:16,722 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-06 00:31:16,759 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:16,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:16,761 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-06 00:31:16,765 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f23f3f4f3d0> has no local changes 2026-02-06 00:31:16,765 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-zarr-pixel-buffer Excluded PRs: - PR 12 Rdornier 'Adding other required dependencies' (user: Rdornier) - PR 10 Rdornier 'Install jars' (user: Rdornier) Already up to date. Merged PRs: - PR 13 dominikl 'Zarr v3 support' Generated by OMERO-zarr-pixel-buffer-push#42 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/42/)' 2026-02-06 00:31:16,771 [ scc.git] DEBUG [detached HEAD 9da02c8] merge master -Dorg -Snone 2026-02-06 00:31:16,771 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2026-02-06 00:31:16,771 [ scc.merge] INFO Excluded PRs: 2026-02-06 00:31:16,771 [ scc.merge] INFO - PR 12 Rdornier 'Adding other required dependencies' (user: Rdornier) 2026-02-06 00:31:16,771 [ scc.merge] INFO - PR 10 Rdornier 'Install jars' (user: Rdornier) 2026-02-06 00:31:16,772 [ scc.merge] INFO Already up to date. 2026-02-06 00:31:16,772 [ scc.merge] INFO 2026-02-06 00:31:16,772 [ scc.merge] INFO Merged PRs: 2026-02-06 00:31:16,772 [ scc.merge] INFO - PR 13 dominikl 'Zarr v3 support' 2026-02-06 00:31:16,772 [ scc.merge] INFO 2026-02-06 00:31:16,772 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-06 00:31:16,772 [ scc.git] DEBUG Calling 'git remote' Merge all submodules2026-02-06 00:31:17,197 [ scc.config] DEBUG Found github.token 2026-02-06 00:31:17,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-06 00:31:17,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:17,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:18,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-06 00:31:18,182 [ scc.gh] DEBUG 4249 remaining from 5000 (Reset at 00:02 2026-02-06 00:31:18,182 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-06 00:31:18,184 [ scc.git] DEBUG Check current status 2026-02-06 00:31:18,185 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-06 00:31:18,187 [ scc.git] DEBUG 9da02c8 merge master -Dorg -Snone 2026-02-06 00:31:18,187 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-06 00:31:18,226 [ scc.config] DEBUG Found remote.origin.url 2026-02-06 00:31:18,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2026-02-06 00:31:19,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-06 00:31:19,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-06 00:31:20,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-06 00:31:20,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-06 00:31:20,505 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-06 00:31:20,543 [ scc.git] DEBUG Resetting... 2026-02-06 00:31:20,543 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-06 00:31:20,548 [ scc.git] DEBUG HEAD is now at 9da02c8 merge master -Dorg -Snone 2026-02-06 00:31:20,548 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-06 00:31:20,584 [ scc.git] DEBUG Check current status 2026-02-06 00:31:20,584 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-06 00:31:20,586 [ scc.git] DEBUG 9da02c8 merge master -Dorg -Snone 2026-02-06 00:31:20,586 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-06 00:31:20,621 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-06 00:31:20,621 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-06 00:31:20,621 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-06 00:31:20,621 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-06 00:31:20,621 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-06 00:31:20,621 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-02-06 00:31:20,621 [ scc.repo] DEBUG ## PRs found: 2026-02-06 00:31:21,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2026-02-06 00:31:21,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/13 HTTP/1.1" 200 None 2026-02-06 00:31:22,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/03d05fa27fa396db6cc5b15f1ba3616a9ff263f1 HTTP/1.1" 200 None 2026-02-06 00:31:22,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/03d05fa27fa396db6cc5b15f1ba3616a9ff263f1/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-06 00:31:23,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/03d05fa27fa396db6cc5b15f1ba3616a9ff263f1/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-06 00:31:23,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/03d05fa27fa396db6cc5b15f1ba3616a9ff263f1 HTTP/1.1" 200 None 2026-02-06 00:31:23,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/statuses/03d05fa27fa396db6cc5b15f1ba3616a9ff263f1?per_page=1 HTTP/1.1" 200 2 2026-02-06 00:31:23,916 [ scc.repo] DEBUG - PR 13 dominikl 'Zarr v3 support' 2026-02-06 00:31:24,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/12 HTTP/1.1" 200 None 2026-02-06 00:31:25,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/10 HTTP/1.1" 200 None 2026-02-06 00:31:25,001 [ scc.repo] DEBUG ## Branches found: 2026-02-06 00:31:25,001 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:25,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:25,004 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-06 00:31:25,006 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-06 00:31:25,006 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-06 00:31:25,009 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-06 00:31:25,011 [ scc.git] DEBUG Already up to date. 2026-02-06 00:31:25,012 [ scc.git] DEBUG Calling 'git fetch origin pull/13/head' 2026-02-06 00:31:25,296 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2026-02-06 00:31:25,296 [ scc.git] DEBUG * branch refs/pull/13/head -> FETCH_HEAD 2026-02-06 00:31:25,299 [ scc.git] DEBUG ## Unique users: [] 2026-02-06 00:31:25,300 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:25,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:25,302 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...03d05fa27fa396db6cc5b15f1ba3616a9ff263f1' 2026-02-06 00:31:25,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:25,306 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 13 (Zarr v3 support) 03d05fa27fa396db6cc5b15f1ba3616a9ff263f1' 2026-02-06 00:31:25,309 [ scc.git] DEBUG Already up to date. 2026-02-06 00:31:25,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-06 00:31:25,455 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-06 00:31:25,491 [ scc.git] DEBUG Get sha1 of %s 2026-02-06 00:31:25,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-06 00:31:25,493 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-06 00:31:25,529 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-06 00:31:25,531 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc179a54e50> has no local changes 2026-02-06 00:31:25,532 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-zarr-pixel-buffer Excluded PRs: - PR 12 Rdornier 'Adding other required dependencies' (user: Rdornier) - PR 10 Rdornier 'Install jars' (user: Rdornier) Already up to date. Merged PRs: - PR 13 dominikl 'Zarr v3 support' Generated by OMERO-zarr-pixel-buffer-push#42 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/42/)' 2026-02-06 00:31:25,537 [ scc.git] DEBUG [detached HEAD 407ca0b] merge master -Dorg -Ssuccess-only 2026-02-06 00:31:25,537 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2026-02-06 00:31:25,537 [ scc.merge] INFO Excluded PRs: 2026-02-06 00:31:25,537 [ scc.merge] INFO - PR 12 Rdornier 'Adding other required dependencies' (user: Rdornier) 2026-02-06 00:31:25,537 [ scc.merge] INFO - PR 10 Rdornier 'Install jars' (user: Rdornier) 2026-02-06 00:31:25,537 [ scc.merge] INFO Already up to date. 2026-02-06 00:31:25,537 [ scc.merge] INFO 2026-02-06 00:31:25,537 [ scc.merge] INFO Merged PRs: 2026-02-06 00:31:25,537 [ scc.merge] INFO - PR 13 dominikl 'Zarr v3 support' 2026-02-06 00:31:25,537 [ scc.merge] INFO 2026-02-06 00:31:25,537 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-06 00:31:25,537 [ scc.git] DEBUG Calling 'git remote' Update component versions grep: settings.gradle: No such file or directory Commit all component version changes HEAD detached from f7116d6 nothing to commit, working tree clean 2026-02-06 00:31:31,700 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-zarr-pixel-buffer/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS