Skip to content

Changes

Summary

  1. Bump bioformats from `e4ffbe8` to `e431517` (details)
  2. merge master -Dorg -Ssuccess-only (details)
  3. Update component versions (details)
Commit 3e5984e8b8247344e7398e24902a0d24deeda659 by noreply
Bump bioformats from `e4ffbe8` to `e431517`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `e4ffbe8` to `e431517`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/e4ffbe89ba6cb9fd44f92fb4dfa4cc64f3918ba5...e431517dd4c848a5121536884d13dc42476d0771)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit 40eee95203dbc5bf8dfb21d2d3e6fb28224a058f by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 640 dependabot[bot] 'Bump bio-formats-documentation from `d5ec673` to `e9f8a22`'
  - PR 641 dependabot[bot] 'Bump bioformats from `e4ffbe8` to `e431517`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Already up to date.

Merged PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4233 tstoeter 'Handle UnknownFormatException for batch processing multiple files.' (user: tstoeter)
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4164 melissalinkert 'Reduce DICOM write time'
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'
  - PR 4234 sbesson 'CV7000: handle NullPointerException when resetting allFiles in close()'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 40 atbest 'Implement Zstandard compression' (user: atbest)
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'
  - PR 41 rharkes 'Add LZ4 compression/decompression'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#197 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/197/)
The file was modified bio-formats-examples (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-jai (diff)
The file was modified ZarrReader (diff)
The file was modified ome-mdbtools (diff)
The file was modified ome-common-java (diff)
The file was modified ome-metakit (diff)
The file was modified ome-stubs (diff)
The file was modified ome-codecs (diff)
The file was modified ome-poi (diff)
The file was modified ome-model (diff)
The file was modified bioformats (diff)
The file was modified .gitmodules (diff)
Commit 19ac73b77c628faa3f3c81aee3195c2d82826411 by snoopycrimecop
Update component versions
The file was modified ome-poi (diff)
The file was modified ome-codecs (diff)
The file was modified bio-formats-examples (diff)
The file was modified bioformats (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-metakit (diff)