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Started by upstream project "BIOFORMATS-build" build number 334 originally caused by: Started by upstream project "Trigger" build number 358 originally caused by: Started by timer Running as SYSTEM Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-build/label/testintegration The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/snoopycrimecop/bio-formats-build # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/snoopycrimecop/bio-formats-build > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f93a5dc8d3f74385f327eef49a65b5d8c16eaa6b (origin/merge_ci) > git config core.sparsecheckout # timeout=10 > git checkout -f f93a5dc8d3f74385f327eef49a65b5d8c16eaa6b # timeout=10 Commit message: "Update component versions" > git rev-list --no-walk 288790c25e79a0f5e18e70918572d8140ae02437 # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.ome-common-java.url # timeout=10 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10 > git config --get submodule.ome-model.url # timeout=10 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10 > git config --get submodule.ome-poi.url # timeout=10 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10 > git config --get submodule.ome-mdbtools.url # timeout=10 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10 > git config --get submodule.ome-jai.url # timeout=10 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10 > git config --get submodule.ome-codecs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10 > git config --get submodule.ome-metakit.url # timeout=10 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10 > git config --get submodule.ome-stubs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10 > git config --get submodule.bioformats.url # timeout=10 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10 > git config --get submodule.bio-formats-documentation.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10 > git config --get submodule.bio-formats-examples.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10 > git config --get submodule.ZarrReader.url # timeout=10 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10 > git submodule update --init --recursive --remote ome-common-java # timeout=10 > git submodule update --init --recursive --remote ome-model # timeout=10 > git submodule update --init --recursive --remote ome-poi # timeout=10 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10 > git submodule update --init --recursive --remote ome-jai # timeout=10 > git submodule update --init --recursive --remote ome-codecs # timeout=10 > git submodule update --init --recursive --remote ome-metakit # timeout=10 > git submodule update --init --recursive --remote ome-stubs # timeout=10 > git submodule update --init --recursive --remote bioformats # timeout=10 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10 > git submodule update --init --recursive --remote ZarrReader # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 [testintegration] $ /bin/bash -xe /tmp/jenkins16131748911685836418.sh + python3 -mvenv venv + source /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-build/label/testintegration/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + cd bio-formats-build + pip install -r bio-formats-documentation/requirements.txt Requirement already satisfied: Sphinx in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from -r bio-formats-documentation/requirements.txt (line 1)) (7.2.6) Requirement already satisfied: sphinx-rtd-theme in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from -r bio-formats-documentation/requirements.txt (line 2)) (2.0.0) Requirement already satisfied: sphinxcontrib-devhelp in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.0.6) Requirement already satisfied: docutils<0.21,>=0.18.1 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (0.20.1) Requirement already satisfied: Jinja2>=3.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (3.1.3) Requirement already satisfied: sphinxcontrib-qthelp in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.0.7) Requirement already satisfied: sphinxcontrib-jsmath in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.0.1) Requirement already satisfied: requests>=2.25.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.31.0) Requirement already satisfied: Pygments>=2.14 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.17.2) Requirement already satisfied: importlib-metadata>=4.8 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (7.0.2) Requirement already satisfied: packaging>=21.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (24.0) Requirement already satisfied: snowballstemmer>=2.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.2.0) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.0.5) Requirement already satisfied: imagesize>=1.3 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.4.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (0.7.16) Requirement already satisfied: sphinxcontrib-applehelp in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.0.8) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (1.1.10) Requirement already satisfied: babel>=2.9 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.14.0) Requirement already satisfied: sphinxcontrib-jquery<5,>=4 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from sphinx-rtd-theme->-r bio-formats-documentation/requirements.txt (line 2)) (4.1) Requirement already satisfied: zipp>=0.5 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from importlib-metadata>=4.8->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (3.18.0) Requirement already satisfied: MarkupSafe>=2.0 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Jinja2>=3.0->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.1.5) Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (3.3.2) Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2024.2.2) Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r bio-formats-documentation/requirements.txt (line 1)) (2.2.1) WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. You should consider upgrading via the '/home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/bin/python3 -m pip install --upgrade pip' command. + pip install -r ome-model/requirements.txt Requirement already satisfied: Genshi in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from -r ome-model/requirements.txt (line 6)) (0.7.7) Requirement already satisfied: six in /home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/lib/python3.9/site-packages (from Genshi->-r ome-model/requirements.txt (line 6)) (1.16.0) WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available. You should consider upgrading via the '/home/omero/workspace/BIOFORMATS-build/label/testintegration/venv/bin/python3 -m pip install --upgrade pip' command. + mvn deploy -DskipTests -DaltDeploymentRepository=ome.staging::default::http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.codehaus.mojo:exec-maven-plugin @ line 369, column 15 [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:OMEZarrReader:jar:0.6.1-SNAPSHOT [WARNING] 'build.plugins.plugin.version' for org.codehaus.mojo:license-maven-plugin is missing. @ line 195, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [WARNING] The project org.openmicroscopy:ome-model:pom:6.5.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:ome-poi:jar:5.3.10-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:ome-mdbtools:jar:5.3.4-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:ome-jai:jar:0.1.5-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:ome-codecs:jar:1.1.1-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:ome-stubs:pom:6.0.3-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project org.openmicroscopy:metakit:jar:5.8.9-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project ome:bio-formats-examples:jar:8.1.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [WARNING] The project ome:bio-formats-build:pom:6.0.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] OME Common Java [jar] [INFO] OME Model [pom] [INFO] Metadata model specification [jar] [INFO] OME XML library [jar] [INFO] OME POI [jar] [INFO] MDB Tools (Java port) [jar] [INFO] OME JAI [jar] [INFO] OME Codecs [jar] [INFO] OME Stubs [pom] [INFO] MIPAV stubs [jar] [INFO] Metakit [jar] [INFO] Bio-Formats projects [pom] [INFO] libjpeg-turbo Java bindings [jar] [INFO] Bio-Formats API [jar] [INFO] BSD Bio-Formats readers and writers [jar] [INFO] Bio-Formats library [jar] [INFO] Bio-Formats Plugins for ImageJ [jar] [INFO] Bio-Formats command line tools [jar] [INFO] bioformats_package bundle [pom] [INFO] Bio-Formats testing framework [jar] [INFO] Bio-Formats examples [jar] [INFO] Bio-Formats documentation [jar] [INFO] Implementation of Bio-Formats readers for the next-generation file formats [jar] [INFO] Bio-Formats top-level build [pom] [INFO] [INFO] -------------------< org.openmicroscopy:ome-common >-------------------- [INFO] Building OME Common Java 6.0.26-SNAPSHOT [1/24] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ ome-common --- [INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java [INFO] Storing buildNumber: f92e21fa8388d84ceb2345f417cc8a1b79482d1b at timestamp: 1738368391434 [WARNING] Cannot get the branch information from the git repository: Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref [INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java [INFO] Storing buildScmBranch: UNKNOWN [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ ome-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ ome-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 56 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/classes [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/main/java/loci/common/DebugTools.java: Some input files use or override a deprecated API. [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/main/java/loci/common/DebugTools.java: Recompile with -Xlint:deprecation for details. [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/main/java/loci/common/LogbackTools.java: Some input files use unchecked or unsafe operations. [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/main/java/loci/common/LogbackTools.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ ome-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ ome-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 55 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/test-classes [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/test/java/loci/common/utests/DataToolsTest.java: Some input files use or override a deprecated API. [INFO] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/src/test/java/loci/common/utests/DataToolsTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ ome-common --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ ome-common --- [INFO] Building jar: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/ome-common-6.0.26-SNAPSHOT.jar [INFO] [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ ome-common --- [INFO] Building jar: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/ome-common-6.0.26-SNAPSHOT-tests.jar [INFO] [INFO] --- maven-javadoc-plugin:3.10.0:jar (attach-javadocs) @ ome-common --- [INFO] No previous run data found, generating javadoc. [INFO] Loading source files for package loci.common... Loading source files for package loci.common.enumeration... Loading source files for package loci.common.image... Loading source files for package loci.common.services... Loading source files for package loci.common.xml... Constructing Javadoc information... Standard Doclet version 11.0.24 Building tree for all the packages and classes... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/AbstractNIOHandle.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/ByteArrayHandle.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/BZip2Handle.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/CaseInsensitiveLocation.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/CBZip2InputStream.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/Constants.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/CRC.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/DataTools.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/loci/common/DateTools.html... 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Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/overview-summary.html... Generating /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs/help-doc.html... 1 error 100 warnings [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] OME Common Java 6.0.26-SNAPSHOT .................... FAILURE [02:26 min] [INFO] OME Model 6.5.0-SNAPSHOT ........................... SKIPPED [INFO] Metadata model specification 6.5.0-SNAPSHOT ........ SKIPPED [INFO] OME XML library 6.5.0-SNAPSHOT ..................... SKIPPED [INFO] OME POI 5.3.10-SNAPSHOT ............................ SKIPPED [INFO] MDB Tools (Java port) 5.3.4-SNAPSHOT ............... SKIPPED [INFO] OME JAI 0.1.5-SNAPSHOT ............................. SKIPPED [INFO] OME Codecs 1.1.1-SNAPSHOT .......................... SKIPPED [INFO] OME Stubs 6.0.3-SNAPSHOT ........................... SKIPPED [INFO] MIPAV stubs 6.0.3-SNAPSHOT ......................... SKIPPED [INFO] Metakit 5.8.9-SNAPSHOT ............................. SKIPPED [INFO] Bio-Formats projects 8.1.0-SNAPSHOT ................ SKIPPED [INFO] libjpeg-turbo Java bindings 8.1.0-SNAPSHOT ......... SKIPPED [INFO] Bio-Formats API 8.1.0-SNAPSHOT ..................... SKIPPED [INFO] BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT . SKIPPED [INFO] Bio-Formats library 8.1.0-SNAPSHOT ................. SKIPPED [INFO] Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT ...... SKIPPED [INFO] Bio-Formats command line tools 8.1.0-SNAPSHOT ...... SKIPPED [INFO] bioformats_package bundle 8.1.0-SNAPSHOT ........... SKIPPED [INFO] Bio-Formats testing framework 8.1.0-SNAPSHOT ....... SKIPPED [INFO] Bio-Formats examples 8.1.0-SNAPSHOT ................ SKIPPED [INFO] Bio-Formats documentation 8.1.0-SNAPSHOT ........... SKIPPED [INFO] Implementation of Bio-Formats readers for the next-generation file formats 0.6.1-SNAPSHOT SKIPPED [INFO] Bio-Formats top-level build 6.0.0-SNAPSHOT ......... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 02:28 min [INFO] Finished at: 2025-02-01T00:08:56Z [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:3.10.0:jar (attach-javadocs) on project ome-common: MavenReportException: Error while generating Javadoc: [ERROR] Exit code: 1 [ERROR] javadoc: error - Error fetching URL: http://docs.oracle.com/javase/8/docs/api/ [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] javadoc: warning - The code being documented uses modules but the packages defined in https://docs.oracle.com/javase/8/docs/api/ are in the unnamed module. [ERROR] Command line was: /usr/lib/jvm/java-11-openjdk-11.0.24.0.8-2.el9.x86_64/bin/javadoc -J-Duser.language= -J-Duser.country= @options @packages [ERROR] [ERROR] Refer to the generated Javadoc files in '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ome-common-java/target/reports/apidocs' dir. [ERROR] [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Build step 'Execute shell' marked build as failure Archiving artifacts Finished: FAILURE