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#14 4300.4 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.jar
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#14 4300.4 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
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#14 4300.4 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
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#14 4300.4 Progress (2): 467 kB | 20/37 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/jcl-over-slf4j/1.7.7/jcl-over-slf4j-1.7.7.jar (17 kB at 69 kB/s)
#14 4300.5 Progress (4): 914 kB | 223/591 kB | 175/282 kB | 49/121 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar
#14 4300.5 Progress (4): 914 kB | 227/591 kB | 175/282 kB | 49/121 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar (914 kB at 3.7 MB/s)
#14 4300.5 Progress (3): 412/591 kB | 282 kB | 121 kB
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#14 4300.5 Progress (2): 164/232 kB | 60 kB
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#14 4300.5 Progress (3): 232 kB | 90 kB | 57/428 kB
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#14 4300.6 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar (428 kB at 1.3 MB/s)
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#14 4300.8 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
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#14 4302.4 [output clipped, log limit 2MiB reached]
#14 4395.6 SLF4J: No SLF4J providers were found.
#14 4395.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 4395.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 4405.9s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.703 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.331 [echo] isSnapshot = true
#16 1.441
#16 1.441 copy-jars:
#16 1.441
#16 1.441 deps-formats-api:
#16 1.523 [echo] isSnapshot = true
#16 1.581
#16 1.581 install-pom:
#16 1.759 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.773 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.777 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.778
#16 1.778 jar-formats-api:
#16 1.888 [echo] isSnapshot = true
#16 2.069
#16 2.069 init-title:
#16 2.069 [echo] ----------=========== formats-api ===========----------
#16 2.070
#16 2.070 init-timestamp:
#16 2.075
#16 2.075 init:
#16 2.075
#16 2.075 copy-resources:
#16 2.076 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.089 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.092
#16 2.092 compile:
#16 2.271 [resolver:resolve] Resolving artifacts
#16 2.298 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.737 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.438 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.438 [javac] import loci.common.ReflectedUniverse;
#16 3.438 [javac] ^
#16 3.638 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.638 [javac] int currentIndex = r.getCoreIndex();
#16 3.639 [javac] ^
#16 3.639 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.639 [javac] r.setCoreIndex(coreIndex);
#16 3.639 [javac] ^
#16 3.639 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.639 [javac] r.setCoreIndex(currentIndex);
#16 3.639 [javac] ^
#16 3.739 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.739 [javac] public void setCoreIndex(int no) {
#16 3.740 [javac] ^
#16 3.740 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.740 [javac] public int getCoreIndex() {
#16 3.740 [javac] ^
#16 3.740 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.740 [javac] public int coreIndexToSeries(int index)
#16 3.740 [javac] ^
#16 3.740 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.740 [javac] public int seriesToCoreIndex(int series)
#16 3.740 [javac] ^
#16 3.740 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.740 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.740 [javac] ^
#16 3.841 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.841 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.841 [javac] ^
#16 3.841 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.841 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.841 [javac] ^
#16 3.841 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.841 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.842 [javac] ^
#16 3.842 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.842 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.842 [javac] ^
#16 3.942 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.942 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.942 [javac] ^
#16 3.942 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.942 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.942 [javac] ^
#16 4.043 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.043 [javac] public void setCoreIndex(int no) {
#16 4.043 [javac] ^
#16 4.043 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.043 [javac] public int getCoreIndex() {
#16 4.043 [javac] ^
#16 4.043 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.043 [javac] public int coreIndexToSeries(int index) {
#16 4.043 [javac] ^
#16 4.043 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.043 [javac] public int seriesToCoreIndex(int series) {
#16 4.043 [javac] ^
#16 4.043 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.043 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.044 [javac] ^
#16 4.044 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.044 [javac] return getReader().getCoreMetadataList();
#16 4.044 [javac] ^
#16 4.044 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.044 [javac] return getReader().getCoreIndex();
#16 4.044 [javac] ^
#16 4.044 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.044 [javac] getReader().setCoreIndex(no);
#16 4.044 [javac] ^
#16 4.044 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.044 [javac] return getReader().seriesToCoreIndex(series);
#16 4.044 [javac] ^
#16 4.044 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.044 [javac] return getReader().coreIndexToSeries(index);
#16 4.044 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.145 [javac] public void setCoreIndex(int no) {
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.145 [javac] public int getCoreIndex() {
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.145 [javac] public int coreIndexToSeries(int index) {
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.145 [javac] public int seriesToCoreIndex(int series) {
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.145 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.145 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.145 [javac] return reader.getCoreIndex();
#16 4.145 [javac] ^
#16 4.145 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.146 [javac] reader.setCoreIndex(no);
#16 4.146 [javac] ^
#16 4.146 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.146 [javac] return reader.seriesToCoreIndex(series);
#16 4.146 [javac] ^
#16 4.146 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.146 [javac] return reader.coreIndexToSeries(index);
#16 4.146 [javac] ^
#16 4.246 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.246 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.246 [javac] 36 warnings
#16 4.296
#16 4.296 formats-api.jar:
#16 4.296 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.319 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.350 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.354 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.407 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.409 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.412 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.413
#16 4.413 deps-turbojpeg:
#16 4.413
#16 4.413 jar-turbojpeg:
#16 4.518 [echo] isSnapshot = true
#16 4.684
#16 4.684 init-title:
#16 4.684 [echo] ----------=========== turbojpeg ===========----------
#16 4.684
#16 4.684 init-timestamp:
#16 4.684
#16 4.684 init:
#16 4.684
#16 4.684 copy-resources:
#16 4.685 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.686
#16 4.686 compile:
#16 4.696 [resolver:resolve] Resolving artifacts
#16 4.699 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.901 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.502 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.502 [javac] protected void finalize() throws Throwable {
#16 5.502 [javac] ^
#16 5.502 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.502 [javac] super.finalize();
#16 5.502 [javac] ^
#16 5.578 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.578 [javac] protected void finalize() throws Throwable {
#16 5.578 [javac] ^
#16 5.578 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.578 [javac] super.finalize();
#16 5.578 [javac] ^
#16 5.578 [javac] 5 warnings
#16 5.579
#16 5.579 jar:
#16 5.584 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.767 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 5.774 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 5.777 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 5.779 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.782 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.783
#16 5.783 deps-formats-bsd:
#16 5.783
#16 5.783 jar-formats-bsd:
#16 5.882 [echo] isSnapshot = true
#16 6.032
#16 6.032 init-title:
#16 6.033 [echo] ----------=========== formats-bsd ===========----------
#16 6.033
#16 6.033 init-timestamp:
#16 6.033
#16 6.033 init:
#16 6.033
#16 6.033 copy-resources:
#16 6.033 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.036 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.037
#16 6.037 compile:
#16 6.246 [resolver:resolve] Resolving artifacts
#16 6.273 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.582 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.583 [javac] import loci.common.ReflectedUniverse;
#16 7.583 [javac] ^
#16 7.883 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.883 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.883 [javac] ^
#16 7.883 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.883 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.883 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.984 [javac] int n = reader.getCoreMetadataList().size();
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.984 [javac] reader.setCoreIndex(coreIndex);
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.984 [javac] int n = reader.getCoreMetadataList().size();
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.984 [javac] int n = reader.getCoreMetadataList().size();
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.984 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.984 [javac] int n = reader.getCoreMetadataList().size();
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.984 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.984 [javac] ^
#16 7.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.984 [javac] int n = reader.getCoreMetadataList().size();
#16 7.984 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.985 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.985 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.985 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.985 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.985 [javac] ^
#16 8.086 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.086 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.086 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.186 [javac] BitWriter out = new BitWriter();
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.186 [javac] BitWriter out = new BitWriter();
#16 8.186 [javac] ^
#16 8.386 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.386 [javac] return new Double(v);
#16 8.386 [javac] ^
#16 8.987 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1926: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.987 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.987 [javac] ^
#16 8.987 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1933: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.987 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.987 [javac] ^
#16 8.987 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1940: warning: [deprecation] Double(double) in Double has been deprecated
#16 8.987 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.987 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.088 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.088 [javac] ^
#16 9.288 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.288 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.288 [javac] ^
#16 9.288 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.288 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.288 [javac] ^
#16 9.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.388 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.388 [javac] ^
#16 9.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.389 [javac] protected ReflectedUniverse r;
#16 9.389 [javac] ^
#16 9.389 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.389 [javac] r = new ReflectedUniverse();
#16 9.389 [javac] ^
#16 9.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1005: warning: [deprecation] NM in UNITS has been deprecated
#16 9.489 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.489 [javac] ^
#16 9.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1037: warning: [deprecation] MM in UNITS has been deprecated
#16 9.489 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.489 [javac] ^
#16 9.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1050: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1051: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1070: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1074: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1080: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1128: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.490 [javac] ^
#16 9.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1132: warning: [deprecation] MM in UNITS has been deprecated
#16 9.490 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.490 [javac] ^
#16 9.590 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.590 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.590 [javac] ^
#16 9.681 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.681 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.681 [javac] ^
#16 9.681 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.681 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.681 [javac] ^
#16 9.681 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.681 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.681 [javac] 46 warnings
#16 9.682
#16 9.682 formats-bsd.jar:
#16 9.690 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.797 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 9.801 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 9.816 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 9.819 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 9.821 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.822
#16 9.822 deps-formats-gpl:
#16 9.822
#16 9.822 jar-formats-gpl:
#16 9.916 [echo] isSnapshot = true
#16 10.07
#16 10.07 init-title:
#16 10.07 [echo] ----------=========== formats-gpl ===========----------
#16 10.07
#16 10.07 init-timestamp:
#16 10.07
#16 10.07 init:
#16 10.07
#16 10.07 copy-resources:
#16 10.07 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.07 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.07
#16 10.07 compile:
#16 10.47 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.74 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.16 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.16 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.18 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.20 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.33 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.38 [resolver:resolve] Resolving artifacts
#16 11.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.43 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.43 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.46 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.46 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.86 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.87 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.89 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.19 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 13.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.29 [javac] import loci.formats.codec.BitWriter;
#16 13.29 [javac] ^
#16 13.39 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.39 [javac] import loci.formats.codec.BitWriter;
#16 13.39 [javac] ^
#16 15.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.20 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.20 [javac] ^
#16 15.20 [javac] cast to Object for a varargs call
#16 15.20 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.30 [javac] BitWriter bits = null;
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.30 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.30 [javac] ^
#16 15.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.60 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.60 [javac] ^
#16 16.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.00 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.00 [javac] ^
#16 16.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.00 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.00 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.28 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.28 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.28 [javac] String groupName = group.getName();
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.28 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.28 [javac] String attributeName = attribute.getName();
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.28 [javac] String variableName = variable.getName();
#16 16.28 [javac] ^
#16 16.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.28 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.28 [javac] ^
#16 16.28 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.28 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.28 [javac] 16 warnings
#16 16.28
#16 16.28 formats-gpl.jar:
#16 16.29 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.42 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.43 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.43 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.43 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.43
#16 16.43 deps-bio-formats-plugins:
#16 16.43
#16 16.43 jar-bio-formats-plugins:
#16 16.53 [echo] isSnapshot = true
#16 16.68
#16 16.68 init-title:
#16 16.68 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.68
#16 16.68 init-timestamp:
#16 16.68
#16 16.68 init:
#16 16.68
#16 16.68 copy-resources:
#16 16.68 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.68 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.68
#16 16.68 compile:
#16 16.93 [resolver:resolve] Resolving artifacts
#16 16.94 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.25 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 18.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.05 [javac] import loci.common.ReflectedUniverse;
#16 18.05 [javac] ^
#16 18.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.05 [javac] import loci.common.ReflectedUniverse;
#16 18.05 [javac] ^
#16 18.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.45 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.45 [javac] ^
#16 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.55 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.55 [javac] ^
#16 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.55 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.55 [javac] ^
#16 18.65 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.65 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.65 [javac] ^
#16 18.65 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.65 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.65 [javac] ^
#16 19.02 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.02 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.02 [javac] 8 warnings
#16 19.02
#16 19.02 bio-formats-plugins.jar:
#16 19.03 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.06 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.06 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.07 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.07 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.07
#16 19.07 deps-bio-formats-tools:
#16 19.07
#16 19.07 jar-bio-formats-tools:
#16 19.16 [echo] isSnapshot = true
#16 19.31
#16 19.31 init-title:
#16 19.31 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.31
#16 19.31 init-timestamp:
#16 19.31
#16 19.31 init:
#16 19.31
#16 19.31 copy-resources:
#16 19.31 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.31
#16 19.31 compile:
#16 19.55 [resolver:resolve] Resolving artifacts
#16 19.56 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.87 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.75 [javac] 1 warning
#16 20.75
#16 20.75 bio-formats-tools.jar:
#16 20.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.76 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.77 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.77 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.77 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.77
#16 20.77 deps-tests:
#16 20.77
#16 20.77 jar-tests:
#16 20.86 [echo] isSnapshot = true
#16 21.02
#16 21.02 init-title:
#16 21.02 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.02
#16 21.02 init-timestamp:
#16 21.02
#16 21.02 init:
#16 21.02
#16 21.02 copy-resources:
#16 21.02 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.02
#16 21.02 compile:
#16 21.32 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.81 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.21 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.22 [resolver:resolve] Resolving artifacts
#16 22.23 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.27 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.69 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.96 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.97 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.18 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.18 [javac] ^
#16 24.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.18 [javac] reader.setCoreIndex(index);
#16 24.18 [javac] ^
#16 24.38 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.38 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.38 [javac] ^
#16 24.38 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.38 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.38 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.58 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.58 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.58 [javac] ^
#16 24.65 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.65 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.65 [javac] 7 warnings
#16 24.66
#16 24.66 tests.jar:
#16 24.66 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.67 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 24.68 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 24.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 24.68 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.68 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.68
#16 24.68 jars:
#16 24.68
#16 24.68 copy-jars:
#16 24.68
#16 24.68 deps-formats-api:
#16 24.73 [echo] isSnapshot = true
#16 24.78
#16 24.78 install-pom:
#16 24.92 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 24.93 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.93 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.93
#16 24.93 jar-formats-api:
#16 25.02 [echo] isSnapshot = true
#16 25.20
#16 25.20 init-title:
#16 25.20 [echo] ----------=========== formats-api ===========----------
#16 25.20
#16 25.20 init-timestamp:
#16 25.20
#16 25.20 init:
#16 25.20
#16 25.20 copy-resources:
#16 25.20
#16 25.20 compile:
#16 25.34 [resolver:resolve] Resolving artifacts
#16 25.35
#16 25.35 formats-api.jar:
#16 25.36 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.37 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.37 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.37
#16 25.37 deps-turbojpeg:
#16 25.37
#16 25.37 jar-turbojpeg:
#16 25.46 [echo] isSnapshot = true
#16 25.60
#16 25.60 init-title:
#16 25.60 [echo] ----------=========== turbojpeg ===========----------
#16 25.60
#16 25.60 init-timestamp:
#16 25.60
#16 25.60 init:
#16 25.60
#16 25.60 copy-resources:
#16 25.60
#16 25.60 compile:
#16 25.61 [resolver:resolve] Resolving artifacts
#16 25.61
#16 25.61 jar:
#16 25.62 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 25.62 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 25.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 25.62 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.63 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.63
#16 25.63 deps-formats-bsd:
#16 25.63
#16 25.63 jar-formats-bsd:
#16 25.71 [echo] isSnapshot = true
#16 25.85
#16 25.85 init-title:
#16 25.85 [echo] ----------=========== formats-bsd ===========----------
#16 25.85
#16 25.85 init-timestamp:
#16 25.85
#16 25.85 init:
#16 25.85
#16 25.85 copy-resources:
#16 25.86
#16 25.86 compile:
#16 26.04 [resolver:resolve] Resolving artifacts
#16 26.06
#16 26.06 formats-bsd.jar:
#16 26.09 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.10 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.10 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.10
#16 26.10 deps-formats-gpl:
#16 26.10
#16 26.10 jar-formats-gpl:
#16 26.19 [echo] isSnapshot = true
#16 26.33
#16 26.33 init-title:
#16 26.33 [echo] ----------=========== formats-gpl ===========----------
#16 26.33
#16 26.33 init-timestamp:
#16 26.33
#16 26.33 init:
#16 26.33
#16 26.33 copy-resources:
#16 26.33
#16 26.33 compile:
#16 26.55 [resolver:resolve] Resolving artifacts
#16 26.57
#16 26.57 formats-gpl.jar:
#16 26.60 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 26.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 26.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 26.61 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.61
#16 26.61 deps-bio-formats-plugins:
#16 26.61
#16 26.61 jar-bio-formats-plugins:
#16 26.70 [echo] isSnapshot = true
#16 26.84
#16 26.84 init-title:
#16 26.84 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.84
#16 26.84 init-timestamp:
#16 26.84
#16 26.84 init:
#16 26.84
#16 26.84 copy-resources:
#16 26.84
#16 26.84 compile:
#16 27.07 [resolver:resolve] Resolving artifacts
#16 27.08
#16 27.08 bio-formats-plugins.jar:
#16 27.09 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.10 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.10 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.10 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.10
#16 27.10 deps-bio-formats-tools:
#16 27.10
#16 27.10 jar-bio-formats-tools:
#16 27.19 [echo] isSnapshot = true
#16 27.33
#16 27.33 init-title:
#16 27.33 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.33
#16 27.33 init-timestamp:
#16 27.33
#16 27.33 init:
#16 27.33
#16 27.33 copy-resources:
#16 27.33
#16 27.33 compile:
#16 27.56 [resolver:resolve] Resolving artifacts
#16 27.57
#16 27.57 bio-formats-tools.jar:
#16 27.57 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 27.57 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 27.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 27.58 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.58 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.58
#16 27.58 deps-tests:
#16 27.58
#16 27.58 jar-tests:
#16 27.67 [echo] isSnapshot = true
#16 27.81
#16 27.81 init-title:
#16 27.81 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.81
#16 27.81 init-timestamp:
#16 27.81
#16 27.81 init:
#16 27.81
#16 27.81 copy-resources:
#16 27.81
#16 27.81 compile:
#16 28.05 [resolver:resolve] Resolving artifacts
#16 28.06
#16 28.06 tests.jar:
#16 28.06 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.07 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.07 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.07
#16 28.07 jars:
#16 28.07
#16 28.07 tools:
#16 28.07 [echo] ----------=========== bioformats_package ===========----------
#16 28.16 [echo] isSnapshot = true
#16 28.30
#16 28.30 init-timestamp:
#16 28.30
#16 28.30 bundle:
#16 28.54 [resolver:resolve] Resolving artifacts
#16 28.55 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.60 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.63 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.63 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.70 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.71 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.76 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.78 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.05 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.07 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.13 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.14 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.15 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.15 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.81 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.89 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.96 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.01 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.21 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.35 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.81 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.83 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.93 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.07 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.30 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.37 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.66 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.67 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.12 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.23 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.28 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.46 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.53 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.95 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.51 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.51 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.56 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.56 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.57
#16 39.57 BUILD SUCCESSFUL
#16 39.57 Total time: 38 seconds
#16 DONE 39.8s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:978d47e41a64bc779a069d7cb1e7511a6ae7836ef0b0a380e1f32f60e97df21f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
Finished: SUCCESS
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