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Downloading from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar (5.8 kB at 19 kB/s)
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Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar (2.5 kB at 7.6 kB/s)
#14 465.2 Progress (4): 2.0/2.3 MB | 378 kB | 233/424 kB | 4.5 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
#14 465.2 Progress (4): 2.0/2.3 MB | 378 kB | 233/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar (378 kB at 1.1 MB/s)
#14 465.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
#14 465.2 Progress (3): 2.1/2.3 MB | 295/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar (424 kB at 1.2 MB/s)
#14 465.2 Downloaded from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar (4.5 kB at 13 kB/s)
#14 465.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
#14 465.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar
#14 465.2 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar (2.3 MB at 6.4 MB/s)
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#14 465.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
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#14 465.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.0/plexus-utils-3.3.0.jar
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#14 465.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0/doxia-sink-api-1.0.jar
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#14 465.3 Progress (1): 53/116 kB
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#14 465.3 Progress (4): 37 kB | 254/263 kB | 10 kB | 25/47 kB
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#14 465.3 Progress (3): 258/263 kB | 10 kB | 47 kB
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#14 465.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity/1.5/velocity-1.5.jar
#14 465.3 Progress (3): 263 kB | 47 kB | 4.1/55 kB
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#14 465.3 Progress (3): 55 kB | 193/392 kB | 20/208 kB
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#14 465.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar (55 kB at 115 kB/s)
#14 465.3 Progress (3): 201/392 kB | 29/208 kB | 4.1/49 kB
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#14 465.4 Progress (4): 392 kB | 208 kB | 61/571 kB | 47 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.0/doxia-module-fml-1.0.jar
#14 465.4 Progress (4): 392 kB | 208 kB | 65/571 kB | 47 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.1/commons-lang-2.1.jar (208 kB at 417 kB/s)
#14 465.4 Progress (3): 392 kB | 183/571 kB | 47 kB
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#14 465.4 Progress (3): 392 kB | 187/571 kB | 47 kB
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#14 465.4 Progress (2): 392 kB | 298/571 kB
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#14 465.4 Progress (2): 392 kB | 302/571 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity/1.5/velocity-1.5.jar (392 kB at 766 kB/s)
#14 465.4 Downloading from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar
#14 465.4 Progress (3): 470/571 kB | 19 kB | 20/28 kB
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#14 465.4 [output clipped, log limit 2MiB reached]
#14 568.5 SLF4J: No SLF4J providers were found.
#14 568.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 568.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 569.3 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 569.3 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 569.3 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 569.3 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 582.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.554 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.403 [echo] isSnapshot = true
#16 1.515
#16 1.515 copy-jars:
#16 1.516
#16 1.516 deps-formats-api:
#16 1.605 [echo] isSnapshot = true
#16 1.663
#16 1.663 install-pom:
#16 1.866 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.097 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.101 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.102
#16 2.102 jar-formats-api:
#16 2.223 [echo] isSnapshot = true
#16 2.382
#16 2.382 init-title:
#16 2.382 [echo] ----------=========== formats-api ===========----------
#16 2.382
#16 2.382 init-timestamp:
#16 2.390
#16 2.390 init:
#16 2.390
#16 2.390 copy-resources:
#16 2.391 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.404 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.406
#16 2.406 compile:
#16 2.589 [resolver:resolve] Resolving artifacts
#16 2.617 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.873 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.873 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 2.873 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 2.873 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 3.574 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.574 [javac] import loci.common.ReflectedUniverse;
#16 3.574 [javac] ^
#16 3.774 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.774 [javac] int currentIndex = r.getCoreIndex();
#16 3.775 [javac] ^
#16 3.775 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.775 [javac] r.setCoreIndex(coreIndex);
#16 3.775 [javac] ^
#16 3.775 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.775 [javac] r.setCoreIndex(currentIndex);
#16 3.775 [javac] ^
#16 3.975 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.975 [javac] public void setCoreIndex(int no) {
#16 3.975 [javac] ^
#16 3.975 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.976 [javac] public int getCoreIndex() {
#16 3.976 [javac] ^
#16 3.976 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.976 [javac] public int coreIndexToSeries(int index)
#16 3.976 [javac] ^
#16 3.976 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.976 [javac] public int seriesToCoreIndex(int series)
#16 3.976 [javac] ^
#16 3.976 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.976 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.976 [javac] ^
#16 4.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.076 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.077 [javac] ^
#16 4.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.077 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.077 [javac] ^
#16 4.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.077 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.077 [javac] ^
#16 4.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.077 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.077 [javac] ^
#16 4.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 4.077 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 4.077 [javac] ^
#16 4.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.178 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.178 [javac] ^
#16 4.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.178 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.178 [javac] ^
#16 4.278 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.278 [javac] public void setCoreIndex(int no) {
#16 4.278 [javac] ^
#16 4.278 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.278 [javac] public int getCoreIndex() {
#16 4.278 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.279 [javac] public int coreIndexToSeries(int index) {
#16 4.279 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.279 [javac] public int seriesToCoreIndex(int series) {
#16 4.279 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.279 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.279 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.279 [javac] return getReader().getCoreMetadataList();
#16 4.279 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.279 [javac] return getReader().getCoreIndex();
#16 4.279 [javac] ^
#16 4.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.280 [javac] getReader().setCoreIndex(no);
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.280 [javac] return getReader().seriesToCoreIndex(series);
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.280 [javac] return getReader().coreIndexToSeries(index);
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.280 [javac] public void setCoreIndex(int no) {
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.280 [javac] public int getCoreIndex() {
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.280 [javac] public int coreIndexToSeries(int index) {
#16 4.280 [javac] ^
#16 4.280 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.280 [javac] public int seriesToCoreIndex(int series) {
#16 4.280 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.281 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.281 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.281 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.281 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.281 [javac] return reader.getCoreIndex();
#16 4.281 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.281 [javac] reader.setCoreIndex(no);
#16 4.281 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.281 [javac] return reader.seriesToCoreIndex(series);
#16 4.281 [javac] ^
#16 4.281 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.281 [javac] return reader.coreIndexToSeries(index);
#16 4.281 [javac] ^
#16 4.482 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.482 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.482 [javac] 40 warnings
#16 4.519
#16 4.519 formats-api.jar:
#16 4.520 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.545 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.580 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.583 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.674 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.676 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.678 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.679
#16 4.679 deps-turbojpeg:
#16 4.679
#16 4.679 jar-turbojpeg:
#16 4.783 [echo] isSnapshot = true
#16 4.939
#16 4.939 init-title:
#16 4.940 [echo] ----------=========== turbojpeg ===========----------
#16 4.940
#16 4.940 init-timestamp:
#16 4.940
#16 4.940 init:
#16 4.940
#16 4.940 copy-resources:
#16 4.941 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.942
#16 4.942 compile:
#16 4.951 [resolver:resolve] Resolving artifacts
#16 4.954 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.157 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.157 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.157 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.157 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 5.841 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.842 [javac] protected void finalize() throws Throwable {
#16 5.842 [javac] ^
#16 5.842 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.842 [javac] super.finalize();
#16 5.842 [javac] ^
#16 5.842 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.842 [javac] protected void finalize() throws Throwable {
#16 5.842 [javac] ^
#16 5.842 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.842 [javac] super.finalize();
#16 5.842 [javac] ^
#16 5.842 [javac] 8 warnings
#16 5.842
#16 5.842 jar:
#16 5.846 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.032 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.039 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.121 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.125 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.129 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.131
#16 6.131 deps-formats-bsd:
#16 6.131
#16 6.131 jar-formats-bsd:
#16 6.251 [echo] isSnapshot = true
#16 6.397
#16 6.397 init-title:
#16 6.397 [echo] ----------=========== formats-bsd ===========----------
#16 6.397
#16 6.397 init-timestamp:
#16 6.397
#16 6.397 init:
#16 6.397
#16 6.397 copy-resources:
#16 6.398 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.401 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.402
#16 6.402 compile:
#16 6.631 [resolver:resolve] Resolving artifacts
#16 6.664 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.874 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.874 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 6.874 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 6.874 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 8.075 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.075 [javac] import loci.common.ReflectedUniverse;
#16 8.075 [javac] ^
#16 8.475 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.475 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.475 [javac] ^
#16 8.475 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.476 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.476 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.576 [javac] int n = reader.getCoreMetadataList().size();
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.576 [javac] reader.setCoreIndex(coreIndex);
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.576 [javac] int n = reader.getCoreMetadataList().size();
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.576 [javac] int n = reader.getCoreMetadataList().size();
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.576 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.576 [javac] int n = reader.getCoreMetadataList().size();
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.576 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.576 [javac] ^
#16 8.576 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.576 [javac] int n = reader.getCoreMetadataList().size();
#16 8.576 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.577 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.577 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.577 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.577 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.577 [javac] ^
#16 8.678 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.678 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.678 [javac] ^
#16 8.678 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.678 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 8.678 [javac] ^
#16 8.678 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.678 [javac] URL url = new URL(urlPath);
#16 8.678 [javac] ^
#16 8.778 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.778 [javac] BitWriter out = new BitWriter();
#16 8.778 [javac] ^
#16 8.778 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.778 [javac] BitWriter out = new BitWriter();
#16 8.778 [javac] ^
#16 8.979 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.979 [javac] return new Double(v);
#16 8.979 [javac] ^
#16 9.580 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1926: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.580 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.580 [javac] ^
#16 9.580 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1933: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.580 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.580 [javac] ^
#16 9.580 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1940: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.580 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.580 [javac] ^
#16 9.680 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.680 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.680 [javac] ^
#16 9.880 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.880 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.880 [javac] ^
#16 9.880 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.880 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.881 [javac] ^
#16 9.981 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.981 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.981 [javac] ^
#16 9.981 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.981 [javac] protected ReflectedUniverse r;
#16 9.981 [javac] ^
#16 9.981 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.981 [javac] r = new ReflectedUniverse();
#16 9.981 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:992: warning: [deprecation] NM in UNITS has been deprecated
#16 10.08 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1024: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1037: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1038: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1057: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1061: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1067: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1119: warning: [deprecation] MM in UNITS has been deprecated
#16 10.08 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.08 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.18 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.18 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.18 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.18 [javac] ^
#16 10.24 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.24 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.24 [javac] 51 warnings
#16 10.24
#16 10.24 formats-bsd.jar:
#16 10.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.37 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.37 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.38 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.38
#16 10.38 deps-formats-gpl:
#16 10.38
#16 10.38 jar-formats-gpl:
#16 10.47 [echo] isSnapshot = true
#16 10.61
#16 10.61 init-title:
#16 10.61 [echo] ----------=========== formats-gpl ===========----------
#16 10.61
#16 10.61 init-timestamp:
#16 10.61
#16 10.61 init:
#16 10.61
#16 10.61 copy-resources:
#16 10.61 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.61 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.61
#16 10.61 compile:
#16 10.86 [resolver:resolve] Resolving artifacts
#16 11.05 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.05 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.37 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.37 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.43 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.43 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.45 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.66 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 11.66 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 11.66 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 11.66 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 12.96 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.96 [javac] import loci.formats.codec.BitWriter;
#16 12.96 [javac] ^
#16 13.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.06 [javac] import loci.formats.codec.BitWriter;
#16 13.06 [javac] ^
#16 15.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.06 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.06 [javac] ^
#16 15.06 [javac] cast to Object for a varargs call
#16 15.06 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.16 [javac] BitWriter bits = null;
#16 15.16 [javac] ^
#16 15.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.16 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.16 [javac] ^
#16 15.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.46 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.46 [javac] ^
#16 15.87 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.87 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.87 [javac] ^
#16 15.87 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.87 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.87 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.17 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.17 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.17 [javac] String groupName = group.getName();
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.17 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.17 [javac] String attributeName = attribute.getName();
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.17 [javac] String variableName = variable.getName();
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.17 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.17 [javac] ^
#16 16.17 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.17 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.17 [javac] 19 warnings
#16 16.21
#16 16.21 formats-gpl.jar:
#16 16.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.37 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.38 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.38 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.38
#16 16.38 deps-bio-formats-plugins:
#16 16.38
#16 16.38 jar-bio-formats-plugins:
#16 16.48 [echo] isSnapshot = true
#16 16.63
#16 16.63 init-title:
#16 16.63 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.63
#16 16.63 init-timestamp:
#16 16.63
#16 16.63 init:
#16 16.63
#16 16.63 copy-resources:
#16 16.63 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.63 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.63
#16 16.63 compile:
#16 16.88 [resolver:resolve] Resolving artifacts
#16 16.90 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.11 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.11 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 17.11 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 17.11 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 18.01 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.01 [javac] import loci.common.ReflectedUniverse;
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.01 [javac] import loci.common.ReflectedUniverse;
#16 18.01 [javac] ^
#16 18.51 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.51 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.51 [javac] ^
#16 18.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.61 [javac] URL url = new URL(urlPath);
#16 18.61 [javac] ^
#16 18.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.61 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.61 [javac] ^
#16 18.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.61 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.61 [javac] ^
#16 18.81 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.81 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.81 [javac] ^
#16 18.81 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.81 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.81 [javac] ^
#16 19.01 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 19.01 [javac] url = new URL(path);
#16 19.01 [javac] ^
#16 19.21 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.21 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.21 [javac] 13 warnings
#16 19.29
#16 19.29 bio-formats-plugins.jar:
#16 19.30 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.33 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.33 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.34 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.34
#16 19.34 deps-bio-formats-tools:
#16 19.34
#16 19.34 jar-bio-formats-tools:
#16 19.43 [echo] isSnapshot = true
#16 19.57
#16 19.57 init-title:
#16 19.58 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.58
#16 19.58 init-timestamp:
#16 19.58
#16 19.58 init:
#16 19.58
#16 19.58 copy-resources:
#16 19.58 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.58
#16 19.58 compile:
#16 19.81 [resolver:resolve] Resolving artifacts
#16 19.83 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.03 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.03 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 20.03 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 20.03 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 21.18 [javac] 4 warnings
#16 21.18
#16 21.18 bio-formats-tools.jar:
#16 21.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.19 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 21.19 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 21.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 21.25 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 21.25 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.25
#16 21.25 deps-tests:
#16 21.25
#16 21.25 jar-tests:
#16 21.36 [echo] isSnapshot = true
#16 21.49
#16 21.49 init-title:
#16 21.49 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.49
#16 21.49 init-timestamp:
#16 21.49
#16 21.49 init:
#16 21.49
#16 21.49 copy-resources:
#16 21.49 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.49
#16 21.49 compile:
#16 21.79 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.88 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.89 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.30 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.71 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.73 [resolver:resolve] Resolving artifacts
#16 22.74 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.77 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.80 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.21 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.49 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.49 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.70 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.70 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 23.70 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 23.70 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 24.80 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.80 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.80 [javac] ^
#16 24.80 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.80 [javac] reader.setCoreIndex(index);
#16 24.80 [javac] ^
#16 25.00 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.00 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.00 [javac] ^
#16 25.00 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.00 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.00 [javac] ^
#16 25.30 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.30 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.30 [javac] ^
#16 25.30 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.30 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.30 [javac] ^
#16 25.39 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.39 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.39 [javac] 10 warnings
#16 25.39
#16 25.39 tests.jar:
#16 25.39 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.41 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 25.41 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 25.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 25.46 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.46 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.46
#16 25.46 jars:
#16 25.46
#16 25.46 copy-jars:
#16 25.46
#16 25.46 deps-formats-api:
#16 25.51 [echo] isSnapshot = true
#16 25.55
#16 25.55 install-pom:
#16 25.73 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.73 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.73 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.73
#16 25.73 jar-formats-api:
#16 25.82 [echo] isSnapshot = true
#16 25.95
#16 25.95 init-title:
#16 25.95 [echo] ----------=========== formats-api ===========----------
#16 25.95
#16 25.95 init-timestamp:
#16 25.95
#16 25.95 init:
#16 25.95
#16 25.95 copy-resources:
#16 25.95
#16 25.95 compile:
#16 26.08 [resolver:resolve] Resolving artifacts
#16 26.09
#16 26.09 formats-api.jar:
#16 26.11 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 26.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 26.12 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.12 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.12
#16 26.12 deps-turbojpeg:
#16 26.12
#16 26.12 jar-turbojpeg:
#16 26.20 [echo] isSnapshot = true
#16 26.33
#16 26.33 init-title:
#16 26.33 [echo] ----------=========== turbojpeg ===========----------
#16 26.33
#16 26.33 init-timestamp:
#16 26.33
#16 26.33 init:
#16 26.33
#16 26.33 copy-resources:
#16 26.33
#16 26.33 compile:
#16 26.34 [resolver:resolve] Resolving artifacts
#16 26.34
#16 26.34 jar:
#16 26.35 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 26.35 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 26.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 26.36 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.36 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.36
#16 26.36 deps-formats-bsd:
#16 26.36
#16 26.36 jar-formats-bsd:
#16 26.44 [echo] isSnapshot = true
#16 26.59
#16 26.59 init-title:
#16 26.59 [echo] ----------=========== formats-bsd ===========----------
#16 26.59
#16 26.59 init-timestamp:
#16 26.59
#16 26.59 init:
#16 26.59
#16 26.59 copy-resources:
#16 26.60
#16 26.60 compile:
#16 26.78 [resolver:resolve] Resolving artifacts
#16 26.80
#16 26.80 formats-bsd.jar:
#16 26.84 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.84 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.85 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.85 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.85 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.85
#16 26.85 deps-formats-gpl:
#16 26.85
#16 26.85 jar-formats-gpl:
#16 26.93 [echo] isSnapshot = true
#16 27.08
#16 27.08 init-title:
#16 27.08 [echo] ----------=========== formats-gpl ===========----------
#16 27.08
#16 27.08 init-timestamp:
#16 27.08
#16 27.08 init:
#16 27.08
#16 27.08 copy-resources:
#16 27.08
#16 27.08 compile:
#16 27.31 [resolver:resolve] Resolving artifacts
#16 27.33
#16 27.33 formats-gpl.jar:
#16 27.36 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.37 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.37 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.37
#16 27.37 deps-bio-formats-plugins:
#16 27.37
#16 27.37 jar-bio-formats-plugins:
#16 27.46 [echo] isSnapshot = true
#16 27.59
#16 27.59 init-title:
#16 27.59 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.59
#16 27.59 init-timestamp:
#16 27.59
#16 27.59 init:
#16 27.59
#16 27.59 copy-resources:
#16 27.59
#16 27.59 compile:
#16 27.83 [resolver:resolve] Resolving artifacts
#16 27.85
#16 27.85 bio-formats-plugins.jar:
#16 27.86 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.86 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.86 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.87 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.87
#16 27.87 deps-bio-formats-tools:
#16 27.87
#16 27.87 jar-bio-formats-tools:
#16 27.96 [echo] isSnapshot = true
#16 28.09
#16 28.09 init-title:
#16 28.09 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.09
#16 28.09 init-timestamp:
#16 28.09
#16 28.09 init:
#16 28.09
#16 28.09 copy-resources:
#16 28.09
#16 28.09 compile:
#16 28.35 [resolver:resolve] Resolving artifacts
#16 28.37
#16 28.37 bio-formats-tools.jar:
#16 28.37 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.38 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.38 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.38 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.38
#16 28.38 deps-tests:
#16 28.38
#16 28.38 jar-tests:
#16 28.47 [echo] isSnapshot = true
#16 28.61
#16 28.61 init-title:
#16 28.61 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.61
#16 28.61 init-timestamp:
#16 28.61
#16 28.61 init:
#16 28.61
#16 28.61 copy-resources:
#16 28.61
#16 28.61 compile:
#16 28.87 [resolver:resolve] Resolving artifacts
#16 28.88
#16 28.88 tests.jar:
#16 28.89 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.89 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.90 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.90 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.90
#16 28.90 jars:
#16 28.90
#16 28.90 tools:
#16 28.90 [echo] ----------=========== bioformats_package ===========----------
#16 28.99 [echo] isSnapshot = true
#16 29.18
#16 29.18 init-timestamp:
#16 29.18
#16 29.18 bundle:
#16 29.43 [resolver:resolve] Resolving artifacts
#16 29.44 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.48 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.50 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.53 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.54 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.61 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.69 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.70 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.01 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.10 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.92 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.16 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.48 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.22 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.35 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.75 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.82 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.93 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.10 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.62 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.63 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.83 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.84 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.85 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.03 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.04 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.06 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.06 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.10 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.56 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.70 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.82 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.41 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.46 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.46 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.47
#16 41.47 BUILD SUCCESSFUL
#16 41.47 Total time: 40 seconds
#16 DONE 43.1s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:de6166cac2237eefc993dfa5d224d999f0a0ff7551616c7a558f06ad91f0c94f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s
[33m1 warning found (use --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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