Skip to content

Changes

Summary

  1. merge master -Dorg -Ssuccess-only (details)
  2. Update component versions (details)
Commit 714ede5e83354716267d97297ed221c127aa61bf by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 635 dependabot[bot] 'Bump ome-common-java from `4604fff` to `d74b834`' (status: None)
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 633 dependabot[bot] 'Bump bioformats from `adf3c52` to `54cf1e8`'
  - PR 634 dependabot[bot] 'Bump bio-formats-documentation from `1dc4881` to `7256a78`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Excluded PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation' (label: exclude)
Already up to date.

Merged PRs:
  - PR 391 sbesson 'Migrate the command-line tools index to the users page'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane' (user: NicoKiaru)
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4164 melissalinkert 'Reduce DICOM write time'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'
  - PR 4215 melissalinkert 'Fix DICOM export in ImageJ'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'
  - PR 4220 melissalinkert 'Fix float casting when autoscaling int values to byte'
  - PR 4222 melissalinkert 'LIF: fix offset calculation for certain datasets with multiple unstitched files'
  - PR 4224 melissalinkert 'RCPNL: add data for objective ID 18112'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 40 atbest 'Implement Zstandard compression' (user: atbest)
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Updating 4604fff..d74b834
Previously merged:
  - PR 90 melissalinkert 'Fix string comparison'

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#179 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/179/)
The file was modified bio-formats-examples (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-mdbtools (diff)
The file was modified ome-common-java (diff)
The file was modified ome-metakit (diff)
The file was modified ome-jai (diff)
The file was modified .gitmodules (diff)
The file was modified ome-codecs (diff)
The file was modified ome-stubs (diff)
The file was modified ome-model (diff)
The file was modified ome-poi (diff)
The file was modified ZarrReader (diff)
The file was modified bioformats (diff)
Commit 93e668d4530927388f99ec1f3d35c7e9d392cf37 by snoopycrimecop
Update component versions
The file was modified bioformats (diff)
The file was modified ome-codecs (diff)
The file was modified ome-model (diff)
The file was modified ome-poi (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-documentation (diff)
The file was modified bio-formats-examples (diff)