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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar (774 kB at 5.8 MB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar (6.0 MB at 16 MB/s)
#14 308.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#14 308.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#14 308.6 Progress (1): 0/4.1 MB
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#14 309.3 Progress (1): 0.4/4.1 MB
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (4.1 MB at 1.4 MB/s)
#14 311.2 [[1;34mINFO[m]
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#14 311.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 311.2 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914604438
#14 311.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 311.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 311.2
#14 311.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 311.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 311.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 311.2 [[1;34mINFO[m] Copying 1 resource
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#14 311.3 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 311.3 [[1;34mINFO[m] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 313.8 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 313.8 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 313.8 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 313.8 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 313.8 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 313.8 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 314.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 314.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 314.1 [[1;34mINFO[m]
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#14 314.1 [[1;34mINFO[m] -------------------------------------------------------
#14 314.1 [[1;34mINFO[m] T E S T S
#14 314.1 [[1;34mINFO[m] -------------------------------------------------------
#14 314.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 315.6 2024-10-03 00:16:48,838 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5cad8b7d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.6 2024-10-03 00:16:48,841 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@11963225 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.7 2024-10-03 00:16:48,891 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@350b3a17 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.7 2024-10-03 00:16:48,891 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@6c2f1700 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.7 2024-10-03 00:16:48,940 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2e16b08d reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.7 2024-10-03 00:16:48,940 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5b989dc7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.8 2024-10-03 00:16:48,988 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3c4bc9fc reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.8 2024-10-03 00:16:48,988 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@60e949e1 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.8 2024-10-03 00:16:49,034 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7882c44a reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.8 2024-10-03 00:16:49,034 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5d28bcd5 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.9 2024-10-03 00:16:49,096 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@35e478f reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 315.9 2024-10-03 00:16:49,097 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@3d7cc3cb reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.9 2024-10-03 00:16:49,140 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@375b5b7f reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 315.9 2024-10-03 00:16:49,140 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1813f3e9 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 316.0 2024-10-03 00:16:49,177 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@773bd77b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 316.0 2024-10-03 00:16:49,177 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7808fb9 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 316.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.889 s - in [1mTestSuite[m
#14 316.5 [[1;34mINFO[m]
#14 316.5 [[1;34mINFO[m] Results:
#14 316.5 [[1;34mINFO[m]
#14 316.5 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 316.5 [[1;34mINFO[m]
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#14 316.5 [[1;34mINFO[m]
#14 316.5 [[1;34mINFO[m] -------------------------------------------------------
#14 316.5 [[1;34mINFO[m] T E S T S
#14 316.5 [[1;34mINFO[m] -------------------------------------------------------
#14 316.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 317.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.43 s - in [1mTestSuite[m
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#14 317.4 [[1;34mINFO[m]
#14 317.4 [[1;34mINFO[m] -------------------------------------------------------
#14 317.4 [[1;34mINFO[m] T E S T S
#14 317.4 [[1;34mINFO[m] -------------------------------------------------------
#14 317.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 318.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.408 s - in [1mTestSuite[m
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#14 318.3 [[1;34mINFO[m] Results:
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#14 318.3 [[1;34mINFO[m]
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#14 318.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 318.3 [[1;34mINFO[m]
#14 318.3 [[1;34mINFO[m] -------------------------------------------------------
#14 318.3 [[1;34mINFO[m] T E S T S
#14 318.3 [[1;34mINFO[m] -------------------------------------------------------
#14 318.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 318.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.41 s - in [1mTestSuite[m
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#14 319.2 [[1;34mINFO[m]
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#14 319.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar
#14 319.3 [[1;34mINFO[m]
#14 319.3 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
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#14 319.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 319.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 319.3 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914612509
#14 319.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 319.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 319.3
#14 319.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 319.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 319.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 319.3 [[1;34mINFO[m]
#14 319.3 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
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#14 319.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 319.4 [[1;34mINFO[m]
#14 319.4 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 319.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 319.4 [[1;34mINFO[m]
#14 319.4 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 319.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#14 319.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#14 319.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 319.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 319.4 [[1;34mINFO[m]
#14 319.4 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 319.4 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.0.0-SNAPSHOT [18/25][m
#14 319.4 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 319.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 319.5 Progress (1): 4.1/7.9 kB
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#14 319.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 12 MB/s)
#14 319.7 [[1;34mINFO[m]
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#14 319.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 319.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 319.7 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914612918
#14 319.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 319.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 319.7
#14 319.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 319.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 319.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 319.7 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
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#14 319.7 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
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#14 319.7 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 319.7 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 319.7 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 320.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 320.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 320.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 320.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 320.2 [[1;34mINFO[m]
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#14 320.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
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#14 320.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 320.2 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
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#14 320.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 320.4 [[1;34mINFO[m]
#14 320.4 [[1;34mINFO[m] -------------------------------------------------------
#14 320.4 [[1;34mINFO[m] T E S T S
#14 320.4 [[1;34mINFO[m] -------------------------------------------------------
#14 320.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 321.8 Warning: Data has too many channels for Colorized color mode
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#14 322.0 Warning: Data has too many channels for Colorized color mode
#14 322.1 Warning: Data has too many channels for Colorized color mode
#14 322.1 Warning: Data has too many channels for Colorized color mode
#14 322.1 Warning: Data has too many channels for Colorized color mode
#14 322.2 Warning: Data has too many channels for Composite color mode
#14 322.2 Warning: Data has too many channels for Composite color mode
#14 322.5 Warning: Data has too many channels for Composite color mode
#14 322.5 Warning: Data has too many channels for Composite color mode
#14 322.5 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.6 Warning: Data has too many channels for Composite color mode
#14 322.7 Warning: Data has too many channels for Composite color mode
#14 322.9 Warning: Data has too many channels for Composite color mode
#14 322.9 Warning: Data has too many channels for Composite color mode
#14 322.9 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.0 Warning: Data has too many channels for Composite color mode
#14 323.1 Warning: Data has too many channels for Composite color mode
#14 323.1 Warning: Data has too many channels for Composite color mode
#14 323.1 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.4 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.5 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 323.9 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.0 Warning: Data has too many channels for Composite color mode
#14 324.1 Warning: Data has too many channels for Custom color mode
#14 324.1 Warning: Data has too many channels for Custom color mode
#14 324.1 Warning: Data has too many channels for Custom color mode
#14 324.1 Warning: Data has too many channels for Custom color mode
#14 324.1 Warning: Data has too many channels for Custom color mode
#14 324.2 Warning: Data has too many channels for Custom color mode
#14 324.2 Warning: Data has too many channels for Custom color mode
#14 324.2 Warning: Data has too many channels for Custom color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.3 Warning: Data has too many channels for Default color mode
#14 324.4 Warning: Data has too many channels for Default color mode
#14 324.4 Warning: Data has too many channels for Default color mode
#14 324.4 Warning: Data has too many channels for Default color mode
#14 324.4 Warning: Data has too many channels for Default color mode
#14 324.5 Warning: Data has too many channels for Default color mode
#14 324.5 Warning: Data has too many channels for Default color mode
#14 324.5 Warning: Data has too many channels for Default color mode
#14 324.5 Warning: Data has too many channels for Default color mode
#14 324.6 Warning: Data has too many channels for Default color mode
#14 324.6 Warning: Data has too many channels for Default color mode
#14 324.6 Warning: Data has too many channels for Grayscale color mode
#14 324.6 Warning: Data has too many channels for Grayscale color mode
#14 324.7 Warning: Data has too many channels for Grayscale color mode
#14 324.7 Warning: Data has too many channels for Grayscale color mode
#14 324.7 Warning: Data has too many channels for Grayscale color mode
#14 324.7 Warning: Data has too many channels for Grayscale color mode
#14 324.8 Warning: Data has too many channels for Grayscale color mode
#14 324.8 Warning: Data has too many channels for Grayscale color mode
#14 324.8 Warning: Data has too many channels for Colorized color mode
#14 324.8 Warning: Data has too many channels for Colorized color mode
#14 324.9 Warning: Data has too many channels for Colorized color mode
#14 325.5 Warning: Data has too many channels for Default color mode
#14 325.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.164 s - in [1mTestSuite[m
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] Results:
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.0 [[1;34mINFO[m]
#14 326.0 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 326.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 326.0 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914619264
#14 326.0 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 326.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 326.0
#14 326.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 326.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 326.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 326.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#14 326.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 326.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 326.1 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.0.0-SNAPSHOT [19/25][m
#14 326.1 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 326.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 326.1 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914619336
#14 326.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 326.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 326.1
#14 326.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 326.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 326.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 326.1 [[1;34mINFO[m] Copying 0 resource
#14 326.1 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 326.1 [[1;34mINFO[m] Copying 0 resource
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#14 326.1 [[1;34mINFO[m]
#14 326.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 326.1 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 326.3 [[1;34mINFO[m]
#14 326.3 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.3 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 326.3 [[1;34mINFO[m] Copying 1 resource
#14 326.3 [[1;34mINFO[m]
#14 326.3 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.3 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 326.3 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 326.4 [[1;34mINFO[m]
#14 326.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 326.4 [[1;34mINFO[m]
#14 326.4 [[1;34mINFO[m] -------------------------------------------------------
#14 326.4 [[1;34mINFO[m] T E S T S
#14 326.4 [[1;34mINFO[m] -------------------------------------------------------
#14 326.6 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 391.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.648 s - in loci.formats.tools.[1mImageConverterTest[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] Results:
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 391.6 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914684803
#14 391.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 391.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 391.6
#14 391.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 391.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 391.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#14 391.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 391.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 391.6 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.0.0-SNAPSHOT [20/25][m
#14 391.6 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 391.6 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914684852
#14 391.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 391.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 391.6
#14 391.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 391.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 391.6 [[1;34mINFO[m]
#14 391.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 391.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 391.6 [[1;34mINFO[m] Storing buildNumber: 4bd8376b0975590496f8da746fa90970cb068692 at timestamp: 1727914684868
#14 391.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 391.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 391.7
#14 391.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 391.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 391.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 391.7 [[1;34mINFO[m]
#14 391.7 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m <<<[m
#14 391.7 [[1;34mINFO[m]
#14 391.7 [[1;34mINFO[m]
#14 391.7 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 391.7 [[1;34mINFO[m]
#14 391.7 [[1;34mINFO[m] [1m--- [0;32mmaven-assembly-plugin:3.1.0:single[m [1m(make-assembly)[m @ [36mbioformats_package[0;1m ---[m
#14 391.8 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 392.0 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 392.0 o 'gov.nih.imagej:imagej'
#14 392.0 o 'net.imagej:ij'
#14 392.0 o 'org.springframework:spring*'
#14 392.0 o 'aopalliance:aopalliance'
#14 392.0 o 'org.aspectj:aspectj*'
#14 392.0 o 'org.slf4j:slf4j-log4j12'
#14 392.0 o 'log4j:log4j'
#14 392.0 o 'org.testng:testng'
#14 392.0 o 'com.beust:jcommander'
#14 392.0 o 'org.beanshell:bsh'
#14 392.0 o 'edu.princeton.cup:java-cup'
#14 392.0 o 'org.apache.bcel:bcel'
#14 392.0 o 'regexp:regexp'
#14 392.0 o 'org.apache.ant:ant-trax'
#14 392.0 o 'edu.ucar:udunits'
#14 392.0 o 'javax.servlet:servlet-api'
#14 392.0
#14 392.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
#14 392.1 Progress (1): 4.1/11 kB
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Progress (1): 11 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom (11 kB at 398 kB/s)
#14 392.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
#14 392.1 Progress (1): 4.1/21 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom (21 kB at 844 kB/s)
#14 392.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
#14 392.1 Progress (1): 1.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom (1.1 kB at 44 kB/s)
#14 392.2 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 392.2 Progress (1): 4.1/5.2 kB
Progress (1): 5.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom (5.2 kB at 210 kB/s)
#14 392.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 392.2 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom (1.3 kB at 51 kB/s)
#14 392.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom
#14 392.2 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom (1.3 kB at 51 kB/s)
#14 392.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom
#14 392.3 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom (1.3 kB at 51 kB/s)
#14 392.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom
#14 392.3 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom (1.9 kB at 78 kB/s)
#14 392.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom
#14 392.3 Progress (1): 1.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom (1.5 kB at 62 kB/s)
#14 392.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom
#14 392.3 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom (1.3 kB at 51 kB/s)
#14 392.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom
#14 392.4 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom (1.3 kB at 54 kB/s)
#14 392.4 Downloading from central: https://repo.maven.apache.org/maven2
#14 392.4 [output clipped, log limit 2MiB reached]
#14 567.8 SLF4J: No SLF4J providers were found.
#14 567.8 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 567.8 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 568.6 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 568.6 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 568.6 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 568.6 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 579.6s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.708 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.727 [echo] isSnapshot = true
#16 1.848
#16 1.848 copy-jars:
#16 1.848
#16 1.848 deps-formats-api:
#16 1.941 [echo] isSnapshot = true
#16 1.999
#16 1.999 install-pom:
#16 2.196 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.252 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.256 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.258
#16 2.258 jar-formats-api:
#16 2.379 [echo] isSnapshot = true
#16 2.578
#16 2.578 init-title:
#16 2.578 [echo] ----------=========== formats-api ===========----------
#16 2.578
#16 2.578 init-timestamp:
#16 2.586
#16 2.586 init:
#16 2.586
#16 2.586 copy-resources:
#16 2.587 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.600 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.602
#16 2.602 compile:
#16 2.799 [resolver:resolve] Resolving artifacts
#16 2.829 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.068 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.068 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 3.068 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 3.068 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 3.669 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.669 [javac] import loci.common.ReflectedUniverse;
#16 3.669 [javac] ^
#16 3.969 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.969 [javac] int currentIndex = r.getCoreIndex();
#16 3.970 [javac] ^
#16 3.970 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.970 [javac] r.setCoreIndex(coreIndex);
#16 3.970 [javac] ^
#16 3.970 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.970 [javac] r.setCoreIndex(currentIndex);
#16 3.970 [javac] ^
#16 4.070 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.070 [javac] public void setCoreIndex(int no) {
#16 4.070 [javac] ^
#16 4.071 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.071 [javac] public int getCoreIndex() {
#16 4.071 [javac] ^
#16 4.071 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.071 [javac] public int coreIndexToSeries(int index)
#16 4.071 [javac] ^
#16 4.071 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.071 [javac] public int seriesToCoreIndex(int series)
#16 4.071 [javac] ^
#16 4.071 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.071 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.071 [javac] ^
#16 4.172 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.172 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.172 [javac] ^
#16 4.172 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.172 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.172 [javac] ^
#16 4.172 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.172 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.172 [javac] ^
#16 4.172 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.172 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.172 [javac] ^
#16 4.273 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 4.273 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 4.273 [javac] ^
#16 4.273 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.273 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.273 [javac] ^
#16 4.273 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.273 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.273 [javac] ^
#16 4.374 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.374 [javac] public void setCoreIndex(int no) {
#16 4.374 [javac] ^
#16 4.374 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.374 [javac] public int getCoreIndex() {
#16 4.374 [javac] ^
#16 4.374 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.374 [javac] public int coreIndexToSeries(int index) {
#16 4.374 [javac] ^
#16 4.374 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.374 [javac] public int seriesToCoreIndex(int series) {
#16 4.375 [javac] ^
#16 4.375 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.375 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.375 [javac] ^
#16 4.375 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.375 [javac] return getReader().getCoreMetadataList();
#16 4.375 [javac] ^
#16 4.375 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.375 [javac] return getReader().getCoreIndex();
#16 4.375 [javac] ^
#16 4.375 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.375 [javac] getReader().setCoreIndex(no);
#16 4.375 [javac] ^
#16 4.375 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.375 [javac] return getReader().seriesToCoreIndex(series);
#16 4.375 [javac] ^
#16 4.376 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.376 [javac] return getReader().coreIndexToSeries(index);
#16 4.376 [javac] ^
#16 4.476 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.476 [javac] public void setCoreIndex(int no) {
#16 4.476 [javac] ^
#16 4.476 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.476 [javac] public int getCoreIndex() {
#16 4.476 [javac] ^
#16 4.476 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.476 [javac] public int coreIndexToSeries(int index) {
#16 4.476 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.477 [javac] public int seriesToCoreIndex(int series) {
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.477 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.477 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.477 [javac] return reader.getCoreIndex();
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.477 [javac] reader.setCoreIndex(no);
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.477 [javac] return reader.seriesToCoreIndex(series);
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.477 [javac] return reader.coreIndexToSeries(index);
#16 4.477 [javac] ^
#16 4.678 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.678 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.678 [javac] 40 warnings
#16 4.697
#16 4.697 formats-api.jar:
#16 4.698 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.725 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.758 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.762 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.778 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.781 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.783 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.783
#16 4.783 deps-turbojpeg:
#16 4.783
#16 4.783 jar-turbojpeg:
#16 4.897 [echo] isSnapshot = true
#16 5.071
#16 5.071 init-title:
#16 5.071 [echo] ----------=========== turbojpeg ===========----------
#16 5.071
#16 5.071 init-timestamp:
#16 5.071
#16 5.071 init:
#16 5.071
#16 5.071 copy-resources:
#16 5.072 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.073
#16 5.073 compile:
#16 5.084 [resolver:resolve] Resolving artifacts
#16 5.087 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.290 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.290 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.290 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.290 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 5.991 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.991 [javac] protected void finalize() throws Throwable {
#16 5.991 [javac] ^
#16 5.991 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.991 [javac] super.finalize();
#16 5.991 [javac] ^
#16 5.991 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.991 [javac] protected void finalize() throws Throwable {
#16 5.991 [javac] ^
#16 5.991 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.991 [javac] super.finalize();
#16 5.992 [javac] ^
#16 6.030 [javac] 8 warnings
#16 6.031
#16 6.031 jar:
#16 6.034 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.219 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.227 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.236 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.238 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.246 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.248
#16 6.248 deps-formats-bsd:
#16 6.248
#16 6.248 jar-formats-bsd:
#16 6.378 [echo] isSnapshot = true
#16 6.524
#16 6.524 init-title:
#16 6.524 [echo] ----------=========== formats-bsd ===========----------
#16 6.524
#16 6.524 init-timestamp:
#16 6.524
#16 6.524 init:
#16 6.525
#16 6.525 copy-resources:
#16 6.525 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.528 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.528
#16 6.528 compile:
#16 6.742 [resolver:resolve] Resolving artifacts
#16 6.770 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.979 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.979 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 6.979 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 6.979 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 8.081 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.081 [javac] import loci.common.ReflectedUniverse;
#16 8.081 [javac] ^
#16 8.481 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.481 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.481 [javac] ^
#16 8.481 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.481 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.481 [javac] ^
#16 8.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.581 [javac] int n = reader.getCoreMetadataList().size();
#16 8.581 [javac] ^
#16 8.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.581 [javac] reader.setCoreIndex(coreIndex);
#16 8.581 [javac] ^
#16 8.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.581 [javac] int n = reader.getCoreMetadataList().size();
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] int n = reader.getCoreMetadataList().size();
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.582 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] int n = reader.getCoreMetadataList().size();
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.582 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] int n = reader.getCoreMetadataList().size();
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.582 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.582 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.582 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.582 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.582 [javac] ^
#16 8.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.583 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.583 [javac] ^
#16 8.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.583 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.583 [javac] ^
#16 8.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.583 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.583 [javac] ^
#16 8.683 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.683 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.683 [javac] ^
#16 8.683 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.683 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 8.683 [javac] ^
#16 8.683 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.683 [javac] URL url = new URL(urlPath);
#16 8.683 [javac] ^
#16 8.784 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.784 [javac] BitWriter out = new BitWriter();
#16 8.784 [javac] ^
#16 8.784 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.784 [javac] BitWriter out = new BitWriter();
#16 8.784 [javac] ^
#16 8.984 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.984 [javac] return new Double(v);
#16 8.984 [javac] ^
#16 9.585 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.585 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.585 [javac] ^
#16 9.585 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.585 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.585 [javac] ^
#16 9.585 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.585 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.585 [javac] ^
#16 9.685 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.685 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.685 [javac] ^
#16 9.885 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.885 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.885 [javac] ^
#16 9.886 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.886 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.886 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.09 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.09 [javac] protected ReflectedUniverse r;
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.09 [javac] r = new ReflectedUniverse();
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.09 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.09 [javac] ^
#16 10.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.09 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.09 [javac] ^
#16 10.19 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.19 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.19 [javac] ^
#16 10.19 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.19 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.19 [javac] ^
#16 10.19 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.19 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.19 [javac] ^
#16 10.19 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.19 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.19 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.29 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.29 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.29 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.29 [javac] ^
#16 10.35 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.35 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.35 [javac] 55 warnings
#16 10.35
#16 10.35 formats-bsd.jar:
#16 10.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.48 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.50 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.50 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.50
#16 10.50 deps-formats-gpl:
#16 10.50
#16 10.50 jar-formats-gpl:
#16 10.60 [echo] isSnapshot = true
#16 10.74
#16 10.74 init-title:
#16 10.74 [echo] ----------=========== formats-gpl ===========----------
#16 10.74
#16 10.74 init-timestamp:
#16 10.74
#16 10.74 init:
#16 10.74
#16 10.74 copy-resources:
#16 10.74 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.74 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.75
#16 10.75 compile:
#16 10.98 [resolver:resolve] Resolving artifacts
#16 11.17 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.17 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.49 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.49 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.52 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.52 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.54 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.75 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 11.75 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 11.75 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 11.75 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 12.96 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.96 [javac] import loci.formats.codec.BitWriter;
#16 12.96 [javac] ^
#16 12.96 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.96 [javac] import loci.formats.codec.BitWriter;
#16 12.96 [javac] ^
#16 14.96 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.96 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.96 [javac] ^
#16 14.96 [javac] cast to Object for a varargs call
#16 14.96 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.06 [javac] BitWriter bits = null;
#16 15.06 [javac] ^
#16 15.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.06 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.06 [javac] ^
#16 15.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.36 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.36 [javac] ^
#16 15.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.76 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.76 [javac] ^
#16 15.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.76 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.76 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.05 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05 [javac] String groupName = group.getName();
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.05 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05 [javac] String attributeName = attribute.getName();
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05 [javac] String variableName = variable.getName();
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.05 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.05 [javac] ^
#16 16.05 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.05 [javac] 19 warnings
#16 16.05
#16 16.05 formats-gpl.jar:
#16 16.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.20 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.25 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.25 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.25
#16 16.25 deps-bio-formats-plugins:
#16 16.26
#16 16.26 jar-bio-formats-plugins:
#16 16.35 [echo] isSnapshot = true
#16 16.48
#16 16.48 init-title:
#16 16.48 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.48
#16 16.48 init-timestamp:
#16 16.48
#16 16.48 init:
#16 16.48
#16 16.48 copy-resources:
#16 16.48 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.48 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.49
#16 16.49 compile:
#16 16.74 [resolver:resolve] Resolving artifacts
#16 16.75 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.96 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 16.96 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 16.96 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 17.06 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 17.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.86 [javac] import loci.common.ReflectedUniverse;
#16 17.86 [javac] ^
#16 17.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.86 [javac] import loci.common.ReflectedUniverse;
#16 17.86 [javac] ^
#16 18.26 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.26 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.26 [javac] ^
#16 18.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.36 [javac] URL url = new URL(urlPath);
#16 18.36 [javac] ^
#16 18.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.46 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.46 [javac] ^
#16 18.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.46 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.46 [javac] ^
#16 18.56 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.56 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.56 [javac] ^
#16 18.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.57 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.57 [javac] ^
#16 18.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.77 [javac] url = new URL(path);
#16 18.77 [javac] ^
#16 18.97 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.97 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.97 [javac] 13 warnings
#16 18.99
#16 18.99 bio-formats-plugins.jar:
#16 18.99 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.03 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.04 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.04 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.04
#16 19.04 deps-bio-formats-tools:
#16 19.04
#16 19.04 jar-bio-formats-tools:
#16 19.13 [echo] isSnapshot = true
#16 19.26
#16 19.26 init-title:
#16 19.26 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.26
#16 19.26 init-timestamp:
#16 19.26
#16 19.26 init:
#16 19.26
#16 19.26 copy-resources:
#16 19.26 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.26
#16 19.26 compile:
#16 19.49 [resolver:resolve] Resolving artifacts
#16 19.52 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.73 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.73 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 19.73 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 19.73 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 20.81 [javac] 4 warnings
#16 20.81
#16 20.81 bio-formats-tools.jar:
#16 20.81 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.82 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.87 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.87 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.87
#16 20.87 deps-tests:
#16 20.87
#16 20.87 jar-tests:
#16 20.96 [echo] isSnapshot = true
#16 21.09
#16 21.09 init-title:
#16 21.09 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.09
#16 21.09 init-timestamp:
#16 21.09
#16 21.09 init:
#16 21.09
#16 21.09 copy-resources:
#16 21.09 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.09
#16 21.09 compile:
#16 21.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.47 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.88 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.36 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.39 [resolver:resolve] Resolving artifacts
#16 22.40 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.43 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.44 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.84 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.11 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.12 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.32 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.32 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 23.32 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 23.32 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 24.42 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.42 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.42 [javac] ^
#16 24.42 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.42 [javac] reader.setCoreIndex(index);
#16 24.42 [javac] ^
#16 24.72 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.72 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.72 [javac] ^
#16 24.72 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.72 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.72 [javac] ^
#16 25.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.02 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.02 [javac] ^
#16 25.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.02 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.02 [javac] ^
#16 25.02 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.02 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.02 [javac] 10 warnings
#16 25.06
#16 25.06 tests.jar:
#16 25.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.07 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 25.08 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 25.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 25.08 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.08 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.08
#16 25.08 jars:
#16 25.08
#16 25.08 copy-jars:
#16 25.08
#16 25.08 deps-formats-api:
#16 25.13 [echo] isSnapshot = true
#16 25.17
#16 25.17 install-pom:
#16 25.30 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.34 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.35 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.35
#16 25.35 jar-formats-api:
#16 25.43 [echo] isSnapshot = true
#16 25.56
#16 25.56 init-title:
#16 25.56 [echo] ----------=========== formats-api ===========----------
#16 25.56
#16 25.56 init-timestamp:
#16 25.56
#16 25.56 init:
#16 25.56
#16 25.56 copy-resources:
#16 25.56
#16 25.56 compile:
#16 25.69 [resolver:resolve] Resolving artifacts
#16 25.70
#16 25.70 formats-api.jar:
#16 25.71 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.71 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.72 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.72 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.72
#16 25.72 deps-turbojpeg:
#16 25.72
#16 25.72 jar-turbojpeg:
#16 25.80 [echo] isSnapshot = true
#16 25.92
#16 25.92 init-title:
#16 25.92 [echo] ----------=========== turbojpeg ===========----------
#16 25.92
#16 25.92 init-timestamp:
#16 25.92
#16 25.92 init:
#16 25.92
#16 25.92 copy-resources:
#16 25.92
#16 25.92 compile:
#16 25.93 [resolver:resolve] Resolving artifacts
#16 25.93
#16 25.93 jar:
#16 25.94 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 25.94 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 25.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 25.95 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.95 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.95
#16 25.95 deps-formats-bsd:
#16 25.95
#16 25.95 jar-formats-bsd:
#16 26.03 [echo] isSnapshot = true
#16 26.16
#16 26.16 init-title:
#16 26.16 [echo] ----------=========== formats-bsd ===========----------
#16 26.16
#16 26.16 init-timestamp:
#16 26.16
#16 26.16 init:
#16 26.16
#16 26.16 copy-resources:
#16 26.16
#16 26.16 compile:
#16 26.35 [resolver:resolve] Resolving artifacts
#16 26.36
#16 26.36 formats-bsd.jar:
#16 26.40 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.40 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.40 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.40 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.40 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.41
#16 26.41 deps-formats-gpl:
#16 26.41
#16 26.41 jar-formats-gpl:
#16 26.50 [echo] isSnapshot = true
#16 26.63
#16 26.63 init-title:
#16 26.63 [echo] ----------=========== formats-gpl ===========----------
#16 26.63
#16 26.63 init-timestamp:
#16 26.63
#16 26.63 init:
#16 26.63
#16 26.63 copy-resources:
#16 26.63
#16 26.63 compile:
#16 26.85 [resolver:resolve] Resolving artifacts
#16 26.86
#16 26.86 formats-gpl.jar:
#16 26.90 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 26.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 26.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 26.91 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.91 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.91
#16 26.91 deps-bio-formats-plugins:
#16 26.91
#16 26.91 jar-bio-formats-plugins:
#16 26.99 [echo] isSnapshot = true
#16 27.12
#16 27.12 init-title:
#16 27.12 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.12
#16 27.12 init-timestamp:
#16 27.12
#16 27.12 init:
#16 27.12
#16 27.12 copy-resources:
#16 27.12
#16 27.12 compile:
#16 27.35 [resolver:resolve] Resolving artifacts
#16 27.37
#16 27.37 bio-formats-plugins.jar:
#16 27.38 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.38 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.39 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.39 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.39
#16 27.39 deps-bio-formats-tools:
#16 27.39
#16 27.39 jar-bio-formats-tools:
#16 27.51 [echo] isSnapshot = true
#16 27.63
#16 27.63 init-title:
#16 27.64 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.64
#16 27.64 init-timestamp:
#16 27.64
#16 27.64 init:
#16 27.64
#16 27.64 copy-resources:
#16 27.64
#16 27.64 compile:
#16 27.86 [resolver:resolve] Resolving artifacts
#16 27.87
#16 27.87 bio-formats-tools.jar:
#16 27.88 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 27.88 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 27.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 27.88 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.89 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.89
#16 27.89 deps-tests:
#16 27.89
#16 27.89 jar-tests:
#16 27.97 [echo] isSnapshot = true
#16 28.10
#16 28.10 init-title:
#16 28.10 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.10
#16 28.10 init-timestamp:
#16 28.10
#16 28.10 init:
#16 28.10
#16 28.10 copy-resources:
#16 28.10
#16 28.10 compile:
#16 28.33 [resolver:resolve] Resolving artifacts
#16 28.34
#16 28.34 tests.jar:
#16 28.35 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.35 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.35 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.36 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.36
#16 28.36 jars:
#16 28.36
#16 28.36 tools:
#16 28.36 [echo] ----------=========== bioformats_package ===========----------
#16 28.44 [echo] isSnapshot = true
#16 28.62
#16 28.62 init-timestamp:
#16 28.62
#16 28.62 bundle:
#16 28.84 [resolver:resolve] Resolving artifacts
#16 28.85 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.90 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.93 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.94 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.02 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.07 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.31 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.36 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.38 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.44 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.45 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.46 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.46 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.14 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.23 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.24 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.30 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.64 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.72 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.74 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.42 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.44 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.94 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.54 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.74 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.90 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.93 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.97 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.38 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.49 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.87 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.48 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.01 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 40.02 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 40.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 40.06 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.06 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.06
#16 40.06 BUILD SUCCESSFUL
#16 40.06 Total time: 39 seconds
#16 DONE 43.4s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:167c23ce234e2fcc952a57ed67859d080da64e0ddfec3895ed08d3d17a2bf212 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.2s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS