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#14 376.1 Progress (4): 388/435 kB | 290 kB | 114/154 kB | 8.2/632 kB
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#14 376.1 Progress (3): 435 kB | 154 kB | 143/632 kB
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#14 376.2 Progress (4): 392 kB | 208 kB | 127/571 kB | 47 kB
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#14 376.2 Progress (4): 392 kB | 208 kB | 131/571 kB | 47 kB
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#14 376.2 Progress (3): 392 kB | 208 kB | 274/571 kB
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#14 376.2 Progress (3): 392 kB | 208 kB | 279/571 kB
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#14 376.2 Progress (2): 208 kB | 365/571 kB
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#14 376.2 Progress (2): 208 kB | 369/571 kB
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#14 376.2 Progress (1): 471/571 kB
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#14 376.2 Progress (2): 471/571 kB | 8.2/19 kB
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#14 376.2 Progress (4): 571 kB | 28 kB | 22 kB | 20/153 kB
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#14 376.2 Progress (3): 28 kB | 22 kB | 61/153 kB
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#14 376.2 Progress (2): 22 kB | 150/153 kB
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#14 376.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 295 kB/s)
#14 376.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
#14 376.5 Progress (1): 2.6 kB
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#14 376.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
#14 376.5 Progress (1): 2.2 kB
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#14 376.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.13.0/maven-scm-providers-1.13.0.pom
#14 376.5 Progress (1): 3.6 kB
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#14 376.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.13.0/maven-scm-1.13.0.pom
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#14 376.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar
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#14 376.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar (72 kB at 2.1 MB/s)
#14 376.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.13.0/maven-scm-api-1.13.0.jar (112 kB at 3.2 MB/s)
#14 376.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.jar (262 kB at 6.6 MB/s)
#14 376.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.pom
#14 376.7 Progress (1): 2.2 kB
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#14 376.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.13.0/maven-scm-managers-1.13.0.pom
#14 376.7 Progress (1): 1.5 kB
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#14 376.8 Downloading from central: https://repo.maven.apache.org/maven2/junit/junit/4.13.1/junit-4.13.1.pom
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#14 376.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.jar
#14 376.8 Downloading from central: https://repo.maven.apache.org/maven2/junit/junit/4.13.1/junit-4.13.1.jar
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#14 376.9 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.pom
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#14 376.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.pom
#14 376.9 Progress (1): 1.6 kB
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#14 376.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.3/maven-scm-1.3.pom
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#14 376.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.pom
#14 376.9 Progress (1): 2.1 kB
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#14 377.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.3/maven-scm-managers-1.3.pom
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#14 377.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-container-default/1.5.4/plexus-container-default-1.5.4.pom
#14 377.0 Progress (1): 2.8 kB
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#14 377.0 [output clipped, log limit 2MiB reached]
#14 480.7 SLF4J: No SLF4J providers were found.
#14 480.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 480.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 492.6s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.533 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.043 [echo] isSnapshot = true
#16 1.157
#16 1.157 copy-jars:
#16 1.158
#16 1.158 deps-formats-api:
#16 1.245 [echo] isSnapshot = true
#16 1.305
#16 1.305 install-pom:
#16 1.498 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.507 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.511 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.513
#16 1.513 jar-formats-api:
#16 1.632 [echo] isSnapshot = true
#16 1.822
#16 1.822 init-title:
#16 1.822 [echo] ----------=========== formats-api ===========----------
#16 1.822
#16 1.822 init-timestamp:
#16 1.828
#16 1.828 init:
#16 1.828
#16 1.828 copy-resources:
#16 1.829 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.843 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.845
#16 1.845 compile:
#16 2.037 [resolver:resolve] Resolving artifacts
#16 2.065 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.334 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.935 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.935 [javac] import loci.common.ReflectedUniverse;
#16 2.935 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.135 [javac] int currentIndex = r.getCoreIndex();
#16 3.136 [javac] ^
#16 3.136 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.136 [javac] r.setCoreIndex(coreIndex);
#16 3.136 [javac] ^
#16 3.136 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.136 [javac] r.setCoreIndex(currentIndex);
#16 3.136 [javac] ^
#16 3.236 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.236 [javac] public void setCoreIndex(int no) {
#16 3.236 [javac] ^
#16 3.236 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.236 [javac] public int getCoreIndex() {
#16 3.236 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.237 [javac] public int coreIndexToSeries(int index)
#16 3.237 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.237 [javac] public int seriesToCoreIndex(int series)
#16 3.237 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.237 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.237 [javac] ^
#16 3.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.338 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.338 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.338 [javac] ^
#16 3.438 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.438 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.438 [javac] ^
#16 3.439 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.439 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.439 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.542 [javac] public void setCoreIndex(int no) {
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.542 [javac] public int getCoreIndex() {
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.542 [javac] public int coreIndexToSeries(int index) {
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.542 [javac] public int seriesToCoreIndex(int series) {
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.542 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.542 [javac] return getReader().getCoreMetadataList();
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.542 [javac] return getReader().getCoreIndex();
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.542 [javac] getReader().setCoreIndex(no);
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.542 [javac] return getReader().seriesToCoreIndex(series);
#16 3.542 [javac] ^
#16 3.542 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.542 [javac] return getReader().coreIndexToSeries(index);
#16 3.542 [javac] ^
#16 3.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.642 [javac] public void setCoreIndex(int no) {
#16 3.642 [javac] ^
#16 3.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.642 [javac] public int getCoreIndex() {
#16 3.642 [javac] ^
#16 3.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.642 [javac] public int coreIndexToSeries(int index) {
#16 3.642 [javac] ^
#16 3.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.642 [javac] public int seriesToCoreIndex(int series) {
#16 3.642 [javac] ^
#16 3.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.643 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.643 [javac] ^
#16 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.643 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.643 [javac] ^
#16 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.643 [javac] return reader.getCoreIndex();
#16 3.643 [javac] ^
#16 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.643 [javac] reader.setCoreIndex(no);
#16 3.643 [javac] ^
#16 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.643 [javac] return reader.seriesToCoreIndex(series);
#16 3.643 [javac] ^
#16 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.643 [javac] return reader.coreIndexToSeries(index);
#16 3.643 [javac] ^
#16 3.844 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.844 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.844 [javac] 36 warnings
#16 3.858
#16 3.858 formats-api.jar:
#16 3.858 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.882 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.915 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.919 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.974 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.976 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.978 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.980
#16 3.980 deps-turbojpeg:
#16 3.980
#16 3.980 jar-turbojpeg:
#16 4.087 [echo] isSnapshot = true
#16 4.265
#16 4.265 init-title:
#16 4.265 [echo] ----------=========== turbojpeg ===========----------
#16 4.265
#16 4.265 init-timestamp:
#16 4.265
#16 4.265 init:
#16 4.265
#16 4.265 copy-resources:
#16 4.266 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.267
#16 4.267 compile:
#16 4.278 [resolver:resolve] Resolving artifacts
#16 4.282 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.485 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.178 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.178 [javac] protected void finalize() throws Throwable {
#16 5.178 [javac] ^
#16 5.178 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.178 [javac] super.finalize();
#16 5.178 [javac] ^
#16 5.178 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.178 [javac] protected void finalize() throws Throwable {
#16 5.178 [javac] ^
#16 5.178 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.178 [javac] super.finalize();
#16 5.178 [javac] ^
#16 5.178 [javac] 5 warnings
#16 5.179
#16 5.179 jar:
#16 5.184 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.368 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.376 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.379 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.381 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.385 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.386
#16 5.386 deps-formats-bsd:
#16 5.386
#16 5.386 jar-formats-bsd:
#16 5.491 [echo] isSnapshot = true
#16 5.648
#16 5.648 init-title:
#16 5.648 [echo] ----------=========== formats-bsd ===========----------
#16 5.648
#16 5.648 init-timestamp:
#16 5.648
#16 5.648 init:
#16 5.648
#16 5.648 copy-resources:
#16 5.649 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.652 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.653
#16 5.653 compile:
#16 5.872 [resolver:resolve] Resolving artifacts
#16 5.900 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.109 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.210 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.210 [javac] import loci.common.ReflectedUniverse;
#16 7.210 [javac] ^
#16 7.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.610 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.610 [javac] ^
#16 7.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.610 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.610 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.611 [javac] int n = reader.getCoreMetadataList().size();
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.611 [javac] reader.setCoreIndex(coreIndex);
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.611 [javac] int n = reader.getCoreMetadataList().size();
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.611 [javac] int n = reader.getCoreMetadataList().size();
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.611 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.611 [javac] int n = reader.getCoreMetadataList().size();
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.611 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.611 [javac] int n = reader.getCoreMetadataList().size();
#16 7.611 [javac] ^
#16 7.611 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.612 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.612 [javac] ^
#16 7.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.612 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.612 [javac] ^
#16 7.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.612 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.612 [javac] ^
#16 7.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.612 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.612 [javac] ^
#16 7.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.612 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.612 [javac] ^
#16 7.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.612 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.612 [javac] ^
#16 7.712 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.712 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.712 [javac] ^
#16 7.712 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.712 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.712 [javac] ^
#16 7.713 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.713 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.713 [javac] ^
#16 7.813 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.813 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.813 [javac] ^
#16 7.913 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.913 [javac] BitWriter out = new BitWriter();
#16 7.913 [javac] ^
#16 7.913 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.913 [javac] BitWriter out = new BitWriter();
#16 7.913 [javac] ^
#16 8.014 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.014 [javac] return new Double(v);
#16 8.014 [javac] ^
#16 8.715 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.715 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.715 [javac] ^
#16 8.715 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.715 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.715 [javac] ^
#16 8.715 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [deprecation] Double(double) in Double has been deprecated
#16 8.715 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.715 [javac] ^
#16 8.815 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 8.815 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.815 [javac] ^
#16 9.016 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.016 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.016 [javac] ^
#16 9.016 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.016 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.016 [javac] ^
#16 9.216 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.216 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.216 [javac] ^
#16 9.216 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.216 [javac] protected ReflectedUniverse r;
#16 9.216 [javac] ^
#16 9.216 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.216 [javac] r = new ReflectedUniverse();
#16 9.216 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.217 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.217 [javac] ^
#16 9.217 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.217 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.217 [javac] ^
#16 9.218 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.218 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.218 [javac] ^
#16 9.318 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.318 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.318 [javac] ^
#16 9.318 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 9.318 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.318 [javac] ^
#16 9.318 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.318 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.318 [javac] ^
#16 9.318 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 9.318 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.318 [javac] ^
#16 9.419 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.419 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.419 [javac] ^
#16 9.419 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.419 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.419 [javac] ^
#16 9.419 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.419 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.419 [javac] ^
#16 9.419 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.419 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.419 [javac] 50 warnings
#16 9.463
#16 9.463 formats-bsd.jar:
#16 9.472 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.583 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.587 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.590 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.591 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.594 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.594
#16 9.594 deps-formats-gpl:
#16 9.594
#16 9.594 jar-formats-gpl:
#16 9.694 [echo] isSnapshot = true
#16 9.860
#16 9.860 init-title:
#16 9.860 [echo] ----------=========== formats-gpl ===========----------
#16 9.860
#16 9.860 init-timestamp:
#16 9.861
#16 9.861 init:
#16 9.861
#16 9.861 copy-resources:
#16 9.861 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.863 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.864
#16 9.864 compile:
#16 10.31 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.59 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.59 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.60 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.61 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.63 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.64 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.65 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.69 [resolver:resolve] Resolving artifacts
#16 10.70 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.70 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.74 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.74 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.76 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.76 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.78 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.08 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.28 [javac] import loci.formats.codec.BitWriter;
#16 12.28 [javac] ^
#16 12.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.38 [javac] import loci.formats.codec.BitWriter;
#16 12.38 [javac] ^
#16 14.39 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.39 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.39 [javac] ^
#16 14.39 [javac] cast to Object for a varargs call
#16 14.39 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.49 [javac] BitWriter bits = null;
#16 14.49 [javac] ^
#16 14.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.49 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.49 [javac] ^
#16 14.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.79 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.79 [javac] ^
#16 15.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.19 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.19 [javac] ^
#16 15.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.19 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.19 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.49 [javac] Variable variable = group.findVariable(variableName);
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.49 [javac] Variable variable = group.findVariable(variableName);
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.49 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.49 [javac] String groupName = group.getName();
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.49 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.49 [javac] String variableName = variable.getName();
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.49 [javac] Group nextParent = parent.findGroup(token);
#16 15.49 [javac] ^
#16 15.49 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.49 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.49 [javac] 16 warnings
#16 15.49
#16 15.49 formats-gpl.jar:
#16 15.50 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.63 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 15.63 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 15.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 15.64 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 15.64 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.64
#16 15.64 deps-bio-formats-plugins:
#16 15.64
#16 15.64 jar-bio-formats-plugins:
#16 15.73 [echo] isSnapshot = true
#16 15.88
#16 15.88 init-title:
#16 15.88 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.88
#16 15.88 init-timestamp:
#16 15.88
#16 15.88 init:
#16 15.88
#16 15.88 copy-resources:
#16 15.88 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.88 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.89
#16 15.89 compile:
#16 16.13 [resolver:resolve] Resolving artifacts
#16 16.15 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.46 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.26 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.26 [javac] import loci.common.ReflectedUniverse;
#16 17.26 [javac] ^
#16 17.26 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.26 [javac] import loci.common.ReflectedUniverse;
#16 17.26 [javac] ^
#16 17.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.66 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.66 [javac] ^
#16 17.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.86 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.86 [javac] ^
#16 17.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.86 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.86 [javac] ^
#16 17.96 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.96 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.96 [javac] ^
#16 17.96 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.96 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.96 [javac] ^
#16 18.36 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.36 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.36 [javac] 8 warnings
#16 18.41
#16 18.41 bio-formats-plugins.jar:
#16 18.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.45 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.45 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.45 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.45 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.45
#16 18.45 deps-bio-formats-tools:
#16 18.45
#16 18.45 jar-bio-formats-tools:
#16 18.55 [echo] isSnapshot = true
#16 18.69
#16 18.69 init-title:
#16 18.69 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.69
#16 18.69 init-timestamp:
#16 18.69
#16 18.69 init:
#16 18.69
#16 18.69 copy-resources:
#16 18.70 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.70
#16 18.70 compile:
#16 18.96 [resolver:resolve] Resolving artifacts
#16 18.97 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.28 [javac] 1 warning
#16 20.28
#16 20.28 bio-formats-tools.jar:
#16 20.28 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.29 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.30 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.30 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.30 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.30
#16 20.30 deps-tests:
#16 20.30
#16 20.30 jar-tests:
#16 20.40 [echo] isSnapshot = true
#16 20.56
#16 20.56 init-title:
#16 20.56 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.56
#16 20.56 init-timestamp:
#16 20.56
#16 20.56 init:
#16 20.56
#16 20.56 copy-resources:
#16 20.56 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.56
#16 20.56 compile:
#16 20.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.98 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.99 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.41 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.85 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 21.86 [resolver:resolve] Resolving artifacts
#16 21.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.92 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.93 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.33 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.69 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.70 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.00 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.01 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.01 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.01 [javac] ^
#16 24.01 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.01 [javac] reader.setCoreIndex(index);
#16 24.01 [javac] ^
#16 24.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.21 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.21 [javac] ^
#16 24.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.21 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.21 [javac] ^
#16 24.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.41 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.41 [javac] ^
#16 24.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.41 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.41 [javac] ^
#16 24.51 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.51 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.51 [javac] 7 warnings
#16 24.54
#16 24.54 tests.jar:
#16 24.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.55 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 24.56 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.56 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.56 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.56
#16 24.56 jars:
#16 24.56
#16 24.56 copy-jars:
#16 24.56
#16 24.56 deps-formats-api:
#16 24.61 [echo] isSnapshot = true
#16 24.66
#16 24.66 install-pom:
#16 24.81 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 24.82 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.82 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.82
#16 24.82 jar-formats-api:
#16 24.91 [echo] isSnapshot = true
#16 25.11
#16 25.11 init-title:
#16 25.11 [echo] ----------=========== formats-api ===========----------
#16 25.11
#16 25.11 init-timestamp:
#16 25.11
#16 25.11 init:
#16 25.11
#16 25.11 copy-resources:
#16 25.11
#16 25.11 compile:
#16 25.26 [resolver:resolve] Resolving artifacts
#16 25.27
#16 25.27 formats-api.jar:
#16 25.29 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.29 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.29 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.30 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.30
#16 25.30 deps-turbojpeg:
#16 25.30
#16 25.30 jar-turbojpeg:
#16 25.39 [echo] isSnapshot = true
#16 25.54
#16 25.54 init-title:
#16 25.54 [echo] ----------=========== turbojpeg ===========----------
#16 25.54
#16 25.54 init-timestamp:
#16 25.54
#16 25.54 init:
#16 25.54
#16 25.54 copy-resources:
#16 25.54
#16 25.54 compile:
#16 25.55 [resolver:resolve] Resolving artifacts
#16 25.55
#16 25.55 jar:
#16 25.56 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.57 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.57 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.57 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.57
#16 25.57 deps-formats-bsd:
#16 25.57
#16 25.57 jar-formats-bsd:
#16 25.66 [echo] isSnapshot = true
#16 25.82
#16 25.82 init-title:
#16 25.82 [echo] ----------=========== formats-bsd ===========----------
#16 25.82
#16 25.82 init-timestamp:
#16 25.82
#16 25.82 init:
#16 25.82
#16 25.82 copy-resources:
#16 25.82
#16 25.82 compile:
#16 26.03 [resolver:resolve] Resolving artifacts
#16 26.05
#16 26.05 formats-bsd.jar:
#16 26.08 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 26.09 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 26.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 26.09 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.09 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.09
#16 26.09 deps-formats-gpl:
#16 26.09
#16 26.09 jar-formats-gpl:
#16 26.18 [echo] isSnapshot = true
#16 26.33
#16 26.33 init-title:
#16 26.33 [echo] ----------=========== formats-gpl ===========----------
#16 26.33
#16 26.33 init-timestamp:
#16 26.33
#16 26.33 init:
#16 26.33
#16 26.33 copy-resources:
#16 26.33
#16 26.33 compile:
#16 26.57 [resolver:resolve] Resolving artifacts
#16 26.59
#16 26.59 formats-gpl.jar:
#16 26.62 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.63 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.63 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.63 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.63
#16 26.63 deps-bio-formats-plugins:
#16 26.63
#16 26.63 jar-bio-formats-plugins:
#16 26.72 [echo] isSnapshot = true
#16 26.86
#16 26.86 init-title:
#16 26.86 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.86
#16 26.86 init-timestamp:
#16 26.86
#16 26.86 init:
#16 26.86
#16 26.86 copy-resources:
#16 26.86
#16 26.86 compile:
#16 27.10 [resolver:resolve] Resolving artifacts
#16 27.11
#16 27.11 bio-formats-plugins.jar:
#16 27.12 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 27.13 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 27.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 27.13 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.13 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.13
#16 27.13 deps-bio-formats-tools:
#16 27.13
#16 27.13 jar-bio-formats-tools:
#16 27.22 [echo] isSnapshot = true
#16 27.37
#16 27.37 init-title:
#16 27.37 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.37
#16 27.37 init-timestamp:
#16 27.37
#16 27.37 init:
#16 27.37
#16 27.37 copy-resources:
#16 27.37
#16 27.37 compile:
#16 27.61 [resolver:resolve] Resolving artifacts
#16 27.62
#16 27.62 bio-formats-tools.jar:
#16 27.62 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.63 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.63 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.63
#16 27.63 deps-tests:
#16 27.63
#16 27.63 jar-tests:
#16 27.72 [echo] isSnapshot = true
#16 27.88
#16 27.88 init-title:
#16 27.88 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.88
#16 27.88 init-timestamp:
#16 27.88
#16 27.88 init:
#16 27.88
#16 27.88 copy-resources:
#16 27.88
#16 27.88 compile:
#16 28.14 [resolver:resolve] Resolving artifacts
#16 28.16
#16 28.16 tests.jar:
#16 28.16 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 28.17 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 28.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 28.17 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.17 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.17
#16 28.17 jars:
#16 28.17
#16 28.17 tools:
#16 28.17 [echo] ----------=========== bioformats_package ===========----------
#16 28.27 [echo] isSnapshot = true
#16 28.42
#16 28.42 init-timestamp:
#16 28.42
#16 28.42 bundle:
#16 28.70 [resolver:resolve] Resolving artifacts
#16 28.71 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.77 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.79 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.80 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.86 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.93 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.95 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.18 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.25 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.31 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.33 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.34 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.24 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.27 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.49 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.16 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.30 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.62 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.92 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.61 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.62 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.89 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.90 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.91 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.35 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.47 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.96 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.73 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.41 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 40.41 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 40.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 40.46 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 40.46 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.46
#16 40.46 BUILD SUCCESSFUL
#16 40.46 Total time: 39 seconds
#16 DONE 41.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 5.1s done
#18 writing image sha256:04cf501a51aa7ade3db2bffddda5ecbef94ce958cfcd2289cdf5ee50b52465b6 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 5.1s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS