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Skipping 2,099 KB.. Full Log
#14 415.5 Progress (4): 435 kB | 290 kB | 262/632 kB | 12/195 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar
#14 415.5 Progress (4): 435 kB | 290 kB | 266/632 kB | 20/195 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar (435 kB at 1.1 MB/s)
#14 415.5 Progress (3): 290 kB | 291/632 kB | 37/195 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
#14 415.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar (290 kB at 754 kB/s)
#14 415.5 Progress (2): 295/632 kB | 41/195 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.0/plexus-utils-3.3.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar (195 kB at 482 kB/s)
#14 415.6 Progress (4): 632 kB | 76 kB | 37 kB | 139/263 kB
                                                 
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0/doxia-sink-api-1.0.jar
#14 415.6 Progress (4): 632 kB | 76 kB | 37 kB | 143/263 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar (632 kB at 1.5 MB/s)
#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/1.0/doxia-site-renderer-1.0.jar
#14 415.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar (76 kB at 183 kB/s)
#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar
#14 415.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar (37 kB at 89 kB/s)
#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
#14 415.6 Progress (2): 263 kB | 4.1/10 kB
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#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity/1.5/velocity-1.5.jar
#14 415.6 Progress (2): 10 kB | 4.1/47 kB
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#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.1/commons-lang-2.1.jar
#14 415.6 Progress (4): 47 kB | 55 kB | 7.7 kB | 4.1/392 kB
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#14 415.6 Progress (3): 55 kB | 7.7 kB | 29/392 kB
                                        
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar
#14 415.6 Progress (3): 55 kB | 7.7 kB | 33/392 kB
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#14 415.6 Progress (2): 7.7 kB | 119/392 kB
                                 
Downloading from central: https://repo.maven.apache.org/maven2/commons-collections/commons-collections/3.2/commons-collections-3.2.jar
#14 415.6 Progress (2): 7.7 kB | 123/392 kB
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#14 415.6 Progress (1): 131/392 kB
                        
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#14 415.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar (49 kB at 106 kB/s)
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#14 415.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.0/doxia-module-fml-1.0.jar (19 kB at 38 kB/s)
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#14 415.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 308 kB/s)
#14 415.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
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#14 415.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
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#14 416.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.pom
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#14 419.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-messaging/2.14.3-02/nexus-buildsupport-messaging-2.14.3-02.pom
#14 419.2 Progress (1): 4.1/5.0 kB
Progress (1): 5.0 kB    
                    
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#14 419.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.14.3-02/nexus-buildsupport-shiro-2.14.3-02.pom
#14 419.4 Progress (1): 3.4 kB
                    
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#14 419.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.14.3-02/nexus-buildsupport-bouncycastle-2.14.3-02.pom
#14 419.5 Progress (1): 2.1 kB
                    
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#14 419.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.14.3-02/nexus-buildsupport-jetty-2.14.3-02.pom
#14 419.7 Progress (1): 4.1/4.5 kB
Progress (1): 4.5 kB    
                    
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#14 419.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.14.3-02/nexus-buildsupport-goodies-2.14.3-02.pom
#14 419.9 Progress (1): 3.6 kB
                    
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#14 420.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.14.3-02/nexus-buildsupport-groovy-2.14.3-02.pom
#14 420.1 Progress (1): 3.1 kB
                    
Downloaded from rso-public-grid: https://reposito
#14 420.2 [output clipped, log limit 2MiB reached]
#14 519.5 SLF4J: No SLF4J providers were found.
#14 519.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 519.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 529.1s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s

#16 [12/13] RUN ant jars tools
#16 1.032 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.866      [echo] isSnapshot = true
#16 1.976 
#16 1.976 copy-jars:
#16 1.976 
#16 1.976 deps-formats-api:
#16 2.064      [echo] isSnapshot = true
#16 2.127 
#16 2.127 install-pom:
#16 2.347 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 2.440 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 2.445 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.447 
#16 2.447 jar-formats-api:
#16 2.575      [echo] isSnapshot = true
#16 2.776 
#16 2.776 init-title:
#16 2.777      [echo] ----------=========== formats-api ===========----------
#16 2.777 
#16 2.777 init-timestamp:
#16 2.782 
#16 2.782 init:
#16 2.782 
#16 2.782 copy-resources:
#16 2.783     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.800      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.803 
#16 2.803 compile:
#16 3.007 [resolver:resolve] Resolving artifacts
#16 3.038     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.738     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.738     [javac] import loci.common.ReflectedUniverse;
#16 3.738     [javac]                   ^
#16 3.939     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.939     [javac]     int currentIndex = r.getCoreIndex();
#16 3.939     [javac]                         ^
#16 3.939     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.939     [javac]     r.setCoreIndex(coreIndex);
#16 3.939     [javac]      ^
#16 3.939     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.939     [javac]     r.setCoreIndex(currentIndex);
#16 3.939     [javac]      ^
#16 4.039     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.039     [javac]   public void setCoreIndex(int no) {
#16 4.039     [javac]               ^
#16 4.039     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.040     [javac]   public int getCoreIndex() {
#16 4.040     [javac]              ^
#16 4.040     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.040     [javac]   public int coreIndexToSeries(int index)
#16 4.040     [javac]              ^
#16 4.040     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.040     [javac]   public int seriesToCoreIndex(int series)
#16 4.040     [javac]              ^
#16 4.040     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.040     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.040     [javac]                             ^
#16 4.140     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.141     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.141     [javac]                                              ^
#16 4.141     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.141     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.141     [javac]                                              ^
#16 4.141     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.141     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.141     [javac]                                                      ^
#16 4.141     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.141     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.141     [javac]                                                      ^
#16 4.242     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.242     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.242     [javac]     ^
#16 4.242     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.242     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.242     [javac]                               ^
#16 4.242     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.242     [javac]   public void setCoreIndex(int no) {
#16 4.242     [javac]               ^
#16 4.242     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.242     [javac]   public int getCoreIndex() {
#16 4.242     [javac]              ^
#16 4.242     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.242     [javac]   public int coreIndexToSeries(int index) {
#16 4.243     [javac]              ^
#16 4.243     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.243     [javac]   public int seriesToCoreIndex(int series) {
#16 4.243     [javac]              ^
#16 4.243     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.243     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.243     [javac]                             ^
#16 4.343     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.343     [javac]     return getReader().getCoreMetadataList();
#16 4.343     [javac]                       ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.344     [javac]     return getReader().getCoreIndex();
#16 4.344     [javac]                       ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.344     [javac]     getReader().setCoreIndex(no);
#16 4.344     [javac]                ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.344     [javac]     return getReader().seriesToCoreIndex(series);
#16 4.344     [javac]                       ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.344     [javac]     return getReader().coreIndexToSeries(index);
#16 4.344     [javac]                       ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.344     [javac]   public void setCoreIndex(int no) {
#16 4.344     [javac]               ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.344     [javac]   public int getCoreIndex() {
#16 4.344     [javac]              ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.344     [javac]   public int coreIndexToSeries(int index) {
#16 4.344     [javac]              ^
#16 4.344     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.345     [javac]   public int seriesToCoreIndex(int series) {
#16 4.345     [javac]              ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.345     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.345     [javac]                             ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.345     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.345     [javac]                                        ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.345     [javac]     return reader.getCoreIndex();
#16 4.345     [javac]                  ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.345     [javac]     reader.setCoreIndex(no);
#16 4.345     [javac]           ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.345     [javac]     return reader.seriesToCoreIndex(series);
#16 4.345     [javac]                  ^
#16 4.345     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.345     [javac]     return reader.coreIndexToSeries(index);
#16 4.345     [javac]                  ^
#16 4.629     [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.629     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.629     [javac] 35 warnings
#16 4.630 
#16 4.630 formats-api.jar:
#16 4.630     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.659       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.693 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.698 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.727 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.728 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.731 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.732 
#16 4.732 deps-turbojpeg:
#16 4.732 
#16 4.732 jar-turbojpeg:
#16 4.844      [echo] isSnapshot = true
#16 5.038 
#16 5.038 init-title:
#16 5.038      [echo] ----------=========== turbojpeg ===========----------
#16 5.038 
#16 5.038 init-timestamp:
#16 5.039 
#16 5.039 init:
#16 5.039 
#16 5.039 copy-resources:
#16 5.039     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.040 
#16 5.040 compile:
#16 5.052 [resolver:resolve] Resolving artifacts
#16 5.057     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.843 
#16 5.843 jar:
#16 5.848       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.036 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 6.045 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 6.065 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 6.068 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 6.072 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.073 
#16 6.073 deps-formats-bsd:
#16 6.073 
#16 6.073 jar-formats-bsd:
#16 6.182      [echo] isSnapshot = true
#16 6.366 
#16 6.366 init-title:
#16 6.367      [echo] ----------=========== formats-bsd ===========----------
#16 6.367 
#16 6.367 init-timestamp:
#16 6.367 
#16 6.367 init:
#16 6.367 
#16 6.367 copy-resources:
#16 6.367     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.371      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.372 
#16 6.372 compile:
#16 6.599 [resolver:resolve] Resolving artifacts
#16 6.634     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.544     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.544     [javac] import loci.common.ReflectedUniverse;
#16 7.544     [javac]                   ^
#16 8.045     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.045     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 8.045     [javac]                            ^
#16 8.045     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.045     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.045     [javac]                                          ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.146     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.146     [javac]                   ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.146     [javac]     reader.setCoreIndex(coreIndex);
#16 8.146     [javac]           ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.146     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.146     [javac]                   ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.146     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.146     [javac]                   ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.146     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.146     [javac]                                         ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.146     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.146     [javac]                   ^
#16 8.146     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.146     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.146     [javac]                                         ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.147     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.147     [javac]                   ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.147     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.147     [javac]                                  ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.147     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.147     [javac]                  ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.147     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.147     [javac]                                              ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.147     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 8.147     [javac]                             ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.147     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.147     [javac]               ^
#16 8.147     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.147     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 8.148     [javac]                           ^
#16 8.148     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.148     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.148     [javac]                 ^
#16 8.148     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.148     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.148     [javac]               ^
#16 8.148     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.148     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.148     [javac]                            ^
#16 8.248     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.248     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.248     [javac]                               ^
#16 8.349     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.349     [javac]     BitWriter out = new BitWriter();
#16 8.349     [javac]     ^
#16 8.349     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.349     [javac]     BitWriter out = new BitWriter();
#16 8.349     [javac]                         ^
#16 9.250     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.250     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.250     [javac]                                                                    ^
#16 9.350     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.350     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 9.350     [javac]                          ^
#16 9.350     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.350     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.350     [javac]                                                    ^
#16 9.350     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.350     [javac]   protected ReflectedUniverse r;
#16 9.350     [javac]             ^
#16 9.350     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.351     [javac]       r = new ReflectedUniverse();
#16 9.351     [javac]               ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.451     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.451     [javac]                                                                               ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.451     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.451     [javac]                                                                                ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.451     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.451     [javac]                                                                                   ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.451     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.451     [javac]                                                                                   ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.451     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.451     [javac]                                                                                        ^
#16 9.451     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.452     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.452     [javac]                                                                                         ^
#16 9.452     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.452     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.452     [javac]                                                                                        ^
#16 9.452     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.452     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.452     [javac]                                                                                                               ^
#16 9.452     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.452     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.452     [javac]                                                                                                               ^
#16 9.552     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.552     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.552     [javac]                                        ^
#16 9.653     [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.653     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.653     [javac] 38 warnings
#16 9.756 
#16 9.756 formats-bsd.jar:
#16 9.766       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.880 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.884 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.898 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.900 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.902 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.903 
#16 9.903 deps-formats-gpl:
#16 9.903 
#16 9.903 jar-formats-gpl:
#16 10.01      [echo] isSnapshot = true
#16 10.18 
#16 10.18 init-title:
#16 10.18      [echo] ----------=========== formats-gpl ===========----------
#16 10.18 
#16 10.18 init-timestamp:
#16 10.18 
#16 10.18 init:
#16 10.18 
#16 10.18 copy-resources:
#16 10.18     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.18      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.18 
#16 10.18 compile:
#16 10.65 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.91 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.95 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.98 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.99 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.03 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.04 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.08 [resolver:resolve] Resolving artifacts
#16 11.09 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.09 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.13 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.13 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.14 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.14 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.16     [javac] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.37     [javac] import loci.formats.codec.BitWriter;
#16 12.37     [javac]                          ^
#16 12.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.37     [javac] import loci.formats.codec.BitWriter;
#16 12.37     [javac]                          ^
#16 14.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.27     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.27     [javac]                                          ^
#16 14.27     [javac]   cast to Object for a varargs call
#16 14.27     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 14.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.37     [javac]     BitWriter bits = null;
#16 14.37     [javac]     ^
#16 14.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.37     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 14.37     [javac]                  ^
#16 14.57     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.57     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.57     [javac]                                                    ^
#16 14.97     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.97     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.97     [javac]     ^
#16 14.97     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.97     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.97     [javac]                          ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.27     [javac]     Variable variable = group.findVariable(variableName);
#16 15.27     [javac]                              ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.27     [javac]     Variable variable = group.findVariable(variableName);
#16 15.27     [javac]                              ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.27     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 15.27     [javac]                                            ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.27     [javac]       String groupName = group.getName();
#16 15.27     [javac]                               ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.27     [javac]       List<Attribute> attributes = group.getAttributes();
#16 15.27     [javac]                                         ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.27     [javac]         String variableName = variable.getName();
#16 15.27     [javac]                                       ^
#16 15.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.27     [javac]       Group nextParent = parent.findGroup(token);
#16 15.27     [javac]                                ^
#16 15.27     [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.27     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.27     [javac] 15 warnings
#16 15.31 
#16 15.31 formats-gpl.jar:
#16 15.32       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.46 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 15.47 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 15.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 15.49 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 15.49 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.49 
#16 15.49 deps-bio-formats-plugins:
#16 15.49 
#16 15.49 jar-bio-formats-plugins:
#16 15.60      [echo] isSnapshot = true
#16 15.77 
#16 15.77 init-title:
#16 15.77      [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.77 
#16 15.77 init-timestamp:
#16 15.77 
#16 15.77 init:
#16 15.77 
#16 15.77 copy-resources:
#16 15.77     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.77      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.77 
#16 15.77 compile:
#16 16.02 [resolver:resolve] Resolving artifacts
#16 16.04     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.84     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.84     [javac] import loci.common.ReflectedUniverse;
#16 16.84     [javac]                   ^
#16 16.84     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.84     [javac] import loci.common.ReflectedUniverse;
#16 16.84     [javac]                   ^
#16 17.24     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.24     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.24     [javac]                                      ^
#16 17.54     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.54     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.54     [javac]         ^
#16 17.54     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.54     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.54     [javac]                                   ^
#16 17.64     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.64     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.64     [javac]     ^
#16 17.64     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.64     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.64     [javac]                                ^
#16 18.00     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.00     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.00     [javac] 7 warnings
#16 18.00 
#16 18.00 bio-formats-plugins.jar:
#16 18.01       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.04 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.05 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.34 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.35 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.35 
#16 18.35 deps-bio-formats-tools:
#16 18.35 
#16 18.35 jar-bio-formats-tools:
#16 18.45      [echo] isSnapshot = true
#16 18.63 
#16 18.63 init-title:
#16 18.63      [echo] ----------=========== bio-formats-tools ===========----------
#16 18.63 
#16 18.63 init-timestamp:
#16 18.63 
#16 18.63 init:
#16 18.63 
#16 18.63 copy-resources:
#16 18.63     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.63 
#16 18.63 compile:
#16 18.91 [resolver:resolve] Resolving artifacts
#16 18.93     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.94 
#16 19.94 bio-formats-tools.jar:
#16 19.94       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.95 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 19.95 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 19.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 19.97 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 19.97 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.97 
#16 19.97 deps-tests:
#16 19.97 
#16 19.97 jar-tests:
#16 20.07      [echo] isSnapshot = true
#16 20.25 
#16 20.25 init-title:
#16 20.25      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.25 
#16 20.25 init-timestamp:
#16 20.25 
#16 20.25 init:
#16 20.25 
#16 20.25 copy-resources:
#16 20.25     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.25 
#16 20.25 compile:
#16 20.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.66 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.67 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.30 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.71 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 21.74 [resolver:resolve] Resolving artifacts
#16 21.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.79 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.81 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.21 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.47 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.48     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.51     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.51     [javac]         int index = unflattenedReader.getCoreIndex();
#16 23.51     [javac]                                      ^
#16 23.51     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.51     [javac]         reader.setCoreIndex(index);
#16 23.51     [javac]               ^
#16 23.71     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.71     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 23.71     [javac]                                              ^
#16 23.71     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.71     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 23.71     [javac]                                              ^
#16 23.91     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.91     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 23.91     [javac]                                                    ^
#16 23.91     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.91     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 23.91     [javac]                                                    ^
#16 23.97     [javac] Note: Some input files use unchecked or unsafe operations.
#16 23.97     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 23.97     [javac] 6 warnings
#16 23.97 
#16 23.97 tests.jar:
#16 23.98       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 23.99 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 23.99 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.14 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.14 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.14 
#16 24.14 jars:
#16 24.14 
#16 24.14 copy-jars:
#16 24.14 
#16 24.14 deps-formats-api:
#16 24.20      [echo] isSnapshot = true
#16 24.26 
#16 24.26 install-pom:
#16 24.43 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 24.43 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.44 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.44 
#16 24.44 jar-formats-api:
#16 24.53      [echo] isSnapshot = true
#16 24.71 
#16 24.71 init-title:
#16 24.71      [echo] ----------=========== formats-api ===========----------
#16 24.71 
#16 24.71 init-timestamp:
#16 24.71 
#16 24.71 init:
#16 24.71 
#16 24.71 copy-resources:
#16 24.71 
#16 24.71 compile:
#16 24.86 [resolver:resolve] Resolving artifacts
#16 24.87 
#16 24.87 formats-api.jar:
#16 24.89 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 24.89 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 24.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 24.90 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.90 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 24.90 
#16 24.90 deps-turbojpeg:
#16 24.90 
#16 24.90 jar-turbojpeg:
#16 25.18      [echo] isSnapshot = true
#16 25.36 
#16 25.36 init-title:
#16 25.36      [echo] ----------=========== turbojpeg ===========----------
#16 25.36 
#16 25.36 init-timestamp:
#16 25.36 
#16 25.36 init:
#16 25.36 
#16 25.36 copy-resources:
#16 25.36 
#16 25.36 compile:
#16 25.37 [resolver:resolve] Resolving artifacts
#16 25.38 
#16 25.38 jar:
#16 25.38 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.39 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.40 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.40 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.40 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.40 
#16 25.40 deps-formats-bsd:
#16 25.40 
#16 25.40 jar-formats-bsd:
#16 25.50      [echo] isSnapshot = true
#16 25.70 
#16 25.70 init-title:
#16 25.70      [echo] ----------=========== formats-bsd ===========----------
#16 25.70 
#16 25.70 init-timestamp:
#16 25.70 
#16 25.70 init:
#16 25.70 
#16 25.70 copy-resources:
#16 25.70 
#16 25.70 compile:
#16 25.94 [resolver:resolve] Resolving artifacts
#16 25.97 
#16 25.97 formats-bsd.jar:
#16 26.02 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 26.02 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 26.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 26.03 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.03 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.03 
#16 26.03 deps-formats-gpl:
#16 26.03 
#16 26.03 jar-formats-gpl:
#16 26.14      [echo] isSnapshot = true
#16 26.32 
#16 26.32 init-title:
#16 26.32      [echo] ----------=========== formats-gpl ===========----------
#16 26.32 
#16 26.32 init-timestamp:
#16 26.32 
#16 26.32 init:
#16 26.32 
#16 26.32 copy-resources:
#16 26.32 
#16 26.32 compile:
#16 26.57 [resolver:resolve] Resolving artifacts
#16 26.59 
#16 26.59 formats-gpl.jar:
#16 26.63 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.63 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.63 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.63 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.64 
#16 26.64 deps-bio-formats-plugins:
#16 26.64 
#16 26.64 jar-bio-formats-plugins:
#16 26.72      [echo] isSnapshot = true
#16 26.89 
#16 26.89 init-title:
#16 26.89      [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.89 
#16 26.89 init-timestamp:
#16 26.89 
#16 26.89 init:
#16 26.89 
#16 26.89 copy-resources:
#16 26.89 
#16 26.89 compile:
#16 27.13 [resolver:resolve] Resolving artifacts
#16 27.15 
#16 27.15 bio-formats-plugins.jar:
#16 27.16 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 27.16 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 27.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 27.17 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.17 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.17 
#16 27.17 deps-bio-formats-tools:
#16 27.17 
#16 27.17 jar-bio-formats-tools:
#16 27.26      [echo] isSnapshot = true
#16 27.43 
#16 27.43 init-title:
#16 27.43      [echo] ----------=========== bio-formats-tools ===========----------
#16 27.43 
#16 27.43 init-timestamp:
#16 27.43 
#16 27.43 init:
#16 27.43 
#16 27.43 copy-resources:
#16 27.43 
#16 27.43 compile:
#16 27.67 [resolver:resolve] Resolving artifacts
#16 27.68 
#16 27.68 bio-formats-tools.jar:
#16 27.68 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.68 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.69 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.69 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.69 
#16 27.69 deps-tests:
#16 27.69 
#16 27.69 jar-tests:
#16 27.78      [echo] isSnapshot = true
#16 27.95 
#16 27.95 init-title:
#16 27.95      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.95 
#16 27.95 init-timestamp:
#16 27.95 
#16 27.95 init:
#16 27.95 
#16 27.95 copy-resources:
#16 27.95 
#16 27.95 compile:
#16 28.20 [resolver:resolve] Resolving artifacts
#16 28.21 
#16 28.21 tests.jar:
#16 28.22 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 28.23 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 28.23 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.23 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.23 
#16 28.23 jars:
#16 28.23 
#16 28.23 tools:
#16 28.23      [echo] ----------=========== bioformats_package ===========----------
#16 28.33      [echo] isSnapshot = true
#16 28.52 
#16 28.52 init-timestamp:
#16 28.52 
#16 28.52 bundle:
#16 28.80 [resolver:resolve] Resolving artifacts
#16 28.81     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.84     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.86     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.90     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.96     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.05     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.29     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.35     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.37     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.43     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.44     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.45     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.46     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.14     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.22     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.23     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.23     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.29     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.35     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.51     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.18     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.41     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.44     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.81     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.91     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.63     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.77     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.84     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.85     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.91     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.13     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.13     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.15     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.15     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.58     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.71     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.14       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.35    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.03 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 41.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 41.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 41.11 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 41.12 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.14 
#16 41.14 BUILD SUCCESSFUL
#16 41.14 Total time: 40 seconds
#16 DONE 42.1s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.6s done
#18 writing image sha256:8ad7a99166b0f291302ddb3d28367cd98d5eb579538275fc4e59e865cbff5b0c done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.7s

 1 warning found (use docker --debug to expand):
 - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS