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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.7 MB/s)
#14 425.3 Progress (4): 117/175 kB | 135/153 kB | 0.3/1.8 MB | 109/350 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
#14 425.3 Progress (4): 117/175 kB | 135/153 kB | 0.3/1.8 MB | 109/350 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.jar (153 kB at 3.5 MB/s)
#14 425.3 Progress (4): 175 kB | 0.7/1.8 MB | 318/350 kB | 21 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar
#14 425.3 Progress (4): 175 kB | 0.7/1.8 MB | 322/350 kB | 21 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar (175 kB at 3.6 MB/s)
#14 425.3 Progress (3): 0.8/1.8 MB | 350 kB | 21 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar
#14 425.3 Progress (3): 0.8/1.8 MB | 350 kB | 21 kB
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#14 425.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
#14 425.3 Progress (2): 0.9/1.8 MB | 350 kB
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#14 425.3 Progress (2): 1.0/1.8 MB | 9.9 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar
#14 425.3 Progress (2): 1.0/1.8 MB | 9.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar (9.9 kB at 144 kB/s)
#14 425.3 Progress (3): 1.2/1.8 MB | 35 kB | 68/86 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.jar
#14 425.3 Progress (3): 1.2/1.8 MB | 35 kB | 72/86 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar (35 kB at 483 kB/s)
#14 425.3 Progress (3): 1.3/1.8 MB | 86 kB | 45/88 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
#14 425.3 Progress (3): 1.3/1.8 MB | 86 kB | 49/88 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar (86 kB at 1.0 MB/s)
#14 425.3 Progress (3): 1.5/1.8 MB | 88 kB | 20/24 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar
#14 425.3 Progress (3): 1.6/1.8 MB | 88 kB | 24 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar (88 kB at 1.0 MB/s)
#14 425.3 Progress (3): 1.6/1.8 MB | 24 kB | 14 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
#14 425.3 Progress (3): 1.6/1.8 MB | 24 kB | 14 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.jar (24 kB at 255 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.jar
#14 425.4 Progress (3): 1.8 MB | 14 kB | 4.1/117 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar (14 kB at 139 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar
#14 425.4 Progress (2): 1.8 MB | 37/117 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.jar (1.8 MB at 17 MB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar
#14 425.4 Progress (3): 117 kB | 29 kB | 4.1/30 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar (117 kB at 1.0 MB/s)
#14 425.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar (29 kB at 256 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
#14 425.4 Progress (3): 30 kB | 13 kB | 4.1/37 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.jar (30 kB at 249 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar
#14 425.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar (13 kB at 105 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
#14 425.4 Progress (2): 37 kB | 4.1/10 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar (37 kB at 277 kB/s)
#14 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.jar
#14 425.4 Progress (3): 10 kB | 57 kB | 4.1/22 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar (10 kB at 74 kB/s)
#14 425.4 Progress (3): 57 kB | 22 kB | 110/184 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.jar
#14 425.4 Progress (3): 57 kB | 22 kB | 114/184 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar (57 kB at 404 kB/s)
#14 425.4 Progress (2): 22 kB | 135/184 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar
#14 425.4 Progress (2): 22 kB | 139/184 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar (22 kB at 149 kB/s)
#14 425.4 Progress (2): 184 kB | 8.2/58 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar (184 kB at 1.2 MB/s)
#14 425.4 Progress (3): 58 kB | 60 kB | 12/231 kB
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#14 425.4 Progress (2): 60 kB | 127/231 kB
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#14 425.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
#14 425.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom
#14 425.6 Progress (1): 4.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom (4.1 kB at 135 kB/s)
#14 425.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom
#14 425.6 Progress (1): 3.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom (3.0 kB at 127 kB/s)
#14 425.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon/3.5.2/wagon-3.5.2.pom
#14 425.6 Progress (1): 4.1/21 kB
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#14 425.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom
#14 425.7 Progress (1): 2.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom (2.0 kB at 81 kB/s)
#14 425.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom
#14 425.7 Progress (1): 823 B
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#14 425.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom
#14 425.7 Progress (1): 1.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom (1.7 kB at 72 kB/s)
#14 425.7 Downloading from central: https://repo.maven.apache.org
#14 425.7 [output clipped, log limit 2MiB reached]
#14 520.6 SLF4J: No SLF4J providers were found.
#14 520.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 520.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 530.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 1.290 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.019 [echo] isSnapshot = true
#16 2.122
#16 2.122 copy-jars:
#16 2.122
#16 2.122 deps-formats-api:
#16 2.203 [echo] isSnapshot = true
#16 2.263
#16 2.263 install-pom:
#16 2.462 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.877 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.882 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.884
#16 2.884 jar-formats-api:
#16 2.999 [echo] isSnapshot = true
#16 3.187
#16 3.187 init-title:
#16 3.188 [echo] ----------=========== formats-api ===========----------
#16 3.188
#16 3.188 init-timestamp:
#16 3.192
#16 3.192 init:
#16 3.192
#16 3.192 copy-resources:
#16 3.193 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.208 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.211
#16 3.211 compile:
#16 3.400 [resolver:resolve] Resolving artifacts
#16 3.428 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.109 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.109 [javac] import loci.common.ReflectedUniverse;
#16 4.109 [javac] ^
#16 4.310 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.310 [javac] int currentIndex = r.getCoreIndex();
#16 4.310 [javac] ^
#16 4.310 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.310 [javac] r.setCoreIndex(coreIndex);
#16 4.310 [javac] ^
#16 4.310 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.310 [javac] r.setCoreIndex(currentIndex);
#16 4.310 [javac] ^
#16 4.410 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.411 [javac] public void setCoreIndex(int no) {
#16 4.411 [javac] ^
#16 4.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.411 [javac] public int getCoreIndex() {
#16 4.411 [javac] ^
#16 4.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.411 [javac] public int coreIndexToSeries(int index)
#16 4.411 [javac] ^
#16 4.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.411 [javac] public int seriesToCoreIndex(int series)
#16 4.411 [javac] ^
#16 4.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.411 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.412 [javac] ^
#16 4.512 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.512 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.512 [javac] ^
#16 4.512 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.512 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.512 [javac] ^
#16 4.512 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.512 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.513 [javac] ^
#16 4.513 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.513 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.513 [javac] ^
#16 4.513 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.513 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.513 [javac] ^
#16 4.513 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.513 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.513 [javac] ^
#16 4.714 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.714 [javac] public void setCoreIndex(int no) {
#16 4.714 [javac] ^
#16 4.714 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.714 [javac] public int getCoreIndex() {
#16 4.714 [javac] ^
#16 4.714 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.714 [javac] public int coreIndexToSeries(int index) {
#16 4.714 [javac] ^
#16 4.714 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.714 [javac] public int seriesToCoreIndex(int series) {
#16 4.714 [javac] ^
#16 4.715 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.715 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.715 [javac] ^
#16 4.715 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.715 [javac] return getReader().getCoreMetadataList();
#16 4.715 [javac] ^
#16 4.715 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.715 [javac] return getReader().getCoreIndex();
#16 4.715 [javac] ^
#16 4.715 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.715 [javac] getReader().setCoreIndex(no);
#16 4.715 [javac] ^
#16 4.715 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.716 [javac] return getReader().seriesToCoreIndex(series);
#16 4.716 [javac] ^
#16 4.716 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.716 [javac] return getReader().coreIndexToSeries(index);
#16 4.716 [javac] ^
#16 4.816 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.816 [javac] public void setCoreIndex(int no) {
#16 4.816 [javac] ^
#16 4.816 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.816 [javac] public int getCoreIndex() {
#16 4.816 [javac] ^
#16 4.817 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.817 [javac] public int coreIndexToSeries(int index) {
#16 4.817 [javac] ^
#16 4.817 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.817 [javac] public int seriesToCoreIndex(int series) {
#16 4.817 [javac] ^
#16 4.817 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.817 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.817 [javac] ^
#16 4.817 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.817 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.817 [javac] ^
#16 4.817 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.817 [javac] return reader.getCoreIndex();
#16 4.817 [javac] ^
#16 4.818 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.818 [javac] reader.setCoreIndex(no);
#16 4.818 [javac] ^
#16 4.818 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.818 [javac] return reader.seriesToCoreIndex(series);
#16 4.818 [javac] ^
#16 4.818 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.818 [javac] return reader.coreIndexToSeries(index);
#16 4.818 [javac] ^
#16 4.918 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.919 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.919 [javac] 35 warnings
#16 4.992
#16 4.992 formats-api.jar:
#16 4.992 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.020 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.056 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 5.062 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 5.065 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 5.067 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.070 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.071
#16 5.071 deps-turbojpeg:
#16 5.071
#16 5.071 jar-turbojpeg:
#16 5.191 [echo] isSnapshot = true
#16 5.374
#16 5.374 init-title:
#16 5.374 [echo] ----------=========== turbojpeg ===========----------
#16 5.374
#16 5.374 init-timestamp:
#16 5.374
#16 5.374 init:
#16 5.375
#16 5.375 copy-resources:
#16 5.375 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.376
#16 5.376 compile:
#16 5.388 [resolver:resolve] Resolving artifacts
#16 5.392 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.107
#16 6.107 jar:
#16 6.113 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.305 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.315 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.318 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.321 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.326 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.328
#16 6.328 deps-formats-bsd:
#16 6.328
#16 6.328 jar-formats-bsd:
#16 6.439 [echo] isSnapshot = true
#16 6.626
#16 6.626 init-title:
#16 6.626 [echo] ----------=========== formats-bsd ===========----------
#16 6.626
#16 6.626 init-timestamp:
#16 6.627
#16 6.627 init:
#16 6.627
#16 6.627 copy-resources:
#16 6.627 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.631 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.632
#16 6.632 compile:
#16 6.853 [resolver:resolve] Resolving artifacts
#16 6.888 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.899 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.899 [javac] import loci.common.ReflectedUniverse;
#16 7.899 [javac] ^
#16 8.299 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.299 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.299 [javac] ^
#16 8.299 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.299 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.300 [javac] int n = reader.getCoreMetadataList().size();
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.300 [javac] reader.setCoreIndex(coreIndex);
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.300 [javac] int n = reader.getCoreMetadataList().size();
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.300 [javac] int n = reader.getCoreMetadataList().size();
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.300 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.300 [javac] ^
#16 8.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.300 [javac] int n = reader.getCoreMetadataList().size();
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.301 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.301 [javac] int n = reader.getCoreMetadataList().size();
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.301 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.301 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.301 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.301 [javac] ^
#16 8.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.301 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.302 [javac] ^
#16 8.302 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.302 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.302 [javac] ^
#16 8.302 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.302 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.302 [javac] ^
#16 8.302 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.302 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.302 [javac] ^
#16 8.302 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.302 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.302 [javac] ^
#16 8.302 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.302 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.302 [javac] ^
#16 8.503 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.503 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.503 [javac] ^
#16 8.603 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.603 [javac] BitWriter out = new BitWriter();
#16 8.603 [javac] ^
#16 8.603 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.603 [javac] BitWriter out = new BitWriter();
#16 8.603 [javac] ^
#16 9.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.604 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.604 [javac] ^
#16 9.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.604 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.604 [javac] ^
#16 9.705 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.705 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.705 [javac] ^
#16 9.705 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.705 [javac] protected ReflectedUniverse r;
#16 9.705 [javac] ^
#16 9.705 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.705 [javac] r = new ReflectedUniverse();
#16 9.705 [javac] ^
#16 9.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 9.805 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.805 [javac] ^
#16 9.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 9.805 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.805 [javac] ^
#16 9.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 9.805 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.805 [javac] ^
#16 9.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 9.805 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.805 [javac] ^
#16 9.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 9.806 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.806 [javac] ^
#16 9.806 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 9.806 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.806 [javac] ^
#16 9.806 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 9.806 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.806 [javac] ^
#16 9.806 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 9.806 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.806 [javac] ^
#16 9.806 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.806 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.806 [javac] ^
#16 9.906 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.906 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.906 [javac] ^
#16 10.01 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.01 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.01 [javac] 38 warnings
#16 10.06
#16 10.06 formats-bsd.jar:
#16 10.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.18 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.18 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.23 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.23 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.24 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.24
#16 10.24 deps-formats-gpl:
#16 10.24
#16 10.24 jar-formats-gpl:
#16 10.34 [echo] isSnapshot = true
#16 10.52
#16 10.52 init-title:
#16 10.52 [echo] ----------=========== formats-gpl ===========----------
#16 10.52
#16 10.52 init-timestamp:
#16 10.52
#16 10.52 init:
#16 10.52
#16 10.52 copy-resources:
#16 10.52 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.52 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.52
#16 10.52 compile:
#16 10.99 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.27 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.85 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.85 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.87 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.89 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.02 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.07 [resolver:resolve] Resolving artifacts
#16 12.08 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.08 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.12 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.13 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.15 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.15 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.56 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.57 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.58 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.79 [javac] import loci.formats.codec.BitWriter;
#16 13.79 [javac] ^
#16 13.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.79 [javac] import loci.formats.codec.BitWriter;
#16 13.79 [javac] ^
#16 15.39 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.39 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.39 [javac] ^
#16 15.39 [javac] cast to Object for a varargs call
#16 15.39 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.49 [javac] BitWriter bits = null;
#16 15.49 [javac] ^
#16 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.49 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.49 [javac] ^
#16 15.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.80 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.80 [javac] ^
#16 16.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.20 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.20 [javac] ^
#16 16.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.20 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.20 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.47 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.47 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.47 [javac] String groupName = group.getName();
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.47 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.47 [javac] String attributeName = attribute.getName();
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.47 [javac] String variableName = variable.getName();
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.47 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.47 [javac] ^
#16 16.47 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.47 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.47 [javac] 15 warnings
#16 16.47
#16 16.47 formats-gpl.jar:
#16 16.48 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.63 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.70 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.70 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.70
#16 16.70 deps-bio-formats-plugins:
#16 16.70
#16 16.70 jar-bio-formats-plugins:
#16 16.80 [echo] isSnapshot = true
#16 16.98
#16 16.98 init-title:
#16 16.98 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.98
#16 16.98 init-timestamp:
#16 16.98
#16 16.98 init:
#16 16.98
#16 16.98 copy-resources:
#16 16.98 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.98 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.98
#16 16.98 compile:
#16 17.24 [resolver:resolve] Resolving artifacts
#16 17.26 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.06 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.06 [javac] import loci.common.ReflectedUniverse;
#16 18.06 [javac] ^
#16 18.06 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.06 [javac] import loci.common.ReflectedUniverse;
#16 18.06 [javac] ^
#16 18.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.46 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.46 [javac] ^
#16 18.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.66 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.66 [javac] ^
#16 18.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.66 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.66 [javac] ^
#16 18.76 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.76 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.76 [javac] ^
#16 18.76 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.76 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.76 [javac] ^
#16 19.11 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.11 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.11 [javac] 7 warnings
#16 19.11
#16 19.11 bio-formats-plugins.jar:
#16 19.11 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.14 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.15 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.15 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.16
#16 19.16 deps-bio-formats-tools:
#16 19.16
#16 19.16 jar-bio-formats-tools:
#16 19.27 [echo] isSnapshot = true
#16 19.47
#16 19.47 init-title:
#16 19.47 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.47
#16 19.47 init-timestamp:
#16 19.47
#16 19.47 init:
#16 19.47
#16 19.47 copy-resources:
#16 19.47 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.47
#16 19.47 compile:
#16 19.76 [resolver:resolve] Resolving artifacts
#16 19.77 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.73
#16 20.73 bio-formats-tools.jar:
#16 20.74 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.74 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.75 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.76 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.76 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.77 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.77
#16 20.77 deps-tests:
#16 20.77
#16 20.77 jar-tests:
#16 20.88 [echo] isSnapshot = true
#16 21.05
#16 21.05 init-title:
#16 21.05 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.05
#16 21.05 init-timestamp:
#16 21.05
#16 21.05 init:
#16 21.05
#16 21.05 copy-resources:
#16 21.06 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.06
#16 21.06 compile:
#16 21.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.47 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.91 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.33 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 22.35 [resolver:resolve] Resolving artifacts
#16 22.36 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.83 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.22 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.22 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.14 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.14 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.14 [javac] ^
#16 24.14 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.14 [javac] reader.setCoreIndex(index);
#16 24.14 [javac] ^
#16 24.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.34 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.34 [javac] ^
#16 24.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.34 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.34 [javac] ^
#16 24.64 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.64 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.64 [javac] ^
#16 24.64 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.64 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.64 [javac] ^
#16 24.64 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.64 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.64 [javac] 6 warnings
#16 24.64
#16 24.64 tests.jar:
#16 24.64 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.66 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 24.66 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 24.66 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 24.66 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.67 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.67
#16 24.67 jars:
#16 24.67
#16 24.67 copy-jars:
#16 24.67
#16 24.67 deps-formats-api:
#16 24.72 [echo] isSnapshot = true
#16 24.77
#16 24.77 install-pom:
#16 24.98 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 24.98 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.99 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.99
#16 24.99 jar-formats-api:
#16 25.09 [echo] isSnapshot = true
#16 25.32
#16 25.32 init-title:
#16 25.32 [echo] ----------=========== formats-api ===========----------
#16 25.32
#16 25.32 init-timestamp:
#16 25.32
#16 25.32 init:
#16 25.32
#16 25.32 copy-resources:
#16 25.32
#16 25.32 compile:
#16 25.49 [resolver:resolve] Resolving artifacts
#16 25.50
#16 25.50 formats-api.jar:
#16 25.52 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.53 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.53 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.53 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.53
#16 25.53 deps-turbojpeg:
#16 25.53
#16 25.53 jar-turbojpeg:
#16 25.73 [echo] isSnapshot = true
#16 25.90
#16 25.90 init-title:
#16 25.90 [echo] ----------=========== turbojpeg ===========----------
#16 25.90
#16 25.90 init-timestamp:
#16 25.90
#16 25.90 init:
#16 25.90
#16 25.90 copy-resources:
#16 25.90
#16 25.90 compile:
#16 25.91 [resolver:resolve] Resolving artifacts
#16 25.92
#16 25.92 jar:
#16 25.92 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 25.93 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 25.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 25.93 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.94 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.94
#16 25.94 deps-formats-bsd:
#16 25.94
#16 25.94 jar-formats-bsd:
#16 26.03 [echo] isSnapshot = true
#16 26.19
#16 26.19 init-title:
#16 26.19 [echo] ----------=========== formats-bsd ===========----------
#16 26.19
#16 26.19 init-timestamp:
#16 26.19
#16 26.19 init:
#16 26.19
#16 26.19 copy-resources:
#16 26.19
#16 26.19 compile:
#16 26.41 [resolver:resolve] Resolving artifacts
#16 26.43
#16 26.43 formats-bsd.jar:
#16 26.47 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.48 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.48 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.48
#16 26.48 deps-formats-gpl:
#16 26.48
#16 26.48 jar-formats-gpl:
#16 26.59 [echo] isSnapshot = true
#16 26.77
#16 26.77 init-title:
#16 26.77 [echo] ----------=========== formats-gpl ===========----------
#16 26.77
#16 26.77 init-timestamp:
#16 26.77
#16 26.77 init:
#16 26.77
#16 26.77 copy-resources:
#16 26.77
#16 26.77 compile:
#16 27.03 [resolver:resolve] Resolving artifacts
#16 27.06
#16 27.06 formats-gpl.jar:
#16 27.11 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.12 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.12 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.13 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.13
#16 27.13 deps-bio-formats-plugins:
#16 27.13
#16 27.13 jar-bio-formats-plugins:
#16 27.24 [echo] isSnapshot = true
#16 27.41
#16 27.41 init-title:
#16 27.41 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.41
#16 27.41 init-timestamp:
#16 27.41
#16 27.41 init:
#16 27.41
#16 27.41 copy-resources:
#16 27.41
#16 27.41 compile:
#16 27.67 [resolver:resolve] Resolving artifacts
#16 27.68
#16 27.68 bio-formats-plugins.jar:
#16 27.70 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.70 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.71 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.71
#16 27.71 deps-bio-formats-tools:
#16 27.71
#16 27.71 jar-bio-formats-tools:
#16 27.80 [echo] isSnapshot = true
#16 27.97
#16 27.97 init-title:
#16 27.97 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.97
#16 27.97 init-timestamp:
#16 27.97
#16 27.97 init:
#16 27.97
#16 27.97 copy-resources:
#16 27.97
#16 27.97 compile:
#16 28.20 [resolver:resolve] Resolving artifacts
#16 28.21
#16 28.21 bio-formats-tools.jar:
#16 28.22 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.22 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.23 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.23
#16 28.23 deps-tests:
#16 28.23
#16 28.23 jar-tests:
#16 28.33 [echo] isSnapshot = true
#16 28.49
#16 28.49 init-title:
#16 28.49 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.49
#16 28.49 init-timestamp:
#16 28.50
#16 28.50 init:
#16 28.50
#16 28.50 copy-resources:
#16 28.50
#16 28.50 compile:
#16 28.76 [resolver:resolve] Resolving artifacts
#16 28.77
#16 28.77 tests.jar:
#16 28.78 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.79 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.79 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.79 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.79
#16 28.79 jars:
#16 28.79
#16 28.79 tools:
#16 28.79 [echo] ----------=========== bioformats_package ===========----------
#16 28.89 [echo] isSnapshot = true
#16 29.11
#16 29.11 init-timestamp:
#16 29.11
#16 29.11 bundle:
#16 29.35 [resolver:resolve] Resolving artifacts
#16 29.36 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.44 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.44 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.53 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.58 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.59 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.84 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.91 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.98 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.78 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.78 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.92 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.93 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.08 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.18 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.22 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.75 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.97 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.34 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.40 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.51 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.12 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.13 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.25 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.32 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.33 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.49 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.53 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.54 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.57 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.99 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.11 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.43 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.01 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.02 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.09 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.09 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.09
#16 41.09 BUILD SUCCESSFUL
#16 41.09 Total time: 39 seconds
#16 DONE 41.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.3s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.6s done
#18 writing image sha256:081e416b9a8ab0fe169c0eb6f0f12c6fb5637c8f048065d58531c5b42ad25238 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.7s
Finished: SUCCESS
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