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Full Log#14 505.6 Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 3.8 MB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar (14 MB at 19 MB/s)
#14 506.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 506.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 99 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 509.1 [[1;34mINFO[m]
#14 509.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
#14 509.1 [[1;34mINFO[m]
#14 509.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 509.1 [[1;34mINFO[m]
#14 509.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 509.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 509.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 509.1 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601677950
#14 509.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 509.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 509.1
#14 509.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 509.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 509.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 509.1 [[1;34mINFO[m]
#14 509.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 509.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 509.1 [[1;34mINFO[m] Copying 2 resources
#14 509.1 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 509.1 [[1;34mINFO[m] Copying 0 resource
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#14 509.1 [[1;34mINFO[m]
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#14 509.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 509.2 [[1;34mINFO[m] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 512.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 512.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 512.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 512.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 512.9 [[1;34mINFO[m]
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#14 512.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 512.9 [[1;34mINFO[m] Copying 24 resources
#14 512.9 [[1;34mINFO[m]
#14 512.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-gpl[0;1m ---[m
#14 512.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 512.9 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 513.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 513.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 513.2 [[1;34mINFO[m]
#14 513.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 513.2 [[1;34mINFO[m]
#14 513.2 [[1;34mINFO[m] -------------------------------------------------------
#14 513.2 [[1;34mINFO[m] T E S T S
#14 513.2 [[1;34mINFO[m] -------------------------------------------------------
#14 513.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 517.4 2025-06-11 00:28:06,289 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3e1162e7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 517.4 2025-06-11 00:28:06,294 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5c84624f reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 517.5 2025-06-11 00:28:06,419 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5e8a459 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 517.5 2025-06-11 00:28:06,420 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@43d455c9 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 517.6 2025-06-11 00:28:06,529 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5b56b654 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 517.7 2025-06-11 00:28:06,529 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@452c8a40 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 517.8 2025-06-11 00:28:06,638 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@72be135f reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 517.8 2025-06-11 00:28:06,638 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@75b21c3b reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 517.8 2025-06-11 00:28:06,723 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@9f6e406 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 517.8 2025-06-11 00:28:06,724 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@400d912a reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 518.0 2025-06-11 00:28:06,926 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6a714237 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 518.1 2025-06-11 00:28:06,926 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@349d0836 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 518.2 2025-06-11 00:28:07,053 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@47b2e9e1 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 518.2 2025-06-11 00:28:07,054 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@59712875 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 518.3 2025-06-11 00:28:07,163 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4bdc8b5d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 518.3 2025-06-11 00:28:07,163 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5d1e09bc reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 519.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.383 s - in [1mTestSuite[m
#14 519.5 [[1;34mINFO[m]
#14 519.5 [[1;34mINFO[m] Results:
#14 519.5 [[1;34mINFO[m]
#14 519.5 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 519.5 [[1;34mINFO[m]
#14 519.5 [[1;34mINFO[m]
#14 519.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 519.5 [[1;34mINFO[m]
#14 519.5 [[1;34mINFO[m] -------------------------------------------------------
#14 519.5 [[1;34mINFO[m] T E S T S
#14 519.5 [[1;34mINFO[m] -------------------------------------------------------
#14 520.1 [[1;34mINFO[m] Running [1mTestSuite[m
#14 521.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.288 s - in [1mTestSuite[m
#14 521.7 [[1;34mINFO[m]
#14 521.7 [[1;34mINFO[m] Results:
#14 521.7 [[1;34mINFO[m]
#14 521.7 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 521.7 [[1;34mINFO[m]
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#14 521.7 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 521.7 [[1;34mINFO[m]
#14 521.7 [[1;34mINFO[m] -------------------------------------------------------
#14 521.7 [[1;34mINFO[m] T E S T S
#14 521.7 [[1;34mINFO[m] -------------------------------------------------------
#14 522.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 523.5 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.242 s - in [1mTestSuite[m
#14 523.9 [[1;34mINFO[m]
#14 523.9 [[1;34mINFO[m] Results:
#14 523.9 [[1;34mINFO[m]
#14 523.9 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 523.9 [[1;34mINFO[m]
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#14 523.9 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 523.9 [[1;34mINFO[m]
#14 523.9 [[1;34mINFO[m] -------------------------------------------------------
#14 523.9 [[1;34mINFO[m] T E S T S
#14 523.9 [[1;34mINFO[m] -------------------------------------------------------
#14 524.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 525.5 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.22 s - in [1mTestSuite[m
#14 525.9 [[1;34mINFO[m]
#14 525.9 [[1;34mINFO[m] Results:
#14 525.9 [[1;34mINFO[m]
#14 525.9 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 525.9 [[1;34mINFO[m]
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#14 525.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 526.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT.jar
#14 526.3 [[1;34mINFO[m]
#14 526.3 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 526.3 [[1;34mINFO[m]
#14 526.3 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 526.3 [[1;34mINFO[m]
#14 526.3 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 526.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 526.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 526.3 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601695163
#14 526.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 526.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 526.3
#14 526.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 526.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 526.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 526.4 [[1;34mINFO[m]
#14 526.4 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 526.4 [[1;34mINFO[m]
#14 526.4 [[1;34mINFO[m]
#14 526.4 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 526.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT-sources.jar
#14 526.7 [[1;34mINFO[m]
#14 526.7 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 526.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT-tests.jar
#14 527.0 [[1;34mINFO[m]
#14 527.0 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 527.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar
#14 527.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.pom
#14 527.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT-sources.jar
#14 527.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.3.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT-tests.jar
#14 527.0 [[1;34mINFO[m]
#14 527.0 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 527.0 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.3.0-SNAPSHOT [17/24][m
#14 527.0 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 527.0 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
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#14 527.1 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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#14 527.3 [[1;34mINFO[m]
#14 527.3 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 527.3 [[1;34mINFO[m]
#14 527.3 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 527.3 [[1;34mINFO[m]
#14 527.3 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 527.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 527.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 527.3 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601696157
#14 527.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 527.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 527.4
#14 527.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 527.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 527.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 527.4 [[1;34mINFO[m]
#14 527.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 527.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 527.4 [[1;34mINFO[m] Copying 3 resources
#14 527.4 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 527.4 [[1;34mINFO[m] Copying 0 resource
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#14 527.4 [[1;34mINFO[m]
#14 527.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 527.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 527.4 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 528.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 528.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 528.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 528.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 528.2 [[1;34mINFO[m]
#14 528.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 528.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 528.2 [[1;34mINFO[m] Copying 1 resource
#14 528.2 [[1;34mINFO[m]
#14 528.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 528.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 528.2 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 528.5 [[1;34mINFO[m]
#14 528.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 528.5 [[1;34mINFO[m]
#14 528.5 [[1;34mINFO[m] -------------------------------------------------------
#14 528.5 [[1;34mINFO[m] T E S T S
#14 528.5 [[1;34mINFO[m] -------------------------------------------------------
#14 528.9 [[1;34mINFO[m] Running [1mTestSuite[m
#14 532.0 Warning: Data has too many channels for Colorized color mode
#14 532.2 Warning: Data has too many channels for Colorized color mode
#14 532.4 Warning: Data has too many channels for Colorized color mode
#14 532.6 Warning: Data has too many channels for Colorized color mode
#14 532.8 Warning: Data has too many channels for Colorized color mode
#14 532.9 Warning: Data has too many channels for Colorized color mode
#14 533.0 Warning: Data has too many channels for Colorized color mode
#14 533.0 Warning: Data has too many channels for Colorized color mode
#14 533.2 Warning: Data has too many channels for Composite color mode
#14 533.2 Warning: Data has too many channels for Composite color mode
#14 534.0 Warning: Data has too many channels for Composite color mode
#14 534.0 Warning: Data has too many channels for Composite color mode
#14 534.0 Warning: Data has too many channels for Composite color mode
#14 534.1 Warning: Data has too many channels for Composite color mode
#14 534.1 Warning: Data has too many channels for Composite color mode
#14 534.1 Warning: Data has too many channels for Composite color mode
#14 534.1 Warning: Data has too many channels for Composite color mode
#14 534.1 Warning: Data has too many channels for Composite color mode
#14 534.2 Warning: Data has too many channels for Composite color mode
#14 534.2 Warning: Data has too many channels for Composite color mode
#14 534.2 Warning: Data has too many channels for Composite color mode
#14 534.2 Warning: Data has too many channels for Composite color mode
#14 534.3 Warning: Data has too many channels for Composite color mode
#14 534.3 Warning: Data has too many channels for Composite color mode
#14 534.3 Warning: Data has too many channels for Composite color mode
#14 534.3 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.1 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.2 Warning: Data has too many channels for Composite color mode
#14 535.3 Warning: Data has too many channels for Composite color mode
#14 535.3 Warning: Data has too many channels for Composite color mode
#14 535.3 Warning: Data has too many channels for Composite color mode
#14 535.3 Warning: Data has too many channels for Composite color mode
#14 535.4 Warning: Data has too many channels for Composite color mode
#14 535.4 Warning: Data has too many channels for Composite color mode
#14 536.1 Warning: Data has too many channels for Composite color mode
#14 536.1 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.2 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.3 Warning: Data has too many channels for Composite color mode
#14 536.4 Warning: Data has too many channels for Composite color mode
#14 536.9 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.0 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.1 Warning: Data has too many channels for Composite color mode
#14 537.2 Warning: Data has too many channels for Composite color mode
#14 537.2 Warning: Data has too many channels for Composite color mode
#14 537.2 Warning: Data has too many channels for Composite color mode
#14 537.2 Warning: Data has too many channels for Custom color mode
#14 537.3 Warning: Data has too many channels for Custom color mode
#14 537.3 Warning: Data has too many channels for Custom color mode
#14 537.3 Warning: Data has too many channels for Custom color mode
#14 537.4 Warning: Data has too many channels for Custom color mode
#14 537.4 Warning: Data has too many channels for Custom color mode
#14 537.5 Warning: Data has too many channels for Custom color mode
#14 537.5 Warning: Data has too many channels for Custom color mode
#14 537.5 Warning: Data has too many channels for Default color mode
#14 537.6 Warning: Data has too many channels for Default color mode
#14 537.6 Warning: Data has too many channels for Default color mode
#14 537.6 Warning: Data has too many channels for Default color mode
#14 537.7 Warning: Data has too many channels for Default color mode
#14 537.7 Warning: Data has too many channels for Default color mode
#14 537.8 Warning: Data has too many channels for Default color mode
#14 537.8 Warning: Data has too many channels for Default color mode
#14 537.8 Warning: Data has too many channels for Default color mode
#14 537.9 Warning: Data has too many channels for Default color mode
#14 537.9 Warning: Data has too many channels for Default color mode
#14 538.0 Warning: Data has too many channels for Default color mode
#14 538.0 Warning: Data has too many channels for Default color mode
#14 538.0 Warning: Data has too many channels for Default color mode
#14 538.1 Warning: Data has too many channels for Default color mode
#14 538.1 Warning: Data has too many channels for Default color mode
#14 538.2 Warning: Data has too many channels for Grayscale color mode
#14 538.2 Warning: Data has too many channels for Grayscale color mode
#14 538.2 Warning: Data has too many channels for Grayscale color mode
#14 538.3 Warning: Data has too many channels for Grayscale color mode
#14 538.3 Warning: Data has too many channels for Grayscale color mode
#14 538.4 Warning: Data has too many channels for Grayscale color mode
#14 538.4 Warning: Data has too many channels for Grayscale color mode
#14 538.4 Warning: Data has too many channels for Grayscale color mode
#14 538.5 Warning: Data has too many channels for Colorized color mode
#14 538.5 Warning: Data has too many channels for Colorized color mode
#14 538.5 Warning: Data has too many channels for Colorized color mode
#14 539.8 Warning: Data has too many channels for Default color mode
#14 540.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.308 s - in [1mTestSuite[m
#14 540.6 [[1;34mINFO[m]
#14 540.6 [[1;34mINFO[m] Results:
#14 540.6 [[1;34mINFO[m]
#14 540.6 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 540.6 [[1;34mINFO[m]
#14 540.6 [[1;34mINFO[m]
#14 540.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 540.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#14 540.9 [[1;34mINFO[m]
#14 540.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 540.9 [[1;34mINFO[m]
#14 540.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 540.9 [[1;34mINFO[m]
#14 540.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 541.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 541.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 541.0 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601709835
#14 541.0 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 541.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 541.0
#14 541.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 541.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 541.0 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 541.0 [[1;34mINFO[m]
#14 541.0 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 541.0 [[1;34mINFO[m]
#14 541.0 [[1;34mINFO[m]
#14 541.0 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 541.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT-sources.jar
#14 541.3 [[1;34mINFO[m]
#14 541.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 541.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT-tests.jar
#14 541.4 [[1;34mINFO[m]
#14 541.4 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 541.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#14 541.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.pom
#14 541.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT-sources.jar
#14 541.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.3.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT-tests.jar
#14 541.4 [[1;34mINFO[m]
#14 541.4 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 541.4 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.3.0-SNAPSHOT [18/24][m
#14 541.4 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 541.4 [[1;34mINFO[m]
#14 541.4 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.4 [[1;34mINFO[m]
#14 541.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.4 [[1;34mINFO[m]
#14 541.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 541.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 541.4 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601710309
#14 541.5 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 541.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 541.5
#14 541.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 541.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 541.5 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 541.5 [[1;34mINFO[m]
#14 541.5 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.5 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 541.5 [[1;34mINFO[m] Copying 0 resource
#14 541.5 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 541.5 [[1;34mINFO[m] Copying 0 resource
#14 541.5 [[1;34mINFO[m] Copying 0 resource
#14 541.5 [[1;34mINFO[m]
#14 541.5 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.5 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 541.5 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 541.8 [[1;34mINFO[m]
#14 541.8 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.8 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 541.8 [[1;34mINFO[m] Copying 1 resource
#14 541.8 [[1;34mINFO[m]
#14 541.8 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 541.8 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 541.8 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 541.9 [[1;34mINFO[m]
#14 541.9 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 542.0 [[1;34mINFO[m]
#14 542.0 [[1;34mINFO[m] -------------------------------------------------------
#14 542.0 [[1;34mINFO[m] T E S T S
#14 542.0 [[1;34mINFO[m] -------------------------------------------------------
#14 542.5 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 661.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 118.838 s - in loci.formats.tools.[1mImageConverterTest[m
#14 661.8 [[1;34mINFO[m]
#14 661.8 [[1;34mINFO[m] Results:
#14 661.8 [[1;34mINFO[m]
#14 661.8 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 661.8 [[1;34mINFO[m]
#14 661.8 [[1;34mINFO[m]
#14 661.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 661.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT.jar
#14 661.9 [[1;34mINFO[m]
#14 661.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 661.9 [[1;34mINFO[m]
#14 661.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 661.9 [[1;34mINFO[m]
#14 661.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 661.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 661.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 661.9 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601830778
#14 661.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 661.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 661.9
#14 661.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 661.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 662.0 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 662.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT-sources.jar
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 662.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT-tests.jar
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 662.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar
#14 662.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.pom
#14 662.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT-sources.jar
#14 662.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.3.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT-tests.jar
#14 662.0 [[1;34mINFO[m]
#14 662.0 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 662.0 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.3.0-SNAPSHOT [19/24][m
#14 662.0 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 662.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
#14 662.1 Progress (1): 4.1/16 kB
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#14 662.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
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#14 662.1 [[1;34mINFO[m]
#14 662.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 662.1 [[1;34mINFO[m]
#14 662.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 662.1 [[1;34mINFO[m]
#14 662.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 662.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 662.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 662.2 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601831017
#14 662.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 662.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 662.2
#14 662.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 662.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 662.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 662.2 [[1;34mINFO[m]
#14 662.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 662.2 [[1;34mINFO[m]
#14 662.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 662.2 [[1;34mINFO[m]
#14 662.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 662.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 662.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 662.3 [[1;34mINFO[m] Storing buildNumber: e06c130bc55304d6cbb1355cf55ca194ee262674 at timestamp: 1749601831112
#14 662.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 662.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 662.3
#14 662.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 662.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 662.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 662.3 [[1;34mINFO[m]
#14 662.3 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m <<<[m
#14 662.3 [[1;34mINFO[m]
#14 662.3 [[1;34mINFO[m]
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#14 662.3 [[1;34mINFO[m]
#14 662.3 [[1;34mINFO[m] [1m--- [0;32mmaven-assembly-plugin:3.1.0:single[m [1m(make-assembly)[m @ [36mbioformats_package[0;1m ---[m
#14 662.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.pom
#14 662.3 Progress (1): 4.1/7.6 kB
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#14 662.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.jar
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#14 662.4 [output clipped, log limit 2MiB reached]
#14 992.4 SLF4J: No SLF4J providers were found.
#14 992.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 992.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 1005.7s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 1.785 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.783 [echo] isSnapshot = true
#16 3.145
#16 3.145 copy-jars:
#16 3.145
#16 3.145 deps-formats-api:
#16 3.489 [echo] isSnapshot = true
#16 3.640
#16 3.640 install-pom:
#16 4.049 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/pom-bio-formats-8.3.0-SNAPSHOT.pom
#16 4.080 [resolver:install] Installing ome:pom-bio-formats:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 4.093 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 4.105
#16 4.105 jar-formats-api:
#16 4.427 [echo] isSnapshot = true
#16 5.032
#16 5.032 init-title:
#16 5.033 [echo] ----------=========== formats-api ===========----------
#16 5.033
#16 5.033 init-timestamp:
#16 5.058
#16 5.058 init:
#16 5.058
#16 5.058 copy-resources:
#16 5.060 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 5.117 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 5.129
#16 5.129 compile:
#16 5.660 [resolver:resolve] Resolving artifacts
#16 5.753 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 6.409 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.527 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.528 [javac] import loci.common.ReflectedUniverse;
#16 8.528 [javac] ^
#16 9.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.340 [javac] int currentIndex = r.getCoreIndex();
#16 9.340 [javac] ^
#16 9.340 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.340 [javac] r.setCoreIndex(coreIndex);
#16 9.340 [javac] ^
#16 9.340 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.340 [javac] r.setCoreIndex(currentIndex);
#16 9.340 [javac] ^
#16 9.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.946 [javac] public void setCoreIndex(int no) {
#16 9.946 [javac] ^
#16 9.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.946 [javac] public int getCoreIndex() {
#16 9.946 [javac] ^
#16 9.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.946 [javac] public int coreIndexToSeries(int index)
#16 9.946 [javac] ^
#16 9.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.948 [javac] public int seriesToCoreIndex(int series)
#16 9.948 [javac] ^
#16 9.948 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.948 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 9.948 [javac] ^
#16 10.15 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.15 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 10.15 [javac] ^
#16 10.15 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.15 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 10.15 [javac] ^
#16 10.15 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.15 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.15 [javac] ^
#16 10.15 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.15 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 10.15 [javac] ^
#16 10.45 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.45 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 10.45 [javac] ^
#16 10.45 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.45 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 10.45 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.86 [javac] public void setCoreIndex(int no) {
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.86 [javac] public int getCoreIndex() {
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.86 [javac] public int coreIndexToSeries(int index) {
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.86 [javac] public int seriesToCoreIndex(int series) {
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.86 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.86 [javac] return getReader().getCoreMetadataList();
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.86 [javac] return getReader().getCoreIndex();
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.86 [javac] getReader().setCoreIndex(no);
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.86 [javac] return getReader().seriesToCoreIndex(series);
#16 10.86 [javac] ^
#16 10.86 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.86 [javac] return getReader().coreIndexToSeries(index);
#16 10.86 [javac] ^
#16 11.06 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 11.06 [javac] public void setCoreIndex(int no) {
#16 11.06 [javac] ^
#16 11.06 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 11.06 [javac] public int getCoreIndex() {
#16 11.06 [javac] ^
#16 11.06 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 11.06 [javac] public int coreIndexToSeries(int index) {
#16 11.06 [javac] ^
#16 11.06 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 11.06 [javac] public int seriesToCoreIndex(int series) {
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.07 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.07 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 11.07 [javac] return reader.getCoreIndex();
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 11.07 [javac] reader.setCoreIndex(no);
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 11.07 [javac] return reader.seriesToCoreIndex(series);
#16 11.07 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 11.07 [javac] return reader.coreIndexToSeries(index);
#16 11.07 [javac] ^
#16 11.57 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.57 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.57 [javac] 36 warnings
#16 11.59
#16 11.59 formats-api.jar:
#16 11.59 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 11.65 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 11.72 [resolver:install] Using default POM (ome:formats-api:8.3.0-SNAPSHOT)
#16 11.72 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.pom
#16 11.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar
#16 11.86 [resolver:install] Installing ome:formats-api:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 11.87 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 11.87
#16 11.87 deps-turbojpeg:
#16 11.87
#16 11.87 jar-turbojpeg:
#16 12.07 [echo] isSnapshot = true
#16 12.39
#16 12.39 init-title:
#16 12.39 [echo] ----------=========== turbojpeg ===========----------
#16 12.39
#16 12.39 init-timestamp:
#16 12.39
#16 12.39 init:
#16 12.39
#16 12.39 copy-resources:
#16 12.40 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 12.40
#16 12.40 compile:
#16 12.42 [resolver:resolve] Resolving artifacts
#16 12.43 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 12.96 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.39 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 15.39 [javac] protected void finalize() throws Throwable {
#16 15.39 [javac] ^
#16 15.39 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 15.39 [javac] super.finalize();
#16 15.39 [javac] ^
#16 15.50 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 15.50 [javac] protected void finalize() throws Throwable {
#16 15.50 [javac] ^
#16 15.50 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 15.50 [javac] super.finalize();
#16 15.50 [javac] ^
#16 15.50 [javac] 5 warnings
#16 15.53
#16 15.53 jar:
#16 15.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 15.81 [resolver:install] Using default POM (ome:turbojpeg:8.3.0-SNAPSHOT)
#16 15.84 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.pom
#16 15.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar
#16 15.91 [resolver:install] Installing ome:turbojpeg:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 15.91 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 15.91
#16 15.91 deps-formats-bsd:
#16 15.92
#16 15.92 jar-formats-bsd:
#16 16.12 [echo] isSnapshot = true
#16 16.46
#16 16.46 init-title:
#16 16.46 [echo] ----------=========== formats-bsd ===========----------
#16 16.46
#16 16.46 init-timestamp:
#16 16.46
#16 16.46 init:
#16 16.46
#16 16.46 copy-resources:
#16 16.46 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 16.48 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 16.48
#16 16.48 compile:
#16 17.12 [resolver:resolve] Resolving artifacts
#16 17.24 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 17.89 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.12 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.12 [javac] import loci.common.ReflectedUniverse;
#16 21.12 [javac] ^
#16 22.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.43 [javac] core.size() != reader.getCoreMetadataList().size())
#16 22.43 [javac] ^
#16 22.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.43 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 22.43 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] int n = reader.getCoreMetadataList().size();
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.53 [javac] reader.setCoreIndex(coreIndex);
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] int n = reader.getCoreMetadataList().size();
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] int n = reader.getCoreMetadataList().size();
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 22.53 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] int n = reader.getCoreMetadataList().size();
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 22.53 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] int n = reader.getCoreMetadataList().size();
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.53 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.53 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.53 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.53 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 22.53 [javac] ^
#16 22.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.54 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 22.54 [javac] ^
#16 22.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.54 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 22.54 [javac] ^
#16 22.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.54 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 22.54 [javac] ^
#16 22.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.54 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 22.54 [javac] ^
#16 22.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.54 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 22.54 [javac] ^
#16 22.94 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 22.94 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 22.94 [javac] ^
#16 23.45 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 23.45 [javac] BitWriter out = new BitWriter();
#16 23.45 [javac] ^
#16 23.45 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 23.45 [javac] BitWriter out = new BitWriter();
#16 23.45 [javac] ^
#16 23.75 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 23.75 [javac] return new Double(v);
#16 23.75 [javac] ^
#16 25.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.47 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 25.47 [javac] ^
#16 25.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.47 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 25.47 [javac] ^
#16 25.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 25.47 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 25.47 [javac] ^
#16 25.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 25.77 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 25.77 [javac] ^
#16 26.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 26.18 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 26.18 [javac] ^
#16 26.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 26.28 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 26.28 [javac] ^
#16 26.58 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 26.58 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 26.58 [javac] ^
#16 26.58 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 26.58 [javac] protected ReflectedUniverse r;
#16 26.58 [javac] ^
#16 26.58 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 26.58 [javac] r = new ReflectedUniverse();
#16 26.58 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 26.69 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 26.69 [javac] ^
#16 26.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 26.69 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 26.69 [javac] ^
#16 26.79 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 26.79 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 26.79 [javac] ^
#16 26.79 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 26.79 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 26.79 [javac] ^
#16 26.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 26.89 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 26.89 [javac] ^
#16 26.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 26.89 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 26.89 [javac] ^
#16 26.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 26.89 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 26.89 [javac] ^
#16 26.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 26.89 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 26.89 [javac] ^
#16 26.99 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 26.99 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 26.99 [javac] ^
#16 27.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 27.09 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 27.09 [javac] ^
#16 27.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 27.09 [javac] result[i] = new Double(readNumber().doubleValue());
#16 27.09 [javac] ^
#16 27.19 [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.19 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.19 [javac] 50 warnings
#16 27.19
#16 27.19 formats-bsd.jar:
#16 27.21 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 27.43 [resolver:install] Using default POM (ome:formats-bsd:8.3.0-SNAPSHOT)
#16 27.43 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.pom
#16 27.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar
#16 27.49 [resolver:install] Installing ome:formats-bsd:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 27.49 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.49
#16 27.49 deps-formats-gpl:
#16 27.49
#16 27.49 jar-formats-gpl:
#16 27.66 [echo] isSnapshot = true
#16 27.93
#16 27.93 init-title:
#16 27.93 [echo] ----------=========== formats-gpl ===========----------
#16 27.93
#16 27.93 init-timestamp:
#16 27.93
#16 27.93 init:
#16 27.93
#16 27.93 copy-resources:
#16 27.93 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 27.94 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 27.94
#16 27.94 compile:
#16 29.32 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 29.93 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 30.33 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 30.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 30.50 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 30.62 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 30.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 30.85 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 30.97 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 31.07 [resolver:resolve] Resolving artifacts
#16 31.11 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 31.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 31.29 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 31.29 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 31.64 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 31.65 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 31.70 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 32.43 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 36.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 36.17 [javac] import loci.formats.codec.BitWriter;
#16 36.17 [javac] ^
#16 36.37 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 36.37 [javac] import loci.formats.codec.BitWriter;
#16 36.37 [javac] ^
#16 42.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 42.03 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 42.03 [javac] ^
#16 42.03 [javac] cast to Object for a varargs call
#16 42.03 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 42.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 42.13 [javac] BitWriter bits = null;
#16 42.13 [javac] ^
#16 42.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 42.13 [javac] bits = new BitWriter(planes[index].length / 8);
#16 42.13 [javac] ^
#16 42.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 42.84 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 42.84 [javac] ^
#16 43.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 43.54 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 43.54 [javac] ^
#16 43.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 43.54 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 43.54 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 44.15 [javac] Variable variable = group.findVariable(variableName);
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 44.15 [javac] Variable variable = group.findVariable(variableName);
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 44.15 [javac] List<Attribute> attributes = variable.getAttributes();
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 44.15 [javac] String groupName = group.getName();
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 44.15 [javac] List<Attribute> attributes = group.getAttributes();
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 44.15 [javac] String variableName = variable.getName();
#16 44.15 [javac] ^
#16 44.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 44.15 [javac] Group nextParent = parent.findGroup(token);
#16 44.15 [javac] ^
#16 44.15 [javac] Note: Some input files use unchecked or unsafe operations.
#16 44.15 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 44.15 [javac] 16 warnings
#16 44.18
#16 44.18 formats-gpl.jar:
#16 44.20 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 44.42 [resolver:install] Using default POM (ome:formats-gpl:8.3.0-SNAPSHOT)
#16 44.43 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.pom
#16 44.44 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar
#16 44.44 [resolver:install] Installing ome:formats-gpl:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 44.44 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 44.44
#16 44.44 deps-bio-formats-plugins:
#16 44.44
#16 44.44 jar-bio-formats-plugins:
#16 44.61 [echo] isSnapshot = true
#16 44.88
#16 44.88 init-title:
#16 44.88 [echo] ----------=========== bio-formats_plugins ===========----------
#16 44.88
#16 44.88 init-timestamp:
#16 44.88
#16 44.88 init:
#16 44.88
#16 44.88 copy-resources:
#16 44.88 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 44.89 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 44.89
#16 44.89 compile:
#16 45.64 [resolver:resolve] Resolving artifacts
#16 45.67 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 46.19 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 48.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 48.61 [javac] import loci.common.ReflectedUniverse;
#16 48.61 [javac] ^
#16 48.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 48.61 [javac] import loci.common.ReflectedUniverse;
#16 48.61 [javac] ^
#16 50.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 50.23 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 50.23 [javac] ^
#16 50.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 50.73 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 50.73 [javac] ^
#16 50.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 50.73 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 50.73 [javac] ^
#16 51.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 51.23 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 51.23 [javac] ^
#16 51.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 51.23 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 51.23 [javac] ^
#16 52.22 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 52.22 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 52.22 [javac] 8 warnings
#16 52.23
#16 52.23 bio-formats-plugins.jar:
#16 52.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 52.28 [resolver:install] Using default POM (ome:bio-formats_plugins:8.3.0-SNAPSHOT)
#16 52.28 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.pom
#16 52.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#16 52.34 [resolver:install] Installing ome:bio-formats_plugins:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 52.34 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 52.34
#16 52.34 deps-bio-formats-tools:
#16 52.34
#16 52.34 jar-bio-formats-tools:
#16 52.51 [echo] isSnapshot = true
#16 52.73
#16 52.73 init-title:
#16 52.73 [echo] ----------=========== bio-formats-tools ===========----------
#16 52.73
#16 52.73 init-timestamp:
#16 52.73
#16 52.73 init:
#16 52.73
#16 52.73 copy-resources:
#16 52.73 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 52.73
#16 52.73 compile:
#16 53.57 [resolver:resolve] Resolving artifacts
#16 53.62 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 54.34 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 58.19 [javac] 1 warning
#16 58.24
#16 58.24 bio-formats-tools.jar:
#16 58.24 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 58.25 [resolver:install] Using default POM (ome:bio-formats-tools:8.3.0-SNAPSHOT)
#16 58.26 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.pom
#16 58.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar
#16 58.27 [resolver:install] Installing ome:bio-formats-tools:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 58.27 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 58.27
#16 58.27 deps-tests:
#16 58.27
#16 58.27 jar-tests:
#16 58.42 [echo] isSnapshot = true
#16 58.67
#16 58.67 init-title:
#16 58.68 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 58.68
#16 58.68 init-timestamp:
#16 58.68
#16 58.68 init:
#16 58.68
#16 58.68 copy-resources:
#16 58.68 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 58.68
#16 58.68 compile:
#16 59.44 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 59.66 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 60.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 60.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 60.82 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 61.46 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 61.48 [resolver:resolve] Resolving artifacts
#16 61.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 61.64 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 61.99 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 62.00 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 62.41 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 63.22 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 63.23 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 63.85 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 66.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 66.98 [javac] int index = unflattenedReader.getCoreIndex();
#16 66.98 [javac] ^
#16 66.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 66.98 [javac] reader.setCoreIndex(index);
#16 66.98 [javac] ^
#16 67.69 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2336: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 67.69 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 67.69 [javac] ^
#16 67.69 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2502: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 67.69 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 67.69 [javac] ^
#16 68.50 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 68.50 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 68.50 [javac] ^
#16 68.50 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 68.50 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 68.50 [javac] ^
#16 68.70 [javac] Note: Some input files use unchecked or unsafe operations.
#16 68.70 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 68.70 [javac] 7 warnings
#16 68.71
#16 68.71 tests.jar:
#16 68.72 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 68.74 [resolver:install] Using default POM (ome:test-suite:8.3.0-SNAPSHOT)
#16 68.74 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.pom
#16 68.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.jar
#16 68.74 [resolver:install] Installing ome:test-suite:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 68.75 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 68.75
#16 68.75 jars:
#16 68.75
#16 68.75 copy-jars:
#16 68.75
#16 68.75 deps-formats-api:
#16 68.82 [echo] isSnapshot = true
#16 68.88
#16 68.88 install-pom:
#16 69.06 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/pom-bio-formats-8.3.0-SNAPSHOT.pom
#16 69.06 [resolver:install] Installing ome:pom-bio-formats:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 69.06 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 69.06
#16 69.06 jar-formats-api:
#16 69.25 [echo] isSnapshot = true
#16 69.56
#16 69.56 init-title:
#16 69.56 [echo] ----------=========== formats-api ===========----------
#16 69.56
#16 69.56 init-timestamp:
#16 69.56
#16 69.56 init:
#16 69.57
#16 69.57 copy-resources:
#16 69.57
#16 69.57 compile:
#16 69.83 [resolver:resolve] Resolving artifacts
#16 69.85
#16 69.85 formats-api.jar:
#16 69.89 [resolver:install] Using default POM (ome:formats-api:8.3.0-SNAPSHOT)
#16 69.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.pom
#16 69.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar
#16 69.92 [resolver:install] Installing ome:formats-api:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 69.92 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 69.92
#16 69.92 deps-turbojpeg:
#16 69.92
#16 69.92 jar-turbojpeg:
#16 70.07 [echo] isSnapshot = true
#16 70.27
#16 70.27 init-title:
#16 70.27 [echo] ----------=========== turbojpeg ===========----------
#16 70.27
#16 70.27 init-timestamp:
#16 70.28
#16 70.28 init:
#16 70.28
#16 70.28 copy-resources:
#16 70.28
#16 70.28 compile:
#16 70.29 [resolver:resolve] Resolving artifacts
#16 70.29
#16 70.29 jar:
#16 70.30 [resolver:install] Using default POM (ome:turbojpeg:8.3.0-SNAPSHOT)
#16 70.31 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.pom
#16 70.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar
#16 70.32 [resolver:install] Installing ome:turbojpeg:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 70.32 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 70.33
#16 70.33 deps-formats-bsd:
#16 70.33
#16 70.33 jar-formats-bsd:
#16 70.46 [echo] isSnapshot = true
#16 70.65
#16 70.65 init-title:
#16 70.65 [echo] ----------=========== formats-bsd ===========----------
#16 70.65
#16 70.65 init-timestamp:
#16 70.65
#16 70.65 init:
#16 70.65
#16 70.65 copy-resources:
#16 70.65
#16 70.65 compile:
#16 71.27 [resolver:resolve] Resolving artifacts
#16 71.30
#16 71.30 formats-bsd.jar:
#16 71.37 [resolver:install] Using default POM (ome:formats-bsd:8.3.0-SNAPSHOT)
#16 71.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.pom
#16 71.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar
#16 71.37 [resolver:install] Installing ome:formats-bsd:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 71.38 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 71.38
#16 71.38 deps-formats-gpl:
#16 71.38
#16 71.38 jar-formats-gpl:
#16 71.51 [echo] isSnapshot = true
#16 71.77
#16 71.77 init-title:
#16 71.77 [echo] ----------=========== formats-gpl ===========----------
#16 71.77
#16 71.77 init-timestamp:
#16 71.77
#16 71.77 init:
#16 71.77
#16 71.77 copy-resources:
#16 71.77
#16 71.77 compile:
#16 72.55 [resolver:resolve] Resolving artifacts
#16 72.62
#16 72.62 formats-gpl.jar:
#16 72.70 [resolver:install] Using default POM (ome:formats-gpl:8.3.0-SNAPSHOT)
#16 72.71 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.pom
#16 72.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar
#16 72.72 [resolver:install] Installing ome:formats-gpl:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 72.72 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 72.72
#16 72.72 deps-bio-formats-plugins:
#16 72.72
#16 72.72 jar-bio-formats-plugins:
#16 72.88 [echo] isSnapshot = true
#16 73.08
#16 73.08 init-title:
#16 73.08 [echo] ----------=========== bio-formats_plugins ===========----------
#16 73.08
#16 73.08 init-timestamp:
#16 73.08
#16 73.08 init:
#16 73.08
#16 73.08 copy-resources:
#16 73.08
#16 73.08 compile:
#16 73.74 [resolver:resolve] Resolving artifacts
#16 73.76
#16 73.76 bio-formats-plugins.jar:
#16 73.80 [resolver:install] Using default POM (ome:bio-formats_plugins:8.3.0-SNAPSHOT)
#16 73.80 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.pom
#16 73.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#16 73.81 [resolver:install] Installing ome:bio-formats_plugins:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 73.81 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 73.81
#16 73.81 deps-bio-formats-tools:
#16 73.81
#16 73.81 jar-bio-formats-tools:
#16 73.99 [echo] isSnapshot = true
#16 74.28
#16 74.28 init-title:
#16 74.28 [echo] ----------=========== bio-formats-tools ===========----------
#16 74.28
#16 74.28 init-timestamp:
#16 74.28
#16 74.28 init:
#16 74.28
#16 74.28 copy-resources:
#16 74.28
#16 74.28 compile:
#16 75.17 [resolver:resolve] Resolving artifacts
#16 75.22
#16 75.22 bio-formats-tools.jar:
#16 75.24 [resolver:install] Using default POM (ome:bio-formats-tools:8.3.0-SNAPSHOT)
#16 75.24 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.pom
#16 75.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar
#16 75.24 [resolver:install] Installing ome:bio-formats-tools:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 75.26 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 75.26
#16 75.26 deps-tests:
#16 75.26
#16 75.26 jar-tests:
#16 75.40 [echo] isSnapshot = true
#16 75.63
#16 75.63 init-title:
#16 75.63 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 75.63
#16 75.63 init-timestamp:
#16 75.63
#16 75.63 init:
#16 75.63
#16 75.63 copy-resources:
#16 75.63
#16 75.63 compile:
#16 76.28 [resolver:resolve] Resolving artifacts
#16 76.32
#16 76.32 tests.jar:
#16 76.34 [resolver:install] Using default POM (ome:test-suite:8.3.0-SNAPSHOT)
#16 76.35 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.pom
#16 76.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.jar
#16 76.35 [resolver:install] Installing ome:test-suite:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 76.37 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 76.37
#16 76.37 jars:
#16 76.37
#16 76.37 tools:
#16 76.37 [echo] ----------=========== bioformats_package ===========----------
#16 76.54 [echo] isSnapshot = true
#16 76.79
#16 76.79 init-timestamp:
#16 76.79
#16 76.79 bundle:
#16 77.67 [resolver:resolve] Resolving artifacts
#16 77.69 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 77.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 77.80 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 77.85 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 77.87 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 77.98 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.01 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.09 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.11 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.48 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.57 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.59 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.68 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.70 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.71 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.72 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 78.97 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.78 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.78 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.78 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.79 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.91 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.92 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 79.93 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.11 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.35 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.47 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.53 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.54 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.60 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 80.63 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.34 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.37 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.43 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.54 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.69 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.71 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.75 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 81.76 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.09 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.20 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.29 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.46 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/metakit-5.8.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.65 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 82.67 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.38 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.40 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.62 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.70 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.71 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.73 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.82 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 83.86 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.44 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.46 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.47 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.49 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.50 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 84.54 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 85.18 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 85.35 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 86.05 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 95.47 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 96.46 [resolver:install] Using default POM (ome:bioformats_package:8.3.0-SNAPSHOT)
#16 96.47 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/bioformats_package-8.3.0-SNAPSHOT.pom
#16 96.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/bioformats_package-8.3.0-SNAPSHOT.jar
#16 96.59 [resolver:install] Installing ome:bioformats_package:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 96.59 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 96.60
#16 96.60 BUILD SUCCESSFUL
#16 96.60 Total time: 1 minute 34 seconds
#16 DONE 97.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 7.1s done
#18 writing image sha256:747ed7389d7bad76df85d89cee40c7c9ce7cee166d70ca58e71ad58d818b1c17 0.1s done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 7.2s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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