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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.3.9/maven-artifact-3.3.9.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.3.9/maven-core-3.3.9.jar (638 kB at 3.0 MB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.3.9/maven-settings-builder-3.3.9.jar (43 kB at 204 kB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.3.9/maven-model-builder-3.3.9.jar
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.jar (27 kB at 123 kB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.3.9/maven-aether-provider-3.3.9.jar
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/1.0.2.v20150114/aether-spi-1.0.2.v20150114.jar
#14 387.7 Progress (3): 47 kB | 177 kB | 0.2/2.3 MB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/1.0.2.v20150114/aether-impl-1.0.2.v20150114.jar
#14 387.7 Progress (3): 177 kB | 0.3/2.3 MB | 67 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.jar
#14 387.7 Progress (2): 0.3/2.3 MB | 67 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-util/1.0.2.v20150114/aether-util-1.0.2.v20150114.jar
#14 387.7 Progress (2): 0.5/2.3 MB | 31 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.jar
#14 387.7 Progress (3): 0.6/2.3 MB | 127/173 kB | 37/136 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar
#14 387.7 Progress (4): 1.0/2.3 MB | 173 kB | 147 kB | 110/205 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar
#14 387.7 Progress (3): 1.0/2.3 MB | 147 kB | 134/205 kB
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar
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#14 387.7 Progress (3): 1.4/2.3 MB | 45 kB | 5.8 kB
Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar
#14 387.7 Progress (4): 1.4/2.3 MB | 45 kB | 5.8 kB | 4.1/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar (5.8 kB at 19 kB/s)
#14 387.7 Progress (3): 1.5/2.3 MB | 45 kB | 172/378 kB
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Downloading from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar
#14 387.7 Progress (3): 1.5/2.3 MB | 45 kB | 180/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar (45 kB at 148 kB/s)
#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
#14 387.7 Progress (2): 1.5/2.3 MB | 180/378 kB
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
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#14 387.8 Progress (4): 2.3 MB | 62 kB | 53 kB | 49/435 kB
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#14 387.8 Progress (4): 2.3 MB | 62 kB | 53 kB | 53/435 kB
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/3.5.2/maven-archiver-3.5.2.jar
#14 387.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar (62 kB at 177 kB/s)
#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.3.3/maven-shared-utils-3.3.3.jar
#14 387.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar (53 kB at 149 kB/s)
#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/tukaani/xz/1.9/xz-1.9.jar
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.0/plexus-utils-3.3.0.jar
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#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0/doxia-sink-api-1.0.jar
#14 387.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar (632 kB at 1.5 MB/s)
#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/1.0/doxia-site-renderer-1.0.jar
#14 387.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/tukaani/xz/1.9/xz-1.9.jar (116 kB at 280 kB/s)
#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar
#14 387.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar (37 kB at 88 kB/s)
#14 387.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
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#14 387.9 [output clipped, log limit 2MiB reached]
#14 489.9 SLF4J: No SLF4J providers were found.
#14 489.9 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 489.9 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 502.6s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.484 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.851 [echo] isSnapshot = true
#16 1.953
#16 1.953 copy-jars:
#16 1.953
#16 1.953 deps-formats-api:
#16 2.035 [echo] isSnapshot = true
#16 2.094
#16 2.094 install-pom:
#16 2.278 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.380 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.384 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.386
#16 2.386 jar-formats-api:
#16 2.508 [echo] isSnapshot = true
#16 2.668
#16 2.668 init-title:
#16 2.668 [echo] ----------=========== formats-api ===========----------
#16 2.668
#16 2.668 init-timestamp:
#16 2.675
#16 2.675 init:
#16 2.675
#16 2.675 copy-resources:
#16 2.676 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.689 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.693
#16 2.693 compile:
#16 2.887 [resolver:resolve] Resolving artifacts
#16 2.915 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.183 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.783 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.784 [javac] import loci.common.ReflectedUniverse;
#16 3.784 [javac] ^
#16 4.084 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.084 [javac] int currentIndex = r.getCoreIndex();
#16 4.084 [javac] ^
#16 4.084 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.084 [javac] r.setCoreIndex(coreIndex);
#16 4.084 [javac] ^
#16 4.084 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.084 [javac] r.setCoreIndex(currentIndex);
#16 4.084 [javac] ^
#16 4.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.185 [javac] public void setCoreIndex(int no) {
#16 4.185 [javac] ^
#16 4.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.185 [javac] public int getCoreIndex() {
#16 4.185 [javac] ^
#16 4.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.185 [javac] public int coreIndexToSeries(int index)
#16 4.185 [javac] ^
#16 4.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.185 [javac] public int seriesToCoreIndex(int series)
#16 4.185 [javac] ^
#16 4.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.185 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.185 [javac] ^
#16 4.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.286 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.286 [javac] ^
#16 4.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.286 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.286 [javac] ^
#16 4.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.287 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.287 [javac] ^
#16 4.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.287 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.287 [javac] ^
#16 4.387 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.387 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.387 [javac] ^
#16 4.387 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.387 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.387 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.488 [javac] public void setCoreIndex(int no) {
#16 4.488 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.488 [javac] public int getCoreIndex() {
#16 4.488 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.488 [javac] public int coreIndexToSeries(int index) {
#16 4.488 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.488 [javac] public int seriesToCoreIndex(int series) {
#16 4.488 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.488 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.488 [javac] ^
#16 4.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.488 [javac] return getReader().getCoreMetadataList();
#16 4.488 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.589 [javac] return getReader().getCoreIndex();
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.589 [javac] getReader().setCoreIndex(no);
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.589 [javac] return getReader().seriesToCoreIndex(series);
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.589 [javac] return getReader().coreIndexToSeries(index);
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.589 [javac] public void setCoreIndex(int no) {
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.589 [javac] public int getCoreIndex() {
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.589 [javac] public int coreIndexToSeries(int index) {
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.589 [javac] public int seriesToCoreIndex(int series) {
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.589 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.589 [javac] ^
#16 4.589 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.589 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.589 [javac] ^
#16 4.590 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.590 [javac] return reader.getCoreIndex();
#16 4.590 [javac] ^
#16 4.590 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.590 [javac] reader.setCoreIndex(no);
#16 4.590 [javac] ^
#16 4.590 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.590 [javac] return reader.seriesToCoreIndex(series);
#16 4.590 [javac] ^
#16 4.590 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.590 [javac] return reader.coreIndexToSeries(index);
#16 4.590 [javac] ^
#16 4.790 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.790 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.790 [javac] 36 warnings
#16 4.798
#16 4.798 formats-api.jar:
#16 4.798 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.823 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.856 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.860 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.867 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.869 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.871 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.872
#16 4.872 deps-turbojpeg:
#16 4.872
#16 4.872 jar-turbojpeg:
#16 4.968 [echo] isSnapshot = true
#16 5.116
#16 5.116 init-title:
#16 5.116 [echo] ----------=========== turbojpeg ===========----------
#16 5.116
#16 5.116 init-timestamp:
#16 5.116
#16 5.116 init:
#16 5.116
#16 5.116 copy-resources:
#16 5.117 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.118
#16 5.118 compile:
#16 5.127 [resolver:resolve] Resolving artifacts
#16 5.131 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.333 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.934 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.934 [javac] protected void finalize() throws Throwable {
#16 5.934 [javac] ^
#16 5.934 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.934 [javac] super.finalize();
#16 5.934 [javac] ^
#16 5.998 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.998 [javac] protected void finalize() throws Throwable {
#16 5.998 [javac] ^
#16 5.998 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.998 [javac] super.finalize();
#16 5.998 [javac] ^
#16 5.998 [javac] 5 warnings
#16 5.999
#16 5.999 jar:
#16 6.003 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.187 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.200 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.477 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.480 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.484 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.486
#16 6.486 deps-formats-bsd:
#16 6.486
#16 6.486 jar-formats-bsd:
#16 6.608 [echo] isSnapshot = true
#16 6.756
#16 6.756 init-title:
#16 6.756 [echo] ----------=========== formats-bsd ===========----------
#16 6.756
#16 6.756 init-timestamp:
#16 6.756
#16 6.756 init:
#16 6.756
#16 6.756 copy-resources:
#16 6.757 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.760 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.761
#16 6.761 compile:
#16 6.978 [resolver:resolve] Resolving artifacts
#16 7.008 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.217 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.318 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.318 [javac] import loci.common.ReflectedUniverse;
#16 8.318 [javac] ^
#16 8.619 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.619 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.619 [javac] ^
#16 8.619 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.619 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.619 [javac] ^
#16 8.719 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.719 [javac] int n = reader.getCoreMetadataList().size();
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.720 [javac] reader.setCoreIndex(coreIndex);
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.720 [javac] int n = reader.getCoreMetadataList().size();
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.720 [javac] int n = reader.getCoreMetadataList().size();
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.720 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.720 [javac] int n = reader.getCoreMetadataList().size();
#16 8.720 [javac] ^
#16 8.720 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.721 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] int n = reader.getCoreMetadataList().size();
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.721 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.721 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.721 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.721 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.721 [javac] ^
#16 8.721 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.722 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.722 [javac] ^
#16 8.822 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.822 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.822 [javac] ^
#16 9.022 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.022 [javac] BitWriter out = new BitWriter();
#16 9.022 [javac] ^
#16 9.022 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.022 [javac] BitWriter out = new BitWriter();
#16 9.022 [javac] ^
#16 9.122 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.122 [javac] return new Double(v);
#16 9.123 [javac] ^
#16 9.723 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.723 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.723 [javac] ^
#16 9.724 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.724 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.724 [javac] ^
#16 9.724 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.724 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.724 [javac] ^
#16 9.824 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.824 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.824 [javac] ^
#16 10.02 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.02 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.02 [javac] ^
#16 10.12 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.12 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.12 [javac] ^
#16 10.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.22 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.22 [javac] ^
#16 10.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.22 [javac] protected ReflectedUniverse r;
#16 10.22 [javac] ^
#16 10.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.22 [javac] r = new ReflectedUniverse();
#16 10.22 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.33 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.33 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.33 [javac] ^
#16 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.43 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.43 [javac] ^
#16 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.43 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.43 [javac] ^
#16 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.43 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.43 [javac] ^
#16 10.50 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.50 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.50 [javac] 46 warnings
#16 10.50
#16 10.50 formats-bsd.jar:
#16 10.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.62 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.62 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.68 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.68 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.68
#16 10.68 deps-formats-gpl:
#16 10.68
#16 10.68 jar-formats-gpl:
#16 10.77 [echo] isSnapshot = true
#16 10.91
#16 10.91 init-title:
#16 10.91 [echo] ----------=========== formats-gpl ===========----------
#16 10.91
#16 10.91 init-timestamp:
#16 10.91
#16 10.91 init:
#16 10.91
#16 10.91 copy-resources:
#16 10.91 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.91 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.91
#16 10.91 compile:
#16 11.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.50 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.53 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.97 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.06 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.20 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.29 [resolver:resolve] Resolving artifacts
#16 12.30 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.30 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.80 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.81 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.83 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.03 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.34 [javac] import loci.formats.codec.BitWriter;
#16 14.34 [javac] ^
#16 14.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.34 [javac] import loci.formats.codec.BitWriter;
#16 14.34 [javac] ^
#16 16.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.34 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.34 [javac] ^
#16 16.34 [javac] cast to Object for a varargs call
#16 16.34 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.44 [javac] BitWriter bits = null;
#16 16.44 [javac] ^
#16 16.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.44 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.44 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.74 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.74 [javac] ^
#16 17.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.14 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.14 [javac] ^
#16 17.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.14 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.14 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.41 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.41 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.41 [javac] String groupName = group.getName();
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.41 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.41 [javac] String attributeName = attribute.getName();
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.41 [javac] String variableName = variable.getName();
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.41 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.41 [javac] ^
#16 17.41 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.41 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.41 [javac] 16 warnings
#16 17.41
#16 17.41 formats-gpl.jar:
#16 17.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.55 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.56 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.56 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.57 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.57
#16 17.57 deps-bio-formats-plugins:
#16 17.57
#16 17.57 jar-bio-formats-plugins:
#16 17.66 [echo] isSnapshot = true
#16 17.80
#16 17.80 init-title:
#16 17.80 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.80
#16 17.80 init-timestamp:
#16 17.80
#16 17.80 init:
#16 17.80
#16 17.80 copy-resources:
#16 17.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.80 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.80
#16 17.80 compile:
#16 18.05 [resolver:resolve] Resolving artifacts
#16 18.07 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.08 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.08 [javac] import loci.common.ReflectedUniverse;
#16 19.08 [javac] ^
#16 19.08 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.08 [javac] import loci.common.ReflectedUniverse;
#16 19.08 [javac] ^
#16 19.58 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.58 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.58 [javac] ^
#16 19.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.68 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.68 [javac] ^
#16 19.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.68 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.68 [javac] ^
#16 19.78 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.78 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.78 [javac] ^
#16 19.78 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.78 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.78 [javac] ^
#16 20.18 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.18 [javac] 8 warnings
#16 20.21
#16 20.21 bio-formats-plugins.jar:
#16 20.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.24 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.25 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.25 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.26 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.26
#16 20.26 deps-bio-formats-tools:
#16 20.26
#16 20.26 jar-bio-formats-tools:
#16 20.35 [echo] isSnapshot = true
#16 20.48
#16 20.48 init-title:
#16 20.48 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.48
#16 20.48 init-timestamp:
#16 20.48
#16 20.48 init:
#16 20.48
#16 20.48 copy-resources:
#16 20.48 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.48
#16 20.48 compile:
#16 20.71 [resolver:resolve] Resolving artifacts
#16 20.72 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.93 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.99 [javac] 1 warning
#16 21.99
#16 21.99 bio-formats-tools.jar:
#16 22.00 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.00 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.01 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.01 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.01 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.01 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.01
#16 22.01 deps-tests:
#16 22.01
#16 22.01 jar-tests:
#16 22.09 [echo] isSnapshot = true
#16 22.22
#16 22.22 init-title:
#16 22.22 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.22
#16 22.22 init-timestamp:
#16 22.22
#16 22.22 init:
#16 22.22
#16 22.22 copy-resources:
#16 22.22 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.22
#16 22.22 compile:
#16 22.53 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.61 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.63 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.04 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.47 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.55 [resolver:resolve] Resolving artifacts
#16 23.56 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.60 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.04 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.41 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.42 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.62 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.62 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.62 [javac] ^
#16 25.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.62 [javac] reader.setCoreIndex(index);
#16 25.62 [javac] ^
#16 25.82 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.82 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.82 [javac] ^
#16 25.82 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.82 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.82 [javac] ^
#16 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.13 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.13 [javac] ^
#16 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.13 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.13 [javac] ^
#16 26.13 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.13 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.13 [javac] 7 warnings
#16 26.16
#16 26.16 tests.jar:
#16 26.17 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.18 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.19 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.19 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.19 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.20 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.20
#16 26.20 jars:
#16 26.20
#16 26.20 copy-jars:
#16 26.20
#16 26.20 deps-formats-api:
#16 26.24 [echo] isSnapshot = true
#16 26.28
#16 26.28 install-pom:
#16 26.40 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.40 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.41 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.41
#16 26.41 jar-formats-api:
#16 26.49 [echo] isSnapshot = true
#16 26.62
#16 26.62 init-title:
#16 26.62 [echo] ----------=========== formats-api ===========----------
#16 26.62
#16 26.62 init-timestamp:
#16 26.62
#16 26.62 init:
#16 26.62
#16 26.62 copy-resources:
#16 26.62
#16 26.62 compile:
#16 26.76 [resolver:resolve] Resolving artifacts
#16 26.77
#16 26.77 formats-api.jar:
#16 26.79 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 26.79 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 26.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 26.79 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.80 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.80
#16 26.80 deps-turbojpeg:
#16 26.80
#16 26.80 jar-turbojpeg:
#16 26.87 [echo] isSnapshot = true
#16 27.00
#16 27.00 init-title:
#16 27.00 [echo] ----------=========== turbojpeg ===========----------
#16 27.00
#16 27.00 init-timestamp:
#16 27.00
#16 27.00 init:
#16 27.00
#16 27.00 copy-resources:
#16 27.00
#16 27.00 compile:
#16 27.00 [resolver:resolve] Resolving artifacts
#16 27.01
#16 27.01 jar:
#16 27.01 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.02 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.02 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.03 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.03
#16 27.03 deps-formats-bsd:
#16 27.03
#16 27.03 jar-formats-bsd:
#16 27.10 [echo] isSnapshot = true
#16 27.23
#16 27.23 init-title:
#16 27.23 [echo] ----------=========== formats-bsd ===========----------
#16 27.23
#16 27.23 init-timestamp:
#16 27.23
#16 27.23 init:
#16 27.23
#16 27.23 copy-resources:
#16 27.23
#16 27.23 compile:
#16 27.41 [resolver:resolve] Resolving artifacts
#16 27.43
#16 27.43 formats-bsd.jar:
#16 27.46 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.46 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.46 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.47 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.47
#16 27.47 deps-formats-gpl:
#16 27.47
#16 27.47 jar-formats-gpl:
#16 27.55 [echo] isSnapshot = true
#16 27.68
#16 27.68 init-title:
#16 27.68 [echo] ----------=========== formats-gpl ===========----------
#16 27.68
#16 27.68 init-timestamp:
#16 27.68
#16 27.68 init:
#16 27.68
#16 27.68 copy-resources:
#16 27.68
#16 27.68 compile:
#16 27.90 [resolver:resolve] Resolving artifacts
#16 27.92
#16 27.92 formats-gpl.jar:
#16 27.95 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.95 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.96 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.96 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.96
#16 27.96 deps-bio-formats-plugins:
#16 27.96
#16 27.96 jar-bio-formats-plugins:
#16 28.04 [echo] isSnapshot = true
#16 28.16
#16 28.16 init-title:
#16 28.17 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.17
#16 28.17 init-timestamp:
#16 28.17
#16 28.17 init:
#16 28.17
#16 28.17 copy-resources:
#16 28.17
#16 28.17 compile:
#16 28.40 [resolver:resolve] Resolving artifacts
#16 28.41
#16 28.41 bio-formats-plugins.jar:
#16 28.42 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.43 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.43 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.43 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.43
#16 28.43 deps-bio-formats-tools:
#16 28.43
#16 28.43 jar-bio-formats-tools:
#16 28.52 [echo] isSnapshot = true
#16 28.71
#16 28.71 init-title:
#16 28.71 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.71
#16 28.71 init-timestamp:
#16 28.71
#16 28.71 init:
#16 28.71
#16 28.71 copy-resources:
#16 28.71
#16 28.71 compile:
#16 28.93 [resolver:resolve] Resolving artifacts
#16 28.94
#16 28.94 bio-formats-tools.jar:
#16 28.94 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.95 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.95 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.95 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.96
#16 28.96 deps-tests:
#16 28.96
#16 28.96 jar-tests:
#16 29.03 [echo] isSnapshot = true
#16 29.16
#16 29.16 init-title:
#16 29.16 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.16
#16 29.16 init-timestamp:
#16 29.16
#16 29.16 init:
#16 29.16
#16 29.16 copy-resources:
#16 29.16
#16 29.16 compile:
#16 29.38 [resolver:resolve] Resolving artifacts
#16 29.39
#16 29.39 tests.jar:
#16 29.40 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.40 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.40 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.41 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.41 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.41
#16 29.41 jars:
#16 29.41
#16 29.41 tools:
#16 29.41 [echo] ----------=========== bioformats_package ===========----------
#16 29.49 [echo] isSnapshot = true
#16 29.62
#16 29.62 init-timestamp:
#16 29.62
#16 29.62 bundle:
#16 29.86 [resolver:resolve] Resolving artifacts
#16 29.87 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.92 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.10 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.39 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.65 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.16 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.32 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.37 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.40 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.64 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.20 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.23 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.41 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.69 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.76 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.82 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.58 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.77 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.77 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.79 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.94 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.96 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.98 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.98 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.43 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.54 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.29 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.82 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 40.82 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 40.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 40.90 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.90 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.91
#16 40.91 BUILD SUCCESSFUL
#16 40.91 Total time: 40 seconds
#16 DONE 41.9s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:d890546e067039deaa09dd92b41c711f830395099beb9181584a01916a9c632f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
Finished: SUCCESS
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