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#14 457.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 93 kB/s)
#14 457.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
#14 457.0 Progress (4): 145 kB | 134 kB | 176/197 kB | 0/1.5 MB
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#14 457.1 Progress (3): 134 kB | 197 kB | 0.7/1.5 MB
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#14 457.1 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#14 457.1 Progress (2): 197 kB | 0.8/1.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar (197 kB at 877 kB/s)
#14 457.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#14 457.1 Progress (2): 1.0/1.5 MB | 33 kB
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#14 457.1 Progress (3): 1.5 MB | 192/291 kB | 98/357 kB
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#14 457.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar (50 kB at 172 kB/s)
#14 457.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar (357 kB at 1.2 MB/s)
#14 457.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar (85 kB at 272 kB/s)
#14 457.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/central/central-publishing-maven-plugin/0.8.0/central-publishing-maven-plugin-0.8.0.pom
#14 457.3 Progress (1): 4.1 kB
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#14 457.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/32/buildsupport-32.pom
#14 457.4 Progress (1): 4.1 kB
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#14 457.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.5.1/plexus-utils-3.5.1.pom
#14 457.5 Progress (1): 4.1 kB
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#14 457.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/10/plexus-10.pom
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#14 457.6 Downloading from central: https://repo.maven.apache.org/maven2/com/github/package-url/packageurl-java/1.4.1/packageurl-java-1.4.1.pom
#14 457.6 Progress (1): 4.1 kB
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#14 457.6 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/32.1.0-jre/guava-32.1.0-jre.pom
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#14 457.7 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/32.1.0-jre/guava-parent-32.1.0-jre.pom
#14 457.7 Progress (1): 4.1 kB
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#14 457.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.12.0/commons-lang3-3.12.0.pom
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/org/junit/junit-bom/5.7.1/junit-bom-5.7.1.pom
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.pom
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#14 458.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-base/2.16.1/jackson-base-2.16.1.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/central/central-publishing-maven-plugin/0.8.0/central-publishing-maven-plugin-0.8.0.jar (111 kB at 1.7 MB/s)
#14 458.8 Progress (4): 269 kB | 16 kB | 501 kB | 0.7/3.0 MB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.12.0/commons-lang3-3.12.0.jar
#14 458.8 Progress (4): 269 kB | 16 kB | 501 kB | 0.7/3.0 MB
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#14 458.8 Progress (3): 16 kB | 501 kB | 0.8/3.0 MB
Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.jar
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#14 458.8 Progress (2): 501 kB | 1.0/3.0 MB
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#14 458.8 Progress (2): 501 kB | 1.0/3.0 MB
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#14 458.8 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.16.1/jackson-core-2.16.1.jar
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#14 458.8 [output clipped, log limit 2MiB reached]
#14 592.6 SLF4J: No SLF4J providers were found.
#14 592.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 592.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 600.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.331 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.658 [echo] isSnapshot = true
#16 0.767
#16 0.767 copy-jars:
#16 0.767
#16 0.767 deps-formats-api:
#16 0.851 [echo] isSnapshot = true
#16 0.911
#16 0.911 install-pom:
#16 1.116 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 1.122 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 1.127 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.128
#16 1.128 jar-formats-api:
#16 1.244 [echo] isSnapshot = true
#16 1.429
#16 1.429 init-title:
#16 1.430 [echo] ----------=========== formats-api ===========----------
#16 1.430
#16 1.430 init-timestamp:
#16 1.434
#16 1.434 init:
#16 1.434
#16 1.434 copy-resources:
#16 1.435 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.450 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.453
#16 1.453 compile:
#16 1.641 [resolver:resolve] Resolving artifacts
#16 1.726 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.339 [javac] import loci.common.ReflectedUniverse;
#16 2.339 [javac] ^
#16 2.439 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.440 [javac] int currentIndex = r.getCoreIndex();
#16 2.440 [javac] ^
#16 2.440 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.440 [javac] r.setCoreIndex(coreIndex);
#16 2.440 [javac] ^
#16 2.440 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.440 [javac] r.setCoreIndex(currentIndex);
#16 2.440 [javac] ^
#16 2.640 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.640 [javac] public void setCoreIndex(int no) {
#16 2.640 [javac] ^
#16 2.640 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.640 [javac] public int getCoreIndex() {
#16 2.641 [javac] ^
#16 2.641 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.641 [javac] public int coreIndexToSeries(int index)
#16 2.641 [javac] ^
#16 2.641 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.641 [javac] public int seriesToCoreIndex(int series)
#16 2.641 [javac] ^
#16 2.641 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.641 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 2.641 [javac] ^
#16 2.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.742 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 2.742 [javac] ^
#16 2.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.742 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 2.742 [javac] ^
#16 2.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.742 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 2.742 [javac] ^
#16 2.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.742 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 2.742 [javac] ^
#16 2.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.743 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 2.743 [javac] ^
#16 2.743 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.743 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 2.743 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.844 [javac] public void setCoreIndex(int no) {
#16 2.844 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.844 [javac] public int getCoreIndex() {
#16 2.844 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.844 [javac] public int coreIndexToSeries(int index) {
#16 2.844 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.844 [javac] public int seriesToCoreIndex(int series) {
#16 2.844 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.844 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 2.844 [javac] ^
#16 2.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.845 [javac] return getReader().getCoreMetadataList();
#16 2.845 [javac] ^
#16 2.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.845 [javac] return getReader().getCoreIndex();
#16 2.845 [javac] ^
#16 2.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.845 [javac] getReader().setCoreIndex(no);
#16 2.845 [javac] ^
#16 2.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.846 [javac] return getReader().seriesToCoreIndex(series);
#16 2.846 [javac] ^
#16 2.846 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.846 [javac] return getReader().coreIndexToSeries(index);
#16 2.846 [javac] ^
#16 2.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.946 [javac] public void setCoreIndex(int no) {
#16 2.946 [javac] ^
#16 2.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.946 [javac] public int getCoreIndex() {
#16 2.946 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.947 [javac] public int coreIndexToSeries(int index) {
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.947 [javac] public int seriesToCoreIndex(int series) {
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.947 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.947 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.947 [javac] return reader.getCoreIndex();
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.947 [javac] reader.setCoreIndex(no);
#16 2.947 [javac] ^
#16 2.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.947 [javac] return reader.seriesToCoreIndex(series);
#16 2.947 [javac] ^
#16 2.948 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.948 [javac] return reader.coreIndexToSeries(index);
#16 2.948 [javac] ^
#16 3.048 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.048 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.048 [javac] 35 warnings
#16 3.116
#16 3.116 formats-api.jar:
#16 3.116 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.141 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.174 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 3.178 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 3.181 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 3.182 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.185 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.186
#16 3.186 deps-turbojpeg:
#16 3.186
#16 3.186 jar-turbojpeg:
#16 3.292 [echo] isSnapshot = true
#16 3.470
#16 3.470 init-title:
#16 3.471 [echo] ----------=========== turbojpeg ===========----------
#16 3.471
#16 3.471 init-timestamp:
#16 3.471
#16 3.471 init:
#16 3.471
#16 3.471 copy-resources:
#16 3.471 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.472
#16 3.472 compile:
#16 3.484 [resolver:resolve] Resolving artifacts
#16 3.487 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.214
#16 4.214 jar:
#16 4.219 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.405 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 4.414 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 4.418 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 4.420 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 4.425 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.425
#16 4.425 deps-formats-bsd:
#16 4.426
#16 4.426 jar-formats-bsd:
#16 4.526 [echo] isSnapshot = true
#16 4.699
#16 4.699 init-title:
#16 4.699 [echo] ----------=========== formats-bsd ===========----------
#16 4.699
#16 4.699 init-timestamp:
#16 4.700
#16 4.700 init:
#16 4.700
#16 4.700 copy-resources:
#16 4.700 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.703 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.704
#16 4.704 compile:
#16 4.924 [resolver:resolve] Resolving artifacts
#16 4.955 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.064 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.064 [javac] import loci.common.ReflectedUniverse;
#16 6.064 [javac] ^
#16 6.364 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.364 [javac] core.size() != reader.getCoreMetadataList().size())
#16 6.364 [javac] ^
#16 6.364 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.364 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.364 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.465 [javac] int n = reader.getCoreMetadataList().size();
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.465 [javac] reader.setCoreIndex(coreIndex);
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.465 [javac] int n = reader.getCoreMetadataList().size();
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.465 [javac] int n = reader.getCoreMetadataList().size();
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.465 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.465 [javac] int n = reader.getCoreMetadataList().size();
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.465 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.465 [javac] ^
#16 6.465 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.465 [javac] int n = reader.getCoreMetadataList().size();
#16 6.465 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.466 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.466 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.466 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.466 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.466 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.466 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 6.466 [javac] ^
#16 6.466 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.466 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.467 [javac] ^
#16 6.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.467 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.467 [javac] ^
#16 6.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.467 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.467 [javac] ^
#16 6.567 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.567 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 6.567 [javac] ^
#16 6.667 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.667 [javac] BitWriter out = new BitWriter();
#16 6.667 [javac] ^
#16 6.667 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.668 [javac] BitWriter out = new BitWriter();
#16 6.668 [javac] ^
#16 7.668 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.668 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 7.668 [javac] ^
#16 7.668 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 7.669 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 7.669 [javac] ^
#16 7.869 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.869 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 7.869 [javac] ^
#16 7.869 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.869 [javac] protected ReflectedUniverse r;
#16 7.869 [javac] ^
#16 7.869 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.869 [javac] r = new ReflectedUniverse();
#16 7.869 [javac] ^
#16 7.969 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 7.969 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 7.969 [javac] ^
#16 7.969 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 7.969 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 7.970 [javac] ^
#16 7.970 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 7.970 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 7.970 [javac] ^
#16 7.970 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 7.970 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 7.970 [javac] ^
#16 7.970 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 7.970 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 7.970 [javac] ^
#16 7.970 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 7.970 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 7.970 [javac] ^
#16 7.970 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 7.970 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 7.971 [javac] ^
#16 7.971 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 7.971 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 7.971 [javac] ^
#16 7.971 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 7.971 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 7.971 [javac] ^
#16 8.071 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.071 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.071 [javac] ^
#16 8.071 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.071 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.071 [javac] 38 warnings
#16 8.183
#16 8.183 formats-bsd.jar:
#16 8.196 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.309 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 8.313 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 8.316 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 8.318 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 8.321 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.322
#16 8.322 deps-formats-gpl:
#16 8.322
#16 8.322 jar-formats-gpl:
#16 8.421 [echo] isSnapshot = true
#16 8.600
#16 8.600 init-title:
#16 8.600 [echo] ----------=========== formats-gpl ===========----------
#16 8.600
#16 8.600 init-timestamp:
#16 8.601
#16 8.601 init:
#16 8.601
#16 8.601 copy-resources:
#16 8.601 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.602 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.603
#16 8.603 compile:
#16 9.059 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.434 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.940 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.945 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.11 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.23 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.39 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.51 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.57 [resolver:resolve] Resolving artifacts
#16 10.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.92 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.92 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.27 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.27 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.29 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.50 [javac] import loci.formats.codec.BitWriter;
#16 12.50 [javac] ^
#16 12.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.60 [javac] import loci.formats.codec.BitWriter;
#16 12.60 [javac] ^
#16 14.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.40 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.40 [javac] ^
#16 14.40 [javac] cast to Object for a varargs call
#16 14.40 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.50 [javac] BitWriter bits = null;
#16 14.50 [javac] ^
#16 14.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.50 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.50 [javac] ^
#16 14.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.70 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.70 [javac] ^
#16 15.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 15.00 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 15.00 [javac] ^
#16 15.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 15.00 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 15.00 [javac] ^
#16 15.10 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.10 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.10 [javac] ^
#16 15.10 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.10 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.10 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.30 [javac] Variable variable = group.findVariable(variableName);
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.30 [javac] Variable variable = group.findVariable(variableName);
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.30 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.30 [javac] String groupName = group.getName();
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.30 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.30 [javac] String variableName = variable.getName();
#16 15.30 [javac] ^
#16 15.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.30 [javac] Group nextParent = parent.findGroup(token);
#16 15.30 [javac] ^
#16 15.30 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.30 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.30 [javac] 17 warnings
#16 15.34
#16 15.34 formats-gpl.jar:
#16 15.34 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.49 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 15.49 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 15.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 15.54 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 15.55 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.55
#16 15.55 deps-bio-formats-plugins:
#16 15.55
#16 15.55 jar-bio-formats-plugins:
#16 15.64 [echo] isSnapshot = true
#16 15.82
#16 15.82 init-title:
#16 15.82 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.82
#16 15.82 init-timestamp:
#16 15.82
#16 15.82 init:
#16 15.82
#16 15.82 copy-resources:
#16 15.83 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.83 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.83
#16 15.83 compile:
#16 16.08 [resolver:resolve] Resolving artifacts
#16 16.10 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.90 [javac] import loci.common.ReflectedUniverse;
#16 16.90 [javac] ^
#16 16.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.90 [javac] import loci.common.ReflectedUniverse;
#16 16.90 [javac] ^
#16 17.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.40 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.40 [javac] ^
#16 17.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.50 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.50 [javac] ^
#16 17.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.50 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.50 [javac] ^
#16 17.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.60 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.60 [javac] ^
#16 17.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.60 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.60 [javac] ^
#16 17.90 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 17.90 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.90 [javac] 7 warnings
#16 17.93
#16 17.93 bio-formats-plugins.jar:
#16 17.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 17.96 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 17.97 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 17.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 17.97 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 17.97 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 17.98
#16 17.98 deps-bio-formats-tools:
#16 17.98
#16 17.98 jar-bio-formats-tools:
#16 18.07 [echo] isSnapshot = true
#16 18.25
#16 18.25 init-title:
#16 18.25 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.25
#16 18.25 init-timestamp:
#16 18.25
#16 18.25 init:
#16 18.25
#16 18.25 copy-resources:
#16 18.25 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.26
#16 18.26 compile:
#16 18.50 [resolver:resolve] Resolving artifacts
#16 18.51 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.52
#16 19.52 bio-formats-tools.jar:
#16 19.53 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.54 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 19.54 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 19.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 19.54 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 19.55 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.55
#16 19.55 deps-tests:
#16 19.55
#16 19.55 jar-tests:
#16 19.64 [echo] isSnapshot = true
#16 19.81
#16 19.81 init-title:
#16 19.81 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 19.81
#16 19.81 init-timestamp:
#16 19.81
#16 19.81 init:
#16 19.81
#16 19.81 copy-resources:
#16 19.81 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 19.81
#16 19.81 compile:
#16 20.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.24 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.59 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.61 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.25 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.67 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 21.69 [resolver:resolve] Resolving artifacts
#16 21.70 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.77 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.12 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.13 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.54 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.91 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.91 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.94 [javac] int index = unflattenedReader.getCoreIndex();
#16 23.94 [javac] ^
#16 23.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.94 [javac] reader.setCoreIndex(index);
#16 23.94 [javac] ^
#16 24.14 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.14 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.14 [javac] ^
#16 24.14 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.14 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.14 [javac] ^
#16 24.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.33 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.33 [javac] ^
#16 24.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.33 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.33 [javac] ^
#16 24.33 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.33 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.33 [javac] 6 warnings
#16 24.33
#16 24.33 tests.jar:
#16 24.34 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.35 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 24.35 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 24.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 24.36 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 24.36 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.36
#16 24.36 jars:
#16 24.36
#16 24.36 copy-jars:
#16 24.36
#16 24.36 deps-formats-api:
#16 24.42 [echo] isSnapshot = true
#16 24.47
#16 24.47 install-pom:
#16 24.64 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 24.64 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 24.65 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.65
#16 24.65 jar-formats-api:
#16 24.74 [echo] isSnapshot = true
#16 24.90
#16 24.90 init-title:
#16 24.90 [echo] ----------=========== formats-api ===========----------
#16 24.90
#16 24.90 init-timestamp:
#16 24.90
#16 24.90 init:
#16 24.90
#16 24.90 copy-resources:
#16 24.91
#16 24.91 compile:
#16 25.06 [resolver:resolve] Resolving artifacts
#16 25.07
#16 25.07 formats-api.jar:
#16 25.09 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 25.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 25.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 25.10 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 25.10 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.10
#16 25.10 deps-turbojpeg:
#16 25.10
#16 25.10 jar-turbojpeg:
#16 25.36 [echo] isSnapshot = true
#16 25.52
#16 25.52 init-title:
#16 25.52 [echo] ----------=========== turbojpeg ===========----------
#16 25.52
#16 25.52 init-timestamp:
#16 25.52
#16 25.52 init:
#16 25.52
#16 25.52 copy-resources:
#16 25.52
#16 25.52 compile:
#16 25.53 [resolver:resolve] Resolving artifacts
#16 25.54
#16 25.54 jar:
#16 25.54 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 25.55 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 25.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 25.55 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 25.56 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.56
#16 25.56 deps-formats-bsd:
#16 25.56
#16 25.56 jar-formats-bsd:
#16 25.65 [echo] isSnapshot = true
#16 25.82
#16 25.82 init-title:
#16 25.82 [echo] ----------=========== formats-bsd ===========----------
#16 25.82
#16 25.82 init-timestamp:
#16 25.82
#16 25.82 init:
#16 25.82
#16 25.82 copy-resources:
#16 25.82
#16 25.82 compile:
#16 26.01 [resolver:resolve] Resolving artifacts
#16 26.03
#16 26.03 formats-bsd.jar:
#16 26.06 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 26.07 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 26.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 26.07 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.07 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.07
#16 26.07 deps-formats-gpl:
#16 26.07
#16 26.07 jar-formats-gpl:
#16 26.16 [echo] isSnapshot = true
#16 26.32
#16 26.32 init-title:
#16 26.32 [echo] ----------=========== formats-gpl ===========----------
#16 26.32
#16 26.32 init-timestamp:
#16 26.32
#16 26.32 init:
#16 26.32
#16 26.32 copy-resources:
#16 26.32
#16 26.32 compile:
#16 26.55 [resolver:resolve] Resolving artifacts
#16 26.56
#16 26.56 formats-gpl.jar:
#16 26.60 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 26.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 26.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 26.60 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.61
#16 26.61 deps-bio-formats-plugins:
#16 26.61
#16 26.61 jar-bio-formats-plugins:
#16 26.70 [echo] isSnapshot = true
#16 26.87
#16 26.87 init-title:
#16 26.87 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.87
#16 26.87 init-timestamp:
#16 26.87
#16 26.87 init:
#16 26.87
#16 26.87 copy-resources:
#16 26.87
#16 26.87 compile:
#16 27.11 [resolver:resolve] Resolving artifacts
#16 27.13
#16 27.13 bio-formats-plugins.jar:
#16 27.14 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 27.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 27.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 27.15 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.15 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.15
#16 27.15 deps-bio-formats-tools:
#16 27.15
#16 27.15 jar-bio-formats-tools:
#16 27.24 [echo] isSnapshot = true
#16 27.41
#16 27.41 init-title:
#16 27.41 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.41
#16 27.41 init-timestamp:
#16 27.41
#16 27.41 init:
#16 27.41
#16 27.41 copy-resources:
#16 27.41
#16 27.41 compile:
#16 27.65 [resolver:resolve] Resolving artifacts
#16 27.66
#16 27.66 bio-formats-tools.jar:
#16 27.66 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 27.67 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 27.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 27.67 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.67 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.68
#16 27.68 deps-tests:
#16 27.68
#16 27.68 jar-tests:
#16 27.77 [echo] isSnapshot = true
#16 27.94
#16 27.94 init-title:
#16 27.94 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.94
#16 27.94 init-timestamp:
#16 27.94
#16 27.94 init:
#16 27.94
#16 27.94 copy-resources:
#16 27.94
#16 27.94 compile:
#16 28.20 [resolver:resolve] Resolving artifacts
#16 28.21
#16 28.21 tests.jar:
#16 28.21 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 28.22 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.22 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.23
#16 28.23 jars:
#16 28.23
#16 28.23 tools:
#16 28.23 [echo] ----------=========== bioformats_package ===========----------
#16 28.32 [echo] isSnapshot = true
#16 28.49
#16 28.49 init-timestamp:
#16 28.49
#16 28.49 bundle:
#16 28.73 [resolver:resolve] Resolving artifacts
#16 28.74 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.79 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.81 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.82 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.94 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.95 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.17 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.26 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.31 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.33 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.33 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.49 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.14 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.29 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.55 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.98 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.00 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.13 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.16 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.42 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.25 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.74 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.75 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.76 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.77 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.78 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.80 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.16 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.26 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.63 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.45 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.06 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 41.07 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 41.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 41.17 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 41.17 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.18
#16 41.18 BUILD SUCCESSFUL
#16 41.18 Total time: 40 seconds
#16 DONE 44.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:458c96a8ffa1d70a628ad93feeb0416b4d9cd6fc2e76a082ffca90e060f534b7 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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