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#14 401.0 Progress (3): 310/467 kB | 131 kB | 4.1/16 kB
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#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
#14 401.0 Progress (4): 467 kB | 16 kB | 6.3 kB | 4.1/37 kB
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#14 401.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-jackson/1.7/siesta-jackson-1.7.jar (6.3 kB at 35 kB/s)
#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-json-provider/2.3.1/jackson-jaxrs-json-provider-2.3.1.jar
#14 401.0 Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.jar (467 kB at 2.5 MB/s)
#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-base/2.3.1/jackson-jaxrs-base-2.3.1.jar
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#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/module/jackson-module-jaxb-annotations/2.3.1/jackson-module-jaxb-annotations-2.3.1.jar
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#14 401.0 Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar (198 kB at 938 kB/s)
#14 401.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar
#14 401.0 Progress (3): 275/914 kB | 28 kB | 32 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/jcl-over-slf4j/1.7.7/jcl-over-slf4j-1.7.7.jar (17 kB at 68 kB/s)
#14 401.1 Progress (4): 889/914 kB | 184/282 kB | 172/591 kB | 49/121 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar
#14 401.1 Progress (4): 898/914 kB | 193/282 kB | 176/591 kB | 57/121 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar (914 kB at 3.5 MB/s)
#14 401.1 Progress (4): 282 kB | 442/591 kB | 121 kB | 20/27 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar
#14 401.1 Progress (4): 282 kB | 446/591 kB | 121 kB | 27 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.jar (121 kB at 464 kB/s)
#14 401.1 Progress (3): 282 kB | 512/591 kB | 27 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
#14 401.1 Progress (3): 282 kB | 516/591 kB | 27 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar (282 kB at 1.1 MB/s)
#14 401.1 Progress (2): 545/591 kB | 27 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 401.1 Progress (2): 549/591 kB | 27 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 100 kB/s)
#14 401.1 Progress (2): 591 kB | 8.2/50 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 401.1 Progress (2): 591 kB | 12/50 kB
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#14 401.1 Progress (3): 232 kB | 90 kB | 20/428 kB
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#14 401.1 Progress (2): 90 kB | 78/428 kB
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#14 401.1 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar (428 kB at 1.3 MB/s)
#14 401.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
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#14 401.3 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
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#14 401.4 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/parent/2.3.0/parent-2.3.0.pom
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#14 401.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
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#14 401.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
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#14 401.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
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#14 401.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.pom
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#14 401.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.pom
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#14 401.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.pom
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#14 401.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.pom
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#14 401.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting/2.0.7/maven-reporting-2.0.7.pom
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#14 401.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0-alpha-7/doxia-sink-api-1.0-alpha-7.pom
#14 401.7 Progress (1): 424 B
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#14 401.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia/1.0-alpha-7/doxia-1.0-alpha-7.pom
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#14 401.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.pom
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#14 401.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.pom
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#14 401.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.pom
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#14 401.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.pom
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#14 403.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar
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Progre
#14 403.9 [output clipped, log limit 2MiB reached]
#14 501.7 SLF4J: No SLF4J providers were found.
#14 501.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 501.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 517.3s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 1.465 Buildfile: /bio-formats-build/bioformats/build.xml
#16 3.012 [echo] isSnapshot = true
#16 3.552
#16 3.552 copy-jars:
#16 3.552
#16 3.552 deps-formats-api:
#16 3.650 [echo] isSnapshot = true
#16 3.708
#16 3.708 install-pom:
#16 3.912 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.928 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.933 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.935
#16 3.935 jar-formats-api:
#16 4.123 [echo] isSnapshot = true
#16 4.334
#16 4.334 init-title:
#16 4.334 [echo] ----------=========== formats-api ===========----------
#16 4.334
#16 4.334 init-timestamp:
#16 4.340
#16 4.340 init:
#16 4.341
#16 4.341 copy-resources:
#16 4.342 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.356 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.358
#16 4.358 compile:
#16 4.550 [resolver:resolve] Resolving artifacts
#16 4.578 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.847 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.447 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.448 [javac] import loci.common.ReflectedUniverse;
#16 5.448 [javac] ^
#16 5.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.648 [javac] int currentIndex = r.getCoreIndex();
#16 5.648 [javac] ^
#16 5.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.648 [javac] r.setCoreIndex(coreIndex);
#16 5.648 [javac] ^
#16 5.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.649 [javac] r.setCoreIndex(currentIndex);
#16 5.649 [javac] ^
#16 5.849 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.849 [javac] public void setCoreIndex(int no) {
#16 5.849 [javac] ^
#16 5.849 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.849 [javac] public int getCoreIndex() {
#16 5.849 [javac] ^
#16 5.849 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.850 [javac] public int coreIndexToSeries(int index)
#16 5.850 [javac] ^
#16 5.850 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.850 [javac] public int seriesToCoreIndex(int series)
#16 5.850 [javac] ^
#16 5.850 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.850 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.850 [javac] ^
#16 5.950 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.951 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.951 [javac] ^
#16 5.951 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.951 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.951 [javac] ^
#16 5.951 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.951 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.951 [javac] ^
#16 5.951 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.951 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.951 [javac] ^
#16 6.051 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.051 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.052 [javac] ^
#16 6.052 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.052 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.052 [javac] ^
#16 6.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.152 [javac] public void setCoreIndex(int no) {
#16 6.152 [javac] ^
#16 6.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.152 [javac] public int getCoreIndex() {
#16 6.152 [javac] ^
#16 6.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.152 [javac] public int coreIndexToSeries(int index) {
#16 6.152 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.153 [javac] public int seriesToCoreIndex(int series) {
#16 6.153 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.153 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.153 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.153 [javac] return getReader().getCoreMetadataList();
#16 6.153 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.153 [javac] return getReader().getCoreIndex();
#16 6.153 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.153 [javac] getReader().setCoreIndex(no);
#16 6.153 [javac] ^
#16 6.153 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.154 [javac] return getReader().seriesToCoreIndex(series);
#16 6.154 [javac] ^
#16 6.154 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.154 [javac] return getReader().coreIndexToSeries(index);
#16 6.154 [javac] ^
#16 6.154 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.154 [javac] public void setCoreIndex(int no) {
#16 6.154 [javac] ^
#16 6.154 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.154 [javac] public int getCoreIndex() {
#16 6.154 [javac] ^
#16 6.154 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.154 [javac] public int coreIndexToSeries(int index) {
#16 6.154 [javac] ^
#16 6.154 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.154 [javac] public int seriesToCoreIndex(int series) {
#16 6.154 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.155 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.155 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.155 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.155 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.155 [javac] return reader.getCoreIndex();
#16 6.155 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.155 [javac] reader.setCoreIndex(no);
#16 6.155 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.155 [javac] return reader.seriesToCoreIndex(series);
#16 6.155 [javac] ^
#16 6.155 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.155 [javac] return reader.coreIndexToSeries(index);
#16 6.155 [javac] ^
#16 6.356 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.356 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.356 [javac] 36 warnings
#16 6.398
#16 6.398 formats-api.jar:
#16 6.398 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.422 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.455 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.459 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.478 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.479 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.482 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.483
#16 6.483 deps-turbojpeg:
#16 6.483
#16 6.483 jar-turbojpeg:
#16 6.597 [echo] isSnapshot = true
#16 6.792
#16 6.792 init-title:
#16 6.792 [echo] ----------=========== turbojpeg ===========----------
#16 6.792
#16 6.792 init-timestamp:
#16 6.793
#16 6.793 init:
#16 6.793
#16 6.793 copy-resources:
#16 6.793 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.795
#16 6.795 compile:
#16 6.805 [resolver:resolve] Resolving artifacts
#16 6.809 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.011 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.705 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.705 [javac] protected void finalize() throws Throwable {
#16 7.705 [javac] ^
#16 7.705 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.705 [javac] super.finalize();
#16 7.705 [javac] ^
#16 7.705 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.705 [javac] protected void finalize() throws Throwable {
#16 7.705 [javac] ^
#16 7.705 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.706 [javac] super.finalize();
#16 7.706 [javac] ^
#16 7.706 [javac] 5 warnings
#16 7.706
#16 7.706 jar:
#16 7.711 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.899 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 7.908 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 7.967 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 7.969 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 7.973 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.975
#16 7.975 deps-formats-bsd:
#16 7.975
#16 7.975 jar-formats-bsd:
#16 8.081 [echo] isSnapshot = true
#16 8.246
#16 8.246 init-title:
#16 8.246 [echo] ----------=========== formats-bsd ===========----------
#16 8.246
#16 8.246 init-timestamp:
#16 8.246
#16 8.246 init:
#16 8.246
#16 8.246 copy-resources:
#16 8.247 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.250 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.251
#16 8.251 compile:
#16 8.480 [resolver:resolve] Resolving artifacts
#16 8.511 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.821 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 10.02 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.02 [javac] import loci.common.ReflectedUniverse;
#16 10.02 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] core.size() != reader.getCoreMetadataList().size())
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] int n = reader.getCoreMetadataList().size();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.62 [javac] reader.setCoreIndex(coreIndex);
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] int n = reader.getCoreMetadataList().size();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] int n = reader.getCoreMetadataList().size();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.62 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] int n = reader.getCoreMetadataList().size();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.62 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.62 [javac] int n = reader.getCoreMetadataList().size();
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.62 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.62 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.62 [javac] ^
#16 10.62 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.62 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.62 [javac] ^
#16 10.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.63 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 10.63 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.73 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.93 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.93 [javac] ^
#16 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.13 [javac] BitWriter out = new BitWriter();
#16 11.13 [javac] ^
#16 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.13 [javac] BitWriter out = new BitWriter();
#16 11.13 [javac] ^
#16 11.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.23 [javac] return new Double(v);
#16 11.23 [javac] ^
#16 11.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.93 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.93 [javac] ^
#16 11.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.93 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.93 [javac] ^
#16 11.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.93 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.93 [javac] ^
#16 12.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 12.03 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 12.03 [javac] ^
#16 12.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 12.23 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 12.23 [javac] ^
#16 12.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 12.33 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 12.33 [javac] ^
#16 12.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 12.43 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 12.43 [javac] ^
#16 12.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 12.43 [javac] protected ReflectedUniverse r;
#16 12.43 [javac] ^
#16 12.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 12.43 [javac] r = new ReflectedUniverse();
#16 12.43 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 12.53 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 12.53 [javac] ^
#16 12.53 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 12.53 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 12.53 [javac] ^
#16 12.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 12.63 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 12.63 [javac] ^
#16 12.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 12.63 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 12.63 [javac] ^
#16 12.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 12.63 [javac] result[i] = new Double(readNumber().doubleValue());
#16 12.63 [javac] ^
#16 12.73 [javac] Note: Some input files use unchecked or unsafe operations.
#16 12.73 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 12.73 [javac] 46 warnings
#16 12.77
#16 12.77 formats-bsd.jar:
#16 12.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.90 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 12.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 12.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 12.95 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.95 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.95
#16 12.95 deps-formats-gpl:
#16 12.95
#16 12.95 jar-formats-gpl:
#16 13.07 [echo] isSnapshot = true
#16 13.24
#16 13.24 init-title:
#16 13.24 [echo] ----------=========== formats-gpl ===========----------
#16 13.24
#16 13.24 init-timestamp:
#16 13.24
#16 13.24 init:
#16 13.24
#16 13.24 copy-resources:
#16 13.24 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.25 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.25
#16 13.25 compile:
#16 14.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 14.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 14.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 15.04 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 15.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 15.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 15.10 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 15.23 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 15.54 [resolver:resolve] Resolving artifacts
#16 15.55 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 15.55 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 15.59 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 15.59 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 15.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 15.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 16.02 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 16.03 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 16.05 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 16.96 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 18.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.46 [javac] import loci.formats.codec.BitWriter;
#16 18.46 [javac] ^
#16 18.56 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.56 [javac] import loci.formats.codec.BitWriter;
#16 18.56 [javac] ^
#16 20.66 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 20.66 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 20.66 [javac] ^
#16 20.66 [javac] cast to Object for a varargs call
#16 20.66 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 20.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 20.76 [javac] BitWriter bits = null;
#16 20.76 [javac] ^
#16 20.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 20.76 [javac] bits = new BitWriter(planes[index].length / 8);
#16 20.76 [javac] ^
#16 21.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 21.16 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 21.16 [javac] ^
#16 21.66 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 21.66 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 21.66 [javac] ^
#16 21.66 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 21.66 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 21.66 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 22.16 [javac] List<Attribute> attributes = variable.getAttributes();
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 22.16 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 22.16 [javac] String groupName = group.getName();
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 22.16 [javac] List<Attribute> attributes = group.getAttributes();
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 22.16 [javac] String attributeName = attribute.getName();
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 22.16 [javac] String variableName = variable.getName();
#16 22.16 [javac] ^
#16 22.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 22.16 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 22.16 [javac] ^
#16 22.24 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.24 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.24 [javac] 16 warnings
#16 22.24
#16 22.24 formats-gpl.jar:
#16 22.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 22.38 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 22.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 22.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 22.41 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.41 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 22.50
#16 22.50 deps-bio-formats-plugins:
#16 22.50
#16 22.50 jar-bio-formats-plugins:
#16 22.61 [echo] isSnapshot = true
#16 22.78
#16 22.78 init-title:
#16 22.78 [echo] ----------=========== bio-formats_plugins ===========----------
#16 22.78
#16 22.78 init-timestamp:
#16 22.78
#16 22.78 init:
#16 22.78
#16 22.78 copy-resources:
#16 22.78 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 22.78 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 22.78
#16 22.78 compile:
#16 24.27 [resolver:resolve] Resolving artifacts
#16 24.80 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 26.81 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 29.01 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.01 [javac] import loci.common.ReflectedUniverse;
#16 29.01 [javac] ^
#16 29.01 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.01 [javac] import loci.common.ReflectedUniverse;
#16 29.01 [javac] ^
#16 29.41 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 29.41 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 29.41 [javac] ^
#16 29.51 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.51 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 29.51 [javac] ^
#16 29.51 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.51 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 29.51 [javac] ^
#16 29.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.61 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 29.61 [javac] ^
#16 29.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 29.61 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 29.61 [javac] ^
#16 30.01 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 30.01 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 30.01 [javac] 8 warnings
#16 30.04
#16 30.04 bio-formats-plugins.jar:
#16 30.04 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 30.07 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 30.08 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 30.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 30.32 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 30.36 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 30.42
#16 30.42 deps-bio-formats-tools:
#16 30.42
#16 30.42 jar-bio-formats-tools:
#16 30.53 [echo] isSnapshot = true
#16 30.71
#16 30.71 init-title:
#16 30.71 [echo] ----------=========== bio-formats-tools ===========----------
#16 30.71
#16 30.71 init-timestamp:
#16 30.71
#16 30.71 init:
#16 30.71
#16 30.71 copy-resources:
#16 30.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 30.71
#16 30.71 compile:
#16 31.76 [resolver:resolve] Resolving artifacts
#16 31.77 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 32.08 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 33.26 [javac] 1 warning
#16 33.26
#16 33.26 bio-formats-tools.jar:
#16 33.27 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 33.28 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 33.28 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 33.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 33.35 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 33.35 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 33.36
#16 33.36 deps-tests:
#16 33.36
#16 33.36 jar-tests:
#16 33.47 [echo] isSnapshot = true
#16 33.64
#16 33.64 init-title:
#16 33.64 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 33.64
#16 33.64 init-timestamp:
#16 33.64
#16 33.64 init:
#16 33.64
#16 33.64 copy-resources:
#16 33.64 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 33.64
#16 33.64 compile:
#16 33.96 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 34.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 34.07 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 34.46 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 34.86 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 34.91 [resolver:resolve] Resolving artifacts
#16 34.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 34.96 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 34.98 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 35.37 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 35.75 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 35.76 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 36.36 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 37.56 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 37.56 [javac] int index = unflattenedReader.getCoreIndex();
#16 37.56 [javac] ^
#16 37.56 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 37.56 [javac] reader.setCoreIndex(index);
#16 37.56 [javac] ^
#16 37.66 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 37.66 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 37.66 [javac] ^
#16 37.66 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 37.66 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 37.66 [javac] ^
#16 37.97 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 37.97 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 37.97 [javac] ^
#16 37.97 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 37.97 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 37.97 [javac] ^
#16 37.97 [javac] Note: Some input files use unchecked or unsafe operations.
#16 37.97 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 37.97 [javac] 7 warnings
#16 38.03
#16 38.03 tests.jar:
#16 38.03 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 38.05 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 38.05 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 38.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 38.06 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 38.06 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 38.07
#16 38.07 jars:
#16 38.07
#16 38.07 copy-jars:
#16 38.07
#16 38.07 deps-formats-api:
#16 38.12 [echo] isSnapshot = true
#16 38.16
#16 38.16 install-pom:
#16 38.32 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 38.32 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 38.32 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 38.32
#16 38.32 jar-formats-api:
#16 38.41 [echo] isSnapshot = true
#16 38.61
#16 38.61 init-title:
#16 38.61 [echo] ----------=========== formats-api ===========----------
#16 38.61
#16 38.61 init-timestamp:
#16 38.61
#16 38.61 init:
#16 38.61
#16 38.61 copy-resources:
#16 38.61
#16 38.61 compile:
#16 38.77 [resolver:resolve] Resolving artifacts
#16 38.78
#16 38.78 formats-api.jar:
#16 38.80 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 38.80 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 38.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 38.80 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 38.80 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 38.81
#16 38.81 deps-turbojpeg:
#16 38.81
#16 38.81 jar-turbojpeg:
#16 38.90 [echo] isSnapshot = true
#16 39.05
#16 39.05 init-title:
#16 39.05 [echo] ----------=========== turbojpeg ===========----------
#16 39.05
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#16 39.05
#16 39.05 init:
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#16 39.05 copy-resources:
#16 39.05
#16 39.05 compile:
#16 39.06 [resolver:resolve] Resolving artifacts
#16 39.07
#16 39.07 jar:
#16 39.07 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 39.08 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 39.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 39.08 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.09 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 39.09
#16 39.09 deps-formats-bsd:
#16 39.09
#16 39.09 jar-formats-bsd:
#16 39.18 [echo] isSnapshot = true
#16 39.35
#16 39.35 init-title:
#16 39.35 [echo] ----------=========== formats-bsd ===========----------
#16 39.35
#16 39.35 init-timestamp:
#16 39.35
#16 39.35 init:
#16 39.35
#16 39.35 copy-resources:
#16 39.35
#16 39.35 compile:
#16 39.82 [resolver:resolve] Resolving artifacts
#16 39.83
#16 39.83 formats-bsd.jar:
#16 39.87 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 39.88 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 39.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 39.88 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.88 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 39.88
#16 39.88 deps-formats-gpl:
#16 39.88
#16 39.88 jar-formats-gpl:
#16 39.97 [echo] isSnapshot = true
#16 40.12
#16 40.12 init-title:
#16 40.12 [echo] ----------=========== formats-gpl ===========----------
#16 40.12
#16 40.12 init-timestamp:
#16 40.12
#16 40.12 init:
#16 40.12
#16 40.12 copy-resources:
#16 40.12
#16 40.12 compile:
#16 40.36 [resolver:resolve] Resolving artifacts
#16 40.38
#16 40.38 formats-gpl.jar:
#16 40.42 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 40.42 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 40.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 40.43 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.43 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 40.43
#16 40.43 deps-bio-formats-plugins:
#16 40.43
#16 40.43 jar-bio-formats-plugins:
#16 40.56 [echo] isSnapshot = true
#16 40.71
#16 40.71 init-title:
#16 40.71 [echo] ----------=========== bio-formats_plugins ===========----------
#16 40.71
#16 40.71 init-timestamp:
#16 40.71
#16 40.71 init:
#16 40.71
#16 40.71 copy-resources:
#16 40.71
#16 40.71 compile:
#16 40.94 [resolver:resolve] Resolving artifacts
#16 40.96
#16 40.96 bio-formats-plugins.jar:
#16 40.97 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 40.97 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 40.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 40.98 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.98 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 40.98
#16 40.98 deps-bio-formats-tools:
#16 40.98
#16 40.98 jar-bio-formats-tools:
#16 41.06 [echo] isSnapshot = true
#16 41.21
#16 41.21 init-title:
#16 41.21 [echo] ----------=========== bio-formats-tools ===========----------
#16 41.21
#16 41.21 init-timestamp:
#16 41.21
#16 41.21 init:
#16 41.21
#16 41.21 copy-resources:
#16 41.21
#16 41.21 compile:
#16 41.45 [resolver:resolve] Resolving artifacts
#16 41.46
#16 41.46 bio-formats-tools.jar:
#16 41.47 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 41.47 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 41.47 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 41.47 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.47 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 41.48
#16 41.48 deps-tests:
#16 41.48
#16 41.48 jar-tests:
#16 41.57 [echo] isSnapshot = true
#16 41.73
#16 41.73 init-title:
#16 41.73 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 41.73
#16 41.73 init-timestamp:
#16 41.73
#16 41.73 init:
#16 41.73
#16 41.73 copy-resources:
#16 41.73
#16 41.73 compile:
#16 42.01 [resolver:resolve] Resolving artifacts
#16 42.02
#16 42.02 tests.jar:
#16 42.03 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 42.03 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 42.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 42.04 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 42.04 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 42.04
#16 42.04 jars:
#16 42.04
#16 42.04 tools:
#16 42.04 [echo] ----------=========== bioformats_package ===========----------
#16 42.17 [echo] isSnapshot = true
#16 42.35
#16 42.35 init-timestamp:
#16 42.35
#16 42.35 bundle:
#16 42.64 [resolver:resolve] Resolving artifacts
#16 42.65 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.68 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.70 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.77 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.77 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.84 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.86 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.00 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.02 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.32 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.37 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.39 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.45 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.46 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.48 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.48 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.66 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.26 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.27 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.36 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.37 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.37 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.43 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.58 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.59 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.98 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.09 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.17 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.21 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.21 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.25 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.28 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.88 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.91 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.94 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.06 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.18 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.19 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.24 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.25 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.50 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.58 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.65 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.08 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.09 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.04 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.10 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.33 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.39 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.40 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.43 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.85 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.86 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.87 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.88 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.89 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.00 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.46 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.57 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.97 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 55.68 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 56.32 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 56.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 56.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 56.36 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 56.44 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 56.44
#16 56.44 BUILD SUCCESSFUL
#16 56.44 Total time: 54 seconds
#16 DONE 56.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 31.3s done
#18 writing image sha256:10fa9490de920df0d8f42dee0a8a026d3ecd7358c1c860f1ac85edb4facb7f99 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 31.3s
Finished: SUCCESS
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