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Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-push/bio-formats-build/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/ome/bio-formats-build > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision e7ea0c022f87bdf67c4090bdcd8c10c2f2014607 (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f e7ea0c022f87bdf67c4090bdcd8c10c2f2014607 # timeout=10 Commit message: "Merge pull request #568 from ome/dependabot/submodules/bio-formats-documentation-817d09e" > git rev-list --no-walk e7ea0c022f87bdf67c4090bdcd8c10c2f2014607 # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.ome-common-java.url # timeout=10 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10 > git config --get submodule.ome-model.url # timeout=10 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10 > git config --get submodule.ome-poi.url # timeout=10 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10 > git config --get submodule.ome-mdbtools.url # timeout=10 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10 > git config --get submodule.ome-jai.url # timeout=10 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10 > git config --get submodule.ome-codecs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10 > git config --get submodule.ome-metakit.url # timeout=10 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10 > git config --get submodule.ome-stubs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10 > git config --get submodule.bioformats.url # timeout=10 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10 > git config --get submodule.bio-formats-documentation.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10 > git config --get submodule.bio-formats-examples.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10 > git config --get submodule.ZarrReader.url # timeout=10 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10 > git submodule update --init --recursive --remote ome-common-java # timeout=10 > git submodule update --init --recursive --remote ome-model # timeout=10 > git submodule update --init --recursive --remote ome-poi # timeout=10 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10 > git submodule update --init --recursive --remote ome-jai # timeout=10 > git submodule update --init --recursive --remote ome-codecs # timeout=10 > git submodule update --init --recursive --remote ome-metakit # timeout=10 > git submodule update --init --recursive --remote ome-stubs # timeout=10 > git submodule update --init --recursive --remote bioformats # timeout=10 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10 > git submodule update --init --recursive --remote ZarrReader # timeout=10 [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins1873159522371317033.sh + python3 -mvenv venv + source /home/omero/workspace/BIOFORMATS-push/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-push/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.0) + pip install -U scc Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1) Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) + PATH=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts:/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + MERGE_OPTIONS='--no-ask --reset --comment -S success-only' + cd bio-formats-build + echo 'Merge base repository (no submodule updates)' Merge base repository (no submodule updates) + scc merge --no-ask --reset --comment -S success-only --shallow master 2024-03-18 00:01:02,930 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-03-18 00:01:02,931 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-03-18 00:01:02,931 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-03-18 00:01:02,931 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-03-18 00:01:02,931 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-03-18 00:01:02,931 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-03-18 00:01:21,873 [ scc.merge] INFO Repository: ome/bio-formats-build 2024-03-18 00:01:21,873 [ scc.merge] INFO Already up to date. 2024-03-18 00:01:21,873 [ scc.merge] INFO 2024-03-18 00:01:21,873 [ scc.merge] INFO Merged PRs: 2024-03-18 00:01:21,873 [ scc.merge] INFO - PR 567 dependabot[bot] 'Bump ZarrReader from `4deea8d` to `cf4f3f2`' 2024-03-18 00:01:21,873 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump ome-common-java from `fa81e2b` to `eca9c1c`' 2024-03-18 00:01:21,873 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump bioformats from `6815841` to `83df5ca`' 2024-03-18 00:01:21,873 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump ome-poi from `ba0d5d2` to `1fcfd18`' 2024-03-18 00:01:21,873 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump ome-codecs from `040c8b9` to `e092dea`' 2024-03-18 00:01:21,873 [ scc.merge] INFO + git submodule sync Synchronizing submodule url for 'ZarrReader' Synchronizing submodule url for 'bio-formats-documentation' Synchronizing submodule url for 'bio-formats-examples' Synchronizing submodule url for 'bioformats' Synchronizing submodule url for 'ome-codecs' Synchronizing submodule url for 'ome-common-java' Synchronizing submodule url for 'ome-jai' Synchronizing submodule url for 'ome-mdbtools' Synchronizing submodule url for 'ome-metakit' Synchronizing submodule url for 'ome-model' Synchronizing submodule url for 'ome-poi' Synchronizing submodule url for 'ome-stubs' + git submodule update --remote --recursive Submodule path 'ome-metakit': checked out '21bd75668a005effa65cb89404623d056fcee9b2' + echo 'Merge all submodules using repository configuration:' Merge all submodules using repository configuration: + cat scripts/repositories.yml base-branch: master submodules: ome-common-java: base-branch: master bioformats: base-branch: develop bio-formats-documentation: base-branch: master bio-formats-examples: base-branch: master ome-codecs: base-branch: master ome-common-java: base-branch: master ome-jai: base-branch: master ome-mdbtools: base-branch: master ome-metakit: base-branch: master ome-model: base-branch: master ome-poi: base-branch: master ome-stubs: base-branch: master ZarrReader: base-branch: main ++ pwd + scc merge --repository-config=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts/repositories.yml --no-ask --reset --comment -S success-only --update-gitmodules --push merge_ci master Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2024-03-18 00:01:37,698 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2024-03-18 00:01:57,160 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-03-18 00:01:57,161 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-03-18 00:01:57,161 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-03-18 00:01:57,161 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-03-18 00:01:57,161 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-03-18 00:01:57,161 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-03-18 00:02:15,017 [ scc.git] INFO Overriding base-branch from master to main 2024-03-18 00:02:41,784 [ scc.git] INFO - PR 82 dgault 'Reintroduce S3FileSystemStore' Conflicting PR. Removed from build [BIOFORMATS-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/BIOFORMATS-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/BIOFORMATS-push/5/consoleText) for more details. Possible conflicts: - PR #71 sbesson 'Bump Bio-Formats to version 7.1.0' - pom.xml - PR #74 dgault 'JZarr: Add jackson.core and jackson-databind to exclsions' - pom.xml - PR #80 jburel 'Review action' - pom.xml --conflicts 2024-03-18 00:02:46,559 [ scc.git] INFO Overriding base-branch from master to develop 2024-03-18 00:04:07,219 [ scc.git] INFO - PR 174 jburel 'Remove docs' Conflicting PR. Removed from build [BIOFORMATS-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/BIOFORMATS-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/BIOFORMATS-push/5/consoleText) for more details. Possible conflicts: - Upstream changes - docs/sphinx/pom.xml --conflicts 2024-03-18 00:04:21,651 [ scc.merge] INFO Repository: ome/bio-formats-build 2024-03-18 00:04:21,651 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,651 [ scc.merge] INFO 2024-03-18 00:04:21,651 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,651 [ scc.merge] INFO - PR 567 dependabot[bot] 'Bump ZarrReader from `4deea8d` to `cf4f3f2`' 2024-03-18 00:04:21,651 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump ome-common-java from `fa81e2b` to `eca9c1c`' 2024-03-18 00:04:21,651 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump bioformats from `6815841` to `83df5ca`' 2024-03-18 00:04:21,651 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump ome-poi from `ba0d5d2` to `1fcfd18`' 2024-03-18 00:04:21,651 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump ome-codecs from `040c8b9` to `e092dea`' 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Repository: ome/ZarrReader 2024-03-18 00:04:21,652 [ scc.merge] INFO Excluded PRs: 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 73 dgault 'Update ReadMe and Change Log' (status: failure) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment) 2024-03-18 00:04:21,652 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 71 sbesson 'Bump Bio-Formats to version 7.1.0' 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 74 dgault 'JZarr: Add jackson.core and jackson-databind to exclsions' 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 75 dgault 'Update handling and parsing of acquisition metadata' 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 80 jburel 'Review action' 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 81 jburel 'add Java 17 to testing matrix' 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Conflicting PRs (not included): 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 82 dgault 'Reintroduce S3FileSystemStore' 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Repository: ome/bio-formats-documentation 2024-03-18 00:04:21,652 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Repository: ome/bio-formats-examples 2024-03-18 00:04:21,652 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop' 2024-03-18 00:04:21,652 [ scc.merge] INFO 2024-03-18 00:04:21,652 [ scc.merge] INFO Repository: openmicroscopy/bioformats 2024-03-18 00:04:21,652 [ scc.merge] INFO Excluded PRs: 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 4167 melissalinkert 'DICOM: treat ultrasound ECG data as timelapse' (stage: draft) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude) 2024-03-18 00:04:21,652 [ scc.merge] INFO - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15) 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking) 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude) 2024-03-18 00:04:21,653 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4117 ed-scanlon 'Work-around for breaking change in CellSens 4.1' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4147 TBlackmore 'Added support for ColumbusReader to import data with z stacks' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4154 melissalinkert 'Update GitHub actions versions and add M1/Java 21 build' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4159 melissalinkert 'Turn off file-leak-detector if tests are run with Java 21' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4162 melissalinkert 'Remove duplicate enum check and add clarifying comment' 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 4163 melissalinkert 'SimplePCI: fix Z position handling' 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Repository: ome/ome-codecs 2024-03-18 00:04:21,653 [ scc.merge] INFO Excluded PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 24 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (status: failure) 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 21 dgault 'Replace one-jai with jai-imageio-jpeg2000' (stage: draft) 2024-03-18 00:04:21,653 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 36 sbesson 'Use Maven profiles to handle different versions of TestNG' 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Repository: ome/ome-common-java 2024-03-18 00:04:21,653 [ scc.merge] INFO Excluded PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 72 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (label: exclude) 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru) 2024-03-18 00:04:21,653 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 88 sbesson 'Use Maven profiles to handle different versions of TestNG' 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Repository: ome/ome-jai 2024-03-18 00:04:21,653 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,653 [ scc.merge] INFO - PR 7 melissalinkert 'Add JDK21 to build matrix' 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,653 [ scc.merge] INFO Repository: ome/ome-mdbtools 2024-03-18 00:04:21,653 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,653 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 13 melissalinkert 'Add JDK 21 to build matrix' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Repository: ome/ome-metakit 2024-03-18 00:04:21,654 [ scc.merge] INFO Updating 8ead2f6..21bd756 2024-03-18 00:04:21,654 [ scc.merge] INFO Previously merged: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 20 melissalinkert 'Add JDK 21 to build matrix' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 21 sbesson 'Use Maven profiles to handle different versions of TestNG' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Repository: ome/ome-model 2024-03-18 00:04:21,654 [ scc.merge] INFO Excluded PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft) 2024-03-18 00:04:21,654 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 185 melissalinkert 'Add model object API to clear each list of associated objects' 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 187 melissalinkert 'Add JDK 21 to build matrix' 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 188 sbesson 'Use Maven profiles to handle different versions of TestNG' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Conflicting PRs (not included): 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 174 jburel 'Remove docs' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Repository: ome/ome-poi 2024-03-18 00:04:21,654 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 15 sbesson 'Add JDK 21 to the build matrix' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Repository: ome/ome-stubs 2024-03-18 00:04:21,654 [ scc.merge] INFO Already up to date. 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:21,654 [ scc.merge] INFO Merged PRs: 2024-03-18 00:04:21,654 [ scc.merge] INFO - PR 11 melissalinkert 'Add JDK 21 to build matrix' 2024-03-18 00:04:21,654 [ scc.merge] INFO 2024-03-18 00:04:46,367 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/bio-formats-build/tree/merge_ci + echo 'Update maven component versions' Update maven component versions + update-versions OMEZarrReader=0.4.2-SNAPSHOT bio-formats-documentation=8.0.0-SNAPSHOT bio-formats-examples=8.0.0-SNAPSHOT bio-formats_plugins=8.0.0-SNAPSHOT bio-formats-tools=8.0.0-SNAPSHOT bioformats_package=8.0.0-SNAPSHOT turbojpeg=8.0.0-SNAPSHOT formats-api=8.0.0-SNAPSHOT formats-bsd=8.0.0-SNAPSHOT formats-gpl=8.0.0-SNAPSHOT test-suite=8.0.0-SNAPSHOT pom-bio-formats=8.0.0-SNAPSHOT bioformats=8.0.0-SNAPSHOT ome-codecs=1.0.2-SNAPSHOT ome-common=6.0.22-SNAPSHOT ome-jai=0.1.3-SNAPSHOT ome-mdbtools=5.3.3-SNAPSHOT metakit=5.3.7-SNAPSHOT ome-model-doc=6.3.5-SNAPSHOT ome-xml=6.3.5-SNAPSHOT specification=6.3.5-SNAPSHOT ome-model=6.3.5-SNAPSHOT ome-poi=5.3.9-SNAPSHOT mipav-stubs=6.0.2-SNAPSHOT ome-stubs=6.0.2-SNAPSHOT + echo 'Commit all component version changes' Commit all component version changes + git submodule foreach 'git add -u' Entering 'ZarrReader' Entering 'bio-formats-documentation' Entering 'bio-formats-examples' Entering 'bioformats' Entering 'ome-codecs' Entering 'ome-common-java' Entering 'ome-jai' Entering 'ome-mdbtools' Entering 'ome-metakit' Entering 'ome-model' Entering 'ome-poi' Entering 'ome-stubs' + git submodule foreach 'git commit -m '\''Update component versions'\'' || true' Entering 'ZarrReader' HEAD detached from cf4f3f2 nothing to commit, working tree clean Entering 'bio-formats-documentation' [detached HEAD 39a72da0] Update component versions 1 file changed, 7 insertions(+), 7 deletions(-) Entering 'bio-formats-examples' [detached HEAD a205361] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'bioformats' [detached HEAD 7df838fc66] Update component versions 1 file changed, 9 insertions(+), 9 deletions(-) Entering 'ome-codecs' [detached HEAD d5e5a49] Update component versions 1 file changed, 2 insertions(+), 2 deletions(-) Entering 'ome-common-java' HEAD detached from eca9c1c nothing to commit, working tree clean Entering 'ome-jai' HEAD detached from 6b7e421 nothing to commit, working tree clean Entering 'ome-mdbtools' HEAD detached from cdb3552 nothing to commit, working tree clean Entering 'ome-metakit' [detached HEAD 504c5eb] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-model' [detached HEAD f9ff92aa] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-poi' [detached HEAD 61b0204] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-stubs' HEAD detached from a17529e nothing to commit, working tree clean + echo 'Push all branches' Push all branches ++ git config github.user + user=snoopycrimecop + git submodule foreach 'git push -f git@github.com:snoopycrimecop/${path}.git HEAD:merge_ci' Entering 'ZarrReader' To github.com:snoopycrimecop/ZarrReader.git + a240646...b89b3b8 HEAD -> merge_ci (forced update) Entering 'bio-formats-documentation' To github.com:snoopycrimecop/bio-formats-documentation.git + e9d61098...39a72da0 HEAD -> merge_ci (forced update) Entering 'bio-formats-examples' To github.com:snoopycrimecop/bio-formats-examples.git + 3efec16...a205361 HEAD -> merge_ci (forced update) Entering 'bioformats' To github.com:snoopycrimecop/bioformats.git + e7f8c6d2ae...7df838fc66 HEAD -> merge_ci (forced update) Entering 'ome-codecs' To github.com:snoopycrimecop/ome-codecs.git + 80eabb0...d5e5a49 HEAD -> merge_ci (forced update) Entering 'ome-common-java' To github.com:snoopycrimecop/ome-common-java.git + 0f9fa96...d364e7b HEAD -> merge_ci (forced update) Entering 'ome-jai' To github.com:snoopycrimecop/ome-jai.git + d31a847...0edf147 HEAD -> merge_ci (forced update) Entering 'ome-mdbtools' To github.com:snoopycrimecop/ome-mdbtools.git + 349496b...0ddf355 HEAD -> merge_ci (forced update) Entering 'ome-metakit' To github.com:snoopycrimecop/ome-metakit.git + 1776c3a...504c5eb HEAD -> merge_ci (forced update) Entering 'ome-model' To github.com:snoopycrimecop/ome-model.git + 9b438a15...f9ff92aa HEAD -> merge_ci (forced update) Entering 'ome-poi' To github.com:snoopycrimecop/ome-poi.git + a7bfe0d...61b0204 HEAD -> merge_ci (forced update) Entering 'ome-stubs' To github.com:snoopycrimecop/ome-stubs.git + 21fb4dd...505505e HEAD -> merge_ci (forced update) + echo 'Commit all component version changes' Commit all component version changes + git add -u + git commit -m 'Update component versions' [detached HEAD 523b86f] Update component versions 7 files changed, 7 insertions(+), 7 deletions(-) + git push -f git@github.com:snoopycrimecop/bio-formats-build.git HEAD:merge_ci To github.com:snoopycrimecop/bio-formats-build.git + aa20d2d...523b86f HEAD -> merge_ci (forced update) [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins12811084985041916423.sh + mkdir -p /home/omero/workspace/BIOFORMATS-push/target + cd /home/omero/workspace/BIOFORMATS-push/target + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + cd /home/omero/workspace/BIOFORMATS-push/bio-formats-build + foreach-get-version + foreach-get-version-as-property Archiving artifacts Finished: SUCCESS