Skip to content

Console Output

Started by upstream project "Trigger" build number 93
originally caused by:
 Started by timer
Running as SYSTEM
Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-push/bio-formats-build/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
Fetching upstream changes from https://github.com/ome/bio-formats-build
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision a9a7db5b1f11cb259476bcd4817162dc2807c45b (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a9a7db5b1f11cb259476bcd4817162dc2807c45b # timeout=10
Commit message: "Merge pull request #600 from ome/dependabot/submodules/bio-formats-documentation-afd4c11"
 > git rev-list --no-walk a9a7db5b1f11cb259476bcd4817162dc2807c45b # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.ome-common-java.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10
 > git config --get submodule.ome-model.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10
 > git config --get submodule.ome-poi.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10
 > git config --get submodule.ome-mdbtools.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10
 > git config --get submodule.ome-jai.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10
 > git config --get submodule.ome-codecs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10
 > git config --get submodule.ome-metakit.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10
 > git config --get submodule.ome-stubs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10
 > git config --get submodule.bioformats.url # timeout=10
 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10
 > git config --get submodule.bio-formats-documentation.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10
 > git config --get submodule.bio-formats-examples.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10
 > git config --get submodule.ZarrReader.url # timeout=10
 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10
 > git submodule update --init --recursive --remote ome-common-java # timeout=10
 > git submodule update --init --recursive --remote ome-model # timeout=10
 > git submodule update --init --recursive --remote ome-poi # timeout=10
 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10
 > git submodule update --init --recursive --remote ome-jai # timeout=10
 > git submodule update --init --recursive --remote ome-codecs # timeout=10
 > git submodule update --init --recursive --remote ome-metakit # timeout=10
 > git submodule update --init --recursive --remote ome-stubs # timeout=10
 > git submodule update --init --recursive --remote bioformats # timeout=10
 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10
 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10
 > git submodule update --init --recursive --remote ZarrReader # timeout=10
[BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins9289800840821633249.sh
+ python3 -mvenv venv
+ source /home/omero/workspace/BIOFORMATS-push/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-push/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ pip install -U pip
Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.0)
+ pip install -U scc
Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1)
Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
+ PATH=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts:/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ MERGE_OPTIONS='--no-ask --reset --comment -S success-only'
+ cd bio-formats-build
+ echo 'Merge base repository (no submodule updates)'
Merge base repository (no submodule updates)
+ scc merge --no-ask --reset --comment -S success-only --shallow master
2024-06-05 00:01:49,678 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-06-05 00:01:49,678 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-06-05 00:01:49,678 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-06-05 00:01:49,678 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-06-05 00:01:49,678 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-06-05 00:01:49,678 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-06-05 00:02:05,778 [   scc.merge] INFO  Repository: ome/bio-formats-build
2024-06-05 00:02:05,778 [   scc.merge] INFO  Already up to date.
2024-06-05 00:02:05,778 [   scc.merge] INFO  
2024-06-05 00:02:05,778 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:02:05,778 [   scc.merge] INFO    - PR 604 dependabot[bot] 'Bump bio-formats-examples from `74d4def` to `9955ace`'
2024-06-05 00:02:05,778 [   scc.merge] INFO    - PR 608 dependabot[bot] 'Bump bioformats from `682bc7e` to `bf2c462`'
2024-06-05 00:02:05,778 [   scc.merge] INFO    - PR 609 dependabot[bot] 'Bump bio-formats-documentation from `afd4c11` to `7a2cfff`'
2024-06-05 00:02:05,778 [   scc.merge] INFO    - PR 610 dependabot[bot] 'Bump ome-model from `db24e3a` to `be5b189`'
2024-06-05 00:02:05,779 [   scc.merge] INFO  
+ git submodule sync
Synchronizing submodule url for 'ZarrReader'
Synchronizing submodule url for 'bio-formats-documentation'
Synchronizing submodule url for 'bio-formats-examples'
Synchronizing submodule url for 'bioformats'
Synchronizing submodule url for 'ome-codecs'
Synchronizing submodule url for 'ome-common-java'
Synchronizing submodule url for 'ome-jai'
Synchronizing submodule url for 'ome-mdbtools'
Synchronizing submodule url for 'ome-metakit'
Synchronizing submodule url for 'ome-model'
Synchronizing submodule url for 'ome-poi'
Synchronizing submodule url for 'ome-stubs'
+ git submodule update --remote --recursive
+ echo 'Merge all submodules using repository configuration:'
Merge all submodules using repository configuration:
+ cat scripts/repositories.yml
base-branch: master

submodules:
  ome-common-java:
    base-branch: master

  bioformats:
    base-branch: develop
    
  bio-formats-documentation:
    base-branch: master

  bio-formats-examples:
    base-branch: master
    
  ome-codecs:
    base-branch: master
    
  ome-common-java:
    base-branch: master
    
  ome-jai:
    base-branch: master
    
  ome-mdbtools:
    base-branch: master
    
  ome-metakit:
    base-branch: master
    
  ome-model:
    base-branch: master
    
  ome-poi:
    base-branch: master
    
  ome-stubs:
    base-branch: master
    
  ZarrReader:
    base-branch: main
++ pwd
+ scc merge --repository-config=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts/repositories.yml --no-ask --reset --comment -S success-only --update-gitmodules --push merge_ci master
Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503
2024-06-05 00:02:21,481 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503
2024-06-05 00:02:41,300 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-06-05 00:02:41,300 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-06-05 00:02:41,300 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-06-05 00:02:41,300 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-06-05 00:02:41,300 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-06-05 00:02:41,300 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-06-05 00:02:56,062 [     scc.git] INFO  Overriding base-branch from master to main
2024-06-05 00:03:25,175 [     scc.git] INFO  Overriding base-branch from master to develop
2024-06-05 00:04:07,646 [     scc.git] INFO    - PR 174 jburel 'Remove docs'
Conflicting PR. Removed from build [BIOFORMATS-push#91](https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/91/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/91/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - docs/sphinx/pom.xml
    - docs/sphinx/ome-tiff/index.rst

--conflicts

2024-06-05 00:04:13,492 [   scc.merge] INFO  Repository: ome/bio-formats-build
2024-06-05 00:04:13,492 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 604 dependabot[bot] 'Bump bio-formats-examples from `74d4def` to `9955ace`'
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 608 dependabot[bot] 'Bump bioformats from `682bc7e` to `bf2c462`'
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 609 dependabot[bot] 'Bump bio-formats-documentation from `afd4c11` to `7a2cfff`'
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 610 dependabot[bot] 'Bump ome-model from `db24e3a` to `be5b189`'
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Repository: ome/ZarrReader
2024-06-05 00:04:13,492 [   scc.merge] INFO  Excluded PRs:
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 73 dgault 'Update ReadMe and Change Log' (status: failure)
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
2024-06-05 00:04:13,492 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 75 dgault 'Update handling and parsing of acquisition metadata'
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 82 dgault 'Reintroduce S3FileSystemStore'
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Repository: ome/bio-formats-documentation
2024-06-05 00:04:13,492 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 376 dgault 'Remove link to barre.dev samples'
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Repository: ome/bio-formats-examples
2024-06-05 00:04:13,492 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,492 [   scc.merge] INFO  
2024-06-05 00:04:13,492 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
2024-06-05 00:04:13,492 [   scc.merge] INFO    - PR 127 jburel 'Matlab Examples'
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Repository: openmicroscopy/bioformats
2024-06-05 00:04:13,493 [   scc.merge] INFO  Excluded PRs:
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles' (label: exclude)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4180 melissalinkert 'Columbus: update to use micrometers instead of `reference frame` for positions' (label: exclude)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
2024-06-05 00:04:13,493 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4188 melissalinkert 'Fix a few string comparisons, fixes #4184'
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 4193 dgault 'Imaris: Remove empty color entries for non 0 indexed colors'
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Repository: ome/ome-codecs
2024-06-05 00:04:13,493 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Merged PRs:
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 39 dependabot[bot] 'Bump io.airlift:aircompressor from 0.21 to 0.27'
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Repository: ome/ome-common-java
2024-06-05 00:04:13,493 [   scc.merge] INFO  Excluded PRs:
2024-06-05 00:04:13,493 [   scc.merge] INFO    - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
2024-06-05 00:04:13,493 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,493 [   scc.merge] INFO  Repository: ome/ome-jai
2024-06-05 00:04:13,493 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,493 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Repository: ome/ome-mdbtools
2024-06-05 00:04:13,494 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Repository: ome/ome-metakit
2024-06-05 00:04:13,494 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Repository: ome/ome-model
2024-06-05 00:04:13,494 [   scc.merge] INFO  Excluded PRs:
2024-06-05 00:04:13,494 [   scc.merge] INFO    - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft)
2024-06-05 00:04:13,494 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Conflicting PRs (not included):
2024-06-05 00:04:13,494 [   scc.merge] INFO    - PR 174 jburel 'Remove docs'
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Repository: ome/ome-poi
2024-06-05 00:04:13,494 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  Repository: ome/ome-stubs
2024-06-05 00:04:13,494 [   scc.merge] INFO  Already up to date.
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:13,494 [   scc.merge] INFO  
2024-06-05 00:04:39,070 [   scc.merge] INFO  Merged branch pushed to https://github.com/snoopycrimecop/bio-formats-build/tree/merge_ci
+ echo 'Update maven component versions'
Update maven component versions
+ update-versions
OMEZarrReader=0.4.2-SNAPSHOT bio-formats-documentation=8.0.0-SNAPSHOT bio-formats-examples=8.0.0-SNAPSHOT bio-formats_plugins=8.0.0-SNAPSHOT bio-formats-tools=8.0.0-SNAPSHOT bioformats_package=8.0.0-SNAPSHOT turbojpeg=8.0.0-SNAPSHOT formats-api=8.0.0-SNAPSHOT formats-bsd=8.0.0-SNAPSHOT formats-gpl=8.0.0-SNAPSHOT test-suite=8.0.0-SNAPSHOT pom-bio-formats=8.0.0-SNAPSHOT bioformats=8.0.0-SNAPSHOT ome-codecs=1.0.4-SNAPSHOT ome-common=6.0.23-SNAPSHOT ome-jai=0.1.5-SNAPSHOT ome-mdbtools=5.3.4-SNAPSHOT metakit=5.3.8-SNAPSHOT ome-model-doc=6.3.7-SNAPSHOT ome-xml=6.3.7-SNAPSHOT specification=6.3.7-SNAPSHOT ome-model=6.3.7-SNAPSHOT ome-poi=5.3.10-SNAPSHOT mipav-stubs=6.0.3-SNAPSHOT ome-stubs=6.0.3-SNAPSHOT
+ echo 'Commit all component version changes'
Commit all component version changes
+ git submodule foreach 'git add -u'
Entering 'ZarrReader'
Entering 'bio-formats-documentation'
Entering 'bio-formats-examples'
Entering 'bioformats'
Entering 'ome-codecs'
Entering 'ome-common-java'
Entering 'ome-jai'
Entering 'ome-mdbtools'
Entering 'ome-metakit'
Entering 'ome-model'
Entering 'ome-poi'
Entering 'ome-stubs'
+ git submodule foreach 'git commit -m '\''Update component versions'\'' || true'
Entering 'ZarrReader'
HEAD detached from 31e9353
nothing to commit, working tree clean
Entering 'bio-formats-documentation'
[detached HEAD 117cb53e] Update component versions
 1 file changed, 7 insertions(+), 7 deletions(-)
Entering 'bio-formats-examples'
[detached HEAD f791931] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'bioformats'
[detached HEAD a7e662b5fe] Update component versions
 1 file changed, 9 insertions(+), 9 deletions(-)
Entering 'ome-codecs'
[detached HEAD f65d501] Update component versions
 1 file changed, 2 insertions(+), 2 deletions(-)
Entering 'ome-common-java'
HEAD detached from 4604fff
nothing to commit, working tree clean
Entering 'ome-jai'
HEAD detached from e70c2ab
nothing to commit, working tree clean
Entering 'ome-mdbtools'
HEAD detached from 9193930
nothing to commit, working tree clean
Entering 'ome-metakit'
[detached HEAD a595fab] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-model'
[detached HEAD 528ab80e] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-poi'
[detached HEAD 313ad88] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-stubs'
HEAD detached from 1559997
nothing to commit, working tree clean
+ echo 'Push all branches'
Push all branches
++ git config github.user
+ user=snoopycrimecop
+ git submodule foreach 'git push -f git@github.com:snoopycrimecop/${path}.git HEAD:merge_ci'
Entering 'ZarrReader'
Everything up-to-date
Entering 'bio-formats-documentation'
To github.com:snoopycrimecop/bio-formats-documentation.git
   4dd14b96..117cb53e  HEAD -> merge_ci
Entering 'bio-formats-examples'
To github.com:snoopycrimecop/bio-formats-examples.git
   5902d15..f791931  HEAD -> merge_ci
Entering 'bioformats'
To github.com:snoopycrimecop/bioformats.git
   4d87d3eddb..a7e662b5fe  HEAD -> merge_ci
Entering 'ome-codecs'
To github.com:snoopycrimecop/ome-codecs.git
   5bb05fd..f65d501  HEAD -> merge_ci
Entering 'ome-common-java'
Everything up-to-date
Entering 'ome-jai'
Everything up-to-date
Entering 'ome-mdbtools'
Everything up-to-date
Entering 'ome-metakit'
To github.com:snoopycrimecop/ome-metakit.git
   4c8558d..a595fab  HEAD -> merge_ci
Entering 'ome-model'
To github.com:snoopycrimecop/ome-model.git
   94680280..528ab80e  HEAD -> merge_ci
Entering 'ome-poi'
To github.com:snoopycrimecop/ome-poi.git
   0f894a7..313ad88  HEAD -> merge_ci
Entering 'ome-stubs'
Everything up-to-date
+ echo 'Commit all component version changes'
Commit all component version changes
+ git add -u
+ git commit -m 'Update component versions'
[detached HEAD d21b0a2] Update component versions
 7 files changed, 7 insertions(+), 7 deletions(-)
+ git push -f git@github.com:snoopycrimecop/bio-formats-build.git HEAD:merge_ci
To github.com:snoopycrimecop/bio-formats-build.git
   094d2b0..d21b0a2  HEAD -> merge_ci
[BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins11444395061624155384.sh
+ mkdir -p /home/omero/workspace/BIOFORMATS-push/target
+ cd /home/omero/workspace/BIOFORMATS-push/target
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/
+ cd /home/omero/workspace/BIOFORMATS-push/bio-formats-build
+ foreach-get-version
+ foreach-get-version-as-property
Archiving artifacts
Finished: SUCCESS