Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 111
originally caused by:
 Started by upstream project "Trigger" build number 124
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins312606704229792950.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17351_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:46:58,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:46:58,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:46:58,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:46:58,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:46:58,530 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:46:58,530 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:46:58,530 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:46:58,531 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:46:58,531 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration.
   [testng] 02:46:58,532 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point
   [testng] 02:46:58,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 683 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-04 02:46:58,541] [main] java.version = 21
   [testng] 02:46:58,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:46:58,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:46:58,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-04_02-46-58.log]
   [testng] 02:46:58,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-07-04 02:46:58,593] [main] testng.directory = /data
   [testng] [2024-07-04 02:46:58,593] [main] testng.configDirectory = /config
   [testng] [2024-07-04 02:46:58,602] [main] testng.multiplier = 1.0
   [testng] [2024-07-04 02:46:58,603] [main] testng.in-memory = false
   [testng] [2024-07-04 02:46:58,603] [main] testng.allow-missing = false
   [testng] [2024-07-04 02:46:58,603] [main] user.language = en
   [testng] [2024-07-04 02:46:58,603] [main] user.country = ${user.country}
   [testng] [2024-07-04 02:46:58,603] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-04 02:46:59,909] [main] ----------------------------------------
   [testng] [2024-07-04 02:46:59,909] [main] Total files: 22
   [testng] [2024-07-04 02:46:59,909] [main] Scan time: 1.306 s (59 ms/file)
   [testng] [2024-07-04 02:46:59,910] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-04 02:47:08,522] [pool-1-thread-1] Initializing /data/converted/clown.ipw: 
   [testng] 02:47:08,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:47:08,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-04_02-47-08.log]
   [testng] 02:47:08,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37694e36 - End of configuration.
   [testng] [2024-07-04 02:47:08,549] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: 
   [testng] 02:47:08,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:47:08,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-04_02-47-08.log]
   [testng] 02:47:08,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c13523 - End of configuration.
   [testng] [2024-07-04 02:47:08,566] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: 
   [testng] 02:47:08,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:47:08,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-04_02-47-08.log]
   [testng] 02:47:08,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b07284d - End of configuration.
   [testng] [2024-07-04 02:47:08,615] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw: 
   [testng] 02:47:08,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:47:08,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-04_02-47-08.log]
   [testng] 02:47:08,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b70a58b - End of configuration.
   [testng] [2024-07-04 02:47:08,641] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: 
   [testng] 02:47:08,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:47:08,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-04_02-47-08.log]
   [testng] 02:47:08,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd753b6 - End of configuration.
   [testng] [2024-07-04 02:47:08,704] [pool-1-thread-8] Initializing /data/converted/mitosis-test.tif: 
   [testng] 02:47:08,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:47:08,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-04_02-47-08.log]
   [testng] 02:47:08,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4745ac65 - End of configuration.
   [testng] [2024-07-04 02:47:08,840] [pool-1-thread-7] Initializing /data/converted/clown.seq: 
   [testng] 02:47:08,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:47:08,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-04_02-47-08.log]
   [testng] 02:47:08,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f24f1c7 - End of configuration.
   [testng] [2024-07-04 02:47:08,858] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: 
   [testng] 02:47:08,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:47:08,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-04_02-47-08.log]
   [testng] 02:47:08,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@825e653 - End of configuration.
   [testng] [2024-07-04 02:47:08,890] [pool-1-thread-5] Initializing /data/converted/dub01.seq: 
   [testng] 02:47:08,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:47:08,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-04_02-47-08.log]
   [testng] 02:47:08,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@288b20a - End of configuration.
   [testng] [2024-07-04 02:47:08,922] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq: 
   [testng] 02:47:08,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:47:08,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-04_02-47-08.log]
   [testng] 02:47:08,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1e2e18 - End of configuration.
   [testng] [2024-07-04 02:47:08,962] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: 
   [testng] 02:47:08,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:47:08,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-04_02-47-08.log]
   [testng] 02:47:08,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6555c15a - End of configuration.
   [testng] [2024-07-04 02:47:08,983] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: 
   [testng] 02:47:08,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:47:08,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:08,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-04_02-47-08.log]
   [testng] 02:47:08,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c51a4e - End of configuration.
   [testng] [2024-07-04 02:47:10,788] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff: 
   [testng] [2024-07-04 02:47:10,856] [pool-1-thread-7] Initializing /data/xiuwen/head2.seq: 
   [testng] [2024-07-04 02:47:10,950] [pool-1-thread-4] Initializing /data/converted/clown8c.seq: 
   [testng] [2024-07-04 02:47:10,966] [pool-1-thread-3] Initializing /data/converted/clown.tif: 
   [testng] [2024-07-04 02:47:10,984] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF: 
   [testng] [2024-07-04 02:47:11,016] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.seq: 
   [testng] [2024-07-04 02:47:11,042] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ: 
   [testng] [2024-07-04 02:47:11,072] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw: 
   [testng] [2024-07-04 02:47:11,103] [pool-1-thread-11] Initializing /data/converted/dub01.pic: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS