Console Output

Started by upstream project "Trigger" build number 121
originally caused by:
 Started by timer
Running as SYSTEM
Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /uod/idr-scratch/merge-ci
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /uod/idr-scratch/merge-ci/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git@github.com:openmicroscopy/data_repo_config.git # timeout=10
Fetching upstream changes from git@github.com:openmicroscopy/data_repo_config.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- git@github.com:openmicroscopy/data_repo_config.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision b471efda0cc72dadb3a1baf21fb23f861f74ad94 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f b471efda0cc72dadb3a1baf21fb23f861f74ad94 # timeout=10
Commit message: "Merge pull request #611 from melissalinkert/columbus-position-units"
 > git rev-list --no-walk 18c724ee061ee34de2f2398ee77079b7a825e860 # timeout=10
[merge-ci] $ /bin/bash -xe /tmp/jenkins3684538257779313194.sh
+ python3 -mvenv /tmp/venv
+ source /tmp/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/tmp/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/tmp/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ /tmp/venv/bin/pip install -U pip
Requirement already satisfied: pip in /tmp/venv/lib/python3.9/site-packages (24.1.1)
+ /tmp/venv/bin/pip install -U scc
Requirement already satisfied: scc in /tmp/venv/lib/python3.9/site-packages (0.19.1)
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x7fd3baf2c6a0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/scc/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x7fd3baf2c9d0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/scc/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x7fd3baf2cd30>: Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/scc/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x7fd3baf2cee0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/scc/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x7fd3baf2cf10>: Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/scc/
Requirement already satisfied: PyGithub>=1.54 in /tmp/venv/lib/python3.9/site-packages (from scc) (2.3.0)
Requirement already satisfied: PyYAML>=5.1 in /tmp/venv/lib/python3.9/site-packages (from scc) (6.0.1)
Requirement already satisfied: future in /tmp/venv/lib/python3.9/site-packages (from scc) (1.0.0)
Requirement already satisfied: ruamel.yaml in /tmp/venv/lib/python3.9/site-packages (from scc) (0.18.6)
Requirement already satisfied: ruamel.yaml.jinja2 in /tmp/venv/lib/python3.9/site-packages (from scc) (0.2.7)
Requirement already satisfied: six in /tmp/venv/lib/python3.9/site-packages (from scc) (1.16.0)
Requirement already satisfied: urllib3<2 in /tmp/venv/lib/python3.9/site-packages (from scc) (1.26.18)
Requirement already satisfied: yaclifw<0.3,>=0.2.0 in /tmp/venv/lib/python3.9/site-packages (from scc) (0.2.0)
Requirement already satisfied: pynacl>=1.4.0 in /tmp/venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
Requirement already satisfied: requests>=2.14.0 in /tmp/venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
Requirement already satisfied: pyjwt>=2.4.0 in /tmp/venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
Requirement already satisfied: typing-extensions>=4.0.0 in /tmp/venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.11.0)
Requirement already satisfied: Deprecated in /tmp/venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in /tmp/venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
Requirement already satisfied: cryptography>=3.4.0 in /tmp/venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
Requirement already satisfied: cffi>=1.4.1 in /tmp/venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /tmp/venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /tmp/venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.7)
Requirement already satisfied: certifi>=2017.4.17 in /tmp/venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
Requirement already satisfied: wrapt<2,>=1.10 in /tmp/venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
Requirement already satisfied: pycparser in /tmp/venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.22)
+ test -e src
+ /tmp/venv/bin/scc merge master --no-ask --reset --comment --push merge_ci
2024-07-02 00:00:40,376 [urllib3.conn] WARNI Retrying (GithubRetry(total=9, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0f5d00>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,376 [urllib3.conn] WARNI Retrying (GithubRetry(total=8, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0de730>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,377 [urllib3.conn] WARNI Retrying (GithubRetry(total=7, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0e4610>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,377 [urllib3.conn] WARNI Retrying (GithubRetry(total=6, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0fb790>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,378 [urllib3.conn] WARNI Retrying (GithubRetry(total=5, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0fb310>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,378 [urllib3.conn] WARNI Retrying (GithubRetry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0fb8e0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,379 [urllib3.conn] WARNI Retrying (GithubRetry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0fbbe0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,379 [urllib3.conn] WARNI Retrying (GithubRetry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af107220>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,379 [urllib3.conn] WARNI Retrying (GithubRetry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af1075e0>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
2024-07-02 00:00:40,380 [urllib3.conn] WARNI Retrying (GithubRetry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af107b80>: Failed to establish a new connection: [Errno -2] Name or service not known')': /user
Traceback (most recent call last):
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connection.py", line 174, in _new_conn
    conn = connection.create_connection(
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/util/connection.py", line 72, in create_connection
    for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
  File "/usr/lib64/python3.9/socket.py", line 954, in getaddrinfo
    for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno -2] Name or service not known

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 715, in urlopen
    httplib_response = self._make_request(
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 404, in _make_request
    self._validate_conn(conn)
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 1058, in _validate_conn
    conn.connect()
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connection.py", line 363, in connect
    self.sock = conn = self._new_conn()
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connection.py", line 186, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f29af0f5dc0>: Failed to establish a new connection: [Errno -2] Name or service not known

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/venv/lib64/python3.9/site-packages/requests/adapters.py", line 486, in send
    resp = conn.urlopen(
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 827, in urlopen
    return self.urlopen(
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 827, in urlopen
    return self.urlopen(
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 827, in urlopen
    return self.urlopen(
  [Previous line repeated 7 more times]
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/connectionpool.py", line 799, in urlopen
    retries = retries.increment(
  File "/tmp/venv/lib64/python3.9/site-packages/github/GithubRetry.py", line 203, in increment
    return super().increment(method, url, response, error, _pool, _stacktrace)
  File "/tmp/venv/lib64/python3.9/site-packages/urllib3/util/retry.py", line 592, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='api.github.com', port=443): Max retries exceeded with url: /user (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0f5dc0>: Failed to establish a new connection: [Errno -2] Name or service not known'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/venv/lib64/python3.9/site-packages/scc/main.py", line 64, in entry_point
    main("scc", items=[
  File "/tmp/venv/lib64/python3.9/site-packages/yaclifw/framework.py", line 188, in main
    ns.func(ns)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 3305, in __call__
    self.login(args)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 2086, in login
    self.gh = get_github(token, dont_ask=args.no_ask)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 227, in get_github
    return GHManager(login_or_token, password, **kwargs)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 249, in __init__
    self.authorize(password)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 274, in authorize
    self.get_login()  # Trigger
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 125, in wrapper
    error = check_exception_message(e)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 114, in wrapper
    return func(*args, **kwargs)
  File "/tmp/venv/lib64/python3.9/site-packages/scc/git.py", line 292, in get_login
    return self.get_user().login
  File "/tmp/venv/lib64/python3.9/site-packages/github/AuthenticatedUser.py", line 279, in login
    self._completeIfNotSet(self._login)
  File "/tmp/venv/lib64/python3.9/site-packages/github/GithubObject.py", line 416, in _completeIfNotSet
    self._completeIfNeeded()
  File "/tmp/venv/lib64/python3.9/site-packages/github/GithubObject.py", line 420, in _completeIfNeeded
    self.__complete()
  File "/tmp/venv/lib64/python3.9/site-packages/github/GithubObject.py", line 425, in __complete
    headers, data = self._requester.requestJsonAndCheck("GET", self._url.value)
  File "/tmp/venv/lib64/python3.9/site-packages/github/Requester.py", line 548, in requestJsonAndCheck
    return self.__check(*self.requestJson(verb, url, parameters, headers, input, self.__customConnection(url)))
  File "/tmp/venv/lib64/python3.9/site-packages/github/Requester.py", line 713, in requestJson
    return self.__requestEncode(cnx, verb, url, parameters, headers, input, encode)
  File "/tmp/venv/lib64/python3.9/site-packages/github/Requester.py", line 810, in __requestEncode
    status, responseHeaders, output = self.__requestRaw(cnx, verb, url, requestHeaders, encoded_input)
  File "/tmp/venv/lib64/python3.9/site-packages/github/Requester.py", line 844, in __requestRaw
    response = cnx.getresponse()
  File "/tmp/venv/lib64/python3.9/site-packages/github/Requester.py", line 196, in getresponse
    r = verb(
  File "/tmp/venv/lib64/python3.9/site-packages/requests/sessions.py", line 602, in get
    return self.request("GET", url, **kwargs)
  File "/tmp/venv/lib64/python3.9/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
  File "/tmp/venv/lib64/python3.9/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
  File "/tmp/venv/lib64/python3.9/site-packages/requests/adapters.py", line 519, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='api.github.com', port=443): Max retries exceeded with url: /user (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f29af0f5dc0>: Failed to establish a new connection: [Errno -2] Name or service not known'))
Build step 'Execute shell' marked build as failure
Finished: FAILURE