00:37:57Started by upstream project "Trigger" build number 300:37:57originally caused by:
00:37:57 Started by timer
00:37:57Running as SYSTEM
00:37:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:37:57The recommended git tool is: NONE
00:37:57No credentials specified
00:37:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:37:57Fetching changes from the remote Git repository
00:37:57 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:37:57Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:37:57 > git --version # timeout=10
00:37:57 > git --version # 'git version 2.39.3'
00:37:57 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:37:58 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:37:58Checking out Revision 12cd9157e9303dbfa43ea5c6a21f79b76d4c97ac (origin/merge_ci)
00:37:58 > git config core.sparsecheckout # timeout=10
00:37:58 > git checkout -f 12cd9157e9303dbfa43ea5c6a21f79b76d4c97ac # timeout=10
00:37:59Commit message: "Add version.properties to etc/omero.properties"
00:37:59 > git rev-list --no-walk 603c41035d086a270400cd1b77e1c0146a3677fd # timeout=10
00:37:59Cleaning workspace
00:37:59 > git rev-parse --verify HEAD # timeout=10
00:37:59Resetting working tree
00:37:59 > git reset --hard # timeout=10
00:38:00 > git clean -fdx # timeout=10
00:38:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 200:38:01[OMERO-build] $ /bin/bash -xe /tmp/jenkins12273020375647821284.sh
00:38:01+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
00:38:01+ cd src
00:38:01+ export OMERO_BRANCH=merge_ci
00:38:01+ OMERO_BRANCH=merge_ci
00:38:01+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:01+ source /home/omero/settings.env
00:38:01++ OMERO_DB_HOST=pg
00:38:01++ OMERO_DB_USER=postgres
00:38:01++ OMERO_DB_PASS=
00:38:01++ OMERO_ROOT_PASS=omero
00:38:01++ OMERO_DATA_DIR=/OMERO
00:38:01++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:01+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:03+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:38:03Collecting zeroc-ice==3.6.5
00:38:04 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:38:06WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:38:06You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:38:06+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:38:07Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
00:38:07Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.0)
00:38:07Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:38:08Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:38:08Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:38:08Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:38:08Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:38:08Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:38:08Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:38:08Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:38:08Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:38:08Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:38:08Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:38:08Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:38:08WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:38:08You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:38:08+ source docs/hudson/OMERO.sh
00:38:08++ set -e
00:38:08++ set -u
00:38:08++ set -x
00:38:08++ source docs/hudson/functions.sh
00:38:08++ echo Building merge_ci
00:38:08Building merge_ci
00:38:08++ python3 ./build.py build-dev release-all
00:38:08OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:38:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:38:0800:38:08check-ivy:
00:38:08Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:38:08Created dir: /home/omero/workspace/OMERO-build/src/target
00:38:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:0900:38:09build-scons:
00:38:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:09No sub-builds to iterate on
00:38:09Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:0900:38:09buildlist:
00:38:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:1000:38:10clean:
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:1000:38:10python-clean:
00:38:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-435-12cd9157e9-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:10 warnings.warn(
00:38:10running clean
00:38:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:1000:38:10python-clean:
00:38:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-435-12cd9157e9-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:10 warnings.warn(
00:38:10running clean
00:38:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:1000:38:10python-clean:
00:38:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-435-12cd9157e9-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:10 warnings.warn(
00:38:10running clean
00:38:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:38:11Deleting directory /home/omero/workspace/OMERO-build/src/target
00:38:1100:38:11build-scons:
00:38:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:1100:38:11build:
00:38:11No sub-builds to iterate on
00:38:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:1100:38:11tools-init:
00:38:11no-op
00:38:1100:38:11retrieve:
00:38:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:12WARNING: An illegal reflective access operation has occurred
00:38:12WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:38:12WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:38:12WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:38:12WARNING: All illegal access operations will be denied in a future release
00:38:4400:38:44prepare:
00:38:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:38:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:4400:38:44pre-compile:
00:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:4400:38:44compile:
00:38:44no-op
00:38:4400:38:44package:
00:38:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:38:4500:38:45install:
00:38:45:: delivering :: omero#omero_client;working@8b131652a813 :: 5.6.3-435-12cd9157e9-ice36 :: integration :: Fri Mar 15 00:38:11 UTC 2024
00:38:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:38:45:: publishing :: omero#omero_client
00:38:45 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-435-12cd9157e9-ice36/omero_client-5.6.3-435-12cd9157e9-ice36.jar
00:38:45 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-435-12cd9157e9-ice36/omero_client-5.6.3-435-12cd9157e9-ice36.xml
00:38:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:4500:38:45retrieve:
00:38:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:46Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:4600:38:46dist:
00:38:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:38:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:38:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:38:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:38:46Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:38:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:38:46Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:38:46Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:38:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:38:4600:38:46copy-licenses:
00:38:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:38:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:38:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:38:4600:38:46copy-history:
00:38:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:38:4600:38:46copy-etc:
00:38:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:38:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:38:4600:38:46copy-sql:
00:38:46Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:38:5000:38:50copy-server:
00:38:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:38:5000:38:50copy-client:
00:38:50Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:38:51 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:38:5200:38:52update-version:
00:38:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:38:5200:38:52create-workdirs:
00:38:52Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:38:52Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:38:5200:38:52copy-luts:
00:38:52Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:38:52Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:38:5200:38:52test-compile:
00:38:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:5200:38:52testng-init:
00:38:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0800:39:07,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:39:0800:39:07,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - No custom configurators were discovered as a service.
00:39:0800:39:07,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:0800:39:07,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:0800:39:07,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:39:0800:39:07,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:39:0800:39:07,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:39:0800:39:07,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:0800:39:07,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:0800:39:07,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:39:0800:39:07,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:0800:39:07,801 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@61f18402 - Resource [logback.xml] occurs multiple times on the classpath.
00:39:0800:39:07,801 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@61f18402 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:0800:39:07,801 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@61f18402 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:39:0800:39:08,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:39:0800:39:08,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:39:0800:39:08,070 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:39:0800:39:08,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@194971bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:39:0800:39:08,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@194971bd - Please move "immediateFlush" property into the enclosing appender.
00:39:0800:39:08,143 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@194971bd - Setting the "immediateFlush" property of the enclosing appender to true
00:39:0800:39:08,144 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:39:0800:39:08,145 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:39:0800:39:08,145 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:39:0800:39:08,145 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:39:0800:39:08,145 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:39:0800:39:08,145 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:39:0800:39:08,146 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2a4a3668 - End of configuration.
00:39:0800:39:08,148 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@39911d6a - Registering current configuration as safe fallback point
00:39:0800:39:08,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5fb99e3d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:39:0800:39:08lifecycle.test-compile:
00:39:08Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:08Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:08warning: [options] bootstrap class path not set in conjunction with -source 8
00:39:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:10import omero.grid.RawAccessRequest;
00:39:10 ^
00:39:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:10import omero.grid.RawAccessRequest;
00:39:10 ^
00:39:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:10import omero.grid.RawAccessRequest;
00:39:10 ^
00:39:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:10import omero.model.ImportJob;
00:39:10 ^
00:39:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:10import omero.model.ImportJobI;
00:39:10 ^
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:39:11 IObject link = (IObject) linkClass.newInstance();
00:39:11 ^
00:39:11 where T is a type-variable:
00:39:11 T extends Object declared in class Class
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:39:11 T copy = (T) obj.getClass().newInstance();
00:39:11 ^
00:39:11 where T is a type-variable:
00:39:11 T extends Object declared in class Class
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:11 RawAccessRequest raw = new RawAccessRequest();
00:39:11 ^
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:11 RawAccessRequest raw = new RawAccessRequest();
00:39:11 ^
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:11 raw.repoUuid = legacy.root().getHash().getValue();
00:39:11 ^
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:11 raw.command = "rm";
00:39:11 ^
00:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:11 raw.args = Arrays.asList(path);
00:39:11 ^
00:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:39:12 final IObject link = linkClass.newInstance();
00:39:12 ^
00:39:12 where T is a type-variable:
00:39:12 T extends Object declared in class Class
00:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:39:12 originalLink.setChild(annotationClass.newInstance());
00:39:12 ^
00:39:12 where T is a type-variable:
00:39:12 T extends Object declared in class Class
00:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:12 RoiResult r = svc.findByImage(id, new RoiOptions());
00:39:12 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:13 final RawAccessRequest request = new RawAccessRequest();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:13 final RawAccessRequest request = new RawAccessRequest();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:13 request.repoUuid = repo.root().getHash().getValue();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:13 request.command = "exists";
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:13 request.args = Collections.singletonList(dirPath);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:13 final RawAccessRequest request = new RawAccessRequest();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:13 final RawAccessRequest request = new RawAccessRequest();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:13 request.repoUuid = repo.root().getHash().getValue();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:13 request.command = "exists";
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:13 request.args = Collections.singletonList(dirName);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:13 final ImportJob importJob = new ImportJobI();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:13 final ImportJob importJob = new ImportJobI();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:39:13 importJob.setImageName(omero.rtypes.rstring(name));
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:39:13 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:13 final String savedName = sent.getImageName().getValue().toString();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:13 final String savedDesc = sent.getImageDescription().getValue().toString();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:13 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:13 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:39:13 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:39:13 table = svc.getTable(f.getId().getValue());
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:13 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:13 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:13 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:39:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:13 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:13 svc.getShapeStatsRestricted(
00:39:13 ^
00:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:13 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:39:13 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:14 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:14 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:14 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:14 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:14 p2.setRelatedTo(p1);
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:14 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:14 pixels1.setRelatedTo(pixels2);
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:14 Pixels pixels = pixels1.getRelatedTo();
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:14 Assert.assertNull(pixels1.getRelatedTo());
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:14 pixels1.setRelatedTo(pixels2);
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:14 Pixels pixels = pixels1.getRelatedTo();
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:14 Assert.assertNull(pixels1.getRelatedTo());
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:14 ^
00:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:14 ^
00:39:14Note: Some input files use unchecked or unsafe operations.
00:39:14Note: Recompile with -Xlint:unchecked for details.
00:39:1488 warnings
00:39:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1710722104.tmp
00:39:14Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:39:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:14:: delivering :: omero#OmeroJava-test;working@8b131652a813 :: 5.6.3-435-12cd9157e9-ice36 :: integration :: Fri Mar 15 00:38:52 UTC 2024
00:39:14 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:39:14:: publishing :: omero#OmeroJava-test
00:39:14 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-435-12cd9157e9-ice36.jar
00:39:14 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-435-12cd9157e9-ice36.xml
00:39:1400:39:14build-eclipse:
00:39:14No sub-builds to iterate on
00:39:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:1500:39:15retrieve:
00:39:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1700:39:17prepare:
00:39:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:1800:39:18release-clients:
00:39:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-435-12cd9157e9-ice36.zip
00:39:2400:39:24release-zip:
00:39:24Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
00:39:3600:39:36BUILD SUCCESSFUL
00:39:36Total time: 1 minute 28 seconds
00:39:36++ '[' -d .git ']'
00:39:36++ python3 ./build.py release-src
00:39:37OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:3700:39:37release-src-git:
00:39:37Releasing openmicroscopy-5.6.3-435-12cd9157e9-ice36
00:39:39 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-435-12cd9157e9-ice36.zip
00:39:39 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-435-12cd9157e9-ice36-base.zip
00:39:4000:39:40BUILD SUCCESSFUL
00:39:40Total time: 3 seconds
00:39:40++ echo BUILD_NUMBER=2
00:39:40++ echo OMERO_BRANCH=merge_ci
00:39:40++ git_info
00:39:40+++ git rev-parse HEAD
00:39:40++ HEAD=12cd9157e9303dbfa43ea5c6a21f79b76d4c97ac
00:39:40++ git log --max-count=1 12cd9157e9303dbfa43ea5c6a21f79b76d4c97ac
00:39:40++ env
00:39:40++ sort
00:39:40Archiving artifacts
00:40:09Finished: SUCCESS
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