01:26:52Started by upstream project "Trigger" build number 41401:26:52originally caused by:
01:26:52 Started by user devspace01:26:52 Restarted from build #413, stage Bio-Formats
01:26:52Running as SYSTEM
01:26:52Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:26:52The recommended git tool is: NONE
01:26:52No credentials specified
01:26:52 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:26:52Fetching changes from the remote Git repository
01:26:52 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:26:52Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:26:52 > git --version # timeout=10
01:26:52 > git --version # 'git version 2.43.5'
01:26:52 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:27:00 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:27:00Checking out Revision 9398da435960f0aaf3471464e628b35148eef33c (origin/merge_ci)
01:27:00 > git config core.sparsecheckout # timeout=10
01:27:00 > git checkout -f 9398da435960f0aaf3471464e628b35148eef33c # timeout=10
01:27:00Commit message: "Add version.properties to etc/omero.properties"
01:27:00 > git rev-list --no-walk bf8a6734d517c690e2122815e784dc5f9a9147fe # timeout=10
01:27:00Cleaning workspace
01:27:00 > git rev-parse --verify HEAD # timeout=10
01:27:00Resetting working tree
01:27:00 > git reset --hard # timeout=10
01:27:00 > git clean -fdx # timeout=10
01:27:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 34901:27:01[OMERO-build] $ /bin/bash -xe /tmp/jenkins4769892361404294336.sh
01:27:01+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:27:01+ cd src
01:27:01+ export OMERO_BRANCH=merge_ci
01:27:01+ OMERO_BRANCH=merge_ci
01:27:01+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:27:01+ source /home/omero/settings.env
01:27:01++ OMERO_DB_HOST=pg
01:27:01++ OMERO_DB_USER=postgres
01:27:01++ OMERO_DB_PASS=
01:27:01++ OMERO_ROOT_PASS=omero
01:27:01++ OMERO_DATA_DIR=/OMERO
01:27:01++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:27:01+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:27:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl01:27:08Collecting zeroc-ice==3.6.5
01:27:09 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:27:11WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
01:27:11You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:27:11+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
01:27:12Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.3)
01:27:12Collecting setuptools
01:27:12 Using cached setuptools-78.0.2-py3-none-any.whl (1.3 MB)
01:27:12Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
01:27:12Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
01:27:12Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
01:27:12Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
01:27:12Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
01:27:12Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
01:27:12Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
01:27:12Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:27:12Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:27:12Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
01:27:13Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
01:27:13Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
01:27:13Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
01:27:13Installing collected packages: setuptools
01:27:13 Attempting uninstall: setuptools
01:27:13 Found existing installation: setuptools 77.0.3
01:27:13 Uninstalling setuptools-77.0.3:
01:27:13 Successfully uninstalled setuptools-77.0.3
01:27:14Successfully installed setuptools-78.0.2
01:27:14WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
01:27:14You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:27:14+ source docs/hudson/OMERO.sh
01:27:14++ set -e
01:27:14++ set -u
01:27:14++ set -x
01:27:14++ source docs/hudson/functions.sh
01:27:14++ echo Building merge_ci
01:27:14Building merge_ci
01:27:14++ python3 ./build.py build-dev release-all
01:27:14OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:27:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:27:1601:27:16check-ivy:
01:27:16Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:27:16Created dir: /home/omero/workspace/OMERO-build/src/target
01:27:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:1801:27:18build-scons:
01:27:18Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:27:18No sub-builds to iterate on
01:27:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:27:1901:27:19buildlist:
01:27:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:1901:27:19clean:
01:27:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:1901:27:19python-clean:
01:27:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:20/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:20 warnings.warn(
01:27:20running clean
01:27:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:27:2001:27:20python-clean:
01:27:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:20/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:20 warnings.warn(
01:27:20running clean
01:27:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:2001:27:20python-clean:
01:27:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:20/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-9398da4359-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:20 warnings.warn(
01:27:20running clean
01:27:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:27:20Deleting directory /home/omero/workspace/OMERO-build/src/target
01:27:2101:27:21build-scons:
01:27:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:27:2101:27:21build:
01:27:21No sub-builds to iterate on
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:2101:27:21tools-init:
01:27:21no-op
01:27:2101:27:21retrieve:
01:27:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:22WARNING: An illegal reflective access operation has occurred
01:27:22WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:27:22WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:27:22WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:27:22WARNING: All illegal access operations will be denied in a future release
01:27:5101:27:51prepare:
01:27:51Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:5101:27:51pre-compile:
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:5101:27:51compile:
01:27:51no-op
01:27:5101:27:51package:
01:27:51Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:27:5201:27:52install:
01:27:52:: delivering :: omero#omero_client;working@fb338712db3d :: 5.6.3-548-9398da4359-ice36 :: integration :: Tue Mar 25 01:27:21 UTC 2025
01:27:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:27:52:: publishing :: omero#omero_client
01:27:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-9398da4359-ice36/omero_client-5.6.3-548-9398da4359-ice36.jar
01:27:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-9398da4359-ice36/omero_client-5.6.3-548-9398da4359-ice36.xml
01:27:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:5201:27:52retrieve:
01:27:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:27:5201:27:52dist:
01:27:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:27:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:27:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:27:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:27:52Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:27:52Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:27:52Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:27:53Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:27:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:27:5301:27:53copy-licenses:
01:27:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:27:53Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:27:53Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:27:5301:27:53copy-history:
01:27:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:27:5301:27:53copy-etc:
01:27:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:27:5401:27:54copy-sql:
01:27:54Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:28:0101:28:01copy-server:
01:28:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:28:0101:28:01copy-client:
01:28:01Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:28:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:28:0201:28:02update-version:
01:28:02Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:28:0201:28:02create-workdirs:
01:28:02Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:28:02Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:28:0201:28:02copy-luts:
01:28:02Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:28:02Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:28:0301:28:03test-compile:
01:28:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:0401:28:04testng-init:
01:28:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:0701:28:07,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
01:28:0701:28:07,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - No custom configurators were discovered as a service.
01:28:0701:28:07,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:28:0701:28:07,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:28:0701:28:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:28:0701:28:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:28:0701:28:07,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:28:0701:28:07,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:28:0701:28:07,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:28:0701:28:07,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:28:0701:28:07,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:28:0701:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs multiple times on the classpath.
01:28:0701:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:28:0701:28:07,253 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7c76d466 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:28:0701:28:07,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:28:0701:28:07,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:28:0701:28:07,479 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:28:0701:28:07,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:28:0701:28:07,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - Please move "immediateFlush" property into the enclosing appender.
01:28:0701:28:07,547 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5748ffe3 - Setting the "immediateFlush" property of the enclosing appender to true
01:28:0701:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:28:0701:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:28:0701:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:28:0701:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:28:0701:28:07,548 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:28:0701:28:07,548 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:28:0701:28:07,549 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3528740f - End of configuration.
01:28:0701:28:07,552 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2a292566 - Registering current configuration as safe fallback point
01:28:0701:28:07,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2896e105 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 301 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:28:0701:28:07lifecycle.test-compile:
01:28:07Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:07Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:08warning: [options] bootstrap class path not set in conjunction with -source 8
01:28:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:11import omero.grid.RawAccessRequest;
01:28:11 ^
01:28:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:11import omero.grid.RawAccessRequest;
01:28:11 ^
01:28:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:11import omero.grid.RawAccessRequest;
01:28:11 ^
01:28:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:11import omero.model.ImportJob;
01:28:11 ^
01:28:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:28:11import omero.model.ImportJobI;
01:28:11 ^
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:28:12 IObject link = (IObject) linkClass.newInstance();
01:28:12 ^
01:28:12 where T is a type-variable:
01:28:12 T extends Object declared in class Class
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:28:12 T copy = (T) obj.getClass().newInstance();
01:28:12 ^
01:28:12 where T is a type-variable:
01:28:12 T extends Object declared in class Class
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:12 RawAccessRequest raw = new RawAccessRequest();
01:28:12 ^
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:12 RawAccessRequest raw = new RawAccessRequest();
01:28:12 ^
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:12 raw.repoUuid = legacy.root().getHash().getValue();
01:28:12 ^
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:12 raw.command = "rm";
01:28:12 ^
01:28:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:12 raw.args = Arrays.asList(path);
01:28:12 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:28:13 final IObject link = linkClass.newInstance();
01:28:13 ^
01:28:13 where T is a type-variable:
01:28:13 T extends Object declared in class Class
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:28:13 originalLink.setChild(annotationClass.newInstance());
01:28:13 ^
01:28:13 where T is a type-variable:
01:28:13 T extends Object declared in class Class
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:13 RoiResult r = svc.findByImage(id, new RoiOptions());
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:13 final RawAccessRequest request = new RawAccessRequest();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:13 final RawAccessRequest request = new RawAccessRequest();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:13 request.repoUuid = repo.root().getHash().getValue();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:13 request.command = "exists";
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:13 request.args = Collections.singletonList(dirPath);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:13 final RawAccessRequest request = new RawAccessRequest();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:13 final RawAccessRequest request = new RawAccessRequest();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:13 request.repoUuid = repo.root().getHash().getValue();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:13 request.command = "exists";
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:13 request.args = Collections.singletonList(dirName);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:13 final ImportJob importJob = new ImportJobI();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:28:13 final ImportJob importJob = new ImportJobI();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:28:13 importJob.setImageName(omero.rtypes.rstring(name));
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:28:13 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:28:13 final String savedName = sent.getImageName().getValue().toString();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:28:13 final String savedDesc = sent.getImageDescription().getValue().toString();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:28:13 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:28:13 ^
01:28:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:28:13 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:28:13 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 RoiResult r = svc.findByImage(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:28:14 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:28:14 table = svc.getTable(f.getId().getValue());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 RoiResult r = svc.findByImage(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:28:14 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:28:14 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:28:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:28:14 svc.getShapeStatsRestricted(
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:28:14 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:14 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:14 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:14 request.typesToIgnore = Collections.singletonList("Annotation");
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:14 request.typesToIgnore = Collections.singletonList("Annotation");
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:14 p2.setRelatedTo(p1);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:14 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:14 pixels1.setRelatedTo(pixels2);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:14 Pixels pixels = pixels1.getRelatedTo();
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:14 Assert.assertNull(pixels1.getRelatedTo());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:14 pixels1.setRelatedTo(pixels2);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:14 Pixels pixels = pixels1.getRelatedTo();
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:14 Assert.assertNull(pixels1.getRelatedTo());
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:14 ^
01:28:14Note: Some input files use unchecked or unsafe operations.
01:28:14Note: Recompile with -Xlint:unchecked for details.
01:28:1488 warnings
01:28:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1680936095.tmp
01:28:15Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:28:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:15:: delivering :: omero#OmeroJava-test;working@fb338712db3d :: 5.6.3-548-9398da4359-ice36 :: integration :: Tue Mar 25 01:28:03 UTC 2025
01:28:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:28:15:: publishing :: omero#OmeroJava-test
01:28:15 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-9398da4359-ice36.jar
01:28:15 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-9398da4359-ice36.xml
01:28:1501:28:15build-eclipse:
01:28:15No sub-builds to iterate on
01:28:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:1501:28:15retrieve:
01:28:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:1901:28:19prepare:
01:28:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:28:2201:28:22release-clients:
01:28:22Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-9398da4359-ice36.zip
01:28:2801:28:28release-zip:
01:28:28Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-9398da4359-ice36.zip
01:28:4001:28:40BUILD SUCCESSFUL
01:28:40Total time: 1 minute 25 seconds
01:28:40++ '[' -d .git ']'
01:28:40++ python3 ./build.py release-src
01:28:40OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:28:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:28:4101:28:41release-src-git:
01:28:41Releasing openmicroscopy-5.6.3-548-9398da4359-ice36
01:28:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-9398da4359-ice36.zip
01:28:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-9398da4359-ice36-base.zip
01:28:4501:28:45BUILD SUCCESSFUL
01:28:45Total time: 4 seconds
01:28:45++ echo BUILD_NUMBER=353
01:28:45++ echo OMERO_BRANCH=merge_ci
01:28:45++ git_info
01:28:45+++ git rev-parse HEAD
01:28:45++ HEAD=9398da435960f0aaf3471464e628b35148eef33c
01:28:45++ git log --max-count=1 9398da435960f0aaf3471464e628b35148eef33c
01:28:45++ env
01:28:45++ sort
01:28:45Archiving artifacts
01:29:13Finished: SUCCESS
![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
