13:04:16Started by user devspace13:04:16Running as SYSTEM
13:04:16Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:04:16The recommended git tool is: NONE
13:04:16No credentials specified
13:04:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:04:17Fetching changes from the remote Git repository
13:04:17 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:04:17Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git13:04:17 > git --version # timeout=10
13:04:17 > git --version # 'git version 2.39.3'
13:04:17 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:04:20 > git rev-parse origin/merge_ci^{commit} # timeout=10
13:04:20Checking out Revision 85dade3b4a6eff1bd46d6232c55283b48374bced (origin/merge_ci)
13:04:20 > git config core.sparsecheckout # timeout=10
13:04:20 > git checkout -f 85dade3b4a6eff1bd46d6232c55283b48374bced # timeout=10
13:04:20Commit message: "Add version.properties to etc/omero.properties"
13:04:20 > git rev-list --no-walk f03a779e14f97d4a0f97b714c01f71369552fa2e # timeout=10
13:04:20Cleaning workspace
13:04:20 > git rev-parse --verify HEAD # timeout=10
13:04:20Resetting working tree
13:04:20 > git reset --hard # timeout=10
13:04:20 > git clean -fdx # timeout=10
13:04:20Copied 6 artifacts from "OMERO-python-superbuild-build" build number 5613:04:20[OMERO-build] $ /bin/bash -xe /tmp/jenkins13407929657452904900.sh
13:04:20+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
13:04:20+ cd src
13:04:20+ export OMERO_BRANCH=merge_ci
13:04:20+ OMERO_BRANCH=merge_ci
13:04:20+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:04:20+ source /home/omero/settings.env
13:04:20++ OMERO_DB_HOST=pg
13:04:20++ OMERO_DB_USER=postgres
13:04:20++ OMERO_DB_PASS=
13:04:20++ OMERO_ROOT_PASS=omero
13:04:20++ OMERO_DATA_DIR=/OMERO
13:04:20++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:04:20+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:04:23+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl13:04:26Collecting zeroc-ice==3.6.5
13:04:27 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
13:04:31WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
13:04:31You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
13:04:31+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
13:04:32Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
13:04:32Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
13:04:32Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
13:04:32Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
13:04:33Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
13:04:33Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
13:04:33Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
13:04:33Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
13:04:33Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
13:04:33Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
13:04:33Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
13:04:33Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
13:04:33Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
13:04:33Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
13:04:33WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
13:04:33You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
13:04:33+ source docs/hudson/OMERO.sh
13:04:33++ set -e
13:04:33++ set -u
13:04:33++ set -x
13:04:33++ source docs/hudson/functions.sh
13:04:33++ echo Building merge_ci
13:04:33Building merge_ci
13:04:33++ python3 ./build.py build-dev release-all
13:04:33OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
13:04:34Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:04:3413:04:34check-ivy:
13:04:34Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:04:34Created dir: /home/omero/workspace/OMERO-build/src/target
13:04:35:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:04:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:04:3513:04:35build-scons:
13:04:35Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:04:37No sub-builds to iterate on
13:04:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:04:3713:04:37buildlist:
13:04:37:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:04:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:04:3713:04:37clean:
13:04:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:04:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:04:3913:04:39python-clean:
13:04:39WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:04:39/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:04:39 warnings.warn(
13:04:39running clean
13:04:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:04:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:04:4013:04:40python-clean:
13:04:40WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:04:40/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:04:40 warnings.warn(
13:04:40running clean
13:04:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:04:4013:04:40python-clean:
13:04:40WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:04:40/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-85dade3b4a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:04:40 warnings.warn(
13:04:40running clean
13:04:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:04:40Deleting directory /home/omero/workspace/OMERO-build/src/target
13:04:4013:04:40build-scons:
13:04:40Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:04:4013:04:40build:
13:04:40No sub-builds to iterate on
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:04:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:04:4013:04:40tools-init:
13:04:40no-op
13:04:4013:04:40retrieve:
13:04:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:04:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:0313:05:03prepare:
13:05:03Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:05:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:0413:05:04pre-compile:
13:05:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:0413:05:04compile:
13:05:04no-op
13:05:0413:05:04package:
13:05:04Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:05:0413:05:04install:
13:05:04:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-85dade3b4a-ice36 :: integration :: Thu May 09 13:04:40 UTC 2024
13:05:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:05:04:: publishing :: omero#omero_client
13:05:04 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-85dade3b4a-ice36/omero_client-5.6.3-467-85dade3b4a-ice36.jar
13:05:04 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-85dade3b4a-ice36/omero_client-5.6.3-467-85dade3b4a-ice36.xml
13:05:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:0513:05:05retrieve:
13:05:05:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:05Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:05:0513:05:05dist:
13:05:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:05:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:05:05Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:05:05Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:05:05Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:05:05Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
13:05:05Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:05:05Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:05:05Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:05:0513:05:05copy-licenses:
13:05:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:05:06Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:05:06Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:05:0613:05:06copy-history:
13:05:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:05:0613:05:06copy-etc:
13:05:06Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:05:07Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:05:0713:05:07copy-sql:
13:05:07Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:05:2213:05:22copy-server:
13:05:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
13:05:2213:05:22copy-client:
13:05:22Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:05:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
13:05:2313:05:23update-version:
13:05:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:05:2313:05:23create-workdirs:
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:05:2313:05:23copy-luts:
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:05:23Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:05:2413:05:24test-compile:
13:05:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:05:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:2413:05:24testng-init:
13:05:24:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:2713:05:27,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
13:05:2713:05:27,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - No custom configurators were discovered as a service.
13:05:2713:05:27,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:05:2713:05:27,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:05:2713:05:27,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:05:2713:05:27,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:05:2713:05:27,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:05:2713:05:27,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:05:2713:05:27,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:05:2713:05:27,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:05:2713:05:27,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:05:2713:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs multiple times on the classpath.
13:05:2713:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:05:2713:05:27,398 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@476bf67d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:05:2713:05:27,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:05:2713:05:27,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:05:2713:05:27,625 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:05:2713:05:27,627 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:05:2713:05:27,627 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - Please move "immediateFlush" property into the enclosing appender.
13:05:2713:05:27,688 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@15db58c9 - Setting the "immediateFlush" property of the enclosing appender to true
13:05:2713:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:05:2713:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:05:2713:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:05:2713:05:27,688 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:05:2713:05:27,689 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:05:2713:05:27,689 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:05:2713:05:27,690 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@449c3c94 - End of configuration.
13:05:2713:05:27,692 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6e39ac84 - Registering current configuration as safe fallback point
13:05:2713:05:27,692 |-INFO in ch.qos.logback.classic.util.ContextInitializer@13b73714 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 295 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:05:2713:05:27lifecycle.test-compile:
13:05:27Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:27Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:28warning: [options] bootstrap class path not set in conjunction with -source 8
13:05:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:31import omero.grid.RawAccessRequest;
13:05:31 ^
13:05:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:31import omero.grid.RawAccessRequest;
13:05:31 ^
13:05:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:31import omero.grid.RawAccessRequest;
13:05:31 ^
13:05:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:31import omero.model.ImportJob;
13:05:31 ^
13:05:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:05:31import omero.model.ImportJobI;
13:05:31 ^
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:05:32 IObject link = (IObject) linkClass.newInstance();
13:05:32 ^
13:05:32 where T is a type-variable:
13:05:32 T extends Object declared in class Class
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:05:32 T copy = (T) obj.getClass().newInstance();
13:05:32 ^
13:05:32 where T is a type-variable:
13:05:32 T extends Object declared in class Class
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:32 RawAccessRequest raw = new RawAccessRequest();
13:05:32 ^
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:32 RawAccessRequest raw = new RawAccessRequest();
13:05:32 ^
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:32 raw.repoUuid = legacy.root().getHash().getValue();
13:05:32 ^
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:32 raw.command = "rm";
13:05:32 ^
13:05:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:32 raw.args = Arrays.asList(path);
13:05:32 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:05:33 final IObject link = linkClass.newInstance();
13:05:33 ^
13:05:33 where T is a type-variable:
13:05:33 T extends Object declared in class Class
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:05:33 originalLink.setChild(annotationClass.newInstance());
13:05:33 ^
13:05:33 where T is a type-variable:
13:05:33 T extends Object declared in class Class
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:33 RoiResult r = svc.findByImage(id, new RoiOptions());
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:33 final RawAccessRequest request = new RawAccessRequest();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:33 final RawAccessRequest request = new RawAccessRequest();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:33 request.repoUuid = repo.root().getHash().getValue();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:33 request.command = "exists";
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:33 request.args = Collections.singletonList(dirPath);
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:33 final RawAccessRequest request = new RawAccessRequest();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:33 final RawAccessRequest request = new RawAccessRequest();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:33 request.repoUuid = repo.root().getHash().getValue();
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:33 request.command = "exists";
13:05:33 ^
13:05:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:33 request.args = Collections.singletonList(dirName);
13:05:33 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:34 final ImportJob importJob = new ImportJobI();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:05:34 final ImportJob importJob = new ImportJobI();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:05:34 importJob.setImageName(omero.rtypes.rstring(name));
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:05:34 importJob.setImageDescription(omero.rtypes.rstring(desc));
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:05:34 final String savedName = sent.getImageName().getValue().toString();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:05:34 final String savedDesc = sent.getImageDescription().getValue().toString();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:05:34 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:05:34 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 RoiResult r = svc.findByImage(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:05:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:05:34 table = svc.getTable(f.getId().getValue());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 RoiResult r = svc.findByImage(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:05:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:05:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:05:34 svc.getShapeStatsRestricted(
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:05:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:34 request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:34 request.typesToIgnore = Collections.singletonList("Annotation");
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:34 request.typesToIgnore = Collections.singletonList("Annotation");
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:34 p2.setRelatedTo(p1);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:34 pixels1.setRelatedTo(pixels2);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:34 Pixels pixels = pixels1.getRelatedTo();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:34 Assert.assertNull(pixels1.getRelatedTo());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:34 pixels1.setRelatedTo(pixels2);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:34 Pixels pixels = pixels1.getRelatedTo();
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:34 Assert.assertNull(pixels1.getRelatedTo());
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:34 ^
13:05:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:34 ^
13:05:35Note: Some input files use unchecked or unsafe operations.
13:05:35Note: Recompile with -Xlint:unchecked for details.
13:05:3588 warnings
13:05:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_490908658.tmp
13:05:35Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:05:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:35:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-85dade3b4a-ice36 :: integration :: Thu May 09 13:05:24 UTC 2024
13:05:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:05:35:: publishing :: omero#OmeroJava-test
13:05:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-85dade3b4a-ice36.jar
13:05:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-85dade3b4a-ice36.xml
13:05:3513:05:35build-eclipse:
13:05:35No sub-builds to iterate on
13:05:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:3513:05:35retrieve:
13:05:35:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:3713:05:37prepare:
13:05:37Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:05:3913:05:39release-clients:
13:05:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-85dade3b4a-ice36.zip
13:05:4513:05:45release-zip:
13:05:45Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-85dade3b4a-ice36.zip
13:05:5713:05:57BUILD SUCCESSFUL
13:05:57Total time: 1 minute 23 seconds
13:05:57++ '[' -d .git ']'
13:05:57++ python3 ./build.py release-src
13:05:57OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
13:05:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:05:5713:05:57release-src-git:
13:05:57Releasing openmicroscopy-5.6.3-467-85dade3b4a-ice36
13:05:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-85dade3b4a-ice36.zip
13:05:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-85dade3b4a-ice36-base.zip
13:06:0113:06:01BUILD SUCCESSFUL
13:06:01Total time: 3 seconds
13:06:01++ echo BUILD_NUMBER=57
13:06:01++ echo OMERO_BRANCH=merge_ci
13:06:01++ git_info
13:06:01+++ git rev-parse HEAD
13:06:01++ HEAD=85dade3b4a6eff1bd46d6232c55283b48374bced
13:06:01++ git log --max-count=1 85dade3b4a6eff1bd46d6232c55283b48374bced
13:06:01++ env
13:06:01++ sort
13:06:01Archiving artifacts
13:06:29Finished: SUCCESS
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