03:08:14Started by upstream project "Trigger" build number 7903:08:14originally caused by:
03:08:14 Started by timer
03:08:14Running as SYSTEM
03:08:14Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
03:08:14The recommended git tool is: NONE
03:08:14No credentials specified
03:08:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
03:08:14Fetching changes from the remote Git repository
03:08:14 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
03:08:14Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git03:08:14 > git --version # timeout=10
03:08:14 > git --version # 'git version 2.39.3'
03:08:14 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
03:08:18 > git rev-parse origin/merge_ci^{commit} # timeout=10
03:08:18Checking out Revision 6d87d9debbb9887ee46a7978a767ec6c72838b13 (origin/merge_ci)
03:08:18 > git config core.sparsecheckout # timeout=10
03:08:18 > git checkout -f 6d87d9debbb9887ee46a7978a767ec6c72838b13 # timeout=10
03:08:18Commit message: "Add version.properties to etc/omero.properties"
03:08:18 > git rev-list --no-walk 408be6aa26e7c698c37d358360abdd1e37f2e601 # timeout=10
03:08:18Cleaning workspace
03:08:18 > git rev-parse --verify HEAD # timeout=10
03:08:18Resetting working tree
03:08:18 > git reset --hard # timeout=10
03:08:19 > git clean -fdx # timeout=10
03:08:19Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6903:08:19[OMERO-build] $ /bin/bash -xe /tmp/jenkins8644855834517682662.sh
03:08:19+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
03:08:19+ cd src
03:08:19+ export OMERO_BRANCH=merge_ci
03:08:19+ OMERO_BRANCH=merge_ci
03:08:19+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
03:08:19+ source /home/omero/settings.env
03:08:19++ OMERO_DB_HOST=pg
03:08:19++ OMERO_DB_USER=postgres
03:08:19++ OMERO_DB_PASS=
03:08:19++ OMERO_ROOT_PASS=omero
03:08:19++ OMERO_DATA_DIR=/OMERO
03:08:19++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
03:08:19+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
03:08:22+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl03:08:24Collecting zeroc-ice==3.6.5
03:08:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
03:08:27WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
03:08:27You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
03:08:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
03:08:27Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
03:08:28Collecting setuptools
03:08:28 Using cached setuptools-70.0.0-py3-none-any.whl (863 kB)
03:08:28Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
03:08:28Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
03:08:28Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
03:08:28Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
03:08:28Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
03:08:28Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
03:08:28Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
03:08:28Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
03:08:28Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
03:08:28Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
03:08:28Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
03:08:28Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
03:08:28Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
03:08:28Installing collected packages: setuptools
03:08:28 Attempting uninstall: setuptools
03:08:28 Found existing installation: setuptools 69.5.1
03:08:28 Uninstalling setuptools-69.5.1:
03:08:28 Successfully uninstalled setuptools-69.5.1
03:08:29Successfully installed setuptools-70.0.0
03:08:29WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
03:08:29You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
03:08:29+ source docs/hudson/OMERO.sh
03:08:29++ set -e
03:08:29++ set -u
03:08:29++ set -x
03:08:29++ source docs/hudson/functions.sh
03:08:29++ echo Building merge_ci
03:08:29Building merge_ci
03:08:29++ python3 ./build.py build-dev release-all
03:08:29OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
03:08:29Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
03:08:2903:08:29check-ivy:
03:08:29Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
03:08:29Created dir: /home/omero/workspace/OMERO-build/src/target
03:08:30:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:08:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:08:3103:08:31build-scons:
03:08:31Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
03:08:31No sub-builds to iterate on
03:08:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
03:08:3103:08:31buildlist:
03:08:31:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:08:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:08:3103:08:31clean:
03:08:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:08:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:08:3103:08:31python-clean:
03:08:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
03:08:31/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
03:08:31 warnings.warn(
03:08:31running clean
03:08:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
03:08:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
03:08:3203:08:32python-clean:
03:08:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
03:08:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
03:08:32 warnings.warn(
03:08:32running clean
03:08:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:08:3203:08:32python-clean:
03:08:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
03:08:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
03:08:32 warnings.warn(
03:08:32running clean
03:08:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
03:08:32Deleting directory /home/omero/workspace/OMERO-build/src/target
03:08:3203:08:32build-scons:
03:08:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
03:08:3203:08:32build:
03:08:32No sub-builds to iterate on
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
03:08:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
03:08:3203:08:32tools-init:
03:08:32no-op
03:08:3303:08:33retrieve:
03:08:33:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:08:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:09:2803:09:28prepare:
03:09:28Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
03:09:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
03:09:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
03:09:2803:09:28pre-compile:
03:09:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
03:09:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
03:09:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
03:09:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
03:09:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
03:09:2803:09:28compile:
03:09:28no-op
03:09:2803:09:28package:
03:09:28Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
03:09:2903:09:29install:
03:09:29:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-6d87d9debb-ice36 :: integration :: Wed May 22 03:08:32 UTC 2024
03:09:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
03:09:29:: publishing :: omero#omero_client
03:09:29 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-6d87d9debb-ice36/omero_client-5.6.3-467-6d87d9debb-ice36.jar
03:09:29 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-6d87d9debb-ice36/omero_client-5.6.3-467-6d87d9debb-ice36.xml
03:09:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:09:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:09:2903:09:29retrieve:
03:09:29:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:09:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:09:30Entering /home/omero/workspace/OMERO-build/src/components/tools...
03:09:3003:09:30dist:
03:09:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
03:09:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
03:09:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
03:09:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
03:09:30Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
03:09:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
03:09:30Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
03:09:30Entering /home/omero/workspace/OMERO-build/src/components/tests...
03:09:30Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
03:09:3003:09:30copy-licenses:
03:09:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
03:09:30Created dir: /home/omero/workspace/OMERO-build/src/dist/share
03:09:30Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
03:09:3003:09:30copy-history:
03:09:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
03:09:3003:09:30copy-etc:
03:09:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
03:09:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
03:09:3003:09:30copy-sql:
03:09:30Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
03:09:4603:09:46copy-server:
03:09:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
03:09:4603:09:46copy-client:
03:09:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
03:09:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
03:09:4803:09:48update-version:
03:09:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
03:09:4803:09:48create-workdirs:
03:09:48Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
03:09:48Created dir: /home/omero/workspace/OMERO-build/src/dist/var
03:09:4803:09:48copy-luts:
03:09:48Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
03:09:48Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
03:09:4803:09:48test-compile:
03:09:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
03:09:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
03:09:4803:09:48testng-init:
03:09:48:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:09:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:09:5303:09:53,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
03:09:5303:09:53,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - No custom configurators were discovered as a service.
03:09:5303:09:53,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
03:09:5303:09:53,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
03:09:5303:09:53,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
03:09:5303:09:53,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
03:09:5303:09:53,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
03:09:5303:09:53,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
03:09:5303:09:53,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
03:09:5303:09:53,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
03:09:5303:09:53,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
03:09:5303:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs multiple times on the classpath.
03:09:5303:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
03:09:5303:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
03:09:5303:09:53,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
03:09:5303:09:53,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
03:09:5303:09:53,663 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
03:09:5303:09:53,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
03:09:5303:09:53,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Please move "immediateFlush" property into the enclosing appender.
03:09:5303:09:53,770 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Setting the "immediateFlush" property of the enclosing appender to true
03:09:5303:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
03:09:5303:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
03:09:5303:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
03:09:5303:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
03:09:5303:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
03:09:5303:09:53,771 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
03:09:5303:09:53,773 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@39b266b2 - End of configuration.
03:09:5303:09:53,778 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5ea7ad41 - Registering current configuration as safe fallback point
03:09:5303:09:53,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 482 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
03:09:5303:09:53lifecycle.test-compile:
03:09:53Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
03:09:53Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
03:09:54warning: [options] bootstrap class path not set in conjunction with -source 8
03:09:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:09:56import omero.grid.RawAccessRequest;
03:09:56 ^
03:09:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:09:56import omero.grid.RawAccessRequest;
03:09:56 ^
03:09:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:09:56import omero.grid.RawAccessRequest;
03:09:56 ^
03:09:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
03:09:56import omero.model.ImportJob;
03:09:56 ^
03:09:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
03:09:56import omero.model.ImportJobI;
03:09:56 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
03:09:58 IObject link = (IObject) linkClass.newInstance();
03:09:58 ^
03:09:58 where T is a type-variable:
03:09:58 T extends Object declared in class Class
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
03:09:58 T copy = (T) obj.getClass().newInstance();
03:09:58 ^
03:09:58 where T is a type-variable:
03:09:58 T extends Object declared in class Class
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:09:58 RawAccessRequest raw = new RawAccessRequest();
03:09:58 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:09:58 RawAccessRequest raw = new RawAccessRequest();
03:09:58 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:09:58 raw.repoUuid = legacy.root().getHash().getValue();
03:09:58 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
03:09:58 raw.command = "rm";
03:09:58 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
03:09:58 raw.args = Arrays.asList(path);
03:09:58 ^
03:09:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
03:09:58 final IObject link = linkClass.newInstance();
03:09:58 ^
03:09:58 where T is a type-variable:
03:09:58 T extends Object declared in class Class
03:09:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
03:09:59 originalLink.setChild(annotationClass.newInstance());
03:09:59 ^
03:09:59 where T is a type-variable:
03:09:59 T extends Object declared in class Class
03:09:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:09:59 RoiResult r = svc.findByImage(id, new RoiOptions());
03:09:59 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:10:00 final RawAccessRequest request = new RawAccessRequest();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:10:00 final RawAccessRequest request = new RawAccessRequest();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:10:00 request.repoUuid = repo.root().getHash().getValue();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
03:10:00 request.command = "exists";
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
03:10:00 request.args = Collections.singletonList(dirPath);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:10:00 final RawAccessRequest request = new RawAccessRequest();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:10:00 final RawAccessRequest request = new RawAccessRequest();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:10:00 request.repoUuid = repo.root().getHash().getValue();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
03:10:00 request.command = "exists";
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
03:10:00 request.args = Collections.singletonList(dirName);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
03:10:00 final ImportJob importJob = new ImportJobI();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
03:10:00 final ImportJob importJob = new ImportJobI();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
03:10:00 importJob.setImageName(omero.rtypes.rstring(name));
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
03:10:00 importJob.setImageDescription(omero.rtypes.rstring(desc));
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
03:10:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
03:10:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
03:10:00 final String savedName = sent.getImageName().getValue().toString();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
03:10:00 final String savedDesc = sent.getImageDescription().getValue().toString();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
03:10:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
03:10:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
03:10:00 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
03:10:00 ^
03:10:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
03:10:00 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
03:10:00 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 RoiResult r = svc.findByImage(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
03:10:01 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
03:10:01 table = svc.getTable(f.getId().getValue());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 RoiResult r = svc.findByImage(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
03:10:01 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
03:10:01 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
03:10:01 svc.getShapeStatsRestricted(
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
03:10:01 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:10:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:10:01 request.typesToIgnore = Collections.singletonList("TagAnnotation");
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:10:01 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:10:01 request.typesToIgnore = Collections.singletonList("Annotation");
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:10:01 request.typesToIgnore = Collections.singletonList("Annotation");
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:10:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:10:01 p2.setRelatedTo(p1);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:10:01 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:10:01 pixels1.setRelatedTo(pixels2);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:10:01 Pixels pixels = pixels1.getRelatedTo();
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:10:01 Assert.assertNull(pixels1.getRelatedTo());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:10:01 pixels1.setRelatedTo(pixels2);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:10:01 Pixels pixels = pixels1.getRelatedTo();
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:10:01 Assert.assertNull(pixels1.getRelatedTo());
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:10:01 ^
03:10:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:10:01 ^
03:10:01Note: Some input files use unchecked or unsafe operations.
03:10:01Note: Recompile with -Xlint:unchecked for details.
03:10:0188 warnings
03:10:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1162144154.tmp
03:10:02Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
03:10:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:10:02:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-6d87d9debb-ice36 :: integration :: Wed May 22 03:09:48 UTC 2024
03:10:02 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
03:10:02:: publishing :: omero#OmeroJava-test
03:10:02 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-6d87d9debb-ice36.jar
03:10:02 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-6d87d9debb-ice36.xml
03:10:0203:10:02build-eclipse:
03:10:02No sub-builds to iterate on
03:10:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
03:10:0203:10:02retrieve:
03:10:02:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
03:10:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
03:10:0603:10:06prepare:
03:10:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
03:10:0803:10:08release-clients:
03:10:08Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-6d87d9debb-ice36.zip
03:10:1503:10:15release-zip:
03:10:15Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-6d87d9debb-ice36.zip
03:10:2903:10:29BUILD SUCCESSFUL
03:10:29Total time: 2 minutes 0 seconds
03:10:29++ '[' -d .git ']'
03:10:29++ python3 ./build.py release-src
03:10:29OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
03:10:29Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
03:10:3003:10:30release-src-git:
03:10:30Releasing openmicroscopy-5.6.3-467-6d87d9debb-ice36
03:10:32 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-6d87d9debb-ice36.zip
03:10:32 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-6d87d9debb-ice36-base.zip
03:10:3303:10:33BUILD SUCCESSFUL
03:10:33Total time: 3 seconds
03:10:33++ echo BUILD_NUMBER=70
03:10:33++ echo OMERO_BRANCH=merge_ci
03:10:33++ git_info
03:10:33+++ git rev-parse HEAD
03:10:33++ HEAD=6d87d9debbb9887ee46a7978a767ec6c72838b13
03:10:33++ git log --max-count=1 6d87d9debbb9887ee46a7978a767ec6c72838b13
03:10:33++ env
03:10:33++ sort
03:10:33Archiving artifacts
03:11:03Finished: SUCCESS
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