00:39:14Started by upstream project "Trigger" build number 8100:39:14originally caused by:
00:39:14 Started by timer
00:39:14Running as SYSTEM
00:39:14Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:39:14The recommended git tool is: NONE
00:39:14No credentials specified
00:39:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:39:14Fetching changes from the remote Git repository
00:39:14 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:39:14Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:39:14 > git --version # timeout=10
00:39:14 > git --version # 'git version 2.39.3'
00:39:14 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:17 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:39:17Checking out Revision 830c12e3ced75b70971eddbde4c583ca85a17c87 (origin/merge_ci)
00:39:17 > git config core.sparsecheckout # timeout=10
00:39:17 > git checkout -f 830c12e3ced75b70971eddbde4c583ca85a17c87 # timeout=10
00:39:17Commit message: "Add version.properties to etc/omero.properties"
00:39:17 > git rev-list --no-walk 58e8db96d7ad7901d0780063e81d82270b9c1bfc # timeout=10
00:39:17Cleaning workspace
00:39:17 > git rev-parse --verify HEAD # timeout=10
00:39:17Resetting working tree
00:39:17 > git reset --hard # timeout=10
00:39:17 > git clean -fdx # timeout=10
00:39:17Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7100:39:17[OMERO-build] $ /bin/bash -xe /tmp/jenkins9090192367958909344.sh
00:39:17+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:39:17+ cd src
00:39:17+ export OMERO_BRANCH=merge_ci
00:39:17+ OMERO_BRANCH=merge_ci
00:39:17+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:17+ source /home/omero/settings.env
00:39:17++ OMERO_DB_HOST=pg
00:39:17++ OMERO_DB_USER=postgres
00:39:17++ OMERO_DB_PASS=
00:39:17++ OMERO_ROOT_PASS=omero
00:39:17++ OMERO_DATA_DIR=/OMERO
00:39:17++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:39:17+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:20+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:39:22Collecting zeroc-ice==3.6.5
00:39:22 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:24WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:24You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:24+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:25Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0)
00:39:25Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:39:25Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:25Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:25Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:25Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:25Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:25Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:25Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:25Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:25Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:25Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:25Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:25Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:26WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:26You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:26+ source docs/hudson/OMERO.sh
00:39:26++ set -e
00:39:26++ set -u
00:39:26++ set -x
00:39:26++ source docs/hudson/functions.sh
00:39:26++ echo Building merge_ci
00:39:26Building merge_ci
00:39:26++ python3 ./build.py build-dev release-all
00:39:26OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:26Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:2700:39:27check-ivy:
00:39:27Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:27Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:27:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:2800:39:28build-scons:
00:39:28Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:28No sub-builds to iterate on
00:39:28Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:2800:39:28buildlist:
00:39:28:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:2900:39:29clean:
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:2900:39:29python-clean:
00:39:29WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:29/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-830c12e3ce-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:29 warnings.warn(
00:39:29running clean
00:39:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:2900:39:29python-clean:
00:39:29WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:29/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-830c12e3ce-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:29 warnings.warn(
00:39:29running clean
00:39:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:3000:39:30python-clean:
00:39:30WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:30/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-830c12e3ce-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:30 warnings.warn(
00:39:30running clean
00:39:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:30Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:3000:39:30build-scons:
00:39:30Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:3000:39:30build:
00:39:30No sub-builds to iterate on
00:39:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:3000:39:30tools-init:
00:39:30no-op
00:39:3000:39:30retrieve:
00:39:30:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2400:40:24prepare:
00:40:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:2400:40:24pre-compile:
00:40:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:2400:40:24compile:
00:40:24no-op
00:40:2400:40:24package:
00:40:24Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:2500:40:25install:
00:40:25:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-830c12e3ce-ice36 :: integration :: Fri May 24 00:39:30 UTC 2024
00:40:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:25:: publishing :: omero#omero_client
00:40:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-830c12e3ce-ice36/omero_client-5.6.3-467-830c12e3ce-ice36.jar
00:40:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-830c12e3ce-ice36/omero_client-5.6.3-467-830c12e3ce-ice36.xml
00:40:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:2500:40:25retrieve:
00:40:25:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:2600:40:26dist:
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:26Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:26Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:2600:40:26copy-licenses:
00:40:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:2700:40:27copy-history:
00:40:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:2700:40:27copy-etc:
00:40:27Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:2700:40:27copy-sql:
00:40:27Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:4400:40:44copy-server:
00:40:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:4400:40:44copy-client:
00:40:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:40:4600:40:46update-version:
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:4600:40:46create-workdirs:
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:4600:40:46copy-luts:
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:46Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:4600:40:46test-compile:
00:40:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:47Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:4700:40:47testng-init:
00:40:47:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5000:40:50,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:5000:40:50,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - No custom configurators were discovered as a service.
00:40:5000:40:50,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:5000:40:50,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:5000:40:50,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:5000:40:50,614 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:5000:40:50,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:5000:40:50,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:5000:40:50,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:5000:40:50,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:5000:40:50,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:5000:40:50,618 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:5000:40:50,618 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:5000:40:50,618 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:5000:40:50,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:5000:40:50,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:5000:40:50,854 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:5000:40:50,856 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:5000:40:50,856 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Please move "immediateFlush" property into the enclosing appender.
00:40:5000:40:50,935 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:5000:40:50,937 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:5000:40:50,937 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:5000:40:50,937 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:5000:40:50,937 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:5000:40:50,937 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:5000:40:50,937 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:5000:40:50,939 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@39b266b2 - End of configuration.
00:40:5000:40:50,941 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5ea7ad41 - Registering current configuration as safe fallback point
00:40:5000:40:50,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 325 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:5000:40:50lifecycle.test-compile:
00:40:50Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:51Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:51warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:53import omero.grid.RawAccessRequest;
00:40:53 ^
00:40:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:54import omero.grid.RawAccessRequest;
00:40:54 ^
00:40:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:54import omero.grid.RawAccessRequest;
00:40:54 ^
00:40:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:54import omero.model.ImportJob;
00:40:54 ^
00:40:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:54import omero.model.ImportJobI;
00:40:54 ^
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:55 IObject link = (IObject) linkClass.newInstance();
00:40:55 ^
00:40:55 where T is a type-variable:
00:40:55 T extends Object declared in class Class
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:55 T copy = (T) obj.getClass().newInstance();
00:40:55 ^
00:40:55 where T is a type-variable:
00:40:55 T extends Object declared in class Class
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:55 RawAccessRequest raw = new RawAccessRequest();
00:40:55 ^
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:55 RawAccessRequest raw = new RawAccessRequest();
00:40:55 ^
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:55 raw.repoUuid = legacy.root().getHash().getValue();
00:40:55 ^
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:55 raw.command = "rm";
00:40:55 ^
00:40:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:55 raw.args = Arrays.asList(path);
00:40:55 ^
00:40:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:56 final IObject link = linkClass.newInstance();
00:40:56 ^
00:40:56 where T is a type-variable:
00:40:56 T extends Object declared in class Class
00:40:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:56 originalLink.setChild(annotationClass.newInstance());
00:40:56 ^
00:40:56 where T is a type-variable:
00:40:56 T extends Object declared in class Class
00:40:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:56 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:56 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:57 final RawAccessRequest request = new RawAccessRequest();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:57 final RawAccessRequest request = new RawAccessRequest();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:57 request.repoUuid = repo.root().getHash().getValue();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:57 request.command = "exists";
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:57 request.args = Collections.singletonList(dirPath);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:57 final RawAccessRequest request = new RawAccessRequest();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:57 final RawAccessRequest request = new RawAccessRequest();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:57 request.repoUuid = repo.root().getHash().getValue();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:57 request.command = "exists";
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:57 request.args = Collections.singletonList(dirName);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:57 final ImportJob importJob = new ImportJobI();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:57 final ImportJob importJob = new ImportJobI();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:57 importJob.setImageName(omero.rtypes.rstring(name));
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:57 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:57 final String savedName = sent.getImageName().getValue().toString();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:57 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:57 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:57 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:57 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:57 table = svc.getTable(f.getId().getValue());
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:57 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:57 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:57 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:57 svc.getShapeStatsRestricted(
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:57 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:57 ^
00:40:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:57 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:58 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:58 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:58 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:58 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:58 p2.setRelatedTo(p1);
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:58 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:58 pixels1.setRelatedTo(pixels2);
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:58 Pixels pixels = pixels1.getRelatedTo();
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:58 Assert.assertNull(pixels1.getRelatedTo());
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:58 pixels1.setRelatedTo(pixels2);
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:58 Pixels pixels = pixels1.getRelatedTo();
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:58 Assert.assertNull(pixels1.getRelatedTo());
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:58 ^
00:40:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:58 ^
00:40:58Note: Some input files use unchecked or unsafe operations.
00:40:58Note: Recompile with -Xlint:unchecked for details.
00:40:5888 warnings
00:40:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_40718558.tmp
00:40:58Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:58:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-830c12e3ce-ice36 :: integration :: Fri May 24 00:40:47 UTC 2024
00:40:58 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:58:: publishing :: omero#OmeroJava-test
00:40:58 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-830c12e3ce-ice36.jar
00:40:58 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-830c12e3ce-ice36.xml
00:40:5800:40:58build-eclipse:
00:40:58No sub-builds to iterate on
00:40:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:5800:40:58retrieve:
00:40:58:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:0100:41:01prepare:
00:41:01Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:0300:41:03release-clients:
00:41:03Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-830c12e3ce-ice36.zip
00:41:0900:41:09release-zip:
00:41:09Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-830c12e3ce-ice36.zip
00:41:2100:41:21BUILD SUCCESSFUL
00:41:21Total time: 1 minute 55 seconds
00:41:21++ '[' -d .git ']'
00:41:21++ python3 ./build.py release-src
00:41:21OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:41:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:2200:41:22release-src-git:
00:41:22Releasing openmicroscopy-5.6.3-467-830c12e3ce-ice36
00:41:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-830c12e3ce-ice36.zip
00:41:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-830c12e3ce-ice36-base.zip
00:41:2500:41:25BUILD SUCCESSFUL
00:41:25Total time: 3 seconds
00:41:25++ echo BUILD_NUMBER=72
00:41:25++ echo OMERO_BRANCH=merge_ci
00:41:25++ git_info
00:41:25+++ git rev-parse HEAD
00:41:25++ HEAD=830c12e3ced75b70971eddbde4c583ca85a17c87
00:41:25++ git log --max-count=1 830c12e3ced75b70971eddbde4c583ca85a17c87
00:41:25++ env
00:41:25++ sort
00:41:25Archiving artifacts
00:41:53Finished: SUCCESS
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