00:38:55Started by upstream project "Trigger" build number 9600:38:55originally caused by:
00:38:55 Started by timer
00:38:55Running as SYSTEM
00:38:55Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:55The recommended git tool is: NONE
00:38:55No credentials specified
00:38:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:55Fetching changes from the remote Git repository
00:38:55 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:55Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:38:55 > git --version # timeout=10
00:38:55 > git --version # 'git version 2.39.3'
00:38:55 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:58 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:58Checking out Revision 0220375ff29c1bd56cdc5b1c9704bbf98e44b12c (origin/merge_ci)
00:38:58 > git config core.sparsecheckout # timeout=10
00:38:58 > git checkout -f 0220375ff29c1bd56cdc5b1c9704bbf98e44b12c # timeout=10
00:38:58Commit message: "Add version.properties to etc/omero.properties"
00:38:58 > git rev-list --no-walk db8274c74113d86b67cae1c7360dfec3fc96e100 # timeout=10
00:38:58Cleaning workspace
00:38:58 > git rev-parse --verify HEAD # timeout=10
00:38:58Resetting working tree
00:38:58 > git reset --hard # timeout=10
00:38:58 > git clean -fdx # timeout=10
00:38:58Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8300:38:58[OMERO-build] $ /bin/bash -xe /tmp/jenkins18205282985141855244.sh
00:38:58+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:38:58+ cd src
00:38:58+ export OMERO_BRANCH=merge_ci
00:38:58+ OMERO_BRANCH=merge_ci
00:38:58+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:58+ source /home/omero/settings.env
00:38:58++ OMERO_DB_HOST=pg
00:38:58++ OMERO_DB_USER=postgres
00:38:58++ OMERO_DB_PASS=
00:38:58++ OMERO_ROOT_PASS=omero
00:38:58++ OMERO_DATA_DIR=/OMERO
00:38:58++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:58+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:39:02Collecting zeroc-ice==3.6.5
00:39:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:05WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:05You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:05Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0)
00:39:06Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:39:06Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:06Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:06Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:06Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:06Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:06Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:06Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:06Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:06Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:06Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:06Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:06Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:06WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:06You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:06+ source docs/hudson/OMERO.sh
00:39:06++ set -e
00:39:06++ set -u
00:39:06++ set -x
00:39:06++ source docs/hudson/functions.sh
00:39:06++ echo Building merge_ci
00:39:06Building merge_ci
00:39:06++ python3 ./build.py build-dev release-all
00:39:06OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:0700:39:07check-ivy:
00:39:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:07Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:08:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0900:39:09build-scons:
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:09No sub-builds to iterate on
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:0900:39:09buildlist:
00:39:09:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0900:39:09clean:
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:1000:39:10python-clean:
00:39:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-0220375ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:10 warnings.warn(
00:39:10running clean
00:39:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:1000:39:10python-clean:
00:39:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-0220375ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:10 warnings.warn(
00:39:10running clean
00:39:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:1000:39:10python-clean:
00:39:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-0220375ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:10 warnings.warn(
00:39:10running clean
00:39:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:10Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:1000:39:10build-scons:
00:39:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:1000:39:10build:
00:39:10No sub-builds to iterate on
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:1100:39:11tools-init:
00:39:11no-op
00:39:1100:39:11retrieve:
00:39:11:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:0400:40:04prepare:
00:40:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:0400:40:04pre-compile:
00:40:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:0400:40:04compile:
00:40:04no-op
00:40:0400:40:04package:
00:40:04Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:0500:40:05install:
00:40:05:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-469-0220375ff2-ice36 :: integration :: Fri Jun 07 00:39:10 UTC 2024
00:40:05 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:05:: publishing :: omero#omero_client
00:40:05 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-0220375ff2-ice36/omero_client-5.6.3-469-0220375ff2-ice36.jar
00:40:05 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-0220375ff2-ice36/omero_client-5.6.3-469-0220375ff2-ice36.xml
00:40:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:0500:40:05retrieve:
00:40:05:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:05Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:0500:40:05dist:
00:40:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:05Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:05Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:05Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:05Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:05Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:05Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:06Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:0600:40:06copy-licenses:
00:40:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:06Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:06Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:0600:40:06copy-history:
00:40:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:0600:40:06copy-etc:
00:40:06Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:0700:40:07copy-sql:
00:40:07Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:2400:40:24copy-server:
00:40:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:2400:40:24copy-client:
00:40:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:40:2600:40:26update-version:
00:40:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:2600:40:26create-workdirs:
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:2600:40:26copy-luts:
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:26Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:2600:40:26test-compile:
00:40:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2700:40:27testng-init:
00:40:27:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:3000:40:30,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:3000:40:30,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
00:40:3000:40:30,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:3000:40:30,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:3000:40:30,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:3000:40:30,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:3000:40:30,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:3000:40:30,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:3000:40:30,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:3000:40:30,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:3000:40:30,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:3000:40:30,494 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:3000:40:30,494 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:3000:40:30,494 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:3000:40:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:3000:40:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:3000:40:30,788 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:3000:40:30,792 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:3000:40:30,792 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
00:40:3000:40:30,869 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:3000:40:30,870 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:3000:40:30,870 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:3000:40:30,870 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:3000:40:30,870 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:3000:40:30,870 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:3000:40:30,870 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:3000:40:30,871 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
00:40:3000:40:30,873 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
00:40:3000:40:30,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 381 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:3000:40:30lifecycle.test-compile:
00:40:30Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:30Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:31warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:34import omero.grid.RawAccessRequest;
00:40:34 ^
00:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:34import omero.grid.RawAccessRequest;
00:40:34 ^
00:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:34import omero.grid.RawAccessRequest;
00:40:34 ^
00:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:34import omero.model.ImportJob;
00:40:34 ^
00:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:34import omero.model.ImportJobI;
00:40:34 ^
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:35 IObject link = (IObject) linkClass.newInstance();
00:40:35 ^
00:40:35 where T is a type-variable:
00:40:35 T extends Object declared in class Class
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:35 T copy = (T) obj.getClass().newInstance();
00:40:35 ^
00:40:35 where T is a type-variable:
00:40:35 T extends Object declared in class Class
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:35 RawAccessRequest raw = new RawAccessRequest();
00:40:35 ^
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:35 RawAccessRequest raw = new RawAccessRequest();
00:40:35 ^
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:35 raw.repoUuid = legacy.root().getHash().getValue();
00:40:35 ^
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:35 raw.command = "rm";
00:40:35 ^
00:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:35 raw.args = Arrays.asList(path);
00:40:35 ^
00:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:36 final IObject link = linkClass.newInstance();
00:40:36 ^
00:40:36 where T is a type-variable:
00:40:36 T extends Object declared in class Class
00:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:36 originalLink.setChild(annotationClass.newInstance());
00:40:36 ^
00:40:36 where T is a type-variable:
00:40:36 T extends Object declared in class Class
00:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:36 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:36 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37 final RawAccessRequest request = new RawAccessRequest();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37 final RawAccessRequest request = new RawAccessRequest();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:37 request.repoUuid = repo.root().getHash().getValue();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:37 request.command = "exists";
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:37 request.args = Collections.singletonList(dirPath);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37 final RawAccessRequest request = new RawAccessRequest();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37 final RawAccessRequest request = new RawAccessRequest();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:37 request.repoUuid = repo.root().getHash().getValue();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:37 request.command = "exists";
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:37 request.args = Collections.singletonList(dirName);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37 final ImportJob importJob = new ImportJobI();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:37 final ImportJob importJob = new ImportJobI();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:37 importJob.setImageName(omero.rtypes.rstring(name));
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:37 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:37 final String savedName = sent.getImageName().getValue().toString();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:37 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:37 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:37 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:37 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:37 table = svc.getTable(f.getId().getValue());
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:37 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:37 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:37 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:37 svc.getShapeStatsRestricted(
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:37 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:37 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:38 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:38 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:38 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:38 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:38 p2.setRelatedTo(p1);
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:38 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:38 pixels1.setRelatedTo(pixels2);
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:38 Pixels pixels = pixels1.getRelatedTo();
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:38 Assert.assertNull(pixels1.getRelatedTo());
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:38 pixels1.setRelatedTo(pixels2);
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:38 Pixels pixels = pixels1.getRelatedTo();
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:38 Assert.assertNull(pixels1.getRelatedTo());
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:38 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:38 ^
00:40:38Note: Some input files use unchecked or unsafe operations.
00:40:38Note: Recompile with -Xlint:unchecked for details.
00:40:3888 warnings
00:40:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1412186574.tmp
00:40:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:38:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-469-0220375ff2-ice36 :: integration :: Fri Jun 07 00:40:26 UTC 2024
00:40:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:38:: publishing :: omero#OmeroJava-test
00:40:38 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-0220375ff2-ice36.jar
00:40:38 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-0220375ff2-ice36.xml
00:40:3800:40:38build-eclipse:
00:40:38No sub-builds to iterate on
00:40:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:3900:40:39retrieve:
00:40:39:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4100:40:41prepare:
00:40:41Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:4300:40:43release-clients:
00:40:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-469-0220375ff2-ice36.zip
00:40:5000:40:50release-zip:
00:40:50Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-469-0220375ff2-ice36.zip
00:41:0300:41:03BUILD SUCCESSFUL
00:41:03Total time: 1 minute 56 seconds
00:41:03++ '[' -d .git ']'
00:41:03++ python3 ./build.py release-src
00:41:03OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:41:03Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:0400:41:04release-src-git:
00:41:04Releasing openmicroscopy-5.6.3-469-0220375ff2-ice36
00:41:06 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-0220375ff2-ice36.zip
00:41:06 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-0220375ff2-ice36-base.zip
00:41:0800:41:08BUILD SUCCESSFUL
00:41:08Total time: 4 seconds
00:41:08++ echo BUILD_NUMBER=84
00:41:08++ echo OMERO_BRANCH=merge_ci
00:41:08++ git_info
00:41:08+++ git rev-parse HEAD
00:41:08++ HEAD=0220375ff29c1bd56cdc5b1c9704bbf98e44b12c
00:41:08++ git log --max-count=1 0220375ff29c1bd56cdc5b1c9704bbf98e44b12c
00:41:08++ env
00:41:08++ sort
00:41:08Archiving artifacts
00:41:37Finished: SUCCESS
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