01:44:42Started by upstream project "Trigger" build number 11101:44:42originally caused by:
01:44:42 Started by timer
01:44:42Running as SYSTEM
01:44:42Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:44:42The recommended git tool is: NONE
01:44:42No credentials specified
01:44:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:44:42Fetching changes from the remote Git repository
01:44:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:44:42Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:44:42 > git --version # timeout=10
01:44:42 > git --version # 'git version 2.39.3'
01:44:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:44:46 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:44:46Checking out Revision 1c6eaf1a3844e007c354084ae02cb4982564d791 (origin/merge_ci)
01:44:46 > git config core.sparsecheckout # timeout=10
01:44:46 > git checkout -f 1c6eaf1a3844e007c354084ae02cb4982564d791 # timeout=10
01:44:46Commit message: "Add version.properties to etc/omero.properties"
01:44:46 > git rev-list --no-walk 80a028c3ae0ce483215ab4f20e49bcfc483e63f7 # timeout=10
01:44:46Cleaning workspace
01:44:46 > git rev-parse --verify HEAD # timeout=10
01:44:46Resetting working tree
01:44:46 > git reset --hard # timeout=10
01:44:46 > git clean -fdx # timeout=10
01:44:46Copied 6 artifacts from "OMERO-python-superbuild-build" build number 9801:44:46[OMERO-build] $ /bin/bash -xe /tmp/jenkins14018648978743195974.sh
01:44:46+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
01:44:46+ cd src
01:44:46+ export OMERO_BRANCH=merge_ci
01:44:46+ OMERO_BRANCH=merge_ci
01:44:46+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:44:46+ source /home/omero/settings.env
01:44:46++ OMERO_DB_HOST=pg
01:44:46++ OMERO_DB_USER=postgres
01:44:46++ OMERO_DB_PASS=
01:44:46++ OMERO_ROOT_PASS=omero
01:44:46++ OMERO_DATA_DIR=/OMERO
01:44:46++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:44:46+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:44:50+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl01:44:51Collecting zeroc-ice==3.6.5
01:44:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:44:54WARNING: You are using pip version 21.2.3; however, version 24.1 is available.
01:44:54You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:44:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
01:44:54Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.1.0)
01:44:55Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
01:44:55Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
01:44:55Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
01:44:55Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
01:44:55Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
01:44:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:44:55Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:44:55Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
01:44:55Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
01:44:55Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
01:44:55Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
01:44:55Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
01:44:55Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
01:44:55WARNING: You are using pip version 21.2.3; however, version 24.1 is available.
01:44:55You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:44:55+ source docs/hudson/OMERO.sh
01:44:55++ set -e
01:44:55++ set -u
01:44:55++ set -x
01:44:55++ source docs/hudson/functions.sh
01:44:55++ echo Building merge_ci
01:44:55Building merge_ci
01:44:55++ python3 ./build.py build-dev release-all
01:44:55OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:44:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:44:5701:44:57check-ivy:
01:44:57Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:44:57Created dir: /home/omero/workspace/OMERO-build/src/target
01:44:58:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:44:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:44:5801:44:58build-scons:
01:44:58Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:44:59No sub-builds to iterate on
01:44:59Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:44:5901:44:59buildlist:
01:44:59:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:44:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:44:5901:44:59clean:
01:44:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:44:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:44:5901:44:59python-clean:
01:44:59WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:44:59/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:44:59 warnings.warn(
01:44:59running clean
01:45:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:45:0001:45:00python-clean:
01:45:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:45:00/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:45:00 warnings.warn(
01:45:00running clean
01:45:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:0001:45:00python-clean:
01:45:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:45:00/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:45:00 warnings.warn(
01:45:00running clean
01:45:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:45:00Deleting directory /home/omero/workspace/OMERO-build/src/target
01:45:0001:45:00build-scons:
01:45:00Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:45:0001:45:00build:
01:45:00No sub-builds to iterate on
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:45:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:45:0001:45:00tools-init:
01:45:00no-op
01:45:0101:45:01retrieve:
01:45:01:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:45:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:1901:45:19prepare:
01:45:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:45:1901:45:19pre-compile:
01:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:45:1901:45:19compile:
01:45:19no-op
01:45:1901:45:19package:
01:45:19Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:45:2001:45:20install:
01:45:20:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-474-1c6eaf1a38-ice36 :: integration :: Sat Jun 22 01:45:00 UTC 2024
01:45:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:45:20:: publishing :: omero#omero_client
01:45:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-474-1c6eaf1a38-ice36/omero_client-5.6.3-474-1c6eaf1a38-ice36.jar
01:45:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-474-1c6eaf1a38-ice36/omero_client-5.6.3-474-1c6eaf1a38-ice36.xml
01:45:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:2001:45:20retrieve:
01:45:20:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:45:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:45:2201:45:22dist:
01:45:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:45:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:45:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:45:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:45:22Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:45:22Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
01:45:22Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:45:22Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:45:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:45:2201:45:22copy-licenses:
01:45:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:45:22Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:45:22Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:45:2301:45:23copy-history:
01:45:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:45:2301:45:23copy-etc:
01:45:23Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:45:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:45:2301:45:23copy-sql:
01:45:23Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:45:4101:45:41copy-server:
01:45:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:45:4101:45:41copy-client:
01:45:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:45:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:45:4301:45:43update-version:
01:45:43Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:45:4301:45:43create-workdirs:
01:45:43Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:45:43Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:45:4301:45:43copy-luts:
01:45:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:45:43Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:45:4401:45:44test-compile:
01:45:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:45:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:45:4401:45:44testng-init:
01:45:44:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:45:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:4801:45:48,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:45:4801:45:48,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - No custom configurators were discovered as a service.
01:45:4801:45:48,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:45:4801:45:48,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:45:4801:45:48,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:45:4801:45:48,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:45:4801:45:48,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:45:4801:45:48,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:45:4801:45:48,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:45:4801:45:48,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:45:4801:45:48,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:45:4801:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs multiple times on the classpath.
01:45:4801:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:45:4801:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:45:4801:45:48,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:45:4801:45:48,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:45:4801:45:48,359 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:45:4801:45:48,361 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:45:4801:45:48,361 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - Please move "immediateFlush" property into the enclosing appender.
01:45:4801:45:48,430 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - Setting the "immediateFlush" property of the enclosing appender to true
01:45:4801:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:45:4801:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:45:4801:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:45:4801:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:45:4801:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:45:4801:45:48,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:45:4801:45:48,432 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@57eb5324 - End of configuration.
01:45:4801:45:48,434 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@170a158d - Registering current configuration as safe fallback point
01:45:4801:45:48,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:45:4801:45:48lifecycle.test-compile:
01:45:48Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:45:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:45:48warning: [options] bootstrap class path not set in conjunction with -source 8
01:45:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:52import omero.grid.RawAccessRequest;
01:45:52 ^
01:45:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:52import omero.grid.RawAccessRequest;
01:45:52 ^
01:45:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:52import omero.grid.RawAccessRequest;
01:45:52 ^
01:45:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:52import omero.model.ImportJob;
01:45:52 ^
01:45:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:45:52import omero.model.ImportJobI;
01:45:52 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:45:53 IObject link = (IObject) linkClass.newInstance();
01:45:53 ^
01:45:53 where T is a type-variable:
01:45:53 T extends Object declared in class Class
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:45:53 T copy = (T) obj.getClass().newInstance();
01:45:53 ^
01:45:53 where T is a type-variable:
01:45:53 T extends Object declared in class Class
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:53 RawAccessRequest raw = new RawAccessRequest();
01:45:53 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:53 RawAccessRequest raw = new RawAccessRequest();
01:45:53 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:45:53 raw.repoUuid = legacy.root().getHash().getValue();
01:45:53 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:45:53 raw.command = "rm";
01:45:53 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:45:53 raw.args = Arrays.asList(path);
01:45:53 ^
01:45:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:45:53 final IObject link = linkClass.newInstance();
01:45:53 ^
01:45:53 where T is a type-variable:
01:45:53 T extends Object declared in class Class
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:45:54 originalLink.setChild(annotationClass.newInstance());
01:45:54 ^
01:45:54 where T is a type-variable:
01:45:54 T extends Object declared in class Class
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:45:54 RoiResult r = svc.findByImage(id, new RoiOptions());
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:54 final RawAccessRequest request = new RawAccessRequest();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:54 final RawAccessRequest request = new RawAccessRequest();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:45:54 request.repoUuid = repo.root().getHash().getValue();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:45:54 request.command = "exists";
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:45:54 request.args = Collections.singletonList(dirPath);
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:54 final RawAccessRequest request = new RawAccessRequest();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:45:54 final RawAccessRequest request = new RawAccessRequest();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:45:54 request.repoUuid = repo.root().getHash().getValue();
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:45:54 request.command = "exists";
01:45:54 ^
01:45:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:45:54 request.args = Collections.singletonList(dirName);
01:45:54 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:55 final ImportJob importJob = new ImportJobI();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:45:55 final ImportJob importJob = new ImportJobI();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:45:55 importJob.setImageName(omero.rtypes.rstring(name));
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:45:55 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:45:55 final String savedName = sent.getImageName().getValue().toString();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:45:55 final String savedDesc = sent.getImageDescription().getValue().toString();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:45:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:45:55 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:45:55 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 RoiResult r = svc.findByImage(image.getId().getValue(),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:45:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:45:55 table = svc.getTable(f.getId().getValue());
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 RoiResult r = svc.findByImage(image.getId().getValue(),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:45:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:45:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:45:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:45:55 svc.getShapeStatsRestricted(
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:45:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:45:55 ^
01:45:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:45:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:45:55 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:45:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:45:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:45:56 request.typesToIgnore = Collections.singletonList("Annotation");
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:45:56 request.typesToIgnore = Collections.singletonList("Annotation");
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:45:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:45:56 p2.setRelatedTo(p1);
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:45:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:45:56 pixels1.setRelatedTo(pixels2);
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:45:56 Pixels pixels = pixels1.getRelatedTo();
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:45:56 Assert.assertNull(pixels1.getRelatedTo());
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:45:56 pixels1.setRelatedTo(pixels2);
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:45:56 Pixels pixels = pixels1.getRelatedTo();
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:45:56 Assert.assertNull(pixels1.getRelatedTo());
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:45:56 ^
01:45:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:45:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:45:56 ^
01:45:56Note: Some input files use unchecked or unsafe operations.
01:45:56Note: Recompile with -Xlint:unchecked for details.
01:45:5688 warnings
01:45:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1624348925.tmp
01:45:56Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:45:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:56:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-474-1c6eaf1a38-ice36 :: integration :: Sat Jun 22 01:45:44 UTC 2024
01:45:56 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:45:56:: publishing :: omero#OmeroJava-test
01:45:56 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-474-1c6eaf1a38-ice36.jar
01:45:56 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-474-1c6eaf1a38-ice36.xml
01:45:5601:45:56build-eclipse:
01:45:56No sub-builds to iterate on
01:45:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:45:5601:45:56retrieve:
01:45:56:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:45:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:45:5901:45:59prepare:
01:45:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:46:0101:46:01release-clients:
01:46:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-474-1c6eaf1a38-ice36.zip
01:46:0701:46:07release-zip:
01:46:07Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-474-1c6eaf1a38-ice36.zip
01:46:2001:46:20BUILD SUCCESSFUL
01:46:20Total time: 1 minute 24 seconds
01:46:20++ '[' -d .git ']'
01:46:20++ python3 ./build.py release-src
01:46:20OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:46:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:46:2101:46:21release-src-git:
01:46:21Releasing openmicroscopy-5.6.3-474-1c6eaf1a38-ice36
01:46:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-474-1c6eaf1a38-ice36.zip
01:46:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-474-1c6eaf1a38-ice36-base.zip
01:46:2501:46:25BUILD SUCCESSFUL
01:46:25Total time: 4 seconds
01:46:25++ echo BUILD_NUMBER=99
01:46:25++ echo OMERO_BRANCH=merge_ci
01:46:25++ git_info
01:46:25+++ git rev-parse HEAD
01:46:25++ HEAD=1c6eaf1a3844e007c354084ae02cb4982564d791
01:46:25++ git log --max-count=1 1c6eaf1a3844e007c354084ae02cb4982564d791
01:46:25++ env
01:46:25++ sort
01:46:25Archiving artifacts
01:46:55Finished: SUCCESS
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