![[Jenkins]](/jenkins/static/0ce0ee70/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 116 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-insight-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-insight-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master) > git config core.sparsecheckout # timeout=10 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 Commit message: "Merge pull request #17 from jburel/python3" > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-insight-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-insight.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-insight.git > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-insight.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision efbf7e35ce95c195c753051f26f92a075e8b5dd3 (refs/remotes/origin/master) Commit message: "Bump version: 5.8.4 → 5.8.5-SNAPSHOT" > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10 > git rev-list --no-walk efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 104 [Pipeline] sh + pushd build ~/workspace/OMERO-insight-push/build ~/workspace/OMERO-insight-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-insight-push + python3 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + python3 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.1.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-24.1.1 + python3 -m pip install scc Collecting scc Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.19.1-py3-none-any.whl (48 kB) Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.32.3-py3-none-any.whl (64 kB) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Using cached certifi-2024.6.2-py3-none-any.whl (164 kB) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl (3.9 MB) Using cached idna-3.7-py3-none-any.whl (66 kB) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.8 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-insight.git + BASE_REPO=omero-insight.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2024-06-27 00:57:55,312 [ scc.config] DEBUG Found github.token 2024-06-27 00:57:55,315 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-06-27 00:57:55,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:57:55,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:57:56,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-06-27 00:57:56,297 [ scc.gh] DEBUG 3089 remaining from 5000 (Reset at 01:06 2024-06-27 00:57:56,298 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-06-27 00:57:56,302 [ scc.git] DEBUG Check current status 2024-06-27 00:57:56,302 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-06-27 00:57:56,306 [ scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT 2024-06-27 00:57:56,306 [ scc.git] DEBUG Calling 'git submodule status' 2024-06-27 00:57:56,349 [ scc.config] DEBUG Found remote.origin.url 2024-06-27 00:57:56,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None 2024-06-27 00:57:57,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-06-27 00:57:57,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-06-27 00:57:58,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-06-27 00:57:58,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-06-27 00:57:58,510 [ scc.git] DEBUG Resetting... 2024-06-27 00:57:58,510 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-06-27 00:57:58,551 [ scc.git] DEBUG HEAD is now at efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT 2024-06-27 00:57:58,551 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-06-27 00:57:58,594 [ scc.git] DEBUG Check current status 2024-06-27 00:57:58,595 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-06-27 00:57:58,599 [ scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT 2024-06-27 00:57:58,599 [ scc.git] DEBUG Calling 'git submodule status' 2024-06-27 00:57:58,641 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-06-27 00:57:58,642 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-06-27 00:57:58,642 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-06-27 00:57:58,642 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-06-27 00:57:58,642 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-06-27 00:57:58,642 [ scc.repo] DEBUG ## PRs found: 2024-06-27 00:57:59,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None 2024-06-27 00:57:59,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None 2024-06-27 00:57:59,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None 2024-06-27 00:58:00,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None 2024-06-27 00:58:00,431 [ scc.repo] DEBUG - PR 436 dominikl 'Update apache common libs' 2024-06-27 00:58:00,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None 2024-06-27 00:58:01,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None 2024-06-27 00:58:01,322 [ scc.repo] DEBUG - PR 385 jburel 'handle case where ROI is not longer in table' 2024-06-27 00:58:01,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None 2024-06-27 00:58:02,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None 2024-06-27 00:58:02,231 [ scc.repo] DEBUG - PR 333 jburel 'drop compatibility to test new Jenkins' 2024-06-27 00:58:02,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None 2024-06-27 00:58:03,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None 2024-06-27 00:58:03,212 [ scc.repo] DEBUG ## Branches found: 2024-06-27 00:58:03,213 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:03,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:03,217 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-06-27 00:58:03,223 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-06-27 00:58:03,224 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-06-27 00:58:03,243 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-06-27 00:58:03,250 [ scc.git] DEBUG Already up to date. 2024-06-27 00:58:03,251 [ scc.git] DEBUG Calling 'git fetch origin pull/333/head' 2024-06-27 00:58:03,686 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:03,686 [ scc.git] DEBUG * branch refs/pull/333/head -> FETCH_HEAD 2024-06-27 00:58:03,692 [ scc.git] DEBUG Calling 'git fetch origin pull/385/head' 2024-06-27 00:58:04,153 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:04,153 [ scc.git] DEBUG * branch refs/pull/385/head -> FETCH_HEAD 2024-06-27 00:58:04,159 [ scc.git] DEBUG Calling 'git fetch origin pull/436/head' 2024-06-27 00:58:04,578 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:04,579 [ scc.git] DEBUG * branch refs/pull/436/head -> FETCH_HEAD 2024-06-27 00:58:04,586 [ scc.git] DEBUG ## Unique users: [] 2024-06-27 00:58:04,586 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:04,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:04,595 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e' 2024-06-27 00:58:04,603 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:04,608 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e' 2024-06-27 00:58:04,678 [ scc.git] DEBUG Auto-merging build.gradle 2024-06-27 00:58:04,681 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-06-27 00:58:04,685 [ scc.git] DEBUG build.gradle | 8 ++++---- 2024-06-27 00:58:04,685 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-) 2024-06-27 00:58:04,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:04,837 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215' 2024-06-27 00:58:04,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:04,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215' 2024-06-27 00:58:05,043 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-06-27 00:58:05,047 [ scc.git] DEBUG .../shoola/agents/measurement/view/ServerROITable.java | 13 ++++++++++--- 2024-06-27 00:58:05,047 [ scc.git] DEBUG 1 file changed, 10 insertions(+), 3 deletions(-) 2024-06-27 00:58:05,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:05,253 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9' 2024-06-27 00:58:05,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:05,264 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9' 2024-06-27 00:58:05,307 [ scc.git] DEBUG Auto-merging build.gradle 2024-06-27 00:58:05,310 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-06-27 00:58:05,313 [ scc.git] DEBUG build.gradle | 3 ++- 2024-06-27 00:58:05,313 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-) 2024-06-27 00:58:05,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:05,659 [ scc.git] DEBUG Calling 'git submodule update' 2024-06-27 00:58:05,700 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:05,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:05,704 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-06-27 00:58:05,746 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faa94704460> has no local changes 2024-06-27 00:58:05,746 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-insight Excluded PRs: - PR 437 dominikl 'Remove apache commons io' (stage: draft) - PR 377 sukunis 'Fix ontology loads' (exclude comment) - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment) Already up to date. Merged PRs: - PR 333 jburel 'drop compatibility to test new Jenkins' - PR 385 jburel 'handle case where ROI is not longer in table' - PR 436 dominikl 'Update apache common libs' Generated by OMERO-insight-push#99 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/99/)' 2024-06-27 00:58:05,762 [ scc.git] DEBUG [detached HEAD 336e24e7b] merge master -Dorg -Snone 2024-06-27 00:58:05,762 [ scc.merge] INFO Repository: ome/omero-insight 2024-06-27 00:58:05,762 [ scc.merge] INFO Excluded PRs: 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 437 dominikl 'Remove apache commons io' (stage: draft) 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 377 sukunis 'Fix ontology loads' (exclude comment) 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment) 2024-06-27 00:58:05,762 [ scc.merge] INFO Already up to date. 2024-06-27 00:58:05,762 [ scc.merge] INFO 2024-06-27 00:58:05,762 [ scc.merge] INFO Merged PRs: 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 333 jburel 'drop compatibility to test new Jenkins' 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 385 jburel 'handle case where ROI is not longer in table' 2024-06-27 00:58:05,762 [ scc.merge] INFO - PR 436 dominikl 'Update apache common libs' 2024-06-27 00:58:05,762 [ scc.merge] INFO 2024-06-27 00:58:05,762 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-06-27 00:58:05,762 [ scc.git] DEBUG Calling 'git remote' Merge all submodules2024-06-27 00:58:06,275 [ scc.config] DEBUG Found github.token 2024-06-27 00:58:06,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-06-27 00:58:06,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:06,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:07,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-06-27 00:58:07,283 [ scc.gh] DEBUG 3044 remaining from 5000 (Reset at 01:06 2024-06-27 00:58:07,284 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-06-27 00:58:07,288 [ scc.git] DEBUG Check current status 2024-06-27 00:58:07,288 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-06-27 00:58:07,292 [ scc.git] DEBUG 336e24e7b merge master -Dorg -Snone 2024-06-27 00:58:07,292 [ scc.git] DEBUG Calling 'git submodule status' 2024-06-27 00:58:07,337 [ scc.config] DEBUG Found remote.origin.url 2024-06-27 00:58:07,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None 2024-06-27 00:58:08,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-06-27 00:58:08,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-06-27 00:58:09,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-06-27 00:58:09,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-06-27 00:58:09,519 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-06-27 00:58:09,566 [ scc.git] DEBUG Resetting... 2024-06-27 00:58:09,567 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-06-27 00:58:09,584 [ scc.git] DEBUG HEAD is now at 336e24e7b merge master -Dorg -Snone 2024-06-27 00:58:09,584 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-06-27 00:58:09,646 [ scc.git] DEBUG Check current status 2024-06-27 00:58:09,647 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-06-27 00:58:09,660 [ scc.git] DEBUG 336e24e7b merge master -Dorg -Snone 2024-06-27 00:58:09,661 [ scc.git] DEBUG Calling 'git submodule status' 2024-06-27 00:58:09,706 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-06-27 00:58:09,707 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-06-27 00:58:09,707 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-06-27 00:58:09,707 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-06-27 00:58:09,707 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-06-27 00:58:09,707 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-06-27 00:58:09,707 [ scc.repo] DEBUG ## PRs found: 2024-06-27 00:58:10,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None 2024-06-27 00:58:10,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None 2024-06-27 00:58:11,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None 2024-06-27 00:58:11,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None 2024-06-27 00:58:12,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None 2024-06-27 00:58:12,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-06-27 00:58:13,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-06-27 00:58:13,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None 2024-06-27 00:58:14,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/e43ef9b64e4734d327b92745588603a350b420c9?per_page=1 HTTP/1.1" 200 None 2024-06-27 00:58:14,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None 2024-06-27 00:58:15,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/status HTTP/1.1" 200 None 2024-06-27 00:58:15,008 [ scc.repo] DEBUG - PR 436 dominikl 'Update apache common libs' 2024-06-27 00:58:15,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None 2024-06-27 00:58:15,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None 2024-06-27 00:58:16,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None 2024-06-27 00:58:16,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-06-27 00:58:17,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-06-27 00:58:17,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None 2024-06-27 00:58:18,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/9466472925265b0b02b7c054c55d62705a9b8215?per_page=1 HTTP/1.1" 200 None 2024-06-27 00:58:18,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None 2024-06-27 00:58:19,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/status HTTP/1.1" 200 None 2024-06-27 00:58:19,151 [ scc.repo] DEBUG - PR 385 jburel 'handle case where ROI is not longer in table' 2024-06-27 00:58:19,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None 2024-06-27 00:58:20,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None 2024-06-27 00:58:20,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None 2024-06-27 00:58:21,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-06-27 00:58:21,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None 2024-06-27 00:58:21,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/b66e93349e2ddb5c1908f922c7c63a46722bd48e?per_page=1 HTTP/1.1" 200 2 2024-06-27 00:58:21,927 [ scc.repo] DEBUG - PR 333 jburel 'drop compatibility to test new Jenkins' 2024-06-27 00:58:22,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None 2024-06-27 00:58:22,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None 2024-06-27 00:58:22,966 [ scc.repo] DEBUG ## Branches found: 2024-06-27 00:58:22,967 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:22,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:22,972 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-06-27 00:58:22,976 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-06-27 00:58:22,977 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-06-27 00:58:22,983 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-06-27 00:58:22,991 [ scc.git] DEBUG Already up to date. 2024-06-27 00:58:22,991 [ scc.git] DEBUG Calling 'git fetch origin pull/333/head' 2024-06-27 00:58:23,424 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:23,424 [ scc.git] DEBUG * branch refs/pull/333/head -> FETCH_HEAD 2024-06-27 00:58:23,430 [ scc.git] DEBUG Calling 'git fetch origin pull/385/head' 2024-06-27 00:58:23,827 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:23,827 [ scc.git] DEBUG * branch refs/pull/385/head -> FETCH_HEAD 2024-06-27 00:58:23,833 [ scc.git] DEBUG Calling 'git fetch origin pull/436/head' 2024-06-27 00:58:24,232 [ scc.git] DEBUG From https://github.com/ome/omero-insight 2024-06-27 00:58:24,233 [ scc.git] DEBUG * branch refs/pull/436/head -> FETCH_HEAD 2024-06-27 00:58:24,238 [ scc.git] DEBUG ## Unique users: [] 2024-06-27 00:58:24,238 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:24,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:24,242 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e' 2024-06-27 00:58:24,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:24,251 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e' 2024-06-27 00:58:24,257 [ scc.git] DEBUG Already up to date. 2024-06-27 00:58:24,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:24,419 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215' 2024-06-27 00:58:24,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:24,435 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215' 2024-06-27 00:58:24,462 [ scc.git] DEBUG Already up to date. 2024-06-27 00:58:24,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:24,821 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9' 2024-06-27 00:58:24,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:24,833 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9' 2024-06-27 00:58:24,840 [ scc.git] DEBUG Already up to date. 2024-06-27 00:58:25,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-06-27 00:58:25,233 [ scc.git] DEBUG Calling 'git submodule update' 2024-06-27 00:58:25,273 [ scc.git] DEBUG Get sha1 of %s 2024-06-27 00:58:25,274 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-06-27 00:58:25,278 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-06-27 00:58:25,318 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-06-27 00:58:25,329 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae7e635460> has no local changes 2024-06-27 00:58:25,330 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-insight Excluded PRs: - PR 437 dominikl 'Remove apache commons io' (stage: draft) - PR 377 sukunis 'Fix ontology loads' (exclude comment) - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment) Already up to date. Merged PRs: - PR 333 jburel 'drop compatibility to test new Jenkins' - PR 385 jburel 'handle case where ROI is not longer in table' - PR 436 dominikl 'Update apache common libs' Generated by OMERO-insight-push#99 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/99/)' 2024-06-27 00:58:25,343 [ scc.git] DEBUG [detached HEAD 2c571b95b] merge master -Dorg -Ssuccess-only 2024-06-27 00:58:25,344 [ scc.merge] INFO Repository: ome/omero-insight 2024-06-27 00:58:25,344 [ scc.merge] INFO Excluded PRs: 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 437 dominikl 'Remove apache commons io' (stage: draft) 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 377 sukunis 'Fix ontology loads' (exclude comment) 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment) 2024-06-27 00:58:25,344 [ scc.merge] INFO Already up to date. 2024-06-27 00:58:25,344 [ scc.merge] INFO 2024-06-27 00:58:25,344 [ scc.merge] INFO Merged PRs: 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 333 jburel 'drop compatibility to test new Jenkins' 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 385 jburel 'handle case where ROI is not longer in table' 2024-06-27 00:58:25,344 [ scc.merge] INFO - PR 436 dominikl 'Update apache common libs' 2024-06-27 00:58:25,344 [ scc.merge] INFO 2024-06-27 00:58:25,344 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-06-27 00:58:25,344 [ scc.git] DEBUG Calling 'git remote' Update component versions Updating omero-gateway from 5.9.1 to 5.9.2-SNAPSHOT Commit all component version changes [detached HEAD b2aaea1c4] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) 2024-06-27 00:58:31,949 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-insight/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS