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08:27:11 New dataset, Id: 9261
08:27:11 New dataset 2, Id: 9262
08:27:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
08:27:11 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
08:27:11 [[ 0 0 0 ... 102 103 104]
08:27:11 [ 0 0 0 ... 102 103 104]
08:27:11 [ 0 0 0 ... 102 103 104]
08:27:11 ...
08:27:11 [ 5 6 7 ... 102 103 104]
08:27:11 [ 5 6 7 ... 102 103 104]
08:27:11 [ 5 6 7 ... 102 103 104]]
08:27:11 shape: (100, 100)
08:27:11 min: 0 max: 104 pixel type: uint8
08:27:11 Average : 53.9125
08:27:11 Getting data for T, tile: 0 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 1 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 2 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 3 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 4 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 5 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 6 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 7 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 8 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 9 (256.0, 0, 10, 512)
08:27:11 kymograph_data (512, 100)
08:27:11 Attaching kymograph.png to image
08:27:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
08:27:11 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
08:27:11 [[ 0 0 0 ... 102 103 104]
08:27:11 [ 0 0 0 ... 102 103 104]
08:27:11 [ 0 0 0 ... 102 103 104]
08:27:11 ...
08:27:11 [ 5 6 7 ... 102 103 104]
08:27:11 [ 5 6 7 ... 102 103 104]
08:27:11 [ 5 6 7 ... 102 103 104]]
08:27:11 shape: (100, 100)
08:27:11 min: 0 max: 104 pixel type: uint8
08:27:11 Average : 53.9125
08:27:11 Getting data for T, tile: 0 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 1 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 2 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 3 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 4 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 5 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 6 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 7 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 8 (256.0, 0, 10, 512)
08:27:11 Getting data for T, tile: 9 (256.0, 0, 10, 512)
08:27:11 kymograph_data (512, 100)
08:27:11 Attaching kymograph.png to image
08:27:11 No file downloaded. Project not rated.
08:27:11 New image, Id: 13562
08:27:11 Starting at: http://nginx/web/api/
08:27:11 CSRF token aTC22JOfxFVSu3qll7NiYTLXeejM1DgB
08:27:11 Servers:
08:27:11 -id: 1
08:27:11 name: omero
08:27:11 host: omero
08:27:11 port: 4064
08:27:11 -id: 2
08:27:11 name: testintegration
08:27:11 host: testintegration
08:27:11 port: 14064
08:27:11 eventContext {'sessionId': 24739, 'sessionUuid': 'bb889e16-9dcb-4c3d-9662-82cc78e017f4', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
08:27:11 Projects:
08:27:11 2 Project 0
08:27:11 3 Project 0
08:27:11 Created Project: 9206 API TEST foo
08:27:11 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 9206, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/9206/datasets/'}}
08:27:11 !! 10/08/24 08:27:11.432 error: communicator not destroyed during global destruction.+ deactivate
08:27:11 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
08:27:11 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:27:11 + export PATH
08:27:11 + unset _OLD_VIRTUAL_PATH
08:27:11 + '[' -n '' ']'
08:27:11 + '[' -n /bin/bash -o -n '' ']'
08:27:11 + hash -r
08:27:11 + '[' -n '' ']'
08:27:11 + unset VIRTUAL_ENV
08:27:11 + '[' '!' '' = nondestructive ']'
08:27:11 + unset -f deactivate
08:27:11 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
08:27:11 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
08:27:13 Note: Some input files use unchecked or unsafe operations.
08:27:13 Note: Recompile with -Xlint:unchecked for details.
08:27:13 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
08:27:17 omero.cmd.Delete2Response@6b54655f
08:27:17 omero.cmd.Delete2Response@4c6daf0
08:27:17 one [class java.lang.String] 1.0 [class java.lang.Double]
08:27:17 two [class java.lang.String] 2.0 [class java.lang.Double]
08:27:17 three [class java.lang.String] 3.0 [class java.lang.Double]
08:27:18 -1.0
08:27:18 0
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08:27:23
08:27:23 List Datasets:
08:27:23 ID: 8 Name: MyDataset
08:27:23 ID: 9 Name: MyDataset
08:27:23 ID: 10 Name: MyDataset
08:27:23 ID: 14 Name: MyDataset
08:27:23 ID: 15 Name: MyDataset
08:27:23 ID: 16 Name: MyDataset
08:27:23 ID: 58 Name: MyDataset
08:27:23 ID: 59 Name: MyDataset
08:27:23 ID: 60 Name: MyDataset
08:27:23 ID: 64 Name: MyDataset
08:27:23
08:27:23 List Tags:
08:27:23 ID: 16 NS: omero.training.demo
08:27:23 ID: 17 NS: omero.training.demo
08:27:23 ID: 18 NS: omero.training.demo
08:27:23 ID: 66 NS: omero.training.demo
08:27:23 ID: 67 NS: omero.training.demo
08:27:23 ID: 68 NS: omero.training.demo
08:27:23 ID: 116 NS: omero.training.demo
08:27:23 ID: 117 NS: omero.training.demo
08:27:23 ID: 118 NS: omero.training.demo
08:27:23 ID: 166 NS: omero.training.demo
08:27:24 Dataset:3808 MyDataset
08:27:24 Dataset:8403 Orphaned dataset 1
08:27:24 Dataset:4413 FileAnnotationDelete
08:27:24 Dataset:2711 New Dataset
08:27:24 Dataset:5309 MyDataset
08:27:24 Dataset:4803 Orphaned dataset 1
08:27:24 Dataset:1404 Orphaned dataset 2
08:27:24 Dataset:4914 MyDataset
08:27:24 Dataset:8959 MyDataset
08:27:24 Dataset:6260 MyDataset
08:27:24 Dataset:2461 New Dataset
08:27:24 Dataset:1108 MyDataset
08:27:24 Dataset:6458 MyDataset
08:27:24 Dataset:9159 MyDataset
08:27:24 Dataset:961 New Dataset
08:27:24 Project:351 Project 1
08:27:24 Dataset:8109 MyDataset
08:27:24 Dataset:7209 MyDataset
08:27:24 Dataset:114 MyDataset
08:27:24 Dataset:3859 MyDataset
08:27:24 Dataset:1159 MyDataset
08:27:24 Dataset:3814 MyDataset
08:27:24 Dataset:8410 MyDataset
08:27:24 Dataset:6511 New Dataset
08:27:24 Dataset:6013 FileAnnotationDelete
08:27:24 Dataset:5909 MyDataset
08:27:24 Dataset:8515 MyDataset
08:27:24 Dataset:7558 MyDataset
08:27:24 Dataset:2303 Orphaned dataset 1
08:27:24 Dataset:3263 FileAnnotationDelete
08:27:24 Dataset:3854 Orphaned dataset 2
08:27:24 Dataset:8514 MyDataset
08:27:24 Dataset:2809 MyDataset
08:27:24 Dataset:8063 FileAnnotationDelete
08:27:24 Dataset:5161 New Dataset
08:27:24 Dataset:2065 MyDataset
08:27:24 Dataset:2608 MyDataset
08:27:24 Project:7651 Project 1
08:27:24 Dataset:3754 Orphaned dataset 2
08:27:24 Dataset:6454 Orphaned dataset 2
08:27:24 Dataset:6610 MyDataset
08:27:24 Project:1251 Project 1
08:27:24 Project:1451 Project 1
08:27:24 Dataset:414 MyDataset
08:27:24 Dataset:8963 FileAnnotationDelete
08:27:24 Project:801 Project 1
08:27:24 Dataset:8753 Orphaned dataset 1
08:27:24 Dataset:2163 FileAnnotationDelete
08:27:24 Dataset:8562 New Dataset2
08:27:24 Dataset:3065 MyDataset
08:27:24 Dataset:8404 Orphaned dataset 2
08:27:24 Dataset:5963 FileAnnotationDelete
08:27:24 Dataset:4558 MyDataset
08:27:24 Dataset:1063 FileAnnotationDelete
08:27:24 Dataset:3103 Orphaned dataset 1
08:27:24 Dataset:5408 MyDataset
08:27:24 Dataset:2016 MyDataset
08:27:24 Dataset:960 MyDataset
08:27:24 Dataset:2812 New Dataset2
08:27:24 Dataset:3766 MyDataset
08:27:24 Dataset:3465 MyDataset
08:27:24 Dataset:2814 MyDataset
08:27:24 Dataset:6464 MyDataset
08:27:24 Dataset:6404 Orphaned dataset 2
08:27:24 Dataset:8511 New Dataset
08:27:24 Dataset:8616 MyDataset
08:27:24 Dataset:5863 FileAnnotationDelete
08:27:24 Dataset:2453 Orphaned dataset 1
08:27:24 Dataset:6258 MyDataset
08:27:24 Dataset:8653 Orphaned dataset 1
08:27:24 Dataset:4913 FileAnnotationDelete
08:27:24 Dataset:4762 New Dataset2
08:27:24 Dataset:6015 MyDataset
08:27:24 Project:7801 Project 1
08:27:24 Dataset:2064 MyDataset
08:27:24 Dataset:6713 FileAnnotationDelete
08:27:24 Dataset:4416 MyDataset
08:27:24 Dataset:754 Orphaned dataset 2
08:27:24 Dataset:6660 MyDataset
08:27:24 Dataset:5508 MyDataset
08:27:24 Dataset:6463 FileAnnotationDelete
08:27:24 Dataset:2315 MyDataset
08:27:24 Dataset:1809 MyDataset
08:27:24 Dataset:4553 Orphaned dataset 1
08:27:24 Dataset:4164 MyDataset
08:27:24 Dataset:3261 New Dataset
08:27:24 Dataset:4811 New Dataset
08:27:24 Dataset:3554 Orphaned dataset 2
08:27:24 Dataset:2010 MyDataset
08:27:24 Dataset:1960 MyDataset
08:27:24 Dataset:3559 MyDataset
08:27:24 Dataset:6209 MyDataset
08:27:24 Dataset:1113 FileAnnotationDelete
08:27:24 Project:4951 Project 1
08:27:24 Dataset:8661 New Dataset
08:27:24 Dataset:5210 MyDataset
08:27:24 Dataset:3612 New Dataset2
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08:27:24 Dataset:7761 New Dataset
08:27:24 Dataset:9209 MyDataset
08:27:24 Dataset:408 MyDataset
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08:27:24 Dataset:7061 New Dataset
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08:27:24 Dataset:2108 MyDataset
08:27:24 Dataset:5266 MyDataset
08:27:24 Dataset:3466 MyDataset
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08:27:24 Dataset:8354 Orphaned dataset 2
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08:27:24 Dataset:7864 MyDataset
08:27:24 Dataset:1510 MyDataset
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08:27:24 Dataset:863 FileAnnotationDelete
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08:27:24 Dataset:2416 MyDataset
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08:27:24 Dataset:4916 MyDataset
08:27:24 Dataset:7263 FileAnnotationDelete
08:27:24 Dataset:2314 MyDataset
08:27:24 Dataset:1716 MyDataset
08:27:24 Dataset:8664 MyDataset
08:27:24 Dataset:5764 MyDataset
08:27:24 Dataset:6415 MyDataset
08:27:24 Dataset:7114 MyDataset
08:27:24 Dataset:5760 MyDataset
08:27:24 Dataset:6409 MyDataset
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08:27:24 Dataset:3563 FileAnnotationDelete
08:27:24 Dataset:2259 MyDataset
08:27:24 Dataset:3553 Orphaned dataset 1
08:27:24 Project:1101 Project 1
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08:27:24 Dataset:7959 MyDataset
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08:27:24 Dataset:3610 MyDataset
08:27:24 Dataset:409 MyDataset
08:27:24 Dataset:6765 MyDataset
08:27:24 Dataset:9109 MyDataset
08:27:24 Project:7301 Project 1
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08:27:24 Dataset:808 MyDataset
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08:27:24 Dataset:1360 MyDataset
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08:27:24 Dataset:8953 Orphaned dataset 1
08:27:24 Dataset:2113 FileAnnotationDelete
08:27:24 Dataset:2008 MyDataset
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08:27:24 Dataset:4915 MyDataset
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08:27:24 Dataset:8454 Orphaned dataset 2
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08:27:24 Dataset:8863 FileAnnotationDelete
08:27:24 Dataset:7358 MyDataset
08:27:24 Dataset:2904 Orphaned dataset 2
08:27:24 Project:6901 Project 1
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08:27:24 Dataset:5154 Orphaned dataset 2
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08:27:24 Dataset:4109 MyDataset
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08:27:24 Project:3001 Project 1
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08:27:24 Dataset:5259 MyDataset
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08:27:24 Dataset:2553 Orphaned dataset 1
08:27:24 Dataset:2915 MyDataset
08:27:24 Dataset:8904 Orphaned dataset 2
08:27:24 Dataset:2816 MyDataset
08:27:24 Dataset:4613 FileAnnotationDelete
08:27:24 Dataset:8812 New Dataset2
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08:27:24 Dataset:3216 MyDataset
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08:27:24 Dataset:8716 MyDataset
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08:27:24 Dataset:5862 New Dataset2
08:27:24 Dataset:5810 MyDataset
08:27:24 Dataset:3353 Orphaned dataset 1
08:27:24 Dataset:4561 New Dataset
08:27:24 Dataset:3066 MyDataset
08:27:24 Dataset:509 MyDataset
08:27:24 Project:4751 Project 1
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08:27:24 Dataset:4366 MyDataset
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08:27:24 Dataset:5458 MyDataset
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08:27:24 Dataset:7108 MyDataset
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08:27:24 Dataset:3253 Orphaned dataset 1
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08:27:24 Dataset:6358 MyDataset
08:27:24 Dataset:8712 New Dataset2
08:27:24 Dataset:2753 Orphaned dataset 1
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08:27:24 Project:8401 Project 1
08:27:24 Dataset:4166 MyDataset
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08:27:24 Dataset:2604 Orphaned dataset 2
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08:27:24 Project:1601 Project 1
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08:27:24 Project:3151 Project 1
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08:27:24 Dataset:8813 FileAnnotationDelete
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08:27:24 Dataset:1766 MyDataset
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08:27:24 Dataset:1703 Orphaned dataset 1
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08:27:24 Project:1151 Project 1
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08:27:24 Dataset:6213 FileAnnotationDelete
08:27:24 Dataset:7308 MyDataset
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08:27:24 Dataset:6911 New Dataset
08:27:24 Dataset:8162 New Dataset2
08:27:24 Project:6651 Project 1
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08:27:24 Dataset:8715 MyDataset
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08:27:24 Dataset:3415 MyDataset
08:27:24 Dataset:3713 FileAnnotationDelete
08:27:24 Dataset:8758 MyDataset
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08:27:24 Dataset:6904 Orphaned dataset 2
08:27:24 Dataset:3510 MyDataset
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08:27:24 Dataset:2204 Orphaned dataset 2
08:27:24 Project:1501 Project 1
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08:27:24 Dataset:4254 Orphaned dataset 2
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08:27:24 Dataset:3913 FileAnnotationDelete
08:27:24 Dataset:6113 FileAnnotationDelete
08:27:24 Dataset:2103 Orphaned dataset 1
08:27:24 Dataset:2208 MyDataset
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08:27:24 Dataset:6414 MyDataset
08:27:24 Dataset:6004 Orphaned dataset 2
08:27:24 Dataset:416 MyDataset
08:27:24 Project:5451 Project 1
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08:27:24 Dataset:4153 Orphaned dataset 1
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08:27:24 Dataset:8361 New Dataset
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08:27:24 Dataset:53 Orphaned dataset 1
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08:27:24 Dataset:6253 Orphaned dataset 1
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08:27:24 Dataset:3166 MyDataset
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08:27:24 Dataset:3113 FileAnnotationDelete
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08:27:24 Dataset:8561 New Dataset
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08:27:24 Dataset:8810 MyDataset
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08:27:24 Dataset:3458 MyDataset
08:27:24 Project:5301 Project 1
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08:27:24 Dataset:4754 Orphaned dataset 2
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08:27:24 Dataset:4304 Orphaned dataset 2
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08:27:24 Dataset:8154 Orphaned dataset 2
08:27:24 Dataset:1315 MyDataset
08:27:24 Dataset:1011 New Dataset
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08:27:24 Dataset:3 Orphaned dataset 1
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08:27:24 Dataset:6508 MyDataset
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08:27:24 Dataset:5658 MyDataset
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08:27:24 Dataset:2310 MyDataset
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08:27:24 Dataset:3803 Orphaned dataset 1
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08:27:24 Dataset:7054 Orphaned dataset 2
08:27:24 Dataset:3759 MyDataset
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08:27:24 Project:5751 Project 1
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08:27:24 Project:1301 Project 1
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08:27:24 Dataset:3516 MyDataset
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08:27:24 Dataset:7463 FileAnnotationDelete
08:27:24 Project:6801 Project 1
08:27:24 Dataset:7758 MyDataset
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08:27:24 Dataset:609 MyDataset
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08:27:24 Dataset:761 New Dataset
08:27:24 Dataset:8954 Orphaned dataset 2
08:27:24 Dataset:2053 Orphaned dataset 1
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08:27:24 Dataset:2716 MyDataset
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08:27:24 Dataset:7804 Orphaned dataset 2
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08:27:24 Dataset:6263 FileAnnotationDelete
08:27:24 Project:4251 Project 1
08:27:24 Dataset:7753 Orphaned dataset 1
08:27:24 Dataset:3165 MyDataset
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08:27:24 Dataset:916 MyDataset
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08:27:24 Dataset:1663 FileAnnotationDelete
08:27:24 Project:9201 Project 1
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08:27:24 Dataset:6312 New Dataset2
08:27:24 Dataset:4964 MyDataset
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08:27:24 Project:7351 Project 1
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08:27:24 Dataset:911 New Dataset
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08:27:24 Dataset:1553 Orphaned dataset 1
08:27:24 Dataset:710 MyDataset
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08:27:24 Dataset:959 MyDataset
08:27:24 Dataset:6712 New Dataset2
08:27:24 Dataset:464 MyDataset
08:27:24 Dataset:6554 Orphaned dataset 2
08:27:24 Project:3101 Project 1
08:27:24 Dataset:811 New Dataset
08:27:24 Dataset:964 MyDataset
08:27:24 Dataset:4011 New Dataset
08:27:24 Dataset:5761 New Dataset
08:27:24 Dataset:4753 Orphaned dataset 1
08:27:24 Project:5201 Project 1
08:27:24 Dataset:7064 MyDataset
08:27:24 Dataset:2365 MyDataset
08:27:24 Dataset:9013 FileAnnotationDelete
08:27:24 Dataset:1153 Orphaned dataset 1
08:27:24 Dataset:7453 Orphaned dataset 1
08:27:24 Dataset:809 MyDataset
08:27:24 Dataset:6165 MyDataset
08:27:24 Dataset:5065 MyDataset
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08:27:24 Dataset:7211 New Dataset
08:27:24 Dataset:1863 FileAnnotationDelete
08:27:24 Dataset:3954 Orphaned dataset 2
08:27:24 Dataset:8258 MyDataset
08:27:24 Dataset:2504 Orphaned dataset 2
08:27:24 Dataset:4764 MyDataset
08:27:24 Dataset:6816 MyDataset
08:27:24 Size:0
08:27:24 512 512
08:27:25 9
08:27:25 9
08:27:25 1
08:27:26 Logged in as ladmin_user
08:27:27 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
08:27:27 Added 'ladmin_user's tag' to dataset MyDataset as admin.
08:27:27 Finished: SUCCESS