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#14 368.1 Progress (4): 865/914 kB | 249/591 kB | 224/282 kB | 12/121 kB
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#14 368.1 Progress (4): 873/914 kB | 249/591 kB | 224/282 kB | 12/121 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar (914 kB at 3.7 MB/s)
#14 368.1 Progress (4): 528/591 kB | 282 kB | 121 kB | 27 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar
#14 368.1 Progress (4): 532/591 kB | 282 kB | 121 kB | 27 kB
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#14 368.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
#14 368.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.jar (121 kB at 473 kB/s)
#14 368.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 368.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 104 kB/s)
#14 368.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 368.1 Progress (2): 591 kB | 4.1/50 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar (591 kB at 2.2 MB/s)
#14 368.2 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar
#14 368.2 Progress (2): 50 kB | 4.1/232 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar (50 kB at 181 kB/s)
#14 368.2 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar
#14 368.2 Progress (3): 232 kB | 60 kB | 4.1/90 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar (60 kB at 214 kB/s)
#14 368.2 Progress (3): 232 kB | 90 kB | 77/428 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.
#14 370.0 [output clipped, log limit 2MiB reached]
#14 458.7 SLF4J: No SLF4J providers were found.
#14 458.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 458.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 469.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.670 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.530 [echo] isSnapshot = true
#16 3.640
#16 3.640 copy-jars:
#16 3.640
#16 3.640 deps-formats-api:
#16 3.722 [echo] isSnapshot = true
#16 3.777
#16 3.777 install-pom:
#16 3.962 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.971 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.975 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.977
#16 3.977 jar-formats-api:
#16 4.087 [echo] isSnapshot = true
#16 4.270
#16 4.270 init-title:
#16 4.270 [echo] ----------=========== formats-api ===========----------
#16 4.271
#16 4.271 init-timestamp:
#16 4.277
#16 4.277 init:
#16 4.277
#16 4.277 copy-resources:
#16 4.278 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.291 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.293
#16 4.293 compile:
#16 4.475 [resolver:resolve] Resolving artifacts
#16 4.502 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.779 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.480 [javac] import loci.common.ReflectedUniverse;
#16 5.480 [javac] ^
#16 5.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.680 [javac] int currentIndex = r.getCoreIndex();
#16 5.680 [javac] ^
#16 5.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.680 [javac] r.setCoreIndex(coreIndex);
#16 5.680 [javac] ^
#16 5.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.681 [javac] r.setCoreIndex(currentIndex);
#16 5.681 [javac] ^
#16 5.881 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.881 [javac] public void setCoreIndex(int no) {
#16 5.881 [javac] ^
#16 5.881 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.881 [javac] public int getCoreIndex() {
#16 5.881 [javac] ^
#16 5.881 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.881 [javac] public int coreIndexToSeries(int index)
#16 5.881 [javac] ^
#16 5.882 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.882 [javac] public int seriesToCoreIndex(int series)
#16 5.882 [javac] ^
#16 5.882 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.882 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.882 [javac] ^
#16 5.983 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.983 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.983 [javac] ^
#16 5.983 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.983 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.983 [javac] ^
#16 5.983 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.983 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.983 [javac] ^
#16 5.983 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.983 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.983 [javac] ^
#16 6.084 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.084 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.084 [javac] ^
#16 6.084 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.084 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.084 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.185 [javac] public void setCoreIndex(int no) {
#16 6.185 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.185 [javac] public int getCoreIndex() {
#16 6.185 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.185 [javac] public int coreIndexToSeries(int index) {
#16 6.185 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.185 [javac] public int seriesToCoreIndex(int series) {
#16 6.185 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.185 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.185 [javac] ^
#16 6.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.185 [javac] return getReader().getCoreMetadataList();
#16 6.185 [javac] ^
#16 6.186 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.186 [javac] return getReader().getCoreIndex();
#16 6.186 [javac] ^
#16 6.186 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.186 [javac] getReader().setCoreIndex(no);
#16 6.186 [javac] ^
#16 6.186 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.186 [javac] return getReader().seriesToCoreIndex(series);
#16 6.186 [javac] ^
#16 6.186 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.186 [javac] return getReader().coreIndexToSeries(index);
#16 6.186 [javac] ^
#16 6.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.287 [javac] public void setCoreIndex(int no) {
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.287 [javac] public int getCoreIndex() {
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.287 [javac] public int coreIndexToSeries(int index) {
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.287 [javac] public int seriesToCoreIndex(int series) {
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.287 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.287 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.287 [javac] return reader.getCoreIndex();
#16 6.287 [javac] ^
#16 6.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.287 [javac] reader.setCoreIndex(no);
#16 6.287 [javac] ^
#16 6.288 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.288 [javac] return reader.seriesToCoreIndex(series);
#16 6.288 [javac] ^
#16 6.288 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.288 [javac] return reader.coreIndexToSeries(index);
#16 6.288 [javac] ^
#16 6.477 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.477 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.477 [javac] 36 warnings
#16 6.478
#16 6.478 formats-api.jar:
#16 6.478 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.503 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.537 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.541 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.543 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.544 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.546 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.548
#16 6.548 deps-turbojpeg:
#16 6.548
#16 6.548 jar-turbojpeg:
#16 6.654 [echo] isSnapshot = true
#16 6.824
#16 6.824 init-title:
#16 6.824 [echo] ----------=========== turbojpeg ===========----------
#16 6.824
#16 6.824 init-timestamp:
#16 6.824
#16 6.824 init:
#16 6.824
#16 6.824 copy-resources:
#16 6.825 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.826
#16 6.826 compile:
#16 6.836 [resolver:resolve] Resolving artifacts
#16 6.841 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.043 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.743 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.743 [javac] protected void finalize() throws Throwable {
#16 7.743 [javac] ^
#16 7.743 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.743 [javac] super.finalize();
#16 7.743 [javac] ^
#16 7.743 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.743 [javac] protected void finalize() throws Throwable {
#16 7.743 [javac] ^
#16 7.743 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.743 [javac] super.finalize();
#16 7.743 [javac] ^
#16 7.743 [javac] 5 warnings
#16 7.744
#16 7.744 jar:
#16 7.749 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.934 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 7.941 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 7.944 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 7.946 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 7.950 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.951
#16 7.951 deps-formats-bsd:
#16 7.951
#16 7.951 jar-formats-bsd:
#16 8.051 [echo] isSnapshot = true
#16 8.203
#16 8.203 init-title:
#16 8.203 [echo] ----------=========== formats-bsd ===========----------
#16 8.203
#16 8.203 init-timestamp:
#16 8.204
#16 8.204 init:
#16 8.204
#16 8.204 copy-resources:
#16 8.204 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.207 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.208
#16 8.208 compile:
#16 8.424 [resolver:resolve] Resolving artifacts
#16 8.453 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.763 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.764 [javac] import loci.common.ReflectedUniverse;
#16 9.764 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] core.size() != reader.getCoreMetadataList().size())
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] int n = reader.getCoreMetadataList().size();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.16 [javac] reader.setCoreIndex(coreIndex);
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] int n = reader.getCoreMetadataList().size();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] int n = reader.getCoreMetadataList().size();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.16 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] int n = reader.getCoreMetadataList().size();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.16 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.16 [javac] int n = reader.getCoreMetadataList().size();
#16 10.16 [javac] ^
#16 10.16 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.17 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.17 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.17 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.17 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.17 [javac] ^
#16 10.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.37 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.37 [javac] ^
#16 10.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.47 [javac] BitWriter out = new BitWriter();
#16 10.47 [javac] ^
#16 10.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.47 [javac] BitWriter out = new BitWriter();
#16 10.47 [javac] ^
#16 10.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.57 [javac] return new Double(v);
#16 10.57 [javac] ^
#16 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.27 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.27 [javac] ^
#16 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.27 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.27 [javac] ^
#16 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.27 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.27 [javac] ^
#16 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.37 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.37 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.57 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.57 [javac] ^
#16 11.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.67 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.67 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.77 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.77 [javac] protected ReflectedUniverse r;
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.77 [javac] r = new ReflectedUniverse();
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1034: warning: [deprecation] NM in UNITS has been deprecated
#16 11.77 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1066: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1079: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1080: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1099: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1103: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1109: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1157: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.77 [javac] ^
#16 11.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1161: warning: [deprecation] MM in UNITS has been deprecated
#16 11.77 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.77 [javac] ^
#16 11.87 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.87 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.87 [javac] ^
#16 11.87 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.87 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.87 [javac] ^
#16 11.87 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.87 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.87 [javac] ^
#16 11.87 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.87 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.87 [javac] ^
#16 11.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.97 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.97 [javac] ^
#16 11.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.97 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.97 [javac] ^
#16 11.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.97 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.97 [javac] ^
#16 11.97 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.97 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.97 [javac] 50 warnings
#16 11.98
#16 11.98 formats-bsd.jar:
#16 11.99 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.10 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 12.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 12.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 12.11 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.11 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.11
#16 12.11 deps-formats-gpl:
#16 12.11
#16 12.11 jar-formats-gpl:
#16 12.24 [echo] isSnapshot = true
#16 12.42
#16 12.42 init-title:
#16 12.42 [echo] ----------=========== formats-gpl ===========----------
#16 12.42
#16 12.42 init-timestamp:
#16 12.42
#16 12.42 init:
#16 12.42
#16 12.42 copy-resources:
#16 12.42 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.42 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.42
#16 12.42 compile:
#16 12.69 [resolver:resolve] Resolving artifacts
#16 12.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.17 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.17 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.22 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.22 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.24 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.55 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.75 [javac] import loci.formats.codec.BitWriter;
#16 14.75 [javac] ^
#16 14.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.75 [javac] import loci.formats.codec.BitWriter;
#16 14.75 [javac] ^
#16 16.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.75 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.75 [javac] ^
#16 16.75 [javac] cast to Object for a varargs call
#16 16.75 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.85 [javac] BitWriter bits = null;
#16 16.85 [javac] ^
#16 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.85 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.85 [javac] ^
#16 17.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.25 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.25 [javac] ^
#16 17.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.65 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.65 [javac] ^
#16 17.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.65 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.65 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.95 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.95 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.95 [javac] String groupName = group.getName();
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.95 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.95 [javac] String attributeName = attribute.getName();
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.95 [javac] String variableName = variable.getName();
#16 17.95 [javac] ^
#16 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.95 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.95 [javac] ^
#16 17.95 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.95 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.95 [javac] 16 warnings
#16 17.99
#16 17.99 formats-gpl.jar:
#16 17.99 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 18.13 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 18.13 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 18.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 18.13 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.14 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 18.14
#16 18.14 deps-bio-formats-plugins:
#16 18.14
#16 18.14 jar-bio-formats-plugins:
#16 18.23 [echo] isSnapshot = true
#16 18.39
#16 18.39 init-title:
#16 18.39 [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.39
#16 18.39 init-timestamp:
#16 18.39
#16 18.39 init:
#16 18.39
#16 18.39 copy-resources:
#16 18.39 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.39 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.40
#16 18.40 compile:
#16 18.65 [resolver:resolve] Resolving artifacts
#16 18.66 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.97 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.87 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.87 [javac] import loci.common.ReflectedUniverse;
#16 19.87 [javac] ^
#16 19.87 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.87 [javac] import loci.common.ReflectedUniverse;
#16 19.87 [javac] ^
#16 20.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 20.37 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 20.37 [javac] ^
#16 20.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.47 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.47 [javac] ^
#16 20.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.47 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.47 [javac] ^
#16 20.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.57 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.57 [javac] ^
#16 20.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.57 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.57 [javac] ^
#16 21.07 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 21.07 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 21.07 [javac] 8 warnings
#16 21.09
#16 21.09 bio-formats-plugins.jar:
#16 21.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 21.13 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 21.13 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 21.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 21.13 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 21.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 21.14
#16 21.14 deps-bio-formats-tools:
#16 21.14
#16 21.14 jar-bio-formats-tools:
#16 21.26 [echo] isSnapshot = true
#16 21.41
#16 21.41 init-title:
#16 21.41 [echo] ----------=========== bio-formats-tools ===========----------
#16 21.41
#16 21.41 init-timestamp:
#16 21.41
#16 21.41 init:
#16 21.41
#16 21.41 copy-resources:
#16 21.41 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.41
#16 21.41 compile:
#16 21.67 [resolver:resolve] Resolving artifacts
#16 21.68 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.98 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.98 [javac] 1 warning
#16 23.02
#16 23.02 bio-formats-tools.jar:
#16 23.02 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 23.03 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 23.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 23.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 23.09 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.09 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 23.09
#16 23.09 deps-tests:
#16 23.09
#16 23.09 jar-tests:
#16 23.19 [echo] isSnapshot = true
#16 23.35
#16 23.35 init-title:
#16 23.35 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.35
#16 23.35 init-timestamp:
#16 23.35
#16 23.35 init:
#16 23.35
#16 23.35 copy-resources:
#16 23.35 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.35
#16 23.35 compile:
#16 23.68 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.77 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.78 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.20 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.64 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.66 [resolver:resolve] Resolving artifacts
#16 24.67 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.71 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.72 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.13 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.53 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.54 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.85 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.95 [javac] int index = unflattenedReader.getCoreIndex();
#16 26.95 [javac] ^
#16 26.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.95 [javac] reader.setCoreIndex(index);
#16 26.95 [javac] ^
#16 27.15 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.15 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.15 [javac] ^
#16 27.15 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.15 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.15 [javac] ^
#16 27.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.45 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.45 [javac] ^
#16 27.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.45 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.45 [javac] ^
#16 27.45 [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.45 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.45 [javac] 7 warnings
#16 27.46
#16 27.46 tests.jar:
#16 27.46 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.48 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 27.48 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 27.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 27.49 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.49 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.49
#16 27.49 jars:
#16 27.49
#16 27.49 copy-jars:
#16 27.49
#16 27.49 deps-formats-api:
#16 27.54 [echo] isSnapshot = true
#16 27.59
#16 27.59 install-pom:
#16 27.75 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 27.76 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.76 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.76
#16 27.76 jar-formats-api:
#16 27.85 [echo] isSnapshot = true
#16 28.03
#16 28.03 init-title:
#16 28.03 [echo] ----------=========== formats-api ===========----------
#16 28.03
#16 28.03 init-timestamp:
#16 28.04
#16 28.04 init:
#16 28.04
#16 28.04 copy-resources:
#16 28.04
#16 28.04 compile:
#16 28.17 [resolver:resolve] Resolving artifacts
#16 28.18
#16 28.18 formats-api.jar:
#16 28.20 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 28.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 28.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 28.20 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.21 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 28.21
#16 28.21 deps-turbojpeg:
#16 28.21
#16 28.21 jar-turbojpeg:
#16 28.29 [echo] isSnapshot = true
#16 28.43
#16 28.43 init-title:
#16 28.43 [echo] ----------=========== turbojpeg ===========----------
#16 28.43
#16 28.43 init-timestamp:
#16 28.43
#16 28.43 init:
#16 28.43
#16 28.43 copy-resources:
#16 28.43
#16 28.43 compile:
#16 28.44 [resolver:resolve] Resolving artifacts
#16 28.44
#16 28.44 jar:
#16 28.45 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 28.46 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 28.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 28.46 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.46 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 28.46
#16 28.46 deps-formats-bsd:
#16 28.46
#16 28.46 jar-formats-bsd:
#16 28.54 [echo] isSnapshot = true
#16 28.69
#16 28.69 init-title:
#16 28.69 [echo] ----------=========== formats-bsd ===========----------
#16 28.69
#16 28.69 init-timestamp:
#16 28.69
#16 28.69 init:
#16 28.69
#16 28.69 copy-resources:
#16 28.69
#16 28.69 compile:
#16 28.89 [resolver:resolve] Resolving artifacts
#16 28.91
#16 28.91 formats-bsd.jar:
#16 28.95 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 28.95 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 28.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 28.95 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.96 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.96
#16 28.96 deps-formats-gpl:
#16 28.96
#16 28.96 jar-formats-gpl:
#16 29.05 [echo] isSnapshot = true
#16 29.20
#16 29.20 init-title:
#16 29.20 [echo] ----------=========== formats-gpl ===========----------
#16 29.20
#16 29.20 init-timestamp:
#16 29.20
#16 29.20 init:
#16 29.20
#16 29.20 copy-resources:
#16 29.20
#16 29.20 compile:
#16 29.44 [resolver:resolve] Resolving artifacts
#16 29.46
#16 29.46 formats-gpl.jar:
#16 29.50 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 29.51 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.51 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 29.51
#16 29.51 deps-bio-formats-plugins:
#16 29.51
#16 29.51 jar-bio-formats-plugins:
#16 29.60 [echo] isSnapshot = true
#16 29.75
#16 29.75 init-title:
#16 29.75 [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.75
#16 29.75 init-timestamp:
#16 29.75
#16 29.75 init:
#16 29.75
#16 29.75 copy-resources:
#16 29.75
#16 29.75 compile:
#16 30.00 [resolver:resolve] Resolving artifacts
#16 30.01
#16 30.01 bio-formats-plugins.jar:
#16 30.03 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 30.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 30.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 30.03 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 30.04 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 30.04
#16 30.04 deps-bio-formats-tools:
#16 30.04
#16 30.04 jar-bio-formats-tools:
#16 30.13 [echo] isSnapshot = true
#16 30.28
#16 30.28 init-title:
#16 30.28 [echo] ----------=========== bio-formats-tools ===========----------
#16 30.28
#16 30.28 init-timestamp:
#16 30.28
#16 30.28 init:
#16 30.28
#16 30.28 copy-resources:
#16 30.28
#16 30.28 compile:
#16 30.55 [resolver:resolve] Resolving artifacts
#16 30.56
#16 30.56 bio-formats-tools.jar:
#16 30.57 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 30.57 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 30.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 30.57 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 30.58 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 30.58
#16 30.58 deps-tests:
#16 30.58
#16 30.58 jar-tests:
#16 30.67 [echo] isSnapshot = true
#16 30.84
#16 30.84 init-title:
#16 30.84 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 30.84
#16 30.84 init-timestamp:
#16 30.84
#16 30.84 init:
#16 30.84
#16 30.84 copy-resources:
#16 30.84
#16 30.84 compile:
#16 31.12 [resolver:resolve] Resolving artifacts
#16 31.13
#16 31.13 tests.jar:
#16 31.14 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 31.14 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 31.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 31.15 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 31.15 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 31.15
#16 31.15 jars:
#16 31.15
#16 31.15 tools:
#16 31.15 [echo] ----------=========== bioformats_package ===========----------
#16 31.24 [echo] isSnapshot = true
#16 31.39
#16 31.39 init-timestamp:
#16 31.39
#16 31.39 bundle:
#16 31.64 [resolver:resolve] Resolving artifacts
#16 31.65 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.69 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.80 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.82 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.16 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.21 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.23 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.32 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.10 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.23 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.39 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.42 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.50 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.53 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.54 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.58 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.04 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.06 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.09 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.16 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.27 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.29 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.30 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.31 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.55 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.63 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.69 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.78 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.94 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.95 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.39 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.40 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.52 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.57 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.73 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.91 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.93 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.94 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.99 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.03 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.43 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.54 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.93 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 42.68 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.31 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 43.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 43.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 43.36 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 43.36 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 43.37
#16 43.37 BUILD SUCCESSFUL
#16 43.37 Total time: 42 seconds
#16 DONE 45.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 5.2s done
#18 writing image sha256:008d0021ede6ee754910aa404190df9df17d2209a8a0767f6970ec51841ff358 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 5.2s
[33m1 warning found (use --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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