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#14 1154.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.3.9/maven-model-3.3.9.jar (164 kB at 891 kB/s)
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#14 1154.8 Progress (2): 614 kB | 560/638 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.jar
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.3.9/maven-model-builder-3.3.9.jar
#14 1154.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.jar (27 kB at 131 kB/s)
#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar
#14 1154.9 Progress (3): 15 kB | 55 kB | 4.1/47 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.3.9/maven-aether-provider-3.3.9.jar
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/1.0.2.v20150114/aether-spi-1.0.2.v20150114.jar
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#14 1154.9 Progress (3): 177 kB | 29/67 kB | 0/2.3 MB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.jar
#14 1154.9 Progress (3): 67 kB | 0.1/2.3 MB | 31 kB
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#14 1154.9 Progress (3): 0.3/2.3 MB | 31 kB | 41/173 kB
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#14 1154.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/1.0.2.v20150114/aether-spi-1.0.2.v20150114.jar (31 kB at 128 kB/s)
#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.jar
#14 1154.9 Progress (2): 0.3/2.3 MB | 45/173 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/1.0.2.v20150114/aether-impl-1.0.2.v20150114.jar (173 kB at 673 kB/s)
#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar
#14 1154.9 Progress (4): 0.6/2.3 MB | 136 kB | 82/147 kB | 65/205 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar
#14 1154.9 Progress (3): 0.9/2.3 MB | 147 kB | 205 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar
#14 1154.9 Progress (3): 1.1/2.3 MB | 205 kB | 45 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar
#14 1154.9 Progress (3): 1.2/2.3 MB | 45 kB | 4.1/5.8 kB
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#14 1154.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar
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#14 1154.9 Progress (3): 1.5/2.3 MB | 82/378 kB | 4.1/424 kB
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Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
#14 1154.9 Progress (3): 1.5/2.3 MB | 86/378 kB | 8.2/424 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar (2.5 kB at 8.2 kB/s)
#14 1155.0 Progress (4): 1.9/2.3 MB | 344/378 kB | 266/424 kB | 4.5 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
#14 1155.0 Progress (4): 1.9/2.3 MB | 344/378 kB | 266/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar (4.5 kB at 14 kB/s)
#14 1155.0 Progress (3): 2.1/2.3 MB | 378 kB | 424 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
#14 1155.0 Progress (3): 2.1/2.3 MB | 378 kB | 424 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar (378 kB at 1.2 MB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar
#14 1155.0 Progress (3): 2.2/2.3 MB | 424 kB | 62 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar (424 kB at 1.3 MB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
#14 1155.0 Progress (3): 2.3 MB | 62 kB | 4.1/53 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar (62 kB at 188 kB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/3.5.2/maven-archiver-3.5.2.jar
#14 1155.0 Progress (3): 2.3 MB | 53 kB | 4.1/435 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar (2.3 MB at 6.7 MB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.3.3/maven-shared-utils-3.3.3.jar
#14 1155.0 Progress (2): 53 kB | 82/435 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar (53 kB at 154 kB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar
#14 1155.0 Progress (2): 209/435 kB | 68/290 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/3.5.2/maven-archiver-3.5.2.jar (26 kB at 72 kB/s)
#14 1155.0 Progress (4): 435 kB | 290 kB | 154 kB | 135/632 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
#14 1155.0 Progress (4): 435 kB | 290 kB | 154 kB | 139/632 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar (290 kB at 793 kB/s)
#14 1155.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar
#14 1155.0 Progress (3): 435 kB | 154 kB | 274/632 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar (435 kB at 1.2 MB/s)
#14 1155.0 Progress (2): 154 kB | 315/632 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/tukaani/xz/1.9/xz-1.9.jar
#14 1155.0 Progress (2): 154 kB | 319/632 kB
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#14 1155.0 Progress (1): 475/632 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
#14 1155.0 Progress (1): 479/632 kB
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Progress (4): 632 kB | 163/195 kB | 61/76 kB | 49/116 kB
Progress (4): 632 kB | 163/195 kB | 66/76 kB | 49/116 kB
Pro
#14 1155.0 [output clipped, log limit 2MiB reached]
#14 1253.9 SLF4J: No SLF4J providers were found.
#14 1253.9 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 1253.9 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 1267.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.459 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.585 [echo] isSnapshot = true
#16 3.687
#16 3.687 copy-jars:
#16 3.687
#16 3.687 deps-formats-api:
#16 3.765 [echo] isSnapshot = true
#16 3.820
#16 3.820 install-pom:
#16 3.988 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.998 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.001 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 4.003
#16 4.003 jar-formats-api:
#16 4.110 [echo] isSnapshot = true
#16 4.266
#16 4.266 init-title:
#16 4.267 [echo] ----------=========== formats-api ===========----------
#16 4.267
#16 4.267 init-timestamp:
#16 4.273
#16 4.273 init:
#16 4.273
#16 4.273 copy-resources:
#16 4.275 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.287 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.290
#16 4.290 compile:
#16 4.470 [resolver:resolve] Resolving artifacts
#16 4.496 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.754 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.455 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.455 [javac] import loci.common.ReflectedUniverse;
#16 5.455 [javac] ^
#16 5.655 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.655 [javac] int currentIndex = r.getCoreIndex();
#16 5.655 [javac] ^
#16 5.656 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.656 [javac] r.setCoreIndex(coreIndex);
#16 5.656 [javac] ^
#16 5.656 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.656 [javac] r.setCoreIndex(currentIndex);
#16 5.656 [javac] ^
#16 5.856 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.856 [javac] public void setCoreIndex(int no) {
#16 5.856 [javac] ^
#16 5.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.857 [javac] public int getCoreIndex() {
#16 5.857 [javac] ^
#16 5.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.857 [javac] public int coreIndexToSeries(int index)
#16 5.857 [javac] ^
#16 5.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.857 [javac] public int seriesToCoreIndex(int series)
#16 5.857 [javac] ^
#16 5.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.857 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.857 [javac] ^
#16 5.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.958 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.958 [javac] ^
#16 5.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.958 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.958 [javac] ^
#16 5.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.958 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.958 [javac] ^
#16 5.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.959 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.959 [javac] ^
#16 6.059 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.059 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.059 [javac] ^
#16 6.059 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.059 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 6.059 [javac] ^
#16 6.160 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.160 [javac] public void setCoreIndex(int no) {
#16 6.160 [javac] ^
#16 6.160 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.160 [javac] public int getCoreIndex() {
#16 6.160 [javac] ^
#16 6.160 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.160 [javac] public int coreIndexToSeries(int index) {
#16 6.160 [javac] ^
#16 6.161 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.161 [javac] public int seriesToCoreIndex(int series) {
#16 6.161 [javac] ^
#16 6.161 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.161 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.161 [javac] ^
#16 6.161 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.161 [javac] return getReader().getCoreMetadataList();
#16 6.161 [javac] ^
#16 6.161 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.161 [javac] return getReader().getCoreIndex();
#16 6.161 [javac] ^
#16 6.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.162 [javac] getReader().setCoreIndex(no);
#16 6.162 [javac] ^
#16 6.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.162 [javac] return getReader().seriesToCoreIndex(series);
#16 6.162 [javac] ^
#16 6.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.162 [javac] return getReader().coreIndexToSeries(index);
#16 6.162 [javac] ^
#16 6.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.162 [javac] public void setCoreIndex(int no) {
#16 6.162 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.163 [javac] public int getCoreIndex() {
#16 6.163 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.163 [javac] public int coreIndexToSeries(int index) {
#16 6.163 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.163 [javac] public int seriesToCoreIndex(int series) {
#16 6.163 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.163 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.163 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.163 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.163 [javac] ^
#16 6.163 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.164 [javac] return reader.getCoreIndex();
#16 6.164 [javac] ^
#16 6.164 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.164 [javac] reader.setCoreIndex(no);
#16 6.164 [javac] ^
#16 6.164 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.164 [javac] return reader.seriesToCoreIndex(series);
#16 6.164 [javac] ^
#16 6.164 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.164 [javac] return reader.coreIndexToSeries(index);
#16 6.164 [javac] ^
#16 6.365 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.365 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.365 [javac] 36 warnings
#16 6.397
#16 6.397 formats-api.jar:
#16 6.398 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.421 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.451 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.455 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.457 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.458 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.460 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.461
#16 6.461 deps-turbojpeg:
#16 6.461
#16 6.461 jar-turbojpeg:
#16 6.555 [echo] isSnapshot = true
#16 6.698
#16 6.698 init-title:
#16 6.698 [echo] ----------=========== turbojpeg ===========----------
#16 6.698
#16 6.698 init-timestamp:
#16 6.699
#16 6.699 init:
#16 6.699
#16 6.699 copy-resources:
#16 6.699 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.700
#16 6.700 compile:
#16 6.709 [resolver:resolve] Resolving artifacts
#16 6.712 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.915 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.593 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.593 [javac] protected void finalize() throws Throwable {
#16 7.594 [javac] ^
#16 7.594 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.594 [javac] super.finalize();
#16 7.594 [javac] ^
#16 7.594 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.594 [javac] protected void finalize() throws Throwable {
#16 7.594 [javac] ^
#16 7.594 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.594 [javac] super.finalize();
#16 7.594 [javac] ^
#16 7.594 [javac] 5 warnings
#16 7.594
#16 7.594 jar:
#16 7.599 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.782 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 7.789 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 7.791 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 7.793 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 7.797 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.798
#16 7.798 deps-formats-bsd:
#16 7.798
#16 7.798 jar-formats-bsd:
#16 7.914 [echo] isSnapshot = true
#16 8.050
#16 8.050 init-title:
#16 8.050 [echo] ----------=========== formats-bsd ===========----------
#16 8.050
#16 8.050 init-timestamp:
#16 8.051
#16 8.051 init:
#16 8.051
#16 8.051 copy-resources:
#16 8.051 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.054 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.055
#16 8.055 compile:
#16 8.260 [resolver:resolve] Resolving artifacts
#16 8.286 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.494 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.595 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.595 [javac] import loci.common.ReflectedUniverse;
#16 9.595 [javac] ^
#16 9.996 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.996 [javac] core.size() != reader.getCoreMetadataList().size())
#16 9.996 [javac] ^
#16 9.996 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.996 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 9.996 [javac] ^
#16 9.996 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.996 [javac] int n = reader.getCoreMetadataList().size();
#16 9.996 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.997 [javac] reader.setCoreIndex(coreIndex);
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.997 [javac] int n = reader.getCoreMetadataList().size();
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.997 [javac] int n = reader.getCoreMetadataList().size();
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.997 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.997 [javac] int n = reader.getCoreMetadataList().size();
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.997 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.997 [javac] int n = reader.getCoreMetadataList().size();
#16 9.997 [javac] ^
#16 9.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.997 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 9.998 [javac] ^
#16 9.998 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.998 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.998 [javac] ^
#16 9.998 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.998 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.998 [javac] ^
#16 9.998 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.998 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 9.998 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.10 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 10.10 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.10 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.10 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.10 [javac] ^
#16 10.20 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.20 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.20 [javac] ^
#16 10.30 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.30 [javac] BitWriter out = new BitWriter();
#16 10.30 [javac] ^
#16 10.30 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.30 [javac] BitWriter out = new BitWriter();
#16 10.30 [javac] ^
#16 10.40 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.40 [javac] return new Double(v);
#16 10.40 [javac] ^
#16 11.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.10 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.10 [javac] ^
#16 11.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.10 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.10 [javac] ^
#16 11.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.10 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.10 [javac] ^
#16 11.30 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.30 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.30 [javac] ^
#16 11.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.50 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.50 [javac] ^
#16 11.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.50 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.50 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.70 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.70 [javac] protected ReflectedUniverse r;
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.70 [javac] r = new ReflectedUniverse();
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1034: warning: [deprecation] NM in UNITS has been deprecated
#16 11.70 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1066: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1079: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1080: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1099: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1103: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1109: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1157: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.70 [javac] ^
#16 11.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1161: warning: [deprecation] MM in UNITS has been deprecated
#16 11.70 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.70 [javac] ^
#16 11.81 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.81 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.81 [javac] ^
#16 11.81 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.81 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.81 [javac] ^
#16 11.81 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.81 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.81 [javac] ^
#16 11.81 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.81 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.81 [javac] ^
#16 11.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.91 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.91 [javac] ^
#16 11.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.91 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.91 [javac] ^
#16 11.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.91 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.91 [javac] ^
#16 11.91 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.91 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.91 [javac] 50 warnings
#16 11.93
#16 11.93 formats-bsd.jar:
#16 11.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.05 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 12.05 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 12.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 12.05 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.06 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.06
#16 12.06 deps-formats-gpl:
#16 12.06
#16 12.06 jar-formats-gpl:
#16 12.15 [echo] isSnapshot = true
#16 12.31
#16 12.31 init-title:
#16 12.31 [echo] ----------=========== formats-gpl ===========----------
#16 12.31
#16 12.31 init-timestamp:
#16 12.31
#16 12.31 init:
#16 12.31
#16 12.31 copy-resources:
#16 12.31 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.31 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.31
#16 12.31 compile:
#16 12.56 [resolver:resolve] Resolving artifacts
#16 12.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.02 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.02 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.06 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.06 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.07 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.28 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.48 [javac] import loci.formats.codec.BitWriter;
#16 14.48 [javac] ^
#16 14.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.58 [javac] import loci.formats.codec.BitWriter;
#16 14.58 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.58 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.58 [javac] ^
#16 16.58 [javac] cast to Object for a varargs call
#16 16.58 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.68 [javac] BitWriter bits = null;
#16 16.68 [javac] ^
#16 16.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.68 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.68 [javac] ^
#16 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.99 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.99 [javac] ^
#16 17.39 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.39 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.39 [javac] ^
#16 17.39 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.39 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.39 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.69 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.69 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.69 [javac] String groupName = group.getName();
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.69 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.69 [javac] String attributeName = attribute.getName();
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.69 [javac] String variableName = variable.getName();
#16 17.69 [javac] ^
#16 17.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.69 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.69 [javac] ^
#16 17.69 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.69 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.69 [javac] 16 warnings
#16 17.70
#16 17.70 formats-gpl.jar:
#16 17.71 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.84 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.84 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.85 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.85 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.85 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.85
#16 17.85 deps-bio-formats-plugins:
#16 17.85
#16 17.85 jar-bio-formats-plugins:
#16 17.95 [echo] isSnapshot = true
#16 18.09
#16 18.09 init-title:
#16 18.09 [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.09
#16 18.09 init-timestamp:
#16 18.09
#16 18.09 init:
#16 18.09
#16 18.09 copy-resources:
#16 18.09 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.09 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.10
#16 18.10 compile:
#16 18.35 [resolver:resolve] Resolving artifacts
#16 18.36 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.57 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.37 [javac] import loci.common.ReflectedUniverse;
#16 19.37 [javac] ^
#16 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.37 [javac] import loci.common.ReflectedUniverse;
#16 19.37 [javac] ^
#16 19.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.77 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.77 [javac] ^
#16 19.97 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.97 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.97 [javac] ^
#16 19.97 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.97 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.97 [javac] ^
#16 20.07 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.07 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.07 [javac] ^
#16 20.07 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.07 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.07 [javac] ^
#16 20.46 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.46 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.46 [javac] 8 warnings
#16 20.46
#16 20.46 bio-formats-plugins.jar:
#16 20.47 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.50 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.50 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.50 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.51 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.51
#16 20.51 deps-bio-formats-tools:
#16 20.51
#16 20.51 jar-bio-formats-tools:
#16 20.60 [echo] isSnapshot = true
#16 20.74
#16 20.74 init-title:
#16 20.74 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.74
#16 20.74 init-timestamp:
#16 20.74
#16 20.74 init:
#16 20.74
#16 20.74 copy-resources:
#16 20.74 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.74
#16 20.74 compile:
#16 20.97 [resolver:resolve] Resolving artifacts
#16 20.98 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.18 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.32 [javac] 1 warning
#16 22.32
#16 22.32 bio-formats-tools.jar:
#16 22.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.33 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.34 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.34 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.34
#16 22.34 deps-tests:
#16 22.34
#16 22.34 jar-tests:
#16 22.43 [echo] isSnapshot = true
#16 22.56
#16 22.56 init-title:
#16 22.56 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.56
#16 22.56 init-timestamp:
#16 22.56
#16 22.56 init:
#16 22.56
#16 22.56 copy-resources:
#16 22.56 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.56
#16 22.56 compile:
#16 22.86 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.94 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.96 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.38 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.87 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.88 [resolver:resolve] Resolving artifacts
#16 23.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.93 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.94 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.35 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.86 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.87 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.08 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.18 [javac] int index = unflattenedReader.getCoreIndex();
#16 26.18 [javac] ^
#16 26.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.18 [javac] reader.setCoreIndex(index);
#16 26.18 [javac] ^
#16 26.38 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.38 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.38 [javac] ^
#16 26.38 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.38 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.38 [javac] ^
#16 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.68 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.68 [javac] ^
#16 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.68 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.68 [javac] ^
#16 26.68 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.68 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.68 [javac] 7 warnings
#16 26.72
#16 26.72 tests.jar:
#16 26.73 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.74 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.74 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.75 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.75 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.75
#16 26.75 jars:
#16 26.75
#16 26.75 copy-jars:
#16 26.75
#16 26.75 deps-formats-api:
#16 26.80 [echo] isSnapshot = true
#16 26.84
#16 26.84 install-pom:
#16 26.96 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.97 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.97 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.97
#16 26.97 jar-formats-api:
#16 27.09 [echo] isSnapshot = true
#16 27.22
#16 27.22 init-title:
#16 27.22 [echo] ----------=========== formats-api ===========----------
#16 27.22
#16 27.22 init-timestamp:
#16 27.22
#16 27.22 init:
#16 27.22
#16 27.22 copy-resources:
#16 27.22
#16 27.22 compile:
#16 27.36 [resolver:resolve] Resolving artifacts
#16 27.37
#16 27.37 formats-api.jar:
#16 27.38 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.39 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.39 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.39
#16 27.39 deps-turbojpeg:
#16 27.39
#16 27.39 jar-turbojpeg:
#16 27.48 [echo] isSnapshot = true
#16 27.60
#16 27.60 init-title:
#16 27.60 [echo] ----------=========== turbojpeg ===========----------
#16 27.60
#16 27.60 init-timestamp:
#16 27.60
#16 27.60 init:
#16 27.60
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#16 27.61
#16 27.61 compile:
#16 27.61 [resolver:resolve] Resolving artifacts
#16 27.62
#16 27.62 jar:
#16 27.62 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.63 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.63 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.63
#16 27.63 deps-formats-bsd:
#16 27.63
#16 27.63 jar-formats-bsd:
#16 27.72 [echo] isSnapshot = true
#16 27.85
#16 27.85 init-title:
#16 27.85 [echo] ----------=========== formats-bsd ===========----------
#16 27.85
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#16 27.85
#16 27.85 init:
#16 27.85
#16 27.85 copy-resources:
#16 27.86
#16 27.86 compile:
#16 28.05 [resolver:resolve] Resolving artifacts
#16 28.07
#16 28.07 formats-bsd.jar:
#16 28.11 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 28.11 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.11 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.11
#16 28.11 deps-formats-gpl:
#16 28.11
#16 28.11 jar-formats-gpl:
#16 28.20 [echo] isSnapshot = true
#16 28.33
#16 28.33 init-title:
#16 28.33 [echo] ----------=========== formats-gpl ===========----------
#16 28.33
#16 28.33 init-timestamp:
#16 28.33
#16 28.33 init:
#16 28.33
#16 28.33 copy-resources:
#16 28.33
#16 28.33 compile:
#16 28.55 [resolver:resolve] Resolving artifacts
#16 28.56
#16 28.56 formats-gpl.jar:
#16 28.60 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.60 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.61
#16 28.61 deps-bio-formats-plugins:
#16 28.61
#16 28.61 jar-bio-formats-plugins:
#16 28.68 [echo] isSnapshot = true
#16 28.81
#16 28.81 init-title:
#16 28.81 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.81
#16 28.81 init-timestamp:
#16 28.81
#16 28.81 init:
#16 28.81
#16 28.81 copy-resources:
#16 28.81
#16 28.81 compile:
#16 29.03 [resolver:resolve] Resolving artifacts
#16 29.04
#16 29.04 bio-formats-plugins.jar:
#16 29.05 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 29.05 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 29.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 29.06 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.06 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.06
#16 29.06 deps-bio-formats-tools:
#16 29.06
#16 29.06 jar-bio-formats-tools:
#16 29.14 [echo] isSnapshot = true
#16 29.26
#16 29.26 init-title:
#16 29.26 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.26
#16 29.26 init-timestamp:
#16 29.26
#16 29.26 init:
#16 29.26
#16 29.26 copy-resources:
#16 29.26
#16 29.26 compile:
#16 29.49 [resolver:resolve] Resolving artifacts
#16 29.49
#16 29.49 bio-formats-tools.jar:
#16 29.50 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.50 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.50 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.51 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.51
#16 29.51 deps-tests:
#16 29.51
#16 29.51 jar-tests:
#16 29.61 [echo] isSnapshot = true
#16 29.74
#16 29.74 init-title:
#16 29.74 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.74
#16 29.74 init-timestamp:
#16 29.74
#16 29.74 init:
#16 29.74
#16 29.74 copy-resources:
#16 29.74
#16 29.74 compile:
#16 29.96 [resolver:resolve] Resolving artifacts
#16 29.97
#16 29.97 tests.jar:
#16 29.97 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.98 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.98 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.98 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.98
#16 29.98 jars:
#16 29.98
#16 29.98 tools:
#16 29.98 [echo] ----------=========== bioformats_package ===========----------
#16 30.06 [echo] isSnapshot = true
#16 30.21
#16 30.21 init-timestamp:
#16 30.21
#16 30.21 bundle:
#16 30.43 [resolver:resolve] Resolving artifacts
#16 30.44 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.49 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.65 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.96 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.22 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.80 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.81 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.81 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.87 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.13 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.21 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.25 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.28 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.75 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.77 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.80 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.97 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.99 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.27 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.35 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.41 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.50 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.68 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.69 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.14 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.15 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.26 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.32 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.33 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.34 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.50 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.52 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.52 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.54 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.54 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.57 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.97 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.09 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.52 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.97 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.52 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.52 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.56 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.56 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.57
#16 41.57 BUILD SUCCESSFUL
#16 41.57 Total time: 41 seconds
#16 DONE 42.4s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:f588005d823736db6a7034c5cffe98292049e2ac164487f340da1b96faa9ca65 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
[33m1 warning found (use --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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