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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (4.1 MB at 1.4 MB/s)
#14 300.6 [INFO] 
#14 300.6 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ formats-gpl ---
#14 300.6 [INFO] 
#14 300.6 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 300.6 [INFO] 
#14 300.6 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 300.6 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.6 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.6 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569006097
#14 300.6 [WARNING] Cannot get the branch information from the git repository: 
#14 300.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 300.6 
#14 300.6 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.6 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.6 [INFO] Storing buildScmBranch: UNKNOWN
#14 300.6 [INFO] 
#14 300.6 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ formats-gpl ---
#14 300.6 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 300.6 [INFO] Copying 1 resource
#14 300.6 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 300.6 [INFO] Copying 0 resource
#14 300.6 [INFO] Copying 1 resource
#14 300.7 [INFO] 
#14 300.7 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ formats-gpl ---
#14 300.7 [INFO] Changes detected - recompiling the module!
#14 300.7 [INFO] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 302.8 [INFO] 
#14 302.8 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ formats-gpl ---
#14 302.8 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 302.8 [INFO] Copying 24 resources
#14 302.8 [INFO] 
#14 302.8 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ formats-gpl ---
#14 302.8 [INFO] Changes detected - recompiling the module!
#14 302.8 [INFO] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 303.0 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 303.0 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 303.0 [INFO] 
#14 303.0 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ formats-gpl ---
#14 303.0 [INFO] 
#14 303.0 [INFO] -------------------------------------------------------
#14 303.0 [INFO]  T E S T S
#14 303.0 [INFO] -------------------------------------------------------
#14 303.2 [INFO] Running TestSuite
#14 304.4 2024-09-29 00:16:49,820 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@1ad777f reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.4 2024-09-29 00:16:49,824 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1af1347d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.4 2024-09-29 00:16:49,877 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@219f4597 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.4 2024-09-29 00:16:49,877 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7da10b5b reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:49,927 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@13e9f2e2 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:49,927 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@673bb956 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:49,975 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4beddc56 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:49,975 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@25cc7470 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:50,020 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6dba847b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.5 2024-09-29 00:16:50,020 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@1c6e0a08 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.6 2024-09-29 00:16:50,079 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4d8539de reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.6 2024-09-29 00:16:50,079 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3eba57a7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.7 2024-09-29 00:16:50,124 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@60921b21 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.7 2024-09-29 00:16:50,124 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@bd2f5a9 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.7 2024-09-29 00:16:50,166 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@37c5fc56 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.7 2024-09-29 00:16:50,166 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@43cf6ea3 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.9 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.776 s - in TestSuite
#14 305.3 [INFO] 
#14 305.3 [INFO] Results:
#14 305.3 [INFO] 
#14 305.3 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0
#14 305.3 [INFO] 
#14 305.3 [INFO] 
#14 305.3 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-mdb-test) @ formats-gpl ---
#14 305.3 [INFO] 
#14 305.3 [INFO] -------------------------------------------------------
#14 305.3 [INFO]  T E S T S
#14 305.3 [INFO] -------------------------------------------------------
#14 305.4 [INFO] Running TestSuite
#14 305.8 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.407 s - in TestSuite
#14 306.2 [INFO] 
#14 306.2 [INFO] Results:
#14 306.2 [INFO] 
#14 306.2 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 306.2 [INFO] 
#14 306.2 [INFO] 
#14 306.2 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-poi-test) @ formats-gpl ---
#14 306.2 [INFO] 
#14 306.2 [INFO] -------------------------------------------------------
#14 306.2 [INFO]  T E S T S
#14 306.2 [INFO] -------------------------------------------------------
#14 306.3 [INFO] Running TestSuite
#14 306.7 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.41 s - in TestSuite
#14 307.1 [INFO] 
#14 307.1 [INFO] Results:
#14 307.1 [INFO] 
#14 307.1 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 307.1 [INFO] 
#14 307.1 [INFO] 
#14 307.1 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-netcdf-test) @ formats-gpl ---
#14 307.1 [INFO] 
#14 307.1 [INFO] -------------------------------------------------------
#14 307.1 [INFO]  T E S T S
#14 307.1 [INFO] -------------------------------------------------------
#14 307.3 [INFO] Running TestSuite
#14 307.7 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.406 s - in TestSuite
#14 308.0 [INFO] 
#14 308.0 [INFO] Results:
#14 308.0 [INFO] 
#14 308.0 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 308.0 [INFO] 
#14 308.0 [INFO] 
#14 308.0 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ formats-gpl ---
#14 308.0 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar
#14 308.0 [INFO] 
#14 308.0 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ formats-gpl >>>
#14 308.0 [INFO] 
#14 308.0 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 308.0 [INFO] 
#14 308.0 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 308.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.0 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 308.0 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569013515
#14 308.1 [WARNING] Cannot get the branch information from the git repository: 
#14 308.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.1 
#14 308.1 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.1 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 308.1 [INFO] Storing buildScmBranch: UNKNOWN
#14 308.1 [INFO] 
#14 308.1 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ formats-gpl <<<
#14 308.1 [INFO] 
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ formats-gpl ---
#14 308.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ formats-gpl ---
#14 308.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ formats-gpl ---
#14 308.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#14 308.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#14 308.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 308.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 308.1 [INFO] 
#14 308.1 [INFO] ----------------------< ome:bio-formats_plugins >-----------------------
#14 308.1 [INFO] Building Bio-Formats Plugins for ImageJ 8.0.0-SNAPSHOT           [18/25]
#14 308.1 [INFO] --------------------------------[ jar ]---------------------------------
#14 308.1 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 308.2 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 304 kB/s)
#14 308.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
#14 308.2 Progress (1): 0/2.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 308.3 [INFO] 
#14 308.3 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats_plugins ---
#14 308.3 [INFO] 
#14 308.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats_plugins ---
#14 308.3 [INFO] 
#14 308.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats_plugins ---
#14 308.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.3 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569013784
#14 308.3 [WARNING] Cannot get the branch information from the git repository: 
#14 308.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.3 
#14 308.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 308.3 [INFO] 
#14 308.3 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats_plugins ---
#14 308.3 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 308.3 [INFO] Copying 3 resources
#14 308.3 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 308.3 [INFO] Copying 0 resource
#14 308.3 [INFO] Copying 0 resource
#14 308.3 [INFO] 
#14 308.3 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats_plugins ---
#14 308.3 [INFO] Changes detected - recompiling the module!
#14 308.3 [INFO] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 308.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 308.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 308.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 308.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 308.8 [INFO] 
#14 308.8 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats_plugins ---
#14 308.8 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 308.8 [INFO] Copying 1 resource
#14 308.8 [INFO] 
#14 308.8 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats_plugins ---
#14 308.9 [INFO] Changes detected - recompiling the module!
#14 308.9 [INFO] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 309.0 [INFO] 
#14 309.0 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats_plugins ---
#14 309.0 [INFO] 
#14 309.0 [INFO] -------------------------------------------------------
#14 309.0 [INFO]  T E S T S
#14 309.0 [INFO] -------------------------------------------------------
#14 309.2 [INFO] Running TestSuite
#14 310.4 Warning: Data has too many channels for Colorized color mode
#14 310.4 Warning: Data has too many channels for Colorized color mode
#14 310.5 Warning: Data has too many channels for Colorized color mode
#14 310.5 Warning: Data has too many channels for Colorized color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 310.7 Warning: Data has too many channels for Colorized color mode
#14 310.7 Warning: Data has too many channels for Composite color mode
#14 310.7 Warning: Data has too many channels for Composite color mode
#14 311.0 Warning: Data has too many channels for Composite color mode
#14 311.0 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.1 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.5 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 311.6 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.0 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.1 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.5 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Custom color mode
#14 312.7 Warning: Data has too many channels for Custom color mode
#14 312.7 Warning: Data has too many channels for Custom color mode
#14 312.7 Warning: Data has too many channels for Custom color mode
#14 312.7 Warning: Data has too many channels for Custom color mode
#14 312.8 Warning: Data has too many channels for Custom color mode
#14 312.8 Warning: Data has too many channels for Custom color mode
#14 312.8 Warning: Data has too many channels for Custom color mode
#14 312.8 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 313.0 Warning: Data has too many channels for Default color mode
#14 313.0 Warning: Data has too many channels for Default color mode
#14 313.0 Warning: Data has too many channels for Default color mode
#14 313.0 Warning: Data has too many channels for Default color mode
#14 313.1 Warning: Data has too many channels for Default color mode
#14 313.1 Warning: Data has too many channels for Default color mode
#14 313.1 Warning: Data has too many channels for Default color mode
#14 313.1 Warning: Data has too many channels for Default color mode
#14 313.2 Warning: Data has too many channels for Default color mode
#14 313.2 Warning: Data has too many channels for Default color mode
#14 313.2 Warning: Data has too many channels for Grayscale color mode
#14 313.2 Warning: Data has too many channels for Grayscale color mode
#14 313.3 Warning: Data has too many channels for Grayscale color mode
#14 313.3 Warning: Data has too many channels for Grayscale color mode
#14 313.3 Warning: Data has too many channels for Grayscale color mode
#14 313.3 Warning: Data has too many channels for Grayscale color mode
#14 313.3 Warning: Data has too many channels for Grayscale color mode
#14 313.4 Warning: Data has too many channels for Grayscale color mode
#14 313.4 Warning: Data has too many channels for Colorized color mode
#14 313.4 Warning: Data has too many channels for Colorized color mode
#14 313.4 Warning: Data has too many channels for Colorized color mode
#14 314.0 Warning: Data has too many channels for Default color mode
#14 314.2 [INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.061 s - in TestSuite
#14 314.6 [INFO] 
#14 314.6 [INFO] Results:
#14 314.6 [INFO] 
#14 314.6 [INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0
#14 314.6 [INFO] 
#14 314.6 [INFO] 
#14 314.6 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ bio-formats_plugins ---
#14 314.6 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 314.6 [INFO] 
#14 314.6 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bio-formats_plugins >>>
#14 314.6 [INFO] 
#14 314.6 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats_plugins ---
#14 314.6 [INFO] 
#14 314.6 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats_plugins ---
#14 314.6 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.6 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.6 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569020073
#14 314.6 [WARNING] Cannot get the branch information from the git repository: 
#14 314.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.6 
#14 314.6 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.6 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.6 [INFO] Storing buildScmBranch: UNKNOWN
#14 314.6 [INFO] 
#14 314.6 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bio-formats_plugins <<<
#14 314.6 [INFO] 
#14 314.6 [INFO] 
#14 314.6 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bio-formats_plugins ---
#14 314.6 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 314.6 [INFO] 
#14 314.6 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ bio-formats_plugins ---
#14 314.7 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 314.7 [INFO] 
#14 314.7 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats_plugins ---
#14 314.7 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 314.7 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#14 314.7 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 314.7 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 314.7 [INFO] 
#14 314.7 [INFO] -----------------------< ome:bio-formats-tools >------------------------
#14 314.7 [INFO] Building Bio-Formats command line tools 8.0.0-SNAPSHOT           [19/25]
#14 314.7 [INFO] --------------------------------[ jar ]---------------------------------
#14 314.7 [INFO] 
#14 314.7 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats-tools ---
#14 314.7 [INFO] 
#14 314.7 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats-tools ---
#14 314.7 [INFO] 
#14 314.7 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats-tools ---
#14 314.7 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.7 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.7 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569020146
#14 314.7 [WARNING] Cannot get the branch information from the git repository: 
#14 314.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.7 
#14 314.7 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.7 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.7 [INFO] Storing buildScmBranch: UNKNOWN
#14 314.7 [INFO] 
#14 314.7 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-tools ---
#14 314.7 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 314.7 [INFO] Copying 0 resource
#14 314.7 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 314.7 [INFO] Copying 0 resource
#14 314.7 [INFO] Copying 0 resource
#14 314.7 [INFO] 
#14 314.7 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-tools ---
#14 314.7 [INFO] Changes detected - recompiling the module!
#14 314.7 [INFO] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 314.9 [INFO] 
#14 314.9 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats-tools ---
#14 314.9 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 314.9 [INFO] Copying 1 resource
#14 314.9 [INFO] 
#14 314.9 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats-tools ---
#14 314.9 [INFO] Changes detected - recompiling the module!
#14 314.9 [INFO] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 315.0 [INFO] 
#14 315.0 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats-tools ---
#14 315.0 [INFO] 
#14 315.0 [INFO] -------------------------------------------------------
#14 315.0 [INFO]  T E S T S
#14 315.0 [INFO] -------------------------------------------------------
#14 315.1 [INFO] Running loci.formats.tools.ImageConverterTest
#14 381.9 [INFO] Tests run: 55, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 66.772 s - in loci.formats.tools.ImageConverterTest
#14 382.3 [INFO] 
#14 382.3 [INFO] Results:
#14 382.3 [INFO] 
#14 382.3 [INFO] Tests run: 55, Failures: 0, Errors: 0, Skipped: 0
#14 382.3 [INFO] 
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ bio-formats-tools ---
#14 382.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 382.3 [INFO] 
#14 382.3 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bio-formats-tools >>>
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats-tools ---
#14 382.3 [INFO] 
#14 382.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats-tools ---
#14 382.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 382.3 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569087773
#14 382.3 [WARNING] Cannot get the branch information from the git repository: 
#14 382.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 382.3 
#14 382.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 382.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 382.3 [INFO] 
#14 382.3 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bio-formats-tools <<<
#14 382.3 [INFO] 
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bio-formats-tools ---
#14 382.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ bio-formats-tools ---
#14 382.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats-tools ---
#14 382.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 382.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#14 382.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 382.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 382.3 [INFO] 
#14 382.3 [INFO] -----------------------< ome:bioformats_package >-----------------------
#14 382.3 [INFO] Building bioformats_package bundle 8.0.0-SNAPSHOT                [20/25]
#14 382.3 [INFO] --------------------------------[ pom ]---------------------------------
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bioformats_package ---
#14 382.3 [INFO] 
#14 382.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bioformats_package ---
#14 382.3 [INFO] 
#14 382.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bioformats_package ---
#14 382.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 382.4 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569087819
#14 382.4 [WARNING] Cannot get the branch information from the git repository: 
#14 382.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 382.4 
#14 382.4 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.4 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 382.4 [INFO] Storing buildScmBranch: UNKNOWN
#14 382.4 [INFO] 
#14 382.4 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bioformats_package >>>
#14 382.4 [INFO] 
#14 382.4 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bioformats_package ---
#14 382.4 [INFO] 
#14 382.4 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bioformats_package ---
#14 382.4 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.4 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 382.4 [INFO] Storing buildNumber: be0829654cc3e3f42b7de902870f0328637166d7 at timestamp: 1727569087837
#14 382.4 [WARNING] Cannot get the branch information from the git repository: 
#14 382.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 382.4 
#14 382.4 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 382.4 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 382.4 [INFO] Storing buildScmBranch: UNKNOWN
#14 382.4 [INFO] 
#14 382.4 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bioformats_package <<<
#14 382.4 [INFO] 
#14 382.4 [INFO] 
#14 382.4 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bioformats_package ---
#14 382.4 [INFO] 
#14 382.4 [INFO] --- maven-assembly-plugin:3.1.0:single (make-assembly) @ bioformats_package ---
#14 382.5 [INFO] Reading assembly descriptor: assembly.xml
#14 382.7 [WARNING] The following patterns were never triggered in this artifact exclusion filter:
#14 382.7 o  'gov.nih.imagej:imagej'
#14 382.7 o  'net.imagej:ij'
#14 382.7 o  'org.springframework:spring*'
#14 382.7 o  'aopalliance:aopalliance'
#14 382.7 o  'org.aspectj:aspectj*'
#14 382.7 o  'org.slf4j:slf4j-log4j12'
#14 382.7 o  'log4j:log4j'
#14 382.7 o  'org.testng:testng'
#14 382.7 o  'com.beust:jcommander'
#14 382.7 o  'org.beanshell:bsh'
#14 382.7 o  'edu.princeton.cup:java-cup'
#14 382.7 o  'org.apache.bcel:bcel'
#14 382.7 o  'regexp:regexp'
#14 382.7 o  'org.apache.ant:ant-trax'
#14 382.7 o  'edu.ucar:udunits'
#14 382.7 o  'javax.servlet:servlet-api'
#14 382.7 
#14 382.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
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#14 382.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
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#14 382.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
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#14 382.8 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 382.8 Progress (1): 4.1/5.2 kB
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#14 382.9 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 382.9 Progress (1): 1.3 kB
                    
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#14 382.9 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom
#14 382.9 Progress (1): 1.3 kB
                    
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#14 382.9 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom
#14 382.9 Progress (1): 1.3 kB
                    
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#14 382.9 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom
#14 383.0 Progress (1): 1.9 kB
                    
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#14 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom
#14 383.0 Progress (1): 1.5 kB
                    
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#14 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom
#14 383.0 Progress (1): 1.3 kB
                    
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#14 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom
#14 383.0 Progress (1): 1.3 kB
                    
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#14 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.pom
#14 383.1 Progress (1): 1.7 kB
                    
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.pom
#14 383.1 Progress (1): 1.9 kB
                    
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.1.0/org.osgi.util.function-1.1.0.pom
#14 383.1 Progress (1): 1.4 kB
                    
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom
#14 383.1 Progress (1): 2.7 kB
                    
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#14 383.1 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
#14 383.2 Progress (1): 3.8 kB
                    
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.25/slf4j-parent-1.7.25.pom
#14 383.2 Progress (1): 4.1/14 kB
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom
#14 383.2 Progress (1): 4.1/5.9 kB
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#14 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/2.1/felix-parent-2.1.pom
#14 383.2 Progress (1): 4.1/9.7 kB
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#14 383.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.1.0/org.osgi.core-4.1.0.pom
#14 383.3 Progress (1): 193 B
                   
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#14 383.3 Downloading from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/2.4/easymock-2.4.pom
#14 383.3 Progress (1): 4.1/5.3 kB
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#14 383.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.utils/1.6.0/org.apache.felix.utils-1.6.0.pom
#14 383.3 Progress (1): 3.3 kB
                    
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#14 383.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.compendium/4.2.0/org.osgi.compendium-4.2.0.pom
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#14 383.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.3.9/maven-core-3.3.9.pom
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#14 383.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/3.3.9/maven-3.3.9.pom
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#14 383.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.3.9/maven-model-3.3.9.pom
#14 383.4 Progress (1): 4.0 kB
                    
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#14 383.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.pom
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#14 383.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/37/commons-parent-37.pom
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#14 383.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.3.9/maven-settings-3.3.9.pom
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#14 383.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.pom
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#14 383.7 Progress (1): 2.7 kB
                    
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#14 383.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.pom
#14 383.7 Progress (1): 4.1/4.2 kB
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#14 383.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-plexus/0.3.2/sisu-plexus-0.3.2.pom
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-parent/6/weld-parent-6.pom
#14 383.8 Progress (1): 4.1/21 kB
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#14 383.8 Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.pom
#14 383.9 Progress (1): 1.0 kB
                    
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#14 383.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.pom
#14 383.9 Progress (1): 2.6 kB
                    
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#14 383.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-inject/0.3.2/sisu-inject-0.3.2.pom
#14 383.9 Progress (1): 4.1/14 kB
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#14 383.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.pom
#14 383.9 Progress (1): 4.1/7.3 kB
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#14 384.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.pom
#14 384.0 Progress (1): 3.4 kB
                    
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#14 384.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.3.9/maven-model-builder-3.3.9.pom
#14 384.0 Progress (1): 3.1 kB
                    
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#14 384.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.pom
#14 384.0 Progress (1): 4.1/5.7 kB
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#14 384.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/18.0/guava-parent-18.0.pom
#14 384.1 Progress (1): 4.1/7.7 kB
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#14 384.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.3.9/maven-aether-provider-3.3.9.pom
#14 384.1 Progress (1): 4.0 kB
                    
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#14 384.1 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.pom
#14 384.1 Progress (1): 1.8 kB
                    
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#14 384.1 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether/1.0.2.v20150114/aether-1.0.2.v20150114.pom
#14 384.1 Progress (1): 4.1/29 kB
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#14 384.2 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/1.0.2.v20150114/aether-spi-1.0.2.v20150114.pom
#14 384.2 Progress (1): 2.0 kB
                    
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#14 384.2 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-util/1.0.2.v20150114/aether-util-1.0.2.v20150114.pom
#14 384.2 Progress (1): 2.1 kB
                    
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#14 384.2 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/1.0.2.v20150114/aether-impl-1.0.2.v20150114.pom
#14 384.2 Progress (1): 3.4 kB
                    
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#14 384.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0.pom
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#14 384.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice-parent/4.0/guice-parent-4.0.pom
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#14 384.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/5/google-5.pom
#14 384.3 Progress (1): 2.5 kB
                    
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#14 384.3 Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.pom
#14 384.3 Progress (1): 363 B
                   
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#14 384.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/16.0.1/guava-16.0.1.pom
#14 384.4 Progress (1): 4.1/6.1 kB
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#14 384.4 [output clipped, log limit 2MiB reached]
#14 899.0 SLF4J: No SLF4J providers were found.
#14 899.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 899.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 909.3s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s

#16 [12/13] RUN ant jars tools
#16 0.705 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.430      [echo] isSnapshot = true
#16 3.536 
#16 3.536 copy-jars:
#16 3.536 
#16 3.536 deps-formats-api:
#16 3.619      [echo] isSnapshot = true
#16 3.674 
#16 3.674 install-pom:
#16 3.849 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 4.261 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.266 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 4.267 
#16 4.267 jar-formats-api:
#16 4.374      [echo] isSnapshot = true
#16 4.534 
#16 4.534 init-title:
#16 4.534      [echo] ----------=========== formats-api ===========----------
#16 4.534 
#16 4.534 init-timestamp:
#16 4.541 
#16 4.541 init:
#16 4.541 
#16 4.541 copy-resources:
#16 4.542     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.555      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.558 
#16 4.558 compile:
#16 4.739 [resolver:resolve] Resolving artifacts
#16 4.765     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 5.028     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.629     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.629     [javac] import loci.common.ReflectedUniverse;
#16 5.629     [javac]                   ^
#16 5.930     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.930     [javac]     int currentIndex = r.getCoreIndex();
#16 5.930     [javac]                         ^
#16 5.930     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.930     [javac]     r.setCoreIndex(coreIndex);
#16 5.930     [javac]      ^
#16 5.930     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.930     [javac]     r.setCoreIndex(currentIndex);
#16 5.930     [javac]      ^
#16 6.030     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.030     [javac]   public void setCoreIndex(int no) {
#16 6.030     [javac]               ^
#16 6.031     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.031     [javac]   public int getCoreIndex() {
#16 6.031     [javac]              ^
#16 6.031     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.031     [javac]   public int coreIndexToSeries(int index)
#16 6.031     [javac]              ^
#16 6.031     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.031     [javac]   public int seriesToCoreIndex(int series)
#16 6.031     [javac]              ^
#16 6.031     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.031     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.031     [javac]                             ^
#16 6.131     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.131     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 6.131     [javac]                                              ^
#16 6.131     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.132     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 6.132     [javac]                                              ^
#16 6.132     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.132     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 6.132     [javac]                                                      ^
#16 6.132     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.132     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 6.132     [javac]                                                      ^
#16 6.232     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.232     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.232     [javac]     ^
#16 6.232     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.232     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.232     [javac]                               ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.333     [javac]   public void setCoreIndex(int no) {
#16 6.333     [javac]               ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.333     [javac]   public int getCoreIndex() {
#16 6.333     [javac]              ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.333     [javac]   public int coreIndexToSeries(int index) {
#16 6.333     [javac]              ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.333     [javac]   public int seriesToCoreIndex(int series) {
#16 6.333     [javac]              ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.333     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.333     [javac]                             ^
#16 6.333     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.333     [javac]     return getReader().getCoreMetadataList();
#16 6.333     [javac]                       ^
#16 6.334     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.334     [javac]     return getReader().getCoreIndex();
#16 6.334     [javac]                       ^
#16 6.334     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.334     [javac]     getReader().setCoreIndex(no);
#16 6.334     [javac]                ^
#16 6.334     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.334     [javac]     return getReader().seriesToCoreIndex(series);
#16 6.334     [javac]                       ^
#16 6.334     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.334     [javac]     return getReader().coreIndexToSeries(index);
#16 6.334     [javac]                       ^
#16 6.434     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.434     [javac]   public void setCoreIndex(int no) {
#16 6.434     [javac]               ^
#16 6.434     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.434     [javac]   public int getCoreIndex() {
#16 6.435     [javac]              ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.435     [javac]   public int coreIndexToSeries(int index) {
#16 6.435     [javac]              ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.435     [javac]   public int seriesToCoreIndex(int series) {
#16 6.435     [javac]              ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.435     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.435     [javac]                             ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.435     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.435     [javac]                                        ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.435     [javac]     return reader.getCoreIndex();
#16 6.435     [javac]                  ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.435     [javac]     reader.setCoreIndex(no);
#16 6.435     [javac]           ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.435     [javac]     return reader.seriesToCoreIndex(series);
#16 6.435     [javac]                  ^
#16 6.435     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.435     [javac]     return reader.coreIndexToSeries(index);
#16 6.435     [javac]                  ^
#16 6.629     [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.629     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.629     [javac] 36 warnings
#16 6.630 
#16 6.630 formats-api.jar:
#16 6.630     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.653       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.685 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.688 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.822 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.823 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.825 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.826 
#16 6.826 deps-turbojpeg:
#16 6.826 
#16 6.826 jar-turbojpeg:
#16 6.920      [echo] isSnapshot = true
#16 7.064 
#16 7.064 init-title:
#16 7.065      [echo] ----------=========== turbojpeg ===========----------
#16 7.065 
#16 7.065 init-timestamp:
#16 7.065 
#16 7.065 init:
#16 7.065 
#16 7.065 copy-resources:
#16 7.065     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.067 
#16 7.067 compile:
#16 7.076 [resolver:resolve] Resolving artifacts
#16 7.079     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.281     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.961     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.961     [javac]   protected void finalize() throws Throwable {
#16 7.961     [javac]                  ^
#16 7.961     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.961     [javac]       super.finalize();
#16 7.961     [javac]            ^
#16 7.961     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.961     [javac]   protected void finalize() throws Throwable {
#16 7.961     [javac]                  ^
#16 7.961     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.961     [javac]       super.finalize();
#16 7.961     [javac]            ^
#16 7.961     [javac] 5 warnings
#16 7.962 
#16 7.962 jar:
#16 7.967       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 8.153 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 8.161 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 8.162 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 8.165 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.168 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 8.169 
#16 8.169 deps-formats-bsd:
#16 8.169 
#16 8.169 jar-formats-bsd:
#16 8.276      [echo] isSnapshot = true
#16 8.426 
#16 8.426 init-title:
#16 8.426      [echo] ----------=========== formats-bsd ===========----------
#16 8.426 
#16 8.426 init-timestamp:
#16 8.427 
#16 8.427 init:
#16 8.427 
#16 8.427 copy-resources:
#16 8.427     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.430      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.431 
#16 8.431 compile:
#16 8.644 [resolver:resolve] Resolving artifacts
#16 8.671     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.879     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.981     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.981     [javac] import loci.common.ReflectedUniverse;
#16 9.981     [javac]                   ^
#16 10.38     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.38     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 10.38     [javac]                            ^
#16 10.38     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.38     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.38     [javac]                                          ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.48     [javac]                   ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.48     [javac]     reader.setCoreIndex(coreIndex);
#16 10.48     [javac]           ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.48     [javac]                   ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.48     [javac]                   ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.48     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.48     [javac]                                         ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.48     [javac]                   ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.48     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.48     [javac]                                         ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.48     [javac]                   ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.48     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.48     [javac]                                  ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.48     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.48     [javac]                  ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.48     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.48     [javac]                                              ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 10.48     [javac]                             ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.48     [javac]               ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 10.48     [javac]                           ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.48     [javac]                 ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.48     [javac]               ^
#16 10.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.48     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.48     [javac]                            ^
#16 10.58     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.58     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.58     [javac]                               ^
#16 10.78     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.78     [javac]     BitWriter out = new BitWriter();
#16 10.78     [javac]     ^
#16 10.78     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.78     [javac]     BitWriter out = new BitWriter();
#16 10.78     [javac]                         ^
#16 10.88     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.88     [javac]       return new Double(v);
#16 10.88     [javac]              ^
#16 11.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.48     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.48     [javac]                                         ^
#16 11.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.48     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.48     [javac]                                         ^
#16 11.48     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.48     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.48     [javac]                                         ^
#16 11.68     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.68     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 11.68     [javac]                                 ^
#16 11.89     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.89     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.89     [javac]                                                                    ^
#16 11.89     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.89     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 11.89     [javac]                          ^
#16 11.99     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.99     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.99     [javac]                                                    ^
#16 11.99     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.99     [javac]   protected ReflectedUniverse r;
#16 11.99     [javac]             ^
#16 11.99     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.99     [javac]       r = new ReflectedUniverse();
#16 11.99     [javac]               ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1034: warning: [deprecation] NM in UNITS has been deprecated
#16 12.09     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 12.09     [javac]                                                                               ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1066: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 12.09     [javac]                                                                                ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1079: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 12.09     [javac]                                                                                   ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1080: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 12.09     [javac]                                                                                   ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1099: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 12.09     [javac]                                                                                        ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1103: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 12.09     [javac]                                                                                         ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1109: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 12.09     [javac]                                                                                        ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1157: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 12.09     [javac]                                                                                                               ^
#16 12.09     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1161: warning: [deprecation] MM in UNITS has been deprecated
#16 12.09     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 12.09     [javac]                                                                                                               ^
#16 12.19     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.19     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.19     [javac]               ^
#16 12.19     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.19     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.19     [javac]                                            ^
#16 12.19     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.19     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.19     [javac]               ^
#16 12.19     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.19     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.19     [javac]                                             ^
#16 12.29     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 12.29     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 12.29     [javac]                                        ^
#16 12.29     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.29     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 12.29     [javac]                           ^
#16 12.29     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.29     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 12.29     [javac]                   ^
#16 12.29     [javac] Note: Some input files use unchecked or unsafe operations.
#16 12.29     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 12.29     [javac] 50 warnings
#16 12.29 
#16 12.29 formats-bsd.jar:
#16 12.30       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.41 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 12.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 12.47 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 12.47 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.47 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.47 
#16 12.47 deps-formats-gpl:
#16 12.47 
#16 12.47 jar-formats-gpl:
#16 12.56      [echo] isSnapshot = true
#16 12.71 
#16 12.71 init-title:
#16 12.71      [echo] ----------=========== formats-gpl ===========----------
#16 12.71 
#16 12.71 init-timestamp:
#16 12.71 
#16 12.71 init:
#16 12.71 
#16 12.71 copy-resources:
#16 12.71     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.71      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.71 
#16 12.71 compile:
#16 12.95 [resolver:resolve] Resolving artifacts
#16 13.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.50 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.50 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.52     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.72     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.92     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.92     [javac] import loci.formats.codec.BitWriter;
#16 14.93     [javac]                          ^
#16 15.03     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.03     [javac] import loci.formats.codec.BitWriter;
#16 15.03     [javac]                          ^
#16 17.03     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 17.03     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 17.03     [javac]                                          ^
#16 17.03     [javac]   cast to Object for a varargs call
#16 17.03     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 17.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.13     [javac]     BitWriter bits = null;
#16 17.13     [javac]     ^
#16 17.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.13     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 17.13     [javac]                  ^
#16 17.43     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.43     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.43     [javac]                                                    ^
#16 17.83     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.83     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.83     [javac]     ^
#16 17.83     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.83     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.83     [javac]                          ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 18.13     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 18.13     [javac]                                            ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.13     [javac]         toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 18.13     [javac]                               ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.13     [javac]       String groupName = group.getName();
#16 18.13     [javac]                               ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 18.13     [javac]       List<Attribute> attributes = group.getAttributes();
#16 18.13     [javac]                                         ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.13     [javac]         String attributeName = attribute.getName();
#16 18.13     [javac]                                         ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.13     [javac]         String variableName = variable.getName();
#16 18.13     [javac]                                       ^
#16 18.13     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 18.13     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 18.13     [javac]                            ^
#16 18.13     [javac] Note: Some input files use unchecked or unsafe operations.
#16 18.13     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.13     [javac] 16 warnings
#16 18.13 
#16 18.13 formats-gpl.jar:
#16 18.14       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 18.27 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 18.27 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 18.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 18.28 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.29 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 18.29 
#16 18.29 deps-bio-formats-plugins:
#16 18.29 
#16 18.29 jar-bio-formats-plugins:
#16 18.38      [echo] isSnapshot = true
#16 18.51 
#16 18.51 init-title:
#16 18.51      [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.51 
#16 18.51 init-timestamp:
#16 18.51 
#16 18.51 init:
#16 18.51 
#16 18.51 copy-resources:
#16 18.51     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.52      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.52 
#16 18.52 compile:
#16 18.75 [resolver:resolve] Resolving artifacts
#16 18.77     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.97     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.77     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.77     [javac] import loci.common.ReflectedUniverse;
#16 19.77     [javac]                   ^
#16 19.87     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.87     [javac] import loci.common.ReflectedUniverse;
#16 19.87     [javac]                   ^
#16 20.28     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 20.28     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 20.28     [javac]                                      ^
#16 20.48     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.48     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 20.48     [javac]         ^
#16 20.48     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.48     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 20.48     [javac]                                   ^
#16 20.58     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.58     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.58     [javac]     ^
#16 20.58     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.58     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.58     [javac]                                ^
#16 20.95     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.95     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.95     [javac] 8 warnings
#16 20.95 
#16 20.95 bio-formats-plugins.jar:
#16 20.96       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.98 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.99 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.99 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.99 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.99 
#16 20.99 deps-bio-formats-tools:
#16 20.99 
#16 20.99 jar-bio-formats-tools:
#16 21.09      [echo] isSnapshot = true
#16 21.23 
#16 21.23 init-title:
#16 21.23      [echo] ----------=========== bio-formats-tools ===========----------
#16 21.23 
#16 21.23 init-timestamp:
#16 21.23 
#16 21.23 init:
#16 21.23 
#16 21.23 copy-resources:
#16 21.23     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.23 
#16 21.23 compile:
#16 21.46 [resolver:resolve] Resolving artifacts
#16 21.47     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.68     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.78     [javac] 1 warning
#16 22.79 
#16 22.79 bio-formats-tools.jar:
#16 22.79       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.80 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.80 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.87 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.87 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.87 
#16 22.87 deps-tests:
#16 22.87 
#16 22.87 jar-tests:
#16 22.96      [echo] isSnapshot = true
#16 23.09 
#16 23.09 init-title:
#16 23.09      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.09 
#16 23.09 init-timestamp:
#16 23.09 
#16 23.09 init:
#16 23.09 
#16 23.09 copy-resources:
#16 23.09     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.09 
#16 23.09 compile:
#16 23.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.47 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.89 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.34 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.35 [resolver:resolve] Resolving artifacts
#16 24.36 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.41 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.82 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.19 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.19     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.40     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.40     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.40     [javac]         int index = unflattenedReader.getCoreIndex();
#16 26.40     [javac]                                      ^
#16 26.40     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.40     [javac]         reader.setCoreIndex(index);
#16 26.40     [javac]               ^
#16 26.60     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.60     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.60     [javac]                                              ^
#16 26.60     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.60     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.60     [javac]                                              ^
#16 26.90     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.90     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.90     [javac]                                                    ^
#16 26.90     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.90     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.90     [javac]                                                    ^
#16 26.90     [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.90     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.90     [javac] 7 warnings
#16 26.93 
#16 26.93 tests.jar:
#16 26.93       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.94 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.95 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.95 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.95 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.95 
#16 26.95 jars:
#16 26.95 
#16 26.95 copy-jars:
#16 26.95 
#16 26.95 deps-formats-api:
#16 27.00      [echo] isSnapshot = true
#16 27.04 
#16 27.04 install-pom:
#16 27.17 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 27.17 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.17 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.18 
#16 27.18 jar-formats-api:
#16 27.29      [echo] isSnapshot = true
#16 27.42 
#16 27.42 init-title:
#16 27.42      [echo] ----------=========== formats-api ===========----------
#16 27.42 
#16 27.42 init-timestamp:
#16 27.42 
#16 27.42 init:
#16 27.42 
#16 27.42 copy-resources:
#16 27.42 
#16 27.42 compile:
#16 27.55 [resolver:resolve] Resolving artifacts
#16 27.55 
#16 27.55 formats-api.jar:
#16 27.57 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.57 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.58 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.58 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.58 
#16 27.58 deps-turbojpeg:
#16 27.58 
#16 27.58 jar-turbojpeg:
#16 27.66      [echo] isSnapshot = true
#16 27.78 
#16 27.78 init-title:
#16 27.78      [echo] ----------=========== turbojpeg ===========----------
#16 27.78 
#16 27.78 init-timestamp:
#16 27.78 
#16 27.78 init:
#16 27.78 
#16 27.78 copy-resources:
#16 27.78 
#16 27.78 compile:
#16 27.78 [resolver:resolve] Resolving artifacts
#16 27.79 
#16 27.79 jar:
#16 27.79 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.80 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.80 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.80 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.80 
#16 27.80 deps-formats-bsd:
#16 27.80 
#16 27.80 jar-formats-bsd:
#16 27.88      [echo] isSnapshot = true
#16 28.00 
#16 28.00 init-title:
#16 28.00      [echo] ----------=========== formats-bsd ===========----------
#16 28.00 
#16 28.00 init-timestamp:
#16 28.00 
#16 28.00 init:
#16 28.00 
#16 28.00 copy-resources:
#16 28.01 
#16 28.01 compile:
#16 28.20 [resolver:resolve] Resolving artifacts
#16 28.22 
#16 28.22 formats-bsd.jar:
#16 28.25 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 28.25 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 28.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 28.26 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.26 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.26 
#16 28.26 deps-formats-gpl:
#16 28.26 
#16 28.26 jar-formats-gpl:
#16 28.34      [echo] isSnapshot = true
#16 28.46 
#16 28.46 init-title:
#16 28.46      [echo] ----------=========== formats-gpl ===========----------
#16 28.46 
#16 28.46 init-timestamp:
#16 28.46 
#16 28.46 init:
#16 28.46 
#16 28.46 copy-resources:
#16 28.46 
#16 28.46 compile:
#16 28.67 [resolver:resolve] Resolving artifacts
#16 28.68 
#16 28.68 formats-gpl.jar:
#16 28.72 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.72 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.72 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.72 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.72 
#16 28.72 deps-bio-formats-plugins:
#16 28.72 
#16 28.72 jar-bio-formats-plugins:
#16 28.80      [echo] isSnapshot = true
#16 28.93 
#16 28.93 init-title:
#16 28.93      [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.93 
#16 28.93 init-timestamp:
#16 28.93 
#16 28.93 init:
#16 28.93 
#16 28.93 copy-resources:
#16 28.93 
#16 28.93 compile:
#16 29.15 [resolver:resolve] Resolving artifacts
#16 29.16 
#16 29.16 bio-formats-plugins.jar:
#16 29.17 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 29.18 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 29.18 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 29.18 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.18 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.18 
#16 29.18 deps-bio-formats-tools:
#16 29.18 
#16 29.18 jar-bio-formats-tools:
#16 29.26      [echo] isSnapshot = true
#16 29.38 
#16 29.38 init-title:
#16 29.38      [echo] ----------=========== bio-formats-tools ===========----------
#16 29.38 
#16 29.38 init-timestamp:
#16 29.38 
#16 29.38 init:
#16 29.38 
#16 29.38 copy-resources:
#16 29.38 
#16 29.38 compile:
#16 29.60 [resolver:resolve] Resolving artifacts
#16 29.61 
#16 29.61 bio-formats-tools.jar:
#16 29.62 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.62 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.62 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.62 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.63 
#16 29.63 deps-tests:
#16 29.63 
#16 29.63 jar-tests:
#16 29.70      [echo] isSnapshot = true
#16 29.83 
#16 29.83 init-title:
#16 29.83      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.83 
#16 29.83 init-timestamp:
#16 29.83 
#16 29.83 init:
#16 29.83 
#16 29.83 copy-resources:
#16 29.83 
#16 29.83 compile:
#16 30.05 [resolver:resolve] Resolving artifacts
#16 30.06 
#16 30.06 tests.jar:
#16 30.06 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 30.06 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 30.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 30.07 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 30.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.07 
#16 30.07 jars:
#16 30.07 
#16 30.07 tools:
#16 30.07      [echo] ----------=========== bioformats_package ===========----------
#16 30.15      [echo] isSnapshot = true
#16 30.28 
#16 30.28 init-timestamp:
#16 30.28 
#16 30.28 bundle:
#16 30.50 [resolver:resolve] Resolving artifacts
#16 30.51     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.54     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.66     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.73     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.74     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.96     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.80     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.89     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.04     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.22     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.33     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.34     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.40     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.84     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.86     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.90     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.97     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.07     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.12     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.45     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.61     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.63     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.63     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.79     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.80     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.25     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.26     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.65     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.65     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 35.09     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 35.65       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.13    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.69 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.73 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.74 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.74 
#16 41.74 BUILD SUCCESSFUL
#16 41.74 Total time: 41 seconds
#16 DONE 45.4s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.5s done
#18 writing image sha256:f673fa4b4aa8dc4046cfc3a1485b78e9c775d88433fd4b29dfa782a977568d2e done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.0s done
#18 DONE 3.6s

 1 warning found (use docker --debug to expand):
 - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS