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Full Log#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
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#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
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#14 382.4 Progress (2): 2.0/2.3 MB | 406/424 kB
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#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
#14 382.4 Progress (4): 2.3 MB | 62 kB | 53 kB | 20/435 kB
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#14 382.4 Progress (3): 2.3 MB | 53 kB | 172/435 kB
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#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.3.3/maven-shared-utils-3.3.3.jar
#14 382.4 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar (2.3 MB at 6.3 MB/s)
#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar
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#14 382.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
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#14 382.4 Progress (3): 290 kB | 139/154 kB | 125/632 kB
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#14 382.4 Progress (3): 154 kB | 437/632 kB | 90/195 kB
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#14 382.4 Progress (4): 154 kB | 437/632 kB | 90/195 kB | 4.1/76 kB
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#14 382.4 Progress (3): 445/632 kB | 98/195 kB | 20/76 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
#14 382.5 Progress (3): 453/632 kB | 102/195 kB | 29/76 kB
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#14 382.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.0/plexus-utils-3.3.0.jar
#14 382.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar (195 kB at 466 kB/s)
#14 382.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0/doxia-sink-api-1.0.jar
#14 382.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar (632 kB at 1.5 MB/s)
#14 382.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/1.0/doxia-site-renderer-1.0.jar
#14 382.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/tukaani/xz/1.9/xz-1.9.jar (116 kB at 271 kB/s)
#14 382.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar
#14 382.5 Progress (2): 37 kB | 4.1/10 kB
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Progress (3
#14 382.5 [output clipped, log limit 2MiB reached]
#14 483.6 SLF4J: No SLF4J providers were found.
#14 483.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 483.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 493.9s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.727 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.997 [echo] isSnapshot = true
#16 2.097
#16 2.097 copy-jars:
#16 2.097
#16 2.097 deps-formats-api:
#16 2.177 [echo] isSnapshot = true
#16 2.230
#16 2.230 install-pom:
#16 2.397 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.425 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.429 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.431
#16 2.431 jar-formats-api:
#16 2.544 [echo] isSnapshot = true
#16 2.693
#16 2.693 init-title:
#16 2.694 [echo] ----------=========== formats-api ===========----------
#16 2.694
#16 2.694 init-timestamp:
#16 2.701
#16 2.701 init:
#16 2.701
#16 2.701 copy-resources:
#16 2.702 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.714 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.717
#16 2.717 compile:
#16 2.902 [resolver:resolve] Resolving artifacts
#16 2.928 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.154 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.755 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.755 [javac] import loci.common.ReflectedUniverse;
#16 3.755 [javac] ^
#16 4.055 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.055 [javac] int currentIndex = r.getCoreIndex();
#16 4.055 [javac] ^
#16 4.056 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.056 [javac] r.setCoreIndex(coreIndex);
#16 4.056 [javac] ^
#16 4.056 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.056 [javac] r.setCoreIndex(currentIndex);
#16 4.056 [javac] ^
#16 4.156 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.156 [javac] public void setCoreIndex(int no) {
#16 4.156 [javac] ^
#16 4.156 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.157 [javac] public int getCoreIndex() {
#16 4.157 [javac] ^
#16 4.157 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.157 [javac] public int coreIndexToSeries(int index)
#16 4.157 [javac] ^
#16 4.157 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.157 [javac] public int seriesToCoreIndex(int series)
#16 4.157 [javac] ^
#16 4.157 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.157 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.157 [javac] ^
#16 4.258 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.258 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.258 [javac] ^
#16 4.258 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.258 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.258 [javac] ^
#16 4.258 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.258 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.258 [javac] ^
#16 4.258 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.258 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.258 [javac] ^
#16 4.359 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.359 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.359 [javac] ^
#16 4.359 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.359 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.359 [javac] ^
#16 4.459 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.459 [javac] public void setCoreIndex(int no) {
#16 4.459 [javac] ^
#16 4.459 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.459 [javac] public int getCoreIndex() {
#16 4.459 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.460 [javac] public int coreIndexToSeries(int index) {
#16 4.460 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.460 [javac] public int seriesToCoreIndex(int series) {
#16 4.460 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.460 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.460 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:137: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.460 [javac] reader = c[i].newInstance();
#16 4.460 [javac] ^
#16 4.460 [javac] where T is a type-variable:
#16 4.460 [javac] T extends Object declared in class Class
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.460 [javac] return getReader().getCoreMetadataList();
#16 4.460 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.460 [javac] return getReader().getCoreIndex();
#16 4.460 [javac] ^
#16 4.460 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.460 [javac] getReader().setCoreIndex(no);
#16 4.460 [javac] ^
#16 4.461 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.461 [javac] return getReader().seriesToCoreIndex(series);
#16 4.461 [javac] ^
#16 4.461 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.461 [javac] return getReader().coreIndexToSeries(index);
#16 4.461 [javac] ^
#16 4.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageWriter.java:124: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.561 [javac] writer = c[i].newInstance();
#16 4.561 [javac] ^
#16 4.561 [javac] where T is a type-variable:
#16 4.561 [javac] T extends Object declared in class Class
#16 4.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.561 [javac] public void setCoreIndex(int no) {
#16 4.561 [javac] ^
#16 4.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.561 [javac] public int getCoreIndex() {
#16 4.561 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.562 [javac] public int coreIndexToSeries(int index) {
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.562 [javac] public int seriesToCoreIndex(int series) {
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.562 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.562 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.562 [javac] return reader.getCoreIndex();
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.562 [javac] reader.setCoreIndex(no);
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.562 [javac] return reader.seriesToCoreIndex(series);
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.562 [javac] return reader.coreIndexToSeries(index);
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:726: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.563 [javac] childCopy = c.newInstance();
#16 4.563 [javac] ^
#16 4.563 [javac] where T is a type-variable:
#16 4.563 [javac] T extends Object declared in class Class
#16 4.663 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/WriterWrapper.java:454: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.663 [javac] childCopy = (IFormatWriter) c.newInstance();
#16 4.663 [javac] ^
#16 4.663 [javac] where T is a type-variable:
#16 4.663 [javac] T extends Object declared in class Class
#16 4.764 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.764 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.764 [javac] 40 warnings
#16 4.786
#16 4.786 formats-api.jar:
#16 4.787 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.823 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.857 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.861 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.865 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.866 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.869 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.870
#16 4.870 deps-turbojpeg:
#16 4.870
#16 4.870 jar-turbojpeg:
#16 4.972 [echo] isSnapshot = true
#16 5.120
#16 5.120 init-title:
#16 5.120 [echo] ----------=========== turbojpeg ===========----------
#16 5.121
#16 5.121 init-timestamp:
#16 5.121
#16 5.121 init:
#16 5.121
#16 5.121 copy-resources:
#16 5.121 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.123
#16 5.123 compile:
#16 5.132 [resolver:resolve] Resolving artifacts
#16 5.135 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.338 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.038 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 6.038 [javac] protected void finalize() throws Throwable {
#16 6.038 [javac] ^
#16 6.039 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 6.039 [javac] super.finalize();
#16 6.039 [javac] ^
#16 6.039 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 6.039 [javac] protected void finalize() throws Throwable {
#16 6.039 [javac] ^
#16 6.039 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 6.039 [javac] super.finalize();
#16 6.039 [javac] ^
#16 6.039 [javac] 5 warnings
#16 6.063
#16 6.063 jar:
#16 6.068 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.253 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.260 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.271 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.274 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.277 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.278
#16 6.278 deps-formats-bsd:
#16 6.278
#16 6.278 jar-formats-bsd:
#16 6.388 [echo] isSnapshot = true
#16 6.526
#16 6.526 init-title:
#16 6.526 [echo] ----------=========== formats-bsd ===========----------
#16 6.526
#16 6.526 init-timestamp:
#16 6.527
#16 6.527 init:
#16 6.527
#16 6.527 copy-resources:
#16 6.527 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.530 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.531
#16 6.531 compile:
#16 6.736 [resolver:resolve] Resolving artifacts
#16 6.762 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.971 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.072 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.072 [javac] import loci.common.ReflectedUniverse;
#16 8.072 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] int n = reader.getCoreMetadataList().size();
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.573 [javac] reader.setCoreIndex(coreIndex);
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] int n = reader.getCoreMetadataList().size();
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] int n = reader.getCoreMetadataList().size();
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.573 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.573 [javac] int n = reader.getCoreMetadataList().size();
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.573 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.573 [javac] ^
#16 8.573 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] int n = reader.getCoreMetadataList().size();
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.574 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.574 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.574 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.574 [javac] ^
#16 8.574 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.574 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.574 [javac] ^
#16 8.675 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.675 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.675 [javac] ^
#16 8.875 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.875 [javac] BitWriter out = new BitWriter();
#16 8.875 [javac] ^
#16 8.875 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.875 [javac] BitWriter out = new BitWriter();
#16 8.875 [javac] ^
#16 8.975 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.975 [javac] return new Double(v);
#16 8.975 [javac] ^
#16 9.676 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.676 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.676 [javac] ^
#16 9.676 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.676 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.676 [javac] ^
#16 9.676 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.676 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.676 [javac] ^
#16 9.777 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.777 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.777 [javac] ^
#16 9.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.977 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.977 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.08 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.08 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.18 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.18 [javac] protected ReflectedUniverse r;
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.18 [javac] r = new ReflectedUniverse();
#16 10.18 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.28 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.28 [javac] ^
#16 10.28 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.28 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.28 [javac] ^
#16 10.38 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.38 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.38 [javac] ^
#16 10.38 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.38 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.38 [javac] ^
#16 10.38 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.38 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.38 [javac] ^
#16 10.45 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.45 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.45 [javac] 46 warnings
#16 10.45
#16 10.45 formats-bsd.jar:
#16 10.46 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.56 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.57 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.63 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.63 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.63
#16 10.63 deps-formats-gpl:
#16 10.63
#16 10.63 jar-formats-gpl:
#16 10.73 [echo] isSnapshot = true
#16 10.87
#16 10.87 init-title:
#16 10.87 [echo] ----------=========== formats-gpl ===========----------
#16 10.87
#16 10.87 init-timestamp:
#16 10.87
#16 10.87 init:
#16 10.87
#16 10.87 copy-resources:
#16 10.87 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.88 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.88
#16 10.88 compile:
#16 11.26 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.48 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.52 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.96 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.98 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.01 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.15 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.20 [resolver:resolve] Resolving artifacts
#16 12.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.28 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.28 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.70 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.70 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.72 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.93 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.23 [javac] import loci.formats.codec.BitWriter;
#16 14.23 [javac] ^
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.23 [javac] import loci.formats.codec.BitWriter;
#16 14.23 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:155: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] xSize = new Double(token);
#16 14.53 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:158: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] ySize = new Double(token);
#16 14.53 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:161: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] zSize = new Double(token);
#16 14.53 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:172: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] xLength = new Double(token);
#16 14.53 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:175: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] yLength = new Double(token);
#16 14.53 [javac] ^
#16 14.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:178: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.53 [javac] zLength = new Double(token);
#16 14.53 [javac] ^
#16 14.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:241: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.63 [javac] new ElectricPotential(new Double(voltage), UNITS.VOLT), 0, 0);
#16 14.63 [javac] ^
#16 14.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:256: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.63 [javac] new Double(magnification), 0, 0);
#16 14.63 [javac] ^
#16 14.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:260: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.63 [javac] store.setObjectiveWorkingDistance(new Length(new Double(workingDistance), UNITS.MICROMETER), 0, 0);
#16 14.63 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:463: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] Double magnification = new Double(mag);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:467: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:765: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] store.setRectangleX(new Double(cols[2]), i - firstRow, 0);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:766: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] store.setRectangleY(new Double(cols[3]), i - firstRow, 0);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:767: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] store.setRectangleWidth(new Double(cols[4]), i - firstRow, 0);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:768: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] store.setRectangleHeight(new Double(cols[5]), i - firstRow, 0);
#16 14.74 [javac] ^
#16 14.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:403: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.74 [javac] try { exp = new Double(exposure); }
#16 14.74 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:847: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.84 [javac] if (!tiles.containsKey(new Integer(value))) {
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:851: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.84 [javac] int v = tiles.get(new Integer(value)).intValue() + 1;
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.84 [javac] tiles.put(new Integer(value), new Integer(v));
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 14.84 [javac] tiles.put(new Integer(value), new Integer(v));
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:912: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] Double wave = new Double(value);
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:921: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.84 [javac] Double wave = new Double(Double.parseDouble(value));
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:934: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 14.84 [javac] if (exposureTime.get(new Integer(cIndex)) == null) {
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:936: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 14.84 [javac] exposureTime.put(new Integer(cIndex), String.valueOf(exp));
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:963: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] store.setObjectiveLensNA(new Double(value), 0, 0);
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:974: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:981: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] store.setObjectiveWorkingDistance(new Length(new Double(value), UNITS.MICROMETER), 0, 0);
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1007: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] detectorGain.put(cIndex, new Double(value));
#16 14.84 [javac] ^
#16 14.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1010: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.84 [javac] detectorOffset.put(cIndex, new Double(value));
#16 14.84 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:505: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.94 [javac] store.setObjectiveLensNA(new Double(lens), 0, 0);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:506: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.94 [javac] store.setObjectiveNominalMagnification(new Double(magFactor), 0, 0);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:676: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] offset.add(new Double(value));
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:687: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] gain.add(new Double(value));
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:701: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] Double pixelSize = new Double(values[2]);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:725: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] Double pixelSize = new Double(values[3]);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:733: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] Double pixelSize = new Double(values[3]);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:757: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] Double sizeZ = new Double(values[14]);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:854: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] store.setDetectorOffset(new Double(values[i * 3]), 0, i);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:855: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.94 [javac] store.setDetectorGain(new Double(values[i * 3 + 1]), 0, i);
#16 14.94 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:248: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.04 [javac] gain = new Double(value);
#16 15.04 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:251: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.04 [javac] exposureTime = new Double(value);
#16 15.04 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:290: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.04 [javac] physicalSizeX = new Double(attrValue) / getSizeX();
#16 15.04 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:294: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.04 [javac] physicalSizeY = new Double(attrValue) / getSizeY();
#16 15.04 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:219: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.04 [javac] i1 = new Integer(s1);
#16 15.04 [javac] ^
#16 15.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:224: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.04 [javac] i2 = new Integer(s2);
#16 15.04 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1749: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 15.24 [javac] value = new Boolean(vsi.readBoolean()).toString();
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1887: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 15.24 [javac] pyramid.exposureTimes.add(new Long(value));
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1890: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 15.24 [javac] pyramid.defaultExposureTime = new Long(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1894: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 15.24 [javac] pyramid.acquisitionTime = new Long(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1897: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.refractiveIndex = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1900: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.magnification = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1903: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.numericalAperture = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1906: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.workingDistance = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1912: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.24 [javac] pyramid.objectiveTypes.add(new Integer(value));
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1915: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.24 [javac] pyramid.bitDepth = new Integer(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1918: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.24 [javac] pyramid.binningX = new Integer(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1921: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.24 [javac] pyramid.binningY = new Integer(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1924: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.gain = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1927: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.offset = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1930: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.redGain = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1933: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.greenGain = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1936: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.blueGain = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1939: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.redOffset = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1942: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.greenOffset = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1945: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.blueOffset = new Double(value);
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1949: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.channelWavelengths.add(new Double(value));
#16 15.24 [javac] ^
#16 15.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1952: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.24 [javac] pyramid.workingDistance = new Double(value);
#16 15.24 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:152: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 15.34 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:603: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 15.34 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:636: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 15.34 [javac] fieldMap[row][col] = new Boolean(mapping[col].trim()).booleanValue();
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:640: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 15.34 [javac] doChannels = new Boolean(value.toLowerCase());
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:781: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double posX = new Double(axes[0]);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:782: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double posY = new Double(axes[1]);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:802: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double xSize = new Double(value.substring(0, s).trim());
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:803: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double ySize = new Double(value.substring(s + 1, end).trim());
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:830: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double gain = new Double(token.replaceAll("gain ", ""));
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:857: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double emission = new Double(em);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:858: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] Double excitation = new Double(ex);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:539: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 15.34 [javac] Long color = new Long(value);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:551: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.deltaT = new Double(value);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:557: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.emWavelength = new Double(value);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:560: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.exWavelength = new Double(value);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:564: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.sizeX = correctUnits(new Double(value), unit);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:568: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.sizeY = correctUnits(new Double(value), unit);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:572: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.positionX = correctUnits(new Double(value), unit);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:576: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.positionY = correctUnits(new Double(value), unit);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:580: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 15.34 [javac] p.positionZ = correctUnits(new Double(value), unit);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:728: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.34 [javac] plateRows = new Integer(value);
#16 15.34 [javac] ^
#16 15.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:731: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 15.34 [javac] plateColumns = new Integer(value);
#16 15.34 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:862: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] Double x = new Double(pixX);
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:867: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] Double y = new Double(pixY);
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:872: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] Double z = new Double(pixZ);
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:951: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] expTime[coords[1]] = new Double(hdr.expTime);
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:956: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] new Time(new Double(hdr.timeStampSeconds), UNITS.SECOND), series, i);
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:970: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] FormatTools.getEmissionWavelength(new Double(waves[w]));
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:972: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] FormatTools.getExcitationWavelength(new Double(hdr.exWavelen));
#16 15.44 [javac] ^
#16 15.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:980: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 15.44 [javac] if (ndFilters[w] == null) ndFilters[w] = new Double(hdr.ndFilter);
#16 15.44 [javac] ^
#16 17.44 [javac] Note: Some input files additionally use or override a deprecated API.
#16 17.44 [javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
#16 17.44 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.44 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.44 [javac] 100 warnings
#16 17.44 [javac] only showing the first 100 warnings, of 101 total; use -Xmaxwarns if you would like to see more
#16 17.47
#16 17.47 formats-gpl.jar:
#16 17.48 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.62 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.62 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.70 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.70 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.70
#16 17.70 deps-bio-formats-plugins:
#16 17.70
#16 17.70 jar-bio-formats-plugins:
#16 17.80 [echo] isSnapshot = true
#16 17.93
#16 17.93 init-title:
#16 17.93 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.93
#16 17.93 init-timestamp:
#16 17.93
#16 17.93 init:
#16 17.93
#16 17.93 copy-resources:
#16 17.93 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.94 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.94
#16 17.94 compile:
#16 18.22 [resolver:resolve] Resolving artifacts
#16 18.24 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.55 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.25 [javac] import loci.common.ReflectedUniverse;
#16 19.25 [javac] ^
#16 19.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.35 [javac] import loci.common.ReflectedUniverse;
#16 19.35 [javac] ^
#16 19.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.75 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.75 [javac] ^
#16 19.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.95 [javac] ^
#16 19.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.95 [javac] ^
#16 20.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.05 [javac] ^
#16 20.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.05 [javac] ^
#16 20.45 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.45 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.45 [javac] 8 warnings
#16 20.45
#16 20.45 bio-formats-plugins.jar:
#16 20.46 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.49 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.50 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.56 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.56 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.56
#16 20.56 deps-bio-formats-tools:
#16 20.56
#16 20.56 jar-bio-formats-tools:
#16 20.65 [echo] isSnapshot = true
#16 20.80
#16 20.80 init-title:
#16 20.80 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.80
#16 20.80 init-timestamp:
#16 20.80
#16 20.80 init:
#16 20.80
#16 20.80 copy-resources:
#16 20.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.80
#16 20.80 compile:
#16 21.04 [resolver:resolve] Resolving artifacts
#16 21.05 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.26 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.16 [javac] /bio-formats-build/bioformats/components/bio-formats-tools/src/loci/formats/tools/ImageInfo.java:370: warning: [deprecation] newInstance() in Class has been deprecated
#16 22.16 [javac] reader = (IFormatReader) c.newInstance();
#16 22.16 [javac] ^
#16 22.16 [javac] where T is a type-variable:
#16 22.16 [javac] T extends Object declared in class Class
#16 22.36 [javac] 2 warnings
#16 22.36
#16 22.36 bio-formats-tools.jar:
#16 22.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.37 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.38 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.38 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.38
#16 22.38 deps-tests:
#16 22.38
#16 22.38 jar-tests:
#16 22.46 [echo] isSnapshot = true
#16 22.59
#16 22.59 init-title:
#16 22.59 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.59
#16 22.59 init-timestamp:
#16 22.59
#16 22.59 init:
#16 22.59
#16 22.59 copy-resources:
#16 22.59 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.59
#16 22.59 compile:
#16 22.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.94 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.96 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.38 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.80 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.81 [resolver:resolve] Resolving artifacts
#16 23.82 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.86 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.88 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.30 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.68 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.68 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.89 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:205: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(test.trim()).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:210: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(globalTable.get(HAS_VALID_XML)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:264: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(currentTable.get(IS_INTERLEAVED)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:268: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(currentTable.get(IS_INDEXED)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:272: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(currentTable.get(IS_FALSE_COLOR)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:276: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(currentTable.get(IS_RGB)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:292: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 25.89 [javac] return new Boolean(currentTable.get(IS_LITTLE_ENDIAN)).booleanValue();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:327: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return timeIncrement == null ? null : FormatTools.getTime(new Double(timeIncrement), timeIncrementUnits);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:354: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return exposure == null ? null : FormatTools.getTime(new Double(exposure), exposureUnits);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:363: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return deltaT == null ? null : new Double(deltaT);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:368: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return pos == null ? null : new Double(pos);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:377: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return pos == null ? null : new Double(pos);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:386: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return pos == null ? null : new Double(pos);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:397: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), emissionUnits);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:408: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.89 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), excitationUnits);
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.89 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.89 [javac] ^
#16 25.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.89 [javac] reader.setCoreIndex(index);
#16 25.89 [javac] ^
#16 25.99 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:831: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 25.99 [javac] return physicalSize == null ? null : UnitsLength.create(new Double(physicalSize), unit);
#16 25.99 [javac] ^
#16 26.09 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.09 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.09 [javac] ^
#16 26.19 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.19 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.19 [javac] ^
#16 26.29 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:113: warning: [deprecation] newInstance() in Class has been deprecated
#16 26.29 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 26.29 [javac] ^
#16 26.29 [javac] where T is a type-variable:
#16 26.29 [javac] T extends Object declared in class Class
#16 26.29 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:122: warning: [deprecation] newInstance() in Class has been deprecated
#16 26.29 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 26.29 [javac] ^
#16 26.29 [javac] where T is a type-variable:
#16 26.29 [javac] T extends Object declared in class Class
#16 26.39 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.39 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.39 [javac] ^
#16 26.39 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.39 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.39 [javac] ^
#16 26.48 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.48 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.48 [javac] 25 warnings
#16 26.48
#16 26.48 tests.jar:
#16 26.48 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.50 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.50 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.50 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.51 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.51
#16 26.51 jars:
#16 26.51
#16 26.51 copy-jars:
#16 26.51
#16 26.51 deps-formats-api:
#16 26.55 [echo] isSnapshot = true
#16 26.59
#16 26.59 install-pom:
#16 26.76 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.76 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.76 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.76
#16 26.76 jar-formats-api:
#16 26.84 [echo] isSnapshot = true
#16 26.97
#16 26.97 init-title:
#16 26.97 [echo] ----------=========== formats-api ===========----------
#16 26.97
#16 26.97 init-timestamp:
#16 26.97
#16 26.97 init:
#16 26.97
#16 26.97 copy-resources:
#16 26.97
#16 26.97 compile:
#16 27.10 [resolver:resolve] Resolving artifacts
#16 27.11
#16 27.11 formats-api.jar:
#16 27.12 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.13 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.13 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.13 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.13
#16 27.13 deps-turbojpeg:
#16 27.13
#16 27.13 jar-turbojpeg:
#16 27.22 [echo] isSnapshot = true
#16 27.35
#16 27.35 init-title:
#16 27.35 [echo] ----------=========== turbojpeg ===========----------
#16 27.35
#16 27.35 init-timestamp:
#16 27.35
#16 27.35 init:
#16 27.35
#16 27.35 copy-resources:
#16 27.35
#16 27.35 compile:
#16 27.36 [resolver:resolve] Resolving artifacts
#16 27.36
#16 27.36 jar:
#16 27.37 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.37 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.38 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.38 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.38
#16 27.38 deps-formats-bsd:
#16 27.38
#16 27.38 jar-formats-bsd:
#16 27.46 [echo] isSnapshot = true
#16 27.58
#16 27.58 init-title:
#16 27.58 [echo] ----------=========== formats-bsd ===========----------
#16 27.58
#16 27.58 init-timestamp:
#16 27.58
#16 27.58 init:
#16 27.58
#16 27.58 copy-resources:
#16 27.58
#16 27.58 compile:
#16 27.78 [resolver:resolve] Resolving artifacts
#16 27.80
#16 27.80 formats-bsd.jar:
#16 27.83 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.84 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.84 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.84
#16 27.84 deps-formats-gpl:
#16 27.84
#16 27.84 jar-formats-gpl:
#16 27.92 [echo] isSnapshot = true
#16 28.05
#16 28.05 init-title:
#16 28.05 [echo] ----------=========== formats-gpl ===========----------
#16 28.05
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#16 28.05 copy-resources:
#16 28.05
#16 28.05 compile:
#16 28.27 [resolver:resolve] Resolving artifacts
#16 28.29
#16 28.29 formats-gpl.jar:
#16 28.33 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.33 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.34 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.34 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.34
#16 28.34 deps-bio-formats-plugins:
#16 28.34
#16 28.34 jar-bio-formats-plugins:
#16 28.45 [echo] isSnapshot = true
#16 28.58
#16 28.58 init-title:
#16 28.58 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 28.58 compile:
#16 28.80 [resolver:resolve] Resolving artifacts
#16 28.81
#16 28.81 bio-formats-plugins.jar:
#16 28.83 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.83 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.84 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.84
#16 28.84 deps-bio-formats-tools:
#16 28.84
#16 28.84 jar-bio-formats-tools:
#16 28.92 [echo] isSnapshot = true
#16 29.05
#16 29.05 init-title:
#16 29.05 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.05
#16 29.05 init-timestamp:
#16 29.05
#16 29.05 init:
#16 29.05
#16 29.05 copy-resources:
#16 29.05
#16 29.05 compile:
#16 29.27 [resolver:resolve] Resolving artifacts
#16 29.28
#16 29.28 bio-formats-tools.jar:
#16 29.29 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.29 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.29 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.29 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.29
#16 29.29 deps-tests:
#16 29.29
#16 29.29 jar-tests:
#16 29.38 [echo] isSnapshot = true
#16 29.50
#16 29.50 init-title:
#16 29.50 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.50
#16 29.50 init-timestamp:
#16 29.50
#16 29.50 init:
#16 29.50
#16 29.50 copy-resources:
#16 29.50
#16 29.50 compile:
#16 29.73 [resolver:resolve] Resolving artifacts
#16 29.74
#16 29.74 tests.jar:
#16 29.75 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.75 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.75 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.75 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.76
#16 29.76 jars:
#16 29.76
#16 29.76 tools:
#16 29.76 [echo] ----------=========== bioformats_package ===========----------
#16 29.84 [echo] isSnapshot = true
#16 30.02
#16 30.02 init-timestamp:
#16 30.02
#16 30.02 bundle:
#16 30.24 [resolver:resolve] Resolving artifacts
#16 30.25 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.30 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.39 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.75 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.77 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.83 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.84 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.64 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.65 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.80 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.94 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.97 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.04 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.12 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.58 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.82 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.85 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.08 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.14 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.37 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.82 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.94 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.76 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.31 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.39 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.39 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.40
#16 41.40 BUILD SUCCESSFUL
#16 41.40 Total time: 40 seconds
#16 DONE 42.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.7s done
#18 writing image sha256:2f23e2ad0b8073998867ce185086737e174762e96ddbd8acdeba172301a3b110 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.7s
Finished: SUCCESS
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