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#14 400.1 [output clipped, log limit 2MiB reached]
#14 494.7 SLF4J: No SLF4J providers were found.
#14 494.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 494.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 504.7s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 1.491 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.390 [echo] isSnapshot = true
#16 2.497
#16 2.497 copy-jars:
#16 2.497
#16 2.497 deps-formats-api:
#16 2.577 [echo] isSnapshot = true
#16 2.634
#16 2.634 install-pom:
#16 2.813 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.822 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.826 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.828
#16 2.828 jar-formats-api:
#16 2.936 [echo] isSnapshot = true
#16 3.118
#16 3.118 init-title:
#16 3.118 [echo] ----------=========== formats-api ===========----------
#16 3.118
#16 3.118 init-timestamp:
#16 3.124
#16 3.124 init:
#16 3.124
#16 3.124 copy-resources:
#16 3.125 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.138 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.140
#16 3.140 compile:
#16 3.321 [resolver:resolve] Resolving artifacts
#16 3.348 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.649 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.349 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.349 [javac] import loci.common.ReflectedUniverse;
#16 4.350 [javac] ^
#16 4.550 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.550 [javac] int currentIndex = r.getCoreIndex();
#16 4.551 [javac] ^
#16 4.551 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.551 [javac] r.setCoreIndex(coreIndex);
#16 4.551 [javac] ^
#16 4.551 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.551 [javac] r.setCoreIndex(currentIndex);
#16 4.551 [javac] ^
#16 4.651 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.651 [javac] public void setCoreIndex(int no) {
#16 4.651 [javac] ^
#16 4.652 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.652 [javac] public int getCoreIndex() {
#16 4.652 [javac] ^
#16 4.652 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.652 [javac] public int coreIndexToSeries(int index)
#16 4.652 [javac] ^
#16 4.652 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.652 [javac] public int seriesToCoreIndex(int series)
#16 4.652 [javac] ^
#16 4.653 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.653 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.653 [javac] ^
#16 4.753 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.753 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.753 [javac] ^
#16 4.753 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.753 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.753 [javac] ^
#16 4.754 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.754 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.754 [javac] ^
#16 4.754 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.754 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.754 [javac] ^
#16 4.854 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.854 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.854 [javac] ^
#16 4.854 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.854 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.855 [javac] ^
#16 4.955 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.955 [javac] public void setCoreIndex(int no) {
#16 4.955 [javac] ^
#16 4.955 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.955 [javac] public int getCoreIndex() {
#16 4.955 [javac] ^
#16 4.955 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.955 [javac] public int coreIndexToSeries(int index) {
#16 4.955 [javac] ^
#16 4.955 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.955 [javac] public int seriesToCoreIndex(int series) {
#16 4.956 [javac] ^
#16 4.956 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.956 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.956 [javac] ^
#16 4.956 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:137: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.956 [javac] reader = c[i].newInstance();
#16 4.956 [javac] ^
#16 4.956 [javac] where T is a type-variable:
#16 4.956 [javac] T extends Object declared in class Class
#16 4.956 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.956 [javac] return getReader().getCoreMetadataList();
#16 4.956 [javac] ^
#16 4.956 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.957 [javac] return getReader().getCoreIndex();
#16 4.957 [javac] ^
#16 4.957 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.957 [javac] getReader().setCoreIndex(no);
#16 4.957 [javac] ^
#16 4.957 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.957 [javac] return getReader().seriesToCoreIndex(series);
#16 4.957 [javac] ^
#16 4.957 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.957 [javac] return getReader().coreIndexToSeries(index);
#16 4.957 [javac] ^
#16 4.957 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageWriter.java:124: warning: [deprecation] newInstance() in Class has been deprecated
#16 4.957 [javac] writer = c[i].newInstance();
#16 4.957 [javac] ^
#16 4.957 [javac] where T is a type-variable:
#16 4.957 [javac] T extends Object declared in class Class
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.058 [javac] public void setCoreIndex(int no) {
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.058 [javac] public int getCoreIndex() {
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.058 [javac] public int coreIndexToSeries(int index) {
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.058 [javac] public int seriesToCoreIndex(int series) {
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.058 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.058 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.058 [javac] ^
#16 5.058 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.058 [javac] return reader.getCoreIndex();
#16 5.059 [javac] ^
#16 5.059 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.059 [javac] reader.setCoreIndex(no);
#16 5.059 [javac] ^
#16 5.059 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.059 [javac] return reader.seriesToCoreIndex(series);
#16 5.059 [javac] ^
#16 5.060 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.060 [javac] return reader.coreIndexToSeries(index);
#16 5.060 [javac] ^
#16 5.060 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:726: warning: [deprecation] newInstance() in Class has been deprecated
#16 5.060 [javac] childCopy = c.newInstance();
#16 5.060 [javac] ^
#16 5.060 [javac] where T is a type-variable:
#16 5.060 [javac] T extends Object declared in class Class
#16 5.060 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/WriterWrapper.java:454: warning: [deprecation] newInstance() in Class has been deprecated
#16 5.060 [javac] childCopy = (IFormatWriter) c.newInstance();
#16 5.060 [javac] ^
#16 5.060 [javac] where T is a type-variable:
#16 5.060 [javac] T extends Object declared in class Class
#16 5.251 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.251 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.251 [javac] 40 warnings
#16 5.252
#16 5.252 formats-api.jar:
#16 5.252 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.276 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.306 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 5.310 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 5.313 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 5.314 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.316 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.318
#16 5.318 deps-turbojpeg:
#16 5.318
#16 5.318 jar-turbojpeg:
#16 5.417 [echo] isSnapshot = true
#16 5.597
#16 5.597 init-title:
#16 5.597 [echo] ----------=========== turbojpeg ===========----------
#16 5.597
#16 5.597 init-timestamp:
#16 5.598
#16 5.598 init:
#16 5.598
#16 5.598 copy-resources:
#16 5.598 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.599
#16 5.599 compile:
#16 5.609 [resolver:resolve] Resolving artifacts
#16 5.613 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.815 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.416 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 6.416 [javac] protected void finalize() throws Throwable {
#16 6.416 [javac] ^
#16 6.416 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 6.416 [javac] super.finalize();
#16 6.416 [javac] ^
#16 6.481 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 6.481 [javac] protected void finalize() throws Throwable {
#16 6.482 [javac] ^
#16 6.482 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 6.482 [javac] super.finalize();
#16 6.482 [javac] ^
#16 6.482 [javac] 5 warnings
#16 6.482
#16 6.482 jar:
#16 6.487 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.670 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.677 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.681 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.683 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.686 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.687
#16 6.687 deps-formats-bsd:
#16 6.687
#16 6.687 jar-formats-bsd:
#16 6.785 [echo] isSnapshot = true
#16 6.937
#16 6.937 init-title:
#16 6.937 [echo] ----------=========== formats-bsd ===========----------
#16 6.938
#16 6.938 init-timestamp:
#16 6.938
#16 6.938 init:
#16 6.938
#16 6.938 copy-resources:
#16 6.938 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.941 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.942
#16 6.942 compile:
#16 7.151 [resolver:resolve] Resolving artifacts
#16 7.181 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.489 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.490 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.490 [javac] import loci.common.ReflectedUniverse;
#16 8.490 [javac] ^
#16 8.891 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.891 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.891 [javac] ^
#16 8.891 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.891 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.891 [javac] ^
#16 8.891 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.891 [javac] int n = reader.getCoreMetadataList().size();
#16 8.891 [javac] ^
#16 8.891 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.891 [javac] reader.setCoreIndex(coreIndex);
#16 8.891 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.892 [javac] int n = reader.getCoreMetadataList().size();
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.892 [javac] int n = reader.getCoreMetadataList().size();
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.892 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.892 [javac] int n = reader.getCoreMetadataList().size();
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.892 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.892 [javac] int n = reader.getCoreMetadataList().size();
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.892 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.892 [javac] ^
#16 8.892 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.892 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.893 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.893 [javac] ^
#16 8.893 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.893 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.893 [javac] ^
#16 9.094 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.094 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 9.094 [javac] ^
#16 9.194 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.194 [javac] BitWriter out = new BitWriter();
#16 9.194 [javac] ^
#16 9.194 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.194 [javac] BitWriter out = new BitWriter();
#16 9.194 [javac] ^
#16 9.295 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.295 [javac] return new Double(v);
#16 9.295 [javac] ^
#16 9.896 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.896 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.896 [javac] ^
#16 9.896 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.896 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.896 [javac] ^
#16 9.896 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.896 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.896 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.10 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 10.10 [javac] ^
#16 10.30 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.30 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.30 [javac] ^
#16 10.40 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.41 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.41 [javac] ^
#16 10.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.50 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.50 [javac] ^
#16 10.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.50 [javac] protected ReflectedUniverse r;
#16 10.50 [javac] ^
#16 10.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.50 [javac] r = new ReflectedUniverse();
#16 10.50 [javac] ^
#16 10.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.50 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.50 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.60 [javac] ^
#16 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.60 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.60 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.70 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.70 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.70 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.70 [javac] ^
#16 10.70 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.70 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.70 [javac] 46 warnings
#16 10.75
#16 10.75 formats-bsd.jar:
#16 10.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.86 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.87 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.87 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.87 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.87
#16 10.87 deps-formats-gpl:
#16 10.87
#16 10.87 jar-formats-gpl:
#16 10.97 [echo] isSnapshot = true
#16 11.13
#16 11.13 init-title:
#16 11.13 [echo] ----------=========== formats-gpl ===========----------
#16 11.13
#16 11.13 init-timestamp:
#16 11.13
#16 11.13 init:
#16 11.13
#16 11.13 copy-resources:
#16 11.13 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.14 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.14
#16 11.14 compile:
#16 11.53 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.77 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.82 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 12.26 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.27 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.28 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.31 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.44 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.58 [resolver:resolve] Resolving artifacts
#16 12.59 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.59 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.63 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.63 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.66 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.66 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.08 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.09 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.10 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.41 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.61 [javac] import loci.formats.codec.BitWriter;
#16 14.61 [javac] ^
#16 14.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.61 [javac] import loci.formats.codec.BitWriter;
#16 14.61 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:155: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] xSize = new Double(token);
#16 14.91 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:158: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] ySize = new Double(token);
#16 14.91 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:161: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] zSize = new Double(token);
#16 14.91 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:172: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] xLength = new Double(token);
#16 14.91 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:175: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] yLength = new Double(token);
#16 14.91 [javac] ^
#16 14.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:178: warning: [deprecation] Double(String) in Double has been deprecated
#16 14.91 [javac] zLength = new Double(token);
#16 14.91 [javac] ^
#16 15.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:241: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.01 [javac] new ElectricPotential(new Double(voltage), UNITS.VOLT), 0, 0);
#16 15.01 [javac] ^
#16 15.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:256: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.01 [javac] new Double(magnification), 0, 0);
#16 15.01 [javac] ^
#16 15.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:260: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.01 [javac] store.setObjectiveWorkingDistance(new Length(new Double(workingDistance), UNITS.MICROMETER), 0, 0);
#16 15.01 [javac] ^
#16 15.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:463: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.01 [javac] Double magnification = new Double(mag);
#16 15.01 [javac] ^
#16 15.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:467: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.01 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 15.01 [javac] ^
#16 15.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:765: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.11 [javac] store.setRectangleX(new Double(cols[2]), i - firstRow, 0);
#16 15.11 [javac] ^
#16 15.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:766: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.11 [javac] store.setRectangleY(new Double(cols[3]), i - firstRow, 0);
#16 15.11 [javac] ^
#16 15.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:767: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.11 [javac] store.setRectangleWidth(new Double(cols[4]), i - firstRow, 0);
#16 15.11 [javac] ^
#16 15.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:768: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] store.setRectangleHeight(new Double(cols[5]), i - firstRow, 0);
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:403: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] try { exp = new Double(exposure); }
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:847: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.12 [javac] if (!tiles.containsKey(new Integer(value))) {
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:851: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.12 [javac] int v = tiles.get(new Integer(value)).intValue() + 1;
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.12 [javac] tiles.put(new Integer(value), new Integer(v));
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 15.12 [javac] tiles.put(new Integer(value), new Integer(v));
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:912: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] Double wave = new Double(value);
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:921: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.12 [javac] Double wave = new Double(Double.parseDouble(value));
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:934: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 15.12 [javac] if (exposureTime.get(new Integer(cIndex)) == null) {
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:936: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 15.12 [javac] exposureTime.put(new Integer(cIndex), String.valueOf(exp));
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:963: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] store.setObjectiveLensNA(new Double(value), 0, 0);
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:974: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:981: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] store.setObjectiveWorkingDistance(new Length(new Double(value), UNITS.MICROMETER), 0, 0);
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1007: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] detectorGain.put(cIndex, new Double(value));
#16 15.12 [javac] ^
#16 15.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1010: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.12 [javac] detectorOffset.put(cIndex, new Double(value));
#16 15.12 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:505: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.32 [javac] store.setObjectiveLensNA(new Double(lens), 0, 0);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:506: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.32 [javac] store.setObjectiveNominalMagnification(new Double(magFactor), 0, 0);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:676: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] offset.add(new Double(value));
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:687: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] gain.add(new Double(value));
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:701: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] Double pixelSize = new Double(values[2]);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:725: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] Double pixelSize = new Double(values[3]);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:733: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] Double pixelSize = new Double(values[3]);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:757: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] Double sizeZ = new Double(values[14]);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:854: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] store.setDetectorOffset(new Double(values[i * 3]), 0, i);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:855: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] store.setDetectorGain(new Double(values[i * 3 + 1]), 0, i);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:248: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] gain = new Double(value);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:251: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] exposureTime = new Double(value);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:290: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] physicalSizeX = new Double(attrValue) / getSizeX();
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:294: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.32 [javac] physicalSizeY = new Double(attrValue) / getSizeY();
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:219: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.32 [javac] i1 = new Integer(s1);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:224: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.32 [javac] i2 = new Integer(s2);
#16 15.32 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1749: warning: [deprecation] Boolean(boolean) in Boolean has been deprecated
#16 15.52 [javac] value = new Boolean(vsi.readBoolean()).toString();
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1887: warning: [deprecation] Long(String) in Long has been deprecated
#16 15.52 [javac] pyramid.exposureTimes.add(new Long(value));
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1890: warning: [deprecation] Long(String) in Long has been deprecated
#16 15.52 [javac] pyramid.defaultExposureTime = new Long(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1894: warning: [deprecation] Long(String) in Long has been deprecated
#16 15.52 [javac] pyramid.acquisitionTime = new Long(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1897: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.refractiveIndex = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1900: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.magnification = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1903: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.numericalAperture = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1906: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.workingDistance = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1912: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.52 [javac] pyramid.objectiveTypes.add(new Integer(value));
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1915: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.52 [javac] pyramid.bitDepth = new Integer(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1918: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.52 [javac] pyramid.binningX = new Integer(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1921: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.52 [javac] pyramid.binningY = new Integer(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1924: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.gain = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1927: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.offset = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1930: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.redGain = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1933: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.greenGain = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1936: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.blueGain = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1939: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.redOffset = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1942: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.greenOffset = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1945: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.blueOffset = new Double(value);
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1949: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.channelWavelengths.add(new Double(value));
#16 15.52 [javac] ^
#16 15.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1952: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.52 [javac] pyramid.workingDistance = new Double(value);
#16 15.52 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:152: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 15.62 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:603: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 15.62 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:636: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 15.62 [javac] fieldMap[row][col] = new Boolean(mapping[col].trim()).booleanValue();
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:640: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 15.62 [javac] doChannels = new Boolean(value.toLowerCase());
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:781: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double posX = new Double(axes[0]);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:782: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double posY = new Double(axes[1]);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:802: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double xSize = new Double(value.substring(0, s).trim());
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:803: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double ySize = new Double(value.substring(s + 1, end).trim());
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:830: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double gain = new Double(token.replaceAll("gain ", ""));
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:857: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double emission = new Double(em);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:858: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] Double excitation = new Double(ex);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:539: warning: [deprecation] Long(String) in Long has been deprecated
#16 15.62 [javac] Long color = new Long(value);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:551: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.deltaT = new Double(value);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:557: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.emWavelength = new Double(value);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:560: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.exWavelength = new Double(value);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:564: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.sizeX = correctUnits(new Double(value), unit);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:568: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.sizeY = correctUnits(new Double(value), unit);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:572: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.positionX = correctUnits(new Double(value), unit);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:576: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.positionY = correctUnits(new Double(value), unit);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:580: warning: [deprecation] Double(String) in Double has been deprecated
#16 15.62 [javac] p.positionZ = correctUnits(new Double(value), unit);
#16 15.62 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:728: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.72 [javac] plateRows = new Integer(value);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:731: warning: [deprecation] Integer(String) in Integer has been deprecated
#16 15.72 [javac] plateColumns = new Integer(value);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:862: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] Double x = new Double(pixX);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:867: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] Double y = new Double(pixY);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:872: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] Double z = new Double(pixZ);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:951: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] expTime[coords[1]] = new Double(hdr.expTime);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:956: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] new Time(new Double(hdr.timeStampSeconds), UNITS.SECOND), series, i);
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:970: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] FormatTools.getEmissionWavelength(new Double(waves[w]));
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:972: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] FormatTools.getExcitationWavelength(new Double(hdr.exWavelen));
#16 15.72 [javac] ^
#16 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:980: warning: [deprecation] Double(double) in Double has been deprecated
#16 15.72 [javac] if (ndFilters[w] == null) ndFilters[w] = new Double(hdr.ndFilter);
#16 15.72 [javac] ^
#16 17.51 [javac] Note: Some input files additionally use or override a deprecated API.
#16 17.51 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.51 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.51 [javac] 100 warnings
#16 17.51
#16 17.51 formats-gpl.jar:
#16 17.52 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.65 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.71 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.71 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.71
#16 17.71 deps-bio-formats-plugins:
#16 17.71
#16 17.71 jar-bio-formats-plugins:
#16 17.81 [echo] isSnapshot = true
#16 17.96
#16 17.96 init-title:
#16 17.96 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.96
#16 17.96 init-timestamp:
#16 17.96
#16 17.96 init:
#16 17.96
#16 17.96 copy-resources:
#16 17.96 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.96 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.96
#16 17.96 compile:
#16 18.22 [resolver:resolve] Resolving artifacts
#16 18.24 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.54 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.34 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.34 [javac] import loci.common.ReflectedUniverse;
#16 19.34 [javac] ^
#16 19.34 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.34 [javac] import loci.common.ReflectedUniverse;
#16 19.34 [javac] ^
#16 19.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.75 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.75 [javac] ^
#16 19.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.85 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.85 [javac] ^
#16 19.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.85 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.85 [javac] ^
#16 20.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.05 [javac] ^
#16 20.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.05 [javac] ^
#16 20.35 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.35 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.35 [javac] 8 warnings
#16 20.41
#16 20.41 bio-formats-plugins.jar:
#16 20.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.44 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.45 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.45 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.46 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.46
#16 20.46 deps-bio-formats-tools:
#16 20.46
#16 20.46 jar-bio-formats-tools:
#16 20.55 [echo] isSnapshot = true
#16 20.71
#16 20.71 init-title:
#16 20.71 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.71
#16 20.71 init-timestamp:
#16 20.71
#16 20.71 init:
#16 20.71
#16 20.71 copy-resources:
#16 20.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.71
#16 20.71 compile:
#16 20.97 [resolver:resolve] Resolving artifacts
#16 20.99 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.29 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.09 [javac] /bio-formats-build/bioformats/components/bio-formats-tools/src/loci/formats/tools/ImageInfo.java:370: warning: [deprecation] newInstance() in Class has been deprecated
#16 22.09 [javac] reader = (IFormatReader) c.newInstance();
#16 22.09 [javac] ^
#16 22.09 [javac] where T is a type-variable:
#16 22.09 [javac] T extends Object declared in class Class
#16 22.28 [javac] 2 warnings
#16 22.28
#16 22.28 bio-formats-tools.jar:
#16 22.28 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.29 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.30 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.30 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.30 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.30
#16 22.30 deps-tests:
#16 22.30
#16 22.30 jar-tests:
#16 22.40 [echo] isSnapshot = true
#16 22.57
#16 22.57 init-title:
#16 22.57 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.57
#16 22.57 init-timestamp:
#16 22.57
#16 22.57 init:
#16 22.57
#16 22.57 copy-resources:
#16 22.57 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.57
#16 22.57 compile:
#16 22.86 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.93 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.95 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.37 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.80 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.86 [resolver:resolve] Resolving artifacts
#16 23.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.91 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.93 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.34 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.72 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.72 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.03 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:205: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(test.trim()).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:210: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(globalTable.get(HAS_VALID_XML)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:264: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(currentTable.get(IS_INTERLEAVED)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:268: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(currentTable.get(IS_INDEXED)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:272: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(currentTable.get(IS_FALSE_COLOR)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:276: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(currentTable.get(IS_RGB)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:292: warning: [deprecation] Boolean(String) in Boolean has been deprecated
#16 25.93 [javac] return new Boolean(currentTable.get(IS_LITTLE_ENDIAN)).booleanValue();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:327: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return timeIncrement == null ? null : FormatTools.getTime(new Double(timeIncrement), timeIncrementUnits);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:354: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return exposure == null ? null : FormatTools.getTime(new Double(exposure), exposureUnits);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:363: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return deltaT == null ? null : new Double(deltaT);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:368: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return pos == null ? null : new Double(pos);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:377: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return pos == null ? null : new Double(pos);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:386: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return pos == null ? null : new Double(pos);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:397: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), emissionUnits);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:408: warning: [deprecation] Double(String) in Double has been deprecated
#16 25.93 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), excitationUnits);
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.93 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.93 [javac] reader.setCoreIndex(index);
#16 25.93 [javac] ^
#16 26.03 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:831: warning: [deprecation] Double(String) in Double has been deprecated
#16 26.03 [javac] return physicalSize == null ? null : UnitsLength.create(new Double(physicalSize), unit);
#16 26.03 [javac] ^
#16 26.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.23 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.23 [javac] ^
#16 26.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.23 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.23 [javac] ^
#16 26.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:113: warning: [deprecation] newInstance() in Class has been deprecated
#16 26.33 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 26.33 [javac] ^
#16 26.33 [javac] where T is a type-variable:
#16 26.33 [javac] T extends Object declared in class Class
#16 26.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:122: warning: [deprecation] newInstance() in Class has been deprecated
#16 26.33 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 26.33 [javac] ^
#16 26.33 [javac] where T is a type-variable:
#16 26.33 [javac] T extends Object declared in class Class
#16 26.43 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.43 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.43 [javac] ^
#16 26.43 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.43 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.43 [javac] ^
#16 26.53 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.53 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.53 [javac] 25 warnings
#16 26.54
#16 26.54 tests.jar:
#16 26.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.56 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.56 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.58 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.58 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.58
#16 26.58 jars:
#16 26.58
#16 26.58 copy-jars:
#16 26.58
#16 26.58 deps-formats-api:
#16 26.63 [echo] isSnapshot = true
#16 26.67
#16 26.67 install-pom:
#16 26.82 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.82 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.82 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.83
#16 26.83 jar-formats-api:
#16 26.91 [echo] isSnapshot = true
#16 27.10
#16 27.10 init-title:
#16 27.10 [echo] ----------=========== formats-api ===========----------
#16 27.10
#16 27.10 init-timestamp:
#16 27.10
#16 27.10 init:
#16 27.10
#16 27.10 copy-resources:
#16 27.11
#16 27.11 compile:
#16 27.24 [resolver:resolve] Resolving artifacts
#16 27.25
#16 27.25 formats-api.jar:
#16 27.27 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.27 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.27 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.28
#16 27.28 deps-turbojpeg:
#16 27.28
#16 27.28 jar-turbojpeg:
#16 27.36 [echo] isSnapshot = true
#16 27.50
#16 27.50 init-title:
#16 27.50 [echo] ----------=========== turbojpeg ===========----------
#16 27.50
#16 27.50 init-timestamp:
#16 27.50
#16 27.50 init:
#16 27.50
#16 27.50 copy-resources:
#16 27.50
#16 27.50 compile:
#16 27.51 [resolver:resolve] Resolving artifacts
#16 27.51
#16 27.51 jar:
#16 27.52 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.52 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.53 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.53 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.53
#16 27.53 deps-formats-bsd:
#16 27.53
#16 27.53 jar-formats-bsd:
#16 27.61 [echo] isSnapshot = true
#16 27.75
#16 27.75 init-title:
#16 27.75 [echo] ----------=========== formats-bsd ===========----------
#16 27.75
#16 27.75 init-timestamp:
#16 27.75
#16 27.75 init:
#16 27.75
#16 27.75 copy-resources:
#16 27.76
#16 27.76 compile:
#16 27.94 [resolver:resolve] Resolving artifacts
#16 27.96
#16 27.96 formats-bsd.jar:
#16 28.00 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 28.00 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 28.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 28.00 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.00 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.00
#16 28.00 deps-formats-gpl:
#16 28.00
#16 28.00 jar-formats-gpl:
#16 28.09 [echo] isSnapshot = true
#16 28.23
#16 28.23 init-title:
#16 28.23 [echo] ----------=========== formats-gpl ===========----------
#16 28.23
#16 28.23 init-timestamp:
#16 28.23
#16 28.23 init:
#16 28.23
#16 28.23 copy-resources:
#16 28.23
#16 28.23 compile:
#16 28.46 [resolver:resolve] Resolving artifacts
#16 28.48
#16 28.48 formats-gpl.jar:
#16 28.51 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.52 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.52 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.52
#16 28.52 deps-bio-formats-plugins:
#16 28.52
#16 28.52 jar-bio-formats-plugins:
#16 28.61 [echo] isSnapshot = true
#16 28.77
#16 28.77 init-title:
#16 28.77 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.77
#16 28.77 init-timestamp:
#16 28.77
#16 28.77 init:
#16 28.77
#16 28.77 copy-resources:
#16 28.77
#16 28.77 compile:
#16 29.03 [resolver:resolve] Resolving artifacts
#16 29.05
#16 29.05 bio-formats-plugins.jar:
#16 29.06 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 29.07 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 29.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 29.07 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.07 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.07
#16 29.07 deps-bio-formats-tools:
#16 29.07
#16 29.07 jar-bio-formats-tools:
#16 29.16 [echo] isSnapshot = true
#16 29.32
#16 29.32 init-title:
#16 29.32 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.32
#16 29.32 init-timestamp:
#16 29.32
#16 29.32 init:
#16 29.32
#16 29.32 copy-resources:
#16 29.32
#16 29.32 compile:
#16 29.58 [resolver:resolve] Resolving artifacts
#16 29.59
#16 29.59 bio-formats-tools.jar:
#16 29.59 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.60 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.60 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.60 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.61
#16 29.61 deps-tests:
#16 29.61
#16 29.61 jar-tests:
#16 29.70 [echo] isSnapshot = true
#16 29.85
#16 29.85 init-title:
#16 29.85 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.85
#16 29.85 init-timestamp:
#16 29.85
#16 29.85 init:
#16 29.85
#16 29.85 copy-resources:
#16 29.85
#16 29.85 compile:
#16 30.11 [resolver:resolve] Resolving artifacts
#16 30.12
#16 30.12 tests.jar:
#16 30.13 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 30.14 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 30.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 30.14 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 30.14 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.14
#16 30.14 jars:
#16 30.14
#16 30.14 tools:
#16 30.14 [echo] ----------=========== bioformats_package ===========----------
#16 30.23 [echo] isSnapshot = true
#16 30.39
#16 30.39 init-timestamp:
#16 30.39
#16 30.39 bundle:
#16 30.66 [resolver:resolve] Resolving artifacts
#16 30.67 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.73 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.75 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.76 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.82 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.84 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.14 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.27 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.07 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.20 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.21 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.23 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.47 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.51 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.51 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.07 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.14 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.26 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.29 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.66 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.90 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.91 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.37 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.50 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.55 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.56 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.57 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.73 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.75 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.76 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.77 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.77 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.21 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.33 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.73 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.55 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.09 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 42.10 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 42.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 42.18 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 42.18 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 42.18
#16 42.18 BUILD SUCCESSFUL
#16 42.18 Total time: 40 seconds
#16 DONE 43.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:479bca4977f50bc5c9c67401e8c1533f1e19a18f0323d1dd9f4971f159b7ae38 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
Finished: SUCCESS
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