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Full Log#14 432.9 Progress (4): 1.7/2.3 MB | 205 kB | 45 kB | 5.8 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar
#14 432.9 Progress (4): 1.7/2.3 MB | 205 kB | 45 kB | 5.8 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.jar (205 kB at 608 kB/s)
#14 432.9 Progress (3): 1.8/2.3 MB | 45 kB | 5.8 kB
Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar
#14 432.9 Progress (3): 1.8/2.3 MB | 45 kB | 5.8 kB
Downloaded from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar (45 kB at 132 kB/s)
#14 432.9 Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
#14 432.9 Progress (2): 1.8/2.3 MB | 5.8 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar (5.8 kB at 17 kB/s)
#14 432.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar (4.5 kB at 12 kB/s)
#14 432.9 Progress (4): 2.3 MB | 246/378 kB | 150/424 kB | 62 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
#14 432.9 Progress (4): 2.3 MB | 254/378 kB | 154/424 kB | 62 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar (2.3 MB at 6.1 MB/s)
#14 432.9 Progress (3): 332/378 kB | 228/424 kB | 62 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar
#14 432.9 Progress (3): 336/378 kB | 236/424 kB | 62 kB
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#14 432.9 Progress (2): 365/378 kB | 256/424 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
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#14 432.9 Progress (3): 424 kB | 172/435 kB | 106/290 kB
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#14 432.9 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar (424 kB at 1.1 MB/s)
#14 432.9 Progress (2): 172/435 kB | 111/290 kB
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#14 432.9 Progress (2): 176/435 kB | 111/290 kB
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#14 433.0 Progress (4): 435 kB | 290 kB | 66/154 kB | 57/632 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
#14 433.0 Progress (4): 435 kB | 290 kB | 70/154 kB | 61/632 kB
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#14 433.0 Progress (3): 435 kB | 98/154 kB | 102/632 kB
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#14 433.0 Progress (3): 435 kB | 102/154 kB | 111/632 kB
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#14 433.0 Progress (2): 154 kB | 303/632 kB
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#14 433.0 Progress (2): 154 kB | 307/632 kB
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#14 433.0 Progress (2): 632 kB | 180/263 kB
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#14 433.1 Progress (4): 371/392 kB | 208 kB | 126/571 kB | 47 kB
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#14 433.1 Progress (4): 375/392 kB | 208 kB | 126/571 kB | 47 kB
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#14 433.1 Progress (3): 392 kB | 208 kB | 232/571 kB
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#14 433.1 Progress (3): 392 kB | 208 kB | 237/571 kB
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#14 433.1 Progress (2): 392 kB | 380/571 kB
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#14 433.1 Progress (2): 392 kB | 384/571 kB
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#14 433.1 Progress (2): 437/571 kB | 4.1/19 kB
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#14 433.1 Progress (2): 445/571 kB | 8.2/19 kB
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#14 433.1 Progress (4): 571 kB | 28 kB | 22 kB | 4.1/153 kB
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#14 433.1 Progress (3): 571 kB | 22 kB | 86/153 kB
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#14 433.1 Progress (2): 22 kB | 119/153 kB
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#14 433.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 272 kB/s)
#14 433.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
#14 433.3 Progress (1): 2.6 kB
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#14 433.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
#14 433.4 Progress (1): 2.2 kB
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#14 433.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.13.0/maven-scm-providers-1.13.0.pom
#14 433.4 Progress (1): 3.6 kB
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#14 433.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.13.0/maven-scm-1.13.0.pom
#14 433.4 Progress (1): 4.1/26 kB
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#14 433.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.13.0/maven-scm-provider-git-commons-1.13.0.pom
#14 433.5 Progress (1): 2.7 kB
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#14 433.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.13.0/maven-scm-api-1.13.0.pom
#14 433.5 Progress (1): 1.6 kB
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#14 433.5 [output clipped, log limit 2MiB reached]
#14 540.3 SLF4J: No SLF4J providers were found.
#14 540.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 540.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 547.3s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.917 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.327 [echo] isSnapshot = true
#16 3.453
#16 3.453 copy-jars:
#16 3.453
#16 3.453 deps-formats-api:
#16 3.538 [echo] isSnapshot = true
#16 3.599
#16 3.599 install-pom:
#16 3.784 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 3.850 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 3.855 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.857
#16 3.857 jar-formats-api:
#16 3.982 [echo] isSnapshot = true
#16 4.171
#16 4.171 init-title:
#16 4.171 [echo] ----------=========== formats-api ===========----------
#16 4.171
#16 4.171 init-timestamp:
#16 4.177
#16 4.177 init:
#16 4.177
#16 4.177 copy-resources:
#16 4.178 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.192 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.195
#16 4.195 compile:
#16 4.381 [resolver:resolve] Resolving artifacts
#16 4.410 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.625 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.226 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.226 [javac] import loci.common.ReflectedUniverse;
#16 5.226 [javac] ^
#16 5.426 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.426 [javac] int currentIndex = r.getCoreIndex();
#16 5.426 [javac] ^
#16 5.426 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.427 [javac] r.setCoreIndex(coreIndex);
#16 5.427 [javac] ^
#16 5.427 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.427 [javac] r.setCoreIndex(currentIndex);
#16 5.427 [javac] ^
#16 5.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.627 [javac] public void setCoreIndex(int no) {
#16 5.627 [javac] ^
#16 5.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.627 [javac] public int getCoreIndex() {
#16 5.628 [javac] ^
#16 5.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.628 [javac] public int coreIndexToSeries(int index)
#16 5.628 [javac] ^
#16 5.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.628 [javac] public int seriesToCoreIndex(int series)
#16 5.628 [javac] ^
#16 5.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.628 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.628 [javac] ^
#16 5.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.628 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.628 [javac] ^
#16 5.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.629 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.629 [javac] ^
#16 5.629 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.629 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.629 [javac] ^
#16 5.629 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.629 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.629 [javac] ^
#16 5.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.729 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.730 [javac] ^
#16 5.730 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.730 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.730 [javac] ^
#16 5.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.830 [javac] public void setCoreIndex(int no) {
#16 5.830 [javac] ^
#16 5.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.830 [javac] public int getCoreIndex() {
#16 5.830 [javac] ^
#16 5.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.831 [javac] public int coreIndexToSeries(int index) {
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.831 [javac] public int seriesToCoreIndex(int series) {
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.831 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.831 [javac] return getReader().getCoreMetadataList();
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.831 [javac] return getReader().getCoreIndex();
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.831 [javac] getReader().setCoreIndex(no);
#16 5.831 [javac] ^
#16 5.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.831 [javac] return getReader().seriesToCoreIndex(series);
#16 5.832 [javac] ^
#16 5.832 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.832 [javac] return getReader().coreIndexToSeries(index);
#16 5.832 [javac] ^
#16 5.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.932 [javac] public void setCoreIndex(int no) {
#16 5.932 [javac] ^
#16 5.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.932 [javac] public int getCoreIndex() {
#16 5.932 [javac] ^
#16 5.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.932 [javac] public int coreIndexToSeries(int index) {
#16 5.932 [javac] ^
#16 5.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.932 [javac] public int seriesToCoreIndex(int series) {
#16 5.932 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.933 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.933 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.933 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.933 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.933 [javac] return reader.getCoreIndex();
#16 5.933 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.933 [javac] reader.setCoreIndex(no);
#16 5.933 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.933 [javac] return reader.seriesToCoreIndex(series);
#16 5.933 [javac] ^
#16 5.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.933 [javac] return reader.coreIndexToSeries(index);
#16 5.933 [javac] ^
#16 6.117 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.117 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.117 [javac] 36 warnings
#16 6.118
#16 6.118 formats-api.jar:
#16 6.118 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.142 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.177 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 6.181 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 6.183 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 6.185 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 6.187 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.189
#16 6.189 deps-turbojpeg:
#16 6.189
#16 6.189 jar-turbojpeg:
#16 6.294 [echo] isSnapshot = true
#16 6.472
#16 6.472 init-title:
#16 6.472 [echo] ----------=========== turbojpeg ===========----------
#16 6.472
#16 6.472 init-timestamp:
#16 6.473
#16 6.473 init:
#16 6.473
#16 6.473 copy-resources:
#16 6.473 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.475
#16 6.475 compile:
#16 6.484 [resolver:resolve] Resolving artifacts
#16 6.489 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.691 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.292 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.292 [javac] protected void finalize() throws Throwable {
#16 7.292 [javac] ^
#16 7.292 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.292 [javac] super.finalize();
#16 7.292 [javac] ^
#16 7.292 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.292 [javac] protected void finalize() throws Throwable {
#16 7.292 [javac] ^
#16 7.292 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.292 [javac] super.finalize();
#16 7.292 [javac] ^
#16 7.373 [javac] 5 warnings
#16 7.374
#16 7.374 jar:
#16 7.379 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.568 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 7.579 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 7.581 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 7.584 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 7.588 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.589
#16 7.589 deps-formats-bsd:
#16 7.589
#16 7.589 jar-formats-bsd:
#16 7.692 [echo] isSnapshot = true
#16 7.844
#16 7.844 init-title:
#16 7.844 [echo] ----------=========== formats-bsd ===========----------
#16 7.844
#16 7.844 init-timestamp:
#16 7.844
#16 7.844 init:
#16 7.844
#16 7.844 copy-resources:
#16 7.845 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.848 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.849
#16 7.849 compile:
#16 8.061 [resolver:resolve] Resolving artifacts
#16 8.089 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.399 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.399 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.400 [javac] import loci.common.ReflectedUniverse;
#16 9.400 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.800 [javac] core.size() != reader.getCoreMetadataList().size())
#16 9.800 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.800 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 9.800 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.800 [javac] int n = reader.getCoreMetadataList().size();
#16 9.800 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.800 [javac] reader.setCoreIndex(coreIndex);
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.801 [javac] int n = reader.getCoreMetadataList().size();
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.801 [javac] int n = reader.getCoreMetadataList().size();
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.801 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.801 [javac] int n = reader.getCoreMetadataList().size();
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.801 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.801 [javac] int n = reader.getCoreMetadataList().size();
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.801 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.801 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.801 [javac] ^
#16 9.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.802 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.802 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 9.902 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 9.902 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 9.902 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 9.902 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 9.902 [javac] ^
#16 9.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.902 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 9.902 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.10 [javac] BitWriter out = new BitWriter();
#16 10.10 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.10 [javac] BitWriter out = new BitWriter();
#16 10.10 [javac] ^
#16 10.20 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.20 [javac] return new Double(v);
#16 10.20 [javac] ^
#16 10.90 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.90 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 10.90 [javac] ^
#16 10.90 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.90 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 10.90 [javac] ^
#16 10.90 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.90 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 10.90 [javac] ^
#16 11.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.00 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.00 [javac] ^
#16 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.21 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.21 [javac] ^
#16 11.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.31 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.31 [javac] ^
#16 11.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.41 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.41 [javac] ^
#16 11.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.41 [javac] protected ReflectedUniverse r;
#16 11.41 [javac] ^
#16 11.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.41 [javac] r = new ReflectedUniverse();
#16 11.41 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 11.51 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 11.51 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.51 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.61 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.61 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.61 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.61 [javac] ^
#16 11.69 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.69 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.69 [javac] 50 warnings
#16 11.69
#16 11.69 formats-bsd.jar:
#16 11.70 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 11.82 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 11.82 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 11.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 11.83 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 11.83 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 11.83
#16 11.83 deps-formats-gpl:
#16 11.83
#16 11.83 jar-formats-gpl:
#16 11.93 [echo] isSnapshot = true
#16 12.08
#16 12.08 init-title:
#16 12.08 [echo] ----------=========== formats-gpl ===========----------
#16 12.08
#16 12.08 init-timestamp:
#16 12.08
#16 12.08 init:
#16 12.08
#16 12.08 copy-resources:
#16 12.08 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.09 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.09
#16 12.09 compile:
#16 12.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.74 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.32 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.62 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.64 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.65 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.93 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.98 [resolver:resolve] Resolving artifacts
#16 13.99 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.99 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 14.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 14.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 14.18 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.45 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.47 [javac] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 14.78 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.88 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.88 [javac] import loci.formats.codec.BitWriter;
#16 15.88 [javac] ^
#16 15.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.98 [javac] import loci.formats.codec.BitWriter;
#16 15.98 [javac] ^
#16 17.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 17.78 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 17.78 [javac] ^
#16 17.78 [javac] cast to Object for a varargs call
#16 17.78 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 17.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.78 [javac] BitWriter bits = null;
#16 17.78 [javac] ^
#16 17.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.78 [javac] bits = new BitWriter(planes[index].length / 8);
#16 17.78 [javac] ^
#16 18.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 18.18 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 18.18 [javac] ^
#16 18.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.58 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 18.58 [javac] ^
#16 18.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.58 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 18.58 [javac] ^
#16 18.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.78 [javac] Variable variable = group.findVariable(variableName);
#16 18.78 [javac] ^
#16 18.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.78 [javac] Variable variable = group.findVariable(variableName);
#16 18.78 [javac] ^
#16 18.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 18.78 [javac] List<Attribute> attributes = variable.getAttributes();
#16 18.78 [javac] ^
#16 18.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.84 [javac] String groupName = group.getName();
#16 18.84 [javac] ^
#16 18.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 18.84 [javac] List<Attribute> attributes = group.getAttributes();
#16 18.84 [javac] ^
#16 18.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.84 [javac] String variableName = variable.getName();
#16 18.84 [javac] ^
#16 18.84 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 18.84 [javac] Group nextParent = parent.findGroup(token);
#16 18.84 [javac] ^
#16 18.84 [javac] Note: Some input files use unchecked or unsafe operations.
#16 18.84 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.84 [javac] 16 warnings
#16 18.84
#16 18.84 formats-gpl.jar:
#16 18.85 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 19.01 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 19.02 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 19.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 19.02 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 19.02 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 19.03
#16 19.03 deps-bio-formats-plugins:
#16 19.03
#16 19.03 jar-bio-formats-plugins:
#16 19.13 [echo] isSnapshot = true
#16 19.28
#16 19.28 init-title:
#16 19.28 [echo] ----------=========== bio-formats_plugins ===========----------
#16 19.28
#16 19.28 init-timestamp:
#16 19.28
#16 19.28 init:
#16 19.28
#16 19.28 copy-resources:
#16 19.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.29 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.29
#16 19.29 compile:
#16 19.55 [resolver:resolve] Resolving artifacts
#16 19.57 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.88 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.58 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.58 [javac] import loci.common.ReflectedUniverse;
#16 20.58 [javac] ^
#16 20.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.68 [javac] import loci.common.ReflectedUniverse;
#16 20.68 [javac] ^
#16 21.08 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 21.08 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 21.08 [javac] ^
#16 21.18 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.18 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 21.18 [javac] ^
#16 21.18 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.18 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 21.18 [javac] ^
#16 21.28 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.28 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 21.28 [javac] ^
#16 21.28 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.28 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 21.28 [javac] ^
#16 21.68 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 21.68 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 21.68 [javac] 8 warnings
#16 21.69
#16 21.69 bio-formats-plugins.jar:
#16 21.70 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 21.73 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 21.73 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 21.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 21.75 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 21.75 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 21.75
#16 21.75 deps-bio-formats-tools:
#16 21.75
#16 21.75 jar-bio-formats-tools:
#16 21.85 [echo] isSnapshot = true
#16 22.01
#16 22.01 init-title:
#16 22.01 [echo] ----------=========== bio-formats-tools ===========----------
#16 22.01
#16 22.01 init-timestamp:
#16 22.01
#16 22.01 init:
#16 22.01
#16 22.01 copy-resources:
#16 22.01 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 22.01
#16 22.01 compile:
#16 22.26 [resolver:resolve] Resolving artifacts
#16 22.27 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 22.48 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.56 [javac] 1 warning
#16 23.56
#16 23.56 bio-formats-tools.jar:
#16 23.56 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 23.57 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 23.57 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 23.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 23.57 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 23.58 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 23.58
#16 23.58 deps-tests:
#16 23.58
#16 23.58 jar-tests:
#16 23.68 [echo] isSnapshot = true
#16 23.83
#16 23.83 init-title:
#16 23.84 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.84
#16 23.84 init-timestamp:
#16 23.84
#16 23.84 init:
#16 23.84
#16 23.84 copy-resources:
#16 23.84 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.84
#16 23.84 compile:
#16 24.16 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.68 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 25.12 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 25.13 [resolver:resolve] Resolving artifacts
#16 25.14 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.18 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.19 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.60 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.96 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.96 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 26.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 27.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.17 [javac] int index = unflattenedReader.getCoreIndex();
#16 27.17 [javac] ^
#16 27.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 27.17 [javac] reader.setCoreIndex(index);
#16 27.17 [javac] ^
#16 27.37 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2257: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.37 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.37 [javac] ^
#16 27.47 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2423: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.47 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.47 [javac] ^
#16 27.67 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.67 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.67 [javac] ^
#16 27.67 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.67 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.67 [javac] ^
#16 27.67 [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.67 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.67 [javac] 7 warnings
#16 27.75
#16 27.75 tests.jar:
#16 27.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.77 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 27.77 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 27.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 27.78 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.78 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.78
#16 27.78 jars:
#16 27.78
#16 27.78 copy-jars:
#16 27.78
#16 27.78 deps-formats-api:
#16 27.83 [echo] isSnapshot = true
#16 27.88
#16 27.88 install-pom:
#16 28.03 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 28.03 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.03 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 28.03
#16 28.03 jar-formats-api:
#16 28.13 [echo] isSnapshot = true
#16 28.32
#16 28.32 init-title:
#16 28.32 [echo] ----------=========== formats-api ===========----------
#16 28.32
#16 28.32 init-timestamp:
#16 28.32
#16 28.32 init:
#16 28.32
#16 28.32 copy-resources:
#16 28.32
#16 28.32 compile:
#16 28.46 [resolver:resolve] Resolving artifacts
#16 28.47
#16 28.47 formats-api.jar:
#16 28.49 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 28.49 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 28.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 28.49 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.50 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 28.50
#16 28.50 deps-turbojpeg:
#16 28.50
#16 28.50 jar-turbojpeg:
#16 28.59 [echo] isSnapshot = true
#16 28.73
#16 28.73 init-title:
#16 28.73 [echo] ----------=========== turbojpeg ===========----------
#16 28.73
#16 28.73 init-timestamp:
#16 28.73
#16 28.73 init:
#16 28.73
#16 28.73 copy-resources:
#16 28.73
#16 28.73 compile:
#16 28.74 [resolver:resolve] Resolving artifacts
#16 28.74
#16 28.74 jar:
#16 28.75 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 28.76 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 28.76 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 28.76 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.76 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 28.77
#16 28.77 deps-formats-bsd:
#16 28.77
#16 28.77 jar-formats-bsd:
#16 28.85 [echo] isSnapshot = true
#16 29.00
#16 29.00 init-title:
#16 29.00 [echo] ----------=========== formats-bsd ===========----------
#16 29.00
#16 29.00 init-timestamp:
#16 29.00
#16 29.00 init:
#16 29.00
#16 29.00 copy-resources:
#16 29.00
#16 29.00 compile:
#16 29.20 [resolver:resolve] Resolving artifacts
#16 29.22
#16 29.22 formats-bsd.jar:
#16 29.25 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 29.25 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 29.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 29.26 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 29.26 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 29.26
#16 29.26 deps-formats-gpl:
#16 29.26
#16 29.26 jar-formats-gpl:
#16 29.35 [echo] isSnapshot = true
#16 29.50
#16 29.50 init-title:
#16 29.50 [echo] ----------=========== formats-gpl ===========----------
#16 29.50
#16 29.50 init-timestamp:
#16 29.50
#16 29.50 init:
#16 29.50
#16 29.50 copy-resources:
#16 29.50
#16 29.50 compile:
#16 29.74 [resolver:resolve] Resolving artifacts
#16 29.77
#16 29.77 formats-gpl.jar:
#16 29.81 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 29.81 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 29.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 29.81 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 29.81 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 29.82
#16 29.82 deps-bio-formats-plugins:
#16 29.82
#16 29.82 jar-bio-formats-plugins:
#16 29.90 [echo] isSnapshot = true
#16 30.05
#16 30.05 init-title:
#16 30.05 [echo] ----------=========== bio-formats_plugins ===========----------
#16 30.05
#16 30.05 init-timestamp:
#16 30.05
#16 30.05 init:
#16 30.05
#16 30.05 copy-resources:
#16 30.05
#16 30.05 compile:
#16 30.30 [resolver:resolve] Resolving artifacts
#16 30.31
#16 30.31 bio-formats-plugins.jar:
#16 30.33 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 30.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 30.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 30.33 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 30.34 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 30.34
#16 30.34 deps-bio-formats-tools:
#16 30.34
#16 30.34 jar-bio-formats-tools:
#16 30.43 [echo] isSnapshot = true
#16 30.58
#16 30.58 init-title:
#16 30.58 [echo] ----------=========== bio-formats-tools ===========----------
#16 30.58
#16 30.58 init-timestamp:
#16 30.58
#16 30.58 init:
#16 30.58
#16 30.58 copy-resources:
#16 30.58
#16 30.58 compile:
#16 30.83 [resolver:resolve] Resolving artifacts
#16 30.84
#16 30.84 bio-formats-tools.jar:
#16 30.85 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 30.85 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 30.85 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 30.85 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 30.86 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 30.86
#16 30.86 deps-tests:
#16 30.86
#16 30.86 jar-tests:
#16 30.95 [echo] isSnapshot = true
#16 31.10
#16 31.10 init-title:
#16 31.10 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 31.10
#16 31.10 init-timestamp:
#16 31.10
#16 31.10 init:
#16 31.10
#16 31.10 copy-resources:
#16 31.11
#16 31.11 compile:
#16 31.36 [resolver:resolve] Resolving artifacts
#16 31.38
#16 31.38 tests.jar:
#16 31.39 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 31.39 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 31.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 31.39 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 31.40 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 31.40
#16 31.40 jars:
#16 31.40
#16 31.40 tools:
#16 31.40 [echo] ----------=========== bioformats_package ===========----------
#16 31.49 [echo] isSnapshot = true
#16 31.64
#16 31.64 init-timestamp:
#16 31.64
#16 31.64 bundle:
#16 31.90 [resolver:resolve] Resolving artifacts
#16 31.91 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.02 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.12 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.20 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.89 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.53 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.63 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.64 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.80 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.82 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.83 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.10 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.15 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.16 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.23 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.83 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.87 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.95 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.08 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.11 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.13 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.14 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.43 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.52 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/metakit-5.8.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.90 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.91 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.68 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.70 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.86 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.93 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.94 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.95 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.03 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.06 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.27 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.29 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.30 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.31 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.32 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.35 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.84 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.98 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.47 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 46.89 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.80 [resolver:install] Using default POM (ome:bioformats_package:8.2.0-SNAPSHOT)
#16 47.81 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.pom
#16 47.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.jar
#16 47.85 [resolver:install] Installing ome:bioformats_package:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 47.85 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 47.86
#16 47.86 BUILD SUCCESSFUL
#16 47.86 Total time: 46 seconds
#16 DONE 48.0s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:6c679b7c7100d47a249a5d7e752b5782cef874df38bb58a4bf22924b38174946 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.1s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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