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Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.jar (136 kB at 483 kB/s)
#14 377.0 Progress (3): 1.0/2.3 MB | 147 kB | 98/205 kB
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Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar
#14 377.0 Progress (3): 1.0/2.3 MB | 147 kB | 106/205 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-util/1.0.2.v20150114/aether-util-1.0.2.v20150114.jar (147 kB at 514 kB/s)
#14 377.0 Progress (3): 1.1/2.3 MB | 179/205 kB | 41/45 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar
#14 377.0 Progress (3): 1.1/2.3 MB | 179/205 kB | 45 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar (45 kB at 150 kB/s)
#14 377.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar
#14 377.0 Progress (3): 1.4/2.3 MB | 205 kB | 5.8 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.jar (205 kB at 685 kB/s)
#14 377.0 Progress (3): 1.4/2.3 MB | 5.8 kB | 4.1/378 kB
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Downloading from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar
#14 377.0 Progress (3): 1.4/2.3 MB | 5.8 kB | 12/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar (5.8 kB at 19 kB/s)
#14 377.0 Progress (2): 1.5/2.3 MB | 160/378 kB
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Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
#14 377.0 Progress (2): 1.6/2.3 MB | 164/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar (2.5 kB at 7.7 kB/s)
#14 377.0 Progress (4): 1.8/2.3 MB | 360/378 kB | 111/424 kB | 4.5 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
#14 377.0 Progress (4): 1.8/2.3 MB | 360/378 kB | 111/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar (4.5 kB at 13 kB/s)
#14 377.1 Progress (3): 2.1/2.3 MB | 378 kB | 287/424 kB
Progress (3): 2.1/2.3 MB | 378 kB | 291/424 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
#14 377.1 Progress (3): 2.1/2.3 MB | 378 kB | 291/424 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar (378 kB at 1.1 MB/s)
#14 377.1 Progress (3): 2.2/2.3 MB | 344/424 kB | 28/62 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar
#14 377.1 Progress (3): 2.2/2.3 MB | 348/424 kB | 28/62 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar (62 kB at 178 kB/s)
#14 377.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
#14 377.1 Progress (4): 2.3 MB | 424 kB | 53 kB | 37/435 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar (424 kB at 1.2 MB/s)
#14 377.1 Progress (3): 2.3 MB | 53 kB | 90/435 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/3.5.2/maven-archiver-3.5.2.jar
#14 377.1 Progress (3): 2.3 MB | 53 kB | 94/435 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar (2.3 MB at 6.3 MB/s)
#14 377.1 Progress (2): 53 kB | 152/435 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.3.3/maven-shared-utils-3.3.3.jar
#14 377.1 Progress (2): 53 kB | 156/435 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar (53 kB at 147 kB/s)
#14 377.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar
#14 377.1 Progress (1): 250/435 kB
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#14 377.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
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#14 377.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
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#14 377.1 [output clipped, log limit 2MiB reached]
#14 477.4 SLF4J: No SLF4J providers were found.
#14 477.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 477.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 487.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.422 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.825 [echo] isSnapshot = true
#16 0.925
#16 0.925 copy-jars:
#16 0.925
#16 0.925 deps-formats-api:
#16 1.006 [echo] isSnapshot = true
#16 1.060
#16 1.060 install-pom:
#16 1.228 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.251 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.255 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.256
#16 1.256 jar-formats-api:
#16 1.372 [echo] isSnapshot = true
#16 1.515
#16 1.515 init-title:
#16 1.515 [echo] ----------=========== formats-api ===========----------
#16 1.515
#16 1.515 init-timestamp:
#16 1.522
#16 1.522 init:
#16 1.522
#16 1.522 copy-resources:
#16 1.523 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.535 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.538
#16 1.538 compile:
#16 1.717 [resolver:resolve] Resolving artifacts
#16 1.742 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.005 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.706 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.706 [javac] import loci.common.ReflectedUniverse;
#16 2.706 [javac] ^
#16 2.907 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.907 [javac] int currentIndex = r.getCoreIndex();
#16 2.907 [javac] ^
#16 2.907 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.907 [javac] r.setCoreIndex(coreIndex);
#16 2.907 [javac] ^
#16 2.907 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.907 [javac] r.setCoreIndex(currentIndex);
#16 2.907 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.108 [javac] public void setCoreIndex(int no) {
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.108 [javac] public int getCoreIndex() {
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.108 [javac] public int coreIndexToSeries(int index)
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.108 [javac] public int seriesToCoreIndex(int series)
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.108 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.108 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.108 [javac] ^
#16 3.108 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.108 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.108 [javac] ^
#16 3.109 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.109 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.109 [javac] ^
#16 3.109 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.109 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.109 [javac] ^
#16 3.310 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.310 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.310 [javac] ^
#16 3.310 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.310 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.310 [javac] ^
#16 3.410 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.410 [javac] public void setCoreIndex(int no) {
#16 3.410 [javac] ^
#16 3.410 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.410 [javac] public int getCoreIndex() {
#16 3.411 [javac] ^
#16 3.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.411 [javac] public int coreIndexToSeries(int index) {
#16 3.411 [javac] ^
#16 3.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.411 [javac] public int seriesToCoreIndex(int series) {
#16 3.411 [javac] ^
#16 3.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.411 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.411 [javac] ^
#16 3.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.411 [javac] return getReader().getCoreMetadataList();
#16 3.411 [javac] ^
#16 3.411 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.412 [javac] return getReader().getCoreIndex();
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.412 [javac] getReader().setCoreIndex(no);
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.412 [javac] return getReader().seriesToCoreIndex(series);
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.412 [javac] return getReader().coreIndexToSeries(index);
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.412 [javac] public void setCoreIndex(int no) {
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.412 [javac] public int getCoreIndex() {
#16 3.412 [javac] ^
#16 3.412 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.413 [javac] public int coreIndexToSeries(int index) {
#16 3.413 [javac] ^
#16 3.413 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.413 [javac] public int seriesToCoreIndex(int series) {
#16 3.413 [javac] ^
#16 3.413 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.413 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.413 [javac] ^
#16 3.513 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.513 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.513 [javac] ^
#16 3.513 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.513 [javac] return reader.getCoreIndex();
#16 3.514 [javac] ^
#16 3.514 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.514 [javac] reader.setCoreIndex(no);
#16 3.514 [javac] ^
#16 3.514 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.514 [javac] return reader.seriesToCoreIndex(series);
#16 3.514 [javac] ^
#16 3.514 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.514 [javac] return reader.coreIndexToSeries(index);
#16 3.514 [javac] ^
#16 3.614 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.614 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.614 [javac] 36 warnings
#16 3.654
#16 3.654 formats-api.jar:
#16 3.654 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.677 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.707 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.710 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.714 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.715 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.718 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.719
#16 3.719 deps-turbojpeg:
#16 3.719
#16 3.719 jar-turbojpeg:
#16 3.819 [echo] isSnapshot = true
#16 3.974
#16 3.974 init-title:
#16 3.975 [echo] ----------=========== turbojpeg ===========----------
#16 3.975
#16 3.975 init-timestamp:
#16 3.975
#16 3.975 init:
#16 3.975
#16 3.975 copy-resources:
#16 3.975 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.977
#16 3.977 compile:
#16 3.986 [resolver:resolve] Resolving artifacts
#16 3.990 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.192 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.793 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 4.793 [javac] protected void finalize() throws Throwable {
#16 4.793 [javac] ^
#16 4.793 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 4.793 [javac] super.finalize();
#16 4.793 [javac] ^
#16 4.854 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 4.854 [javac] protected void finalize() throws Throwable {
#16 4.855 [javac] ^
#16 4.855 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 4.855 [javac] super.finalize();
#16 4.855 [javac] ^
#16 4.855 [javac] 5 warnings
#16 4.855
#16 4.855 jar:
#16 4.860 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.042 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 5.049 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 5.121 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 5.124 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.128 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.129
#16 5.129 deps-formats-bsd:
#16 5.129
#16 5.129 jar-formats-bsd:
#16 5.251 [echo] isSnapshot = true
#16 5.393
#16 5.393 init-title:
#16 5.393 [echo] ----------=========== formats-bsd ===========----------
#16 5.393
#16 5.393 init-timestamp:
#16 5.394
#16 5.394 init:
#16 5.394
#16 5.394 copy-resources:
#16 5.394 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.397 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.398
#16 5.398 compile:
#16 5.608 [resolver:resolve] Resolving artifacts
#16 5.635 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.843 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.944 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.944 [javac] import loci.common.ReflectedUniverse;
#16 6.944 [javac] ^
#16 7.245 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.245 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.245 [javac] ^
#16 7.245 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.245 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.245 [javac] ^
#16 7.345 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.345 [javac] int n = reader.getCoreMetadataList().size();
#16 7.345 [javac] ^
#16 7.345 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.345 [javac] reader.setCoreIndex(coreIndex);
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] int n = reader.getCoreMetadataList().size();
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] int n = reader.getCoreMetadataList().size();
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.346 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] int n = reader.getCoreMetadataList().size();
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.346 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] int n = reader.getCoreMetadataList().size();
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.346 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.346 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.346 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.346 [javac] ^
#16 7.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.346 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.347 [javac] ^
#16 7.347 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.347 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.347 [javac] ^
#16 7.347 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.347 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.347 [javac] ^
#16 7.347 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.347 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.347 [javac] ^
#16 7.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.447 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.447 [javac] ^
#16 7.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.547 [javac] BitWriter out = new BitWriter();
#16 7.547 [javac] ^
#16 7.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.547 [javac] BitWriter out = new BitWriter();
#16 7.547 [javac] ^
#16 7.748 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 7.748 [javac] return new Double(v);
#16 7.748 [javac] ^
#16 8.349 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.349 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.349 [javac] ^
#16 8.349 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.349 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.349 [javac] ^
#16 8.349 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.349 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.349 [javac] ^
#16 8.449 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.449 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.449 [javac] ^
#16 8.750 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.750 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.750 [javac] ^
#16 8.750 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.750 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.750 [javac] ^
#16 8.850 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.850 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.850 [javac] ^
#16 8.850 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.850 [javac] protected ReflectedUniverse r;
#16 8.850 [javac] ^
#16 8.850 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.851 [javac] r = new ReflectedUniverse();
#16 8.851 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 8.951 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.951 [javac] ^
#16 8.951 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.951 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.951 [javac] ^
#16 9.052 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.052 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.052 [javac] ^
#16 9.152 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.152 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.152 [javac] ^
#16 9.152 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.152 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.152 [javac] ^
#16 9.152 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.152 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.152 [javac] 46 warnings
#16 9.154
#16 9.154 formats-bsd.jar:
#16 9.162 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.270 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 9.274 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 9.278 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 9.280 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 9.282 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.283
#16 9.283 deps-formats-gpl:
#16 9.283
#16 9.283 jar-formats-gpl:
#16 9.373 [echo] isSnapshot = true
#16 9.512
#16 9.512 init-title:
#16 9.512 [echo] ----------=========== formats-gpl ===========----------
#16 9.512
#16 9.512 init-timestamp:
#16 9.513
#16 9.513 init:
#16 9.513
#16 9.513 copy-resources:
#16 9.513 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.514 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.515
#16 9.515 compile:
#16 9.887 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.10 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.13 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.57 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.59 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.75 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.80 [resolver:resolve] Resolving artifacts
#16 10.81 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.81 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.85 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.85 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.88 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
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#16 11.30 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.31 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.33 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.53 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.83 [javac] import loci.formats.codec.BitWriter;
#16 12.83 [javac] ^
#16 12.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.93 [javac] import loci.formats.codec.BitWriter;
#16 12.93 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:155: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] xSize = new Double(token);
#16 13.24 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:158: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] ySize = new Double(token);
#16 13.24 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:161: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] zSize = new Double(token);
#16 13.24 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:172: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] xLength = new Double(token);
#16 13.24 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:175: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] yLength = new Double(token);
#16 13.24 [javac] ^
#16 13.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:178: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.24 [javac] zLength = new Double(token);
#16 13.24 [javac] ^
#16 13.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:241: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.34 [javac] new ElectricPotential(new Double(voltage), UNITS.VOLT), 0, 0);
#16 13.34 [javac] ^
#16 13.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:256: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.34 [javac] new Double(magnification), 0, 0);
#16 13.34 [javac] ^
#16 13.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:260: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.34 [javac] store.setObjectiveWorkingDistance(new Length(new Double(workingDistance), UNITS.MICROMETER), 0, 0);
#16 13.34 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:463: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] Double magnification = new Double(mag);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:467: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:765: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] store.setRectangleX(new Double(cols[2]), i - firstRow, 0);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:766: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] store.setRectangleY(new Double(cols[3]), i - firstRow, 0);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:767: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] store.setRectangleWidth(new Double(cols[4]), i - firstRow, 0);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:768: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] store.setRectangleHeight(new Double(cols[5]), i - firstRow, 0);
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:403: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.44 [javac] try { exp = new Double(exposure); }
#16 13.44 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:847: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.54 [javac] if (!tiles.containsKey(new Integer(value))) {
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:851: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.54 [javac] int v = tiles.get(new Integer(value)).intValue() + 1;
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.54 [javac] tiles.put(new Integer(value), new Integer(v));
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.54 [javac] tiles.put(new Integer(value), new Integer(v));
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:912: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] Double wave = new Double(value);
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:921: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.54 [javac] Double wave = new Double(Double.parseDouble(value));
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:934: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.54 [javac] if (exposureTime.get(new Integer(cIndex)) == null) {
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:936: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.54 [javac] exposureTime.put(new Integer(cIndex), String.valueOf(exp));
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:963: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] store.setObjectiveLensNA(new Double(value), 0, 0);
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:974: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:981: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] store.setObjectiveWorkingDistance(new Length(new Double(value), UNITS.MICROMETER), 0, 0);
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1007: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] detectorGain.put(cIndex, new Double(value));
#16 13.54 [javac] ^
#16 13.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1010: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.54 [javac] detectorOffset.put(cIndex, new Double(value));
#16 13.54 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:505: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.64 [javac] store.setObjectiveLensNA(new Double(lens), 0, 0);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:506: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.64 [javac] store.setObjectiveNominalMagnification(new Double(magFactor), 0, 0);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:676: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] offset.add(new Double(value));
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:687: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] gain.add(new Double(value));
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:701: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] Double pixelSize = new Double(values[2]);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:725: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] Double pixelSize = new Double(values[3]);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:733: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] Double pixelSize = new Double(values[3]);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:757: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] Double sizeZ = new Double(values[14]);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:854: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] store.setDetectorOffset(new Double(values[i * 3]), 0, i);
#16 13.64 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:855: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.64 [javac] store.setDetectorGain(new Double(values[i * 3 + 1]), 0, i);
#16 13.64 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:248: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.74 [javac] gain = new Double(value);
#16 13.74 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:251: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.74 [javac] exposureTime = new Double(value);
#16 13.74 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:290: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.74 [javac] physicalSizeX = new Double(attrValue) / getSizeX();
#16 13.74 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:294: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.74 [javac] physicalSizeY = new Double(attrValue) / getSizeY();
#16 13.74 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:219: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.74 [javac] i1 = new Integer(s1);
#16 13.74 [javac] ^
#16 13.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:224: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.74 [javac] i2 = new Integer(s2);
#16 13.74 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1749: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 13.94 [javac] value = new Boolean(vsi.readBoolean()).toString();
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1887: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 13.94 [javac] pyramid.exposureTimes.add(new Long(value));
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1890: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 13.94 [javac] pyramid.defaultExposureTime = new Long(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1894: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 13.94 [javac] pyramid.acquisitionTime = new Long(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1897: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.refractiveIndex = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1900: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.magnification = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1903: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.numericalAperture = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1906: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.workingDistance = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1912: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.94 [javac] pyramid.objectiveTypes.add(new Integer(value));
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1915: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.94 [javac] pyramid.bitDepth = new Integer(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1918: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.94 [javac] pyramid.binningX = new Integer(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1921: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.94 [javac] pyramid.binningY = new Integer(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1924: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.gain = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1927: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.offset = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1930: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.redGain = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1933: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.greenGain = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1936: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.blueGain = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1939: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.redOffset = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1942: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.greenOffset = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1945: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.blueOffset = new Double(value);
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1949: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.channelWavelengths.add(new Double(value));
#16 13.94 [javac] ^
#16 13.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1952: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.94 [javac] pyramid.workingDistance = new Double(value);
#16 13.94 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:152: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.04 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:603: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.04 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:636: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.04 [javac] fieldMap[row][col] = new Boolean(mapping[col].trim()).booleanValue();
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:640: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.04 [javac] doChannels = new Boolean(value.toLowerCase());
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:781: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double posX = new Double(axes[0]);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:782: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double posY = new Double(axes[1]);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:802: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double xSize = new Double(value.substring(0, s).trim());
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:803: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double ySize = new Double(value.substring(s + 1, end).trim());
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:830: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double gain = new Double(token.replaceAll("gain ", ""));
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:857: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double emission = new Double(em);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:858: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] Double excitation = new Double(ex);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:539: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 14.04 [javac] Long color = new Long(value);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:551: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.deltaT = new Double(value);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:557: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.emWavelength = new Double(value);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:560: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.exWavelength = new Double(value);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:564: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.sizeX = correctUnits(new Double(value), unit);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:568: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.sizeY = correctUnits(new Double(value), unit);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:572: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.positionX = correctUnits(new Double(value), unit);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:576: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.positionY = correctUnits(new Double(value), unit);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:580: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.04 [javac] p.positionZ = correctUnits(new Double(value), unit);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:728: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.04 [javac] plateRows = new Integer(value);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:731: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.04 [javac] plateColumns = new Integer(value);
#16 14.04 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:862: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] Double x = new Double(pixX);
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:867: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] Double y = new Double(pixY);
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:872: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] Double z = new Double(pixZ);
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:951: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] expTime[coords[1]] = new Double(hdr.expTime);
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:956: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] new Time(new Double(hdr.timeStampSeconds), UNITS.SECOND), series, i);
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:970: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] FormatTools.getEmissionWavelength(new Double(waves[w]));
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:972: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] FormatTools.getExcitationWavelength(new Double(hdr.exWavelen));
#16 14.14 [javac] ^
#16 14.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:980: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.14 [javac] if (ndFilters[w] == null) ndFilters[w] = new Double(hdr.ndFilter);
#16 14.14 [javac] ^
#16 16.05 [javac] Note: Some input files additionally use or override a deprecated API.
#16 16.05 [javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
#16 16.05 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.05 [javac] 100 warnings
#16 16.05 [javac] only showing the first 100 warnings, of 101 total; use -Xmaxwarns if you would like to see more
#16 16.08
#16 16.08 formats-gpl.jar:
#16 16.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.22 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.30 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.30 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.30
#16 16.30 deps-bio-formats-plugins:
#16 16.30
#16 16.30 jar-bio-formats-plugins:
#16 16.39 [echo] isSnapshot = true
#16 16.52
#16 16.52 init-title:
#16 16.52 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.52
#16 16.52 init-timestamp:
#16 16.52
#16 16.52 init:
#16 16.52
#16 16.52 copy-resources:
#16 16.52 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.52 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.52
#16 16.52 compile:
#16 16.77 [resolver:resolve] Resolving artifacts
#16 16.78 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.99 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.79 [javac] import loci.common.ReflectedUniverse;
#16 17.79 [javac] ^
#16 17.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.79 [javac] import loci.common.ReflectedUniverse;
#16 17.79 [javac] ^
#16 18.29 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.29 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.29 [javac] ^
#16 18.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.39 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.39 [javac] ^
#16 18.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.39 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.39 [javac] ^
#16 18.59 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.59 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.59 [javac] ^
#16 18.59 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.59 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.59 [javac] ^
#16 18.94 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.94 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.94 [javac] 8 warnings
#16 18.94
#16 18.94 bio-formats-plugins.jar:
#16 18.95 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.98 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 18.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 18.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 18.99 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.99 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.99
#16 18.99 deps-bio-formats-tools:
#16 18.99
#16 18.99 jar-bio-formats-tools:
#16 19.08 [echo] isSnapshot = true
#16 19.21
#16 19.21 init-title:
#16 19.21 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.21
#16 19.21 init-timestamp:
#16 19.21
#16 19.21 init:
#16 19.21
#16 19.21 copy-resources:
#16 19.21 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.21
#16 19.21 compile:
#16 19.44 [resolver:resolve] Resolving artifacts
#16 19.45 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.66 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.66 [javac] 1 warning
#16 20.68
#16 20.68 bio-formats-tools.jar:
#16 20.69 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.69 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.70 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.70 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.70
#16 20.70 deps-tests:
#16 20.70
#16 20.70 jar-tests:
#16 20.79 [echo] isSnapshot = true
#16 20.91
#16 20.91 init-title:
#16 20.91 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.91
#16 20.91 init-timestamp:
#16 20.91
#16 20.91 init:
#16 20.91
#16 20.91 copy-resources:
#16 20.91 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.91
#16 20.91 compile:
#16 21.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.34 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.36 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.77 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.19 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.20 [resolver:resolve] Resolving artifacts
#16 22.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.27 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.68 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.05 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.06 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.27 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:609: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.27 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.27 [javac] ^
#16 24.27 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:610: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.27 [javac] reader.setCoreIndex(index);
#16 24.27 [javac] ^
#16 24.47 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.47 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.47 [javac] ^
#16 24.47 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.47 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.47 [javac] ^
#16 24.77 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.77 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.77 [javac] ^
#16 24.77 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.77 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.77 [javac] ^
#16 24.85 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.85 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.85 [javac] 7 warnings
#16 24.85
#16 24.85 tests.jar:
#16 24.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.87 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 24.87 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 24.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 24.88 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.88 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.88
#16 24.88 jars:
#16 24.88
#16 24.88 copy-jars:
#16 24.88
#16 24.88 deps-formats-api:
#16 24.93 [echo] isSnapshot = true
#16 24.97
#16 24.97 install-pom:
#16 25.11 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.11 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.11 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.11
#16 25.11 jar-formats-api:
#16 25.19 [echo] isSnapshot = true
#16 25.32
#16 25.32 init-title:
#16 25.32 [echo] ----------=========== formats-api ===========----------
#16 25.32
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#16 25.32
#16 25.32 compile:
#16 25.45 [resolver:resolve] Resolving artifacts
#16 25.45
#16 25.45 formats-api.jar:
#16 25.47 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.48 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.48 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.48
#16 25.48 deps-turbojpeg:
#16 25.48
#16 25.48 jar-turbojpeg:
#16 25.56 [echo] isSnapshot = true
#16 25.68
#16 25.68 init-title:
#16 25.68 [echo] ----------=========== turbojpeg ===========----------
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#16 25.69 [resolver:resolve] Resolving artifacts
#16 25.69
#16 25.69 jar:
#16 25.70 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 25.70 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 25.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 25.71 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.71 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.71
#16 25.71 deps-formats-bsd:
#16 25.71
#16 25.71 jar-formats-bsd:
#16 25.79 [echo] isSnapshot = true
#16 25.91
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#16 25.91 [echo] ----------=========== formats-bsd ===========----------
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#16 26.12 [resolver:resolve] Resolving artifacts
#16 26.14
#16 26.14 formats-bsd.jar:
#16 26.17 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.18 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.18 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.18 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.18 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.18
#16 26.18 deps-formats-gpl:
#16 26.18
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#16 26.26 [echo] isSnapshot = true
#16 26.39
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#16 26.39 [echo] ----------=========== formats-gpl ===========----------
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#16 26.61 [resolver:resolve] Resolving artifacts
#16 26.63
#16 26.63 formats-gpl.jar:
#16 26.66 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 26.67 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 26.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 26.67 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.67 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.67
#16 26.67 deps-bio-formats-plugins:
#16 26.67
#16 26.67 jar-bio-formats-plugins:
#16 26.75 [echo] isSnapshot = true
#16 26.88
#16 26.88 init-title:
#16 26.88 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.88
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#16 27.11 [resolver:resolve] Resolving artifacts
#16 27.12
#16 27.12 bio-formats-plugins.jar:
#16 27.14 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.14 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.14
#16 27.14 deps-bio-formats-tools:
#16 27.14
#16 27.14 jar-bio-formats-tools:
#16 27.23 [echo] isSnapshot = true
#16 27.35
#16 27.35 init-title:
#16 27.35 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.35
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#16 27.36
#16 27.36 compile:
#16 27.58 [resolver:resolve] Resolving artifacts
#16 27.59
#16 27.59 bio-formats-tools.jar:
#16 27.60 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 27.60 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 27.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 27.60 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.61 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.61
#16 27.61 deps-tests:
#16 27.61
#16 27.61 jar-tests:
#16 27.69 [echo] isSnapshot = true
#16 27.82
#16 27.82 init-title:
#16 27.82 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.82
#16 27.82 init-timestamp:
#16 27.82
#16 27.82 init:
#16 27.82
#16 27.82 copy-resources:
#16 27.82
#16 27.82 compile:
#16 28.05 [resolver:resolve] Resolving artifacts
#16 28.06
#16 28.06 tests.jar:
#16 28.06 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.07 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.07 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.07
#16 28.07 jars:
#16 28.07
#16 28.07 tools:
#16 28.07 [echo] ----------=========== bioformats_package ===========----------
#16 28.15 [echo] isSnapshot = true
#16 28.28
#16 28.28 init-timestamp:
#16 28.28
#16 28.28 bundle:
#16 28.52 [resolver:resolve] Resolving artifacts
#16 28.53 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.56 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.58 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.68 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.70 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.75 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.76 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.05 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.07 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.13 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.14 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.15 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.16 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.34 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.85 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.85 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.96 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.29 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.44 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.97 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.20 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.53 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.69 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.32 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.33 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.51 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.52 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.53 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.69 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.72 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.74 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.77 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.19 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.66 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.10 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.66 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.67 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.74 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.74 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.75
#16 39.75 BUILD SUCCESSFUL
#16 39.75 Total time: 39 seconds
#16 DONE 39.9s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:bee7c855cb6dfbda4641bbdf545ba33abad9727882e951b5f34d2705d0aea700 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.1s done
#18 DONE 3.5s
Finished: SUCCESS
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